Activity
From 04/24/2015 to 05/23/2015
05/23/2015
- 10:59 PM Revision 0e83d3c3 (cdm-server): new launcher to start the cdmserver for profiling with yourkit
- 10:58 PM Revision d04845f5 (cdm-server): solving problem with duplicate c3p0 management beans after instance start and correctly destroying the c3p0 datasources after instance shutdown
- 10:56 PM Revision 33600f7c (cdm-server): suggesting furher investigation of problems with c3p0 0.9.5
05/22/2015
- 09:56 PM Revision a375171e (cdm-server): applying more config changes according to recommendations in the official c3p0 doc
- 09:38 PM Revision 87f6f730 (cdmlib): Simplify table structure for CategoricalData-StateData and and QuantitativeData_StatisticalMeasurementValue #4841 - fixing update script for MySQL
- 08:17 PM Revision 30e73f2c (cdm-server): further improvement by setting testConnectionOnCheckin = false, minPoolSize = 1 - effect verified by benchmarking on my laptop
- 07:10 PM Revision 9d61d919 (taxeditor): CacheLoader : added strict check in recurive loop for same (not only equal) objects
- EntityCacherDebugResult : removed deproxy of objects
ProxyUtils : refactoring
httpInvokerServiceClients.xml : correct... - 06:13 PM Revision affa144b (cdmlib): Simplify table structure for CategoricalData-StateData and and QuantitativeData_StatisticalMeasurementValue #4841
- 06:11 PM Revision c20d5dff (cdmlib): Simplify table structure for CategoricalData-StateData and and QuantitativeData_StatisticalMeasurementValue #4841
- 05:29 PM Revision 37c6a233 (cdmlib): fix tests for model 3.6
- 05:08 PM Revision 5cd0f64f (cdmlib): fix RegEx dot bugs in NonViralName RegExs
- 04:19 PM Revision 714acf5d (cdm-server): switching back to c3p0 0.9.2 and removing the explicit log4j setting to solve probelms with lost connetions in jndi
- 03:12 PM Revision 2d2992b8 (cdm-server): using the log4j.properties in user.home/.cdmLibrary/log4j.properties in the launcher
- 02:48 PM Revision 0e262da1 (cdmlib): minor
- 02:24 PM Revision 62f7f3cb (cdmlib): merge trunk into model change 3.6
- 02:21 PM Revision 9a1e9d18 (cdm-server): trying to avoid excessive connection testing and to quickly reduce the number of connections in the pools
- 02:00 PM Revision 677b2f78 (cdmlib): cleanup
- 01:53 PM Revision 69b690c4 (cdmlib): adapt nonViralNameParser to model changes
- 01:51 PM Revision 1e1f192e (cdmlib): updated NonViralNameParserImplTest
- 01:50 PM Revision b76356eb (cdmlib): update schemaUpdater35_36
- 01:49 PM Revision 4944449a (cdmlib): add MnTableRemover
- 01:49 PM Revision a5f70cef (cdmlib): cleanup
- 01:49 PM Revision d2b68476 (cdmlib): cleanup
- 01:48 PM Revision 3f2f14db (cdmlib): adapt ModelUpdate tester
- 12:54 PM Revision 1690288d (cdm-server): following 'Simple advice on Connection testing' : testConnectionOnCheckout = true
- 12:54 PM Revision a1cc2b28 (cdm-server): upgrading c3p0 from 0.9.2 to 0.9.5
- 12:54 PM Revision 3452f94a (cdm-server): modifications to the eclipse launcher
- 11:37 AM Revision 8ab62f50 (taxeditor): fixed problems with new classes in merge
- 11:25 AM Revision d61bbb8b (taxeditor): fixed problems with merge
- 10:54 AM Revision 4b94c9cf (taxeditor): Merge branch 'move-to-luna' into remoting-4.0
- Conflicts:
eu.etaxonomy.taxeditor.cdmlib/.classpath
eu.etaxonomy.taxeditor.cdmlib/META-INF/MANIFEST.MF
eu.etaxonom...
05/21/2015
- 06:51 PM Revision 64993970 (taxeditor): removed test dir as source dir
- 06:45 PM Revision eb582aa5 (taxeditor): Adjustments to recent changes in LibrAlign.
- 05:00 PM Revision 8ee01de1 (cdmlib): Merge branch 'master' of wp5.e-taxonomy.eu:/var/git/cdmlib into remoting-4.0
- Conflicts:
cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/DefinedTerm.java
cdmlib-model/src/main/java/eu/... - 04:36 PM Revision 7d7355ba (cdmlib): integrate parameters into constructor for updaters
- 04:23 PM Revision 192738d6 (cdmlib): added dirs and files to ignore
- 03:16 PM Revision a0971723 (taxeditor): Merge branch 'master' of wp5.e-taxonomy.eu:/var/git/taxeditor
- 03:16 PM Revision 4db8d201 (taxeditor): corrected visibility check for edit authorities editor
- 03:07 PM Revision 010eb02b (taxeditor): corrected visibility check for edit authorities editor
- 02:44 PM Revision 6934abd6 (taxeditor): fix UTF-8 issue in menu label
- 01:50 PM bug #3098 (Resolved): CdmPermissionEvaluator can test for multiple permissions
- is this still an open issue?
- 01:50 PM Revision a41fa7f7 (taxeditor): MANIFEST.MF, feature.xml : removed dependency on specific versions
- rcp.target : added vm arguments
- 01:36 PM feature request #4922 (New): GrantedAuthorities not reusable anymore
- Currently granted authorities are reusable. We want to make them group/user specific. Whenever a GA is removed from i...
- 11:59 AM Revision cd488e9d (taxeditor): corrected target definition
- 11:33 AM Revision 0fe7b5fe (taxeditor): Merge remote-tracking branch 'origin/master' into move-to-luna
05/20/2015
- 07:35 PM Revision 33523106 (taxeditor): added id to uuidAndTitleCache fixes in TaxEditor #4799
- 07:17 PM Revision 551dd959 (taxeditor): changed nebula update site to the stable release url
- 07:16 PM Revision e1f2a065 (taxeditor): dependency changes to move to e4
- 05:39 PM Revision ccb3c146 (cdmlib): added id to uuidAndTitleCache #4799 (bugfix)
- 05:23 PM Revision a15c158c (cdmlib): added id to uuidAndTitleCache
- 04:42 PM bug #4919: improve AdvancedBeanInitializer
- fixing problem with missing autoinitialization of titleCaches: r23866
- 01:12 PM bug #4919: improve AdvancedBeanInitializer
- improvements by solving 1. autoinitialization of Collection items :
* 72b0ad09b r23851
related bugfixes:
* git:... - 11:41 AM bug #4919 (New): improve AdvancedBeanInitializer
- The AdvancedBeanInitializer needs improvements:
1. autoinitialization of Collection items in case of `bean.colle... - 04:38 PM Revision ff8a5e4a (cdmlib): increasing the permGenSpace in the eclipse launcher
- 04:38 PM Revision 2e592aaa (cdmlib): fixing problem with missing autinitialization of titleCaches, contributes to #4919
- 04:26 PM Revision 3fa7e3fe (taxeditor)
- 04:05 PM Revision 1cd65199 (taxeditor): .classpath, MANIFEST.MF, build.properties, pom.xml : added cdm-server jar to lib dir and project classpath
- /lib : added ignore for cdm-server jar
CacheLoader : reverted update of cached entity field
cdmlib-remote-webapp.war ... - 03:45 PM bug #4915: Abbrev title for person should never be orange
- It is true, that if long and abbreviated forms exist these 2 forms always are the fallback if no real atomized data e...
- 02:39 PM bug #4915: Abbrev title for person should never be orange
- the abbrev title is used for the titleCache if no lastname is available so if the cachestrategy is correct the orange...
- 02:46 PM Revision d14dd820 (cdmlib): AnnotatableEntity : removed dynamic generation of marker set
- Taxon : reverted
TaxonServiceImpl : added affected object on delete - 02:31 PM Revision d81d2ff3 (taxeditor): corrected usage of service calls returning update/delete result objects
- 02:24 PM Revision c9285745 (taxeditor): InspectSessionsDialog : added filtering
- CdmStore : clearing caches and session before connecting
ParseHandler : using NonViralName instead of TaxonNameBase
A... - 02:16 PM Revision f399aa02 (taxeditor): corrected / moved existing tests
- 02:12 PM Revision d175d20f (taxeditor): added cdm entitysession enabled objects to operations
- 02:03 PM Revision 207d5d50 (cdmlib): - implemented importing of DNA ABCD units
- - DNA sampled will be attached to already existing specimens
- re-enabled tests - 02:00 PM Revision 56200bd1 (taxeditor): CdmTransientEntityCacher : adding cache to default cache manager
- EntityCacherDebugResult : corrections
cdmlib-remote-webapp.war : new version - 01:23 PM task #4911: improve performance of distributionInfoFor service
- improvements implemented:
* r23851, r23844, r23840,
See also the related improvements made at the AdvancedBeanIn... - 11:28 AM task #4911 (In Progress): improve performance of distributionInfoFor service
- 01:11 PM Revision d220174c (cdm-server): changed references of cdmlib-remote-webapp to cdm-webapp
- 01:05 PM Revision c9b5f651 (cdmlib): sloving NPE in AdvancedBeanInitializer
- 12:59 PM Revision 0ef168b6 (taxeditor): #4907 create in agent bulkeditor has no effect
- 11:27 AM Revision 824e1221 (cdmlib): fixing bug related to generic types
05/19/2015
- 05:05 PM Revision 7d3d8eab (taxeditor): remove syso
- 05:00 PM bug #4915 (Closed): Abbrev title for person should never be orange
- the abbreviated title of a person should never become orange as it is not a cache field. However it sometimes becomes...
- 04:54 PM Revision 72b0ad09 (cdmlib): further performance improvements: - better autoinitialization of collection items, - fixing bug in AdvancedBeanInitializer: adding missing LEFT to JOIN FETCH
- 02:37 PM Revision fabf7027 (cdmlib): fixing bug in matchesLevel method
- 02:37 PM Revision 89d58417 (cdmlib): adding missing sources
- 12:17 PM Revision a21bc8ed (cdm-webapp): initial commit
- 12:05 PM Revision ea4f846b (cdmlib): removed vaadin dependency
05/18/2015
- 05:59 PM feature request #4908: adding convert Team to Person and Person to Team to the bulk editor
- German translation for both converters is still missing.
- 12:14 PM feature request #4908 (Resolved): adding convert Team to Person and Person to Team to the bulk editor
- implemented in r23831
- 12:14 PM feature request #4908 (Closed): adding convert Team to Person and Person to Team to the bulk editor
- the functionality convert team to person and person to team should be available in the agent bulk editor.
relate... - 05:48 PM task #4911 (Duplicate): improve performance of distributionInfoFor service
- currently the distributionInfoFor service call is the slowest request for a lot of portals to build up the taxon gene...
- 05:18 PM Revision b7830280 (taxeditor): minor
- 05:10 PM Revision e7e7198b (cdmlib): - added tests to ignore because other tests fail :-/
- 04:44 PM Revision 4738c160 (cdmlib): speed up of DistributionTree.orderAsTree() by factor 1.6
- 04:44 PM Revision f5051775 (cdmlib): setting source dependencies for m2e enviromnent
- 04:44 PM Revision e309a2b8 (cdmlib): adding method to get the intentifier from hibernate proxies
- 04:44 PM Revision f74ce766 (cdmlib): increasing the permGenSpace for profiling sessions
- 04:44 PM Revision e36ff7fd (cdmlib): performance improvement by 42% by using default initstrategy for composeDistributionInfoFor()
- 04:40 PM Revision 33463936 (cdmlib): - re-enabled and fixed ABCD import tests(#4910)
- 04:35 PM Revision 0200c616 (cdmlib): - added null check
- 04:34 PM Revision d56f5219 (cdmlib-apps): rename EuroMedVibrant activator
- 04:33 PM Revision 7662bd52 (cdmlib-apps): rename EuroMedVibrant activator
- 04:09 PM Revision 06ca4e16 (cdmlib): - improved name matching for NamedAreas (continents) in ABCD import (#4910)
- - added null check
- fixed ggbn extension check - 03:04 PM Revision a3182ec6 (taxeditor): - deproxy CDM entities to get correct class as part title of DetailsView
- 02:45 PM Revision 9ab081a8 (taxeditor): - show recordBasis for specimens as part title of DetailsView
- 01:03 PM Revision 40a272d6 (taxeditor): - simplified part title of DetailsView
- 12:16 PM feature request #4896 (Resolved): Bulkeditor: deduplication of objects of different type
- is implemented in r23831
- 11:59 AM Revision 635b598e (taxeditor): bulkeditor: merge of teams and persons and convert team to person and person to team
- 08:51 AM Revision 5174bd4c (cdmlib): - optimized name matching for terms in ABCD import
05/14/2015
05/13/2015
- 04:32 PM Revision 35619936 (cdm-dataportal): abrviated childlabel can be hidden, contribution to #4906: cyprus: Areas missing in advanced search distribution filter widget
- 04:24 PM Revision a783afbc (cdm-dataportal): sorting areas in natual order, contribution to #4906: cyprus: Areas missing in advanced search distribution filter widget
- 03:08 PM Revision d9a8f632 (taxeditor): - unified section headers for derivative details view
- - show selected element in part title of DetailsView
- 02:40 PM Revision 41c6dd13 (cdm-dataportal): better handling of area terms in case of mixed vocabularies
- 12:31 PM Revision 52371202 (cdm-dataportal): using recommended getTitle method
- 11:37 AM Revision b61dbf03 (taxeditor): - fixed filtering by specimen type (UNKNOWN = wild card)
- 11:16 AM Revision df751fbd (cdmlib): fixing further bean field property mapping probelm, contributes to #3841: resolve bean inconsistencies
- 11:15 AM Revision ad3b1993 (cdmlib): adding missing @Transient
- 11:07 AM Revision 2cc2ab44 (taxeditor): - added transient service methods
- 10:56 AM Revision 49e0f229 (cdmlib): - made service methods public
- - added java doc
- fixed typo - 10:07 AM Revision 62fa22eb (taxeditor): - when searching for a taxon also the indirectly associated specimens of the derivative hierarchy are shown
- 10:06 AM Revision 0898a368 (cdmlib): - added option to retrieve indirectly associated specimen
- - added service method to retrieve the completete derivative hierarchy for a given specimen
- added test
05/12/2015
- 05:18 PM Revision 6ace3b29 (cdmlib): fixing #4179 (improve performance of portal/taxon/{uuid}/media)
- 05:01 PM Revision b62d5268 (cdmlib): adding log4j.properties in user home to launcher
- 11:58 AM Revision 648bb157 (cdmlib): fixing #4903 (SQLGrammarException exception in description/namedAreasInUse)
- 11:07 AM Revision 1c45408b (cdmlib): adding forceSchemaUpdate to the cdmlib-remote-webapp launcher
- 10:47 AM Revision 742aad84 (cdmlib): - added config option to ignore already existing specimens during import
- - for ggbn import already existing specimens are searched and attached if associated to the dna unit
- refactored Ab... - 10:44 AM Revision efb18337 (cdmlib): - added significantIdentifer as search parameter to occurrenceService.findByTitle()
05/11/2015
- 05:59 PM Revision 86558972 (cdm-dataportal): setting new text for classification filter, solves #4872
- 03:08 PM Revision e494ec0c (cdm-dataportal): applying the fix for #4887 also to the zen SUBTHEME
- 02:57 PM Revision 7440e8d9 (cdm-vaadin): aligning with master branch
- Merge remote-tracking branch 'origin' into develop
- 02:46 PM Revision 17c8425f (taxeditor): - missing @Override
- 02:37 PM Revision 3042fbba (cdm-vaadin): reverted back to current version
- 02:33 PM Revision efb89126 (cdm-vaadin): reverted version to current
- 02:03 PM Revision b09c1f76 (cdmlib): - added modifying text to factual data label #4883
- 01:49 PM Revision 6be69f79 (taxeditor): minor
- 01:48 PM Revision dbde6b75 (taxeditor): natural order preferences
- 01:47 PM Revision f144593a (taxeditor): add dialog for the natural order preference
- 01:39 PM Revision 4633f830 (taxeditor): make the order of the taxon nodes editable
- 01:37 PM Revision a37e74f6 (cdmlib): make the taxonomic tree editable in natural order (see #3771), adding comparator
- 12:16 PM Revision 0fa9e660 (cdmlib): delete the embedded class UuidAndTitleCacheOfAcceptedTaxon
- 12:06 PM Revision a3395766 (cdmlib): privates for uuidAndTitleCache
- 11:04 AM Revision dcec2a45 (taxeditor): #4855 add MoveSynonymToAnotherAcceptedTaxonHandler and some clean up of the plugin.xml especially the delete
- 10:10 AM Revision 2ffe898f (cdm-vaadin): updating poms for 3.5.3-SNAPSHOT development
- 09:43 AM Revision 104a2316 (taxeditor): - added missing dependencies to feature
05/09/2015
- 12:07 AM Revision 3f7e702b (cdm-dataportal): Merge branch 'feature/#4887' into develop
- 12:07 AM Revision e07fb23c (cdm-dataportal): removing obsolete comment
- 12:07 AM Revision 5e6b5238 (cdm-dataportal): removing unnecesary enhancement
- 12:07 AM Revision 3101acc8 (cdm-dataportal): making ie8 legacy css rule specific only for ie8
05/08/2015
- 06:41 PM feature request #4900: Updatescript for missing index on treeindex
- [[MySQL]]:
`TaxonNode`
- 06:39 PM feature request #4900 (New): Updatescript for missing index on treeindex
- For old databases we need to create the index on the new treeindex fields manually.
We need an update script for... - 06:00 PM Revision 7197780f (cdm-vaadin): reverted back version
- 05:55 PM Revision 416bf4ab (cdm-vaadin): Updating develop poms back to pre merge state
- 05:55 PM Revision a2642ba5 (cdm-vaadin): Merge branch 'master' into develop
- 05:55 PM Revision 01e93e9c (cdm-vaadin): updating develop poms to master versions to avoid merge conflicts
- 05:55 PM Revision 1d39a64d (cdm-vaadin): Merge branch 'release/3.5.2'
- 05:53 PM Revision c28b625d (cdm-vaadin): updating poms for branch'release/3.5.2' with non-snapshot versions
- 05:52 PM Revision 29f893a0 (cdm-vaadin): updating poms for 3.5.3-SNAPSHOT development
- 05:52 PM Revision 83d33261 (cdm-vaadin): updating poms for branch '3.5.2' with snapshot versions
- 05:43 PM Revision 4cde4a47 (cdm-vaadin): allowing untracked files for when checking local repo for jgitflow
- 05:40 PM Revision edb8221f (cdm-vaadin): added jgitflow plugin
- 05:12 PM Revision 9b9ccf1a (taxeditor): fixing NPE for empty float values #4448
- 03:06 PM Revision f0e3e0ff (taxeditor): fix remaining issues for taxon field prefill #4860
- 01:43 PM Revision 329b5652 (cdm-vaadin): Updated version in pom to 3.5.3-SNAPSHOT for cdmlib and 3.5.3-SNAPSHOT for cdm-vaadin
- 01:43 PM Revision de96b032 (cdm-vaadin): Merge branch 'release/3.5.2'
- 01:43 PM Revision a75aaf9f (cdm-vaadin): Merge tag '3.5.2' into develop
- Release 3.5.2 3.5.2
- 01:39 PM Revision dba2756b (cdm-vaadin): Updated version in pom to 3.5.2 for cdmlib and 3.5.2 for cdm-vaadin
- 01:37 PM Revision a091413d (cdm-vaadin): Updated version in pom to 3.5.3-SNAPSHOT for cdmlib and 3.5.3-SNAPSHOT for cdm-vaadin
- 01:36 PM Revision dc7d8221 (cdm-vaadin): Merge tag '3.5.2' into develop
- Release 3.5.2 3.5.2
- 01:36 PM Revision c2ce3501 (cdm-vaadin): Merge branch 'release/3.5.2'
- 01:34 PM Revision b51ca015 (cdm-vaadin): Updated version in pom to 3.5.2 for cdmlib and 3.5.2 for cdm-vaadin
- 12:35 PM Revision cbab772f (cdm-vaadin): Merge branch 'release/3.5.2'
- 12:34 PM Revision 39ea2294 (cdm-vaadin): Updated version in pom to ..1-SNAPSHOT for cdmlib and ..1-SNAPSHOT for cdm-vaadin
- 12:34 PM Revision 86168ba3 (cdm-vaadin): Updated version in pom to 3.5.2 for cdmlib and 3.5.2 for cdm-vaadin
- 12:32 PM Revision 6d1e71ff (cdm-vaadin): Merge tag '3.5.2' into develop
- Finalising release 3.5.2 3.5.2
- 12:31 PM Revision 7a7f214e (cdm-vaadin): Merge branch 'release/3.5.2'
- 12:23 PM Revision 782f0a52 (cdm-vaadin): reverted back to current version
- 12:09 PM Revision 862bbdf0 (cdm-vaadin): Merge tag '3.5.2' into develop
- testing release tag
- 12:08 PM Revision f3e9f76c (cdm-vaadin): Merge branch 'release/3.5.2'
- 11:38 AM Revision 2351f090 (cdm-vaadin): Updated version in pom to 3.5.2 for cdmlib and 3.5.2 for cdm-vaadin
- 11:33 AM Revision fe023f8e (cdm-vaadin): Merge branch 'release/3.5.2'
05/07/2015
- 06:12 PM Revision f32fb062 (taxeditor): - added text for non-exisiting label to factual data view (#4883)
- 05:34 PM Revision 099b6ca3 (taxeditor): - removed "Copy" menu entry for classifications (#4864)
- 05:27 PM Revision 2a3aed04 (cdm-vaadin): testing git flow publish
- 05:21 PM Revision 86ecbed8 (cdm-vaadin): testing for remote feature
- 05:16 PM Revision 3e7f8ad4 (cdm-vaadin): removed incorrect test datasource setting and corresponding factory class
- 04:34 PM Revision 0e7981e2 (cdm-vaadin): NewTaxonBasePresenterTest.xml : adjusted ids in test data to avoid unique key issue
- unitils.properties : reverted back to standard h2 jdbs driver
- 02:17 PM Revision 0f0c1e8c (taxeditor): - added property tester to check if CdmStore is connected (#4809, #4856)
- 01:31 PM Revision f0adbe96 (cdm-vaadin): pom.xml : set explicit memory parameters for tests
- StatusPresenterTest : corrected test to adjust for new rank filter
- 01:27 PM Revision fed8fe95 (taxeditor): - pre-fill parent taxon name in new taxon wizard (#4860)
- 01:26 PM Revision 487bc1f1 (taxeditor): - fixed combo drop down list by using only plant kind of unit vocabulary
- 12:40 PM Revision 10cc0e5e (cdm-vaadin): NewTaxonBaseComposite : add exception handling when name already exists
- StatusComposite : added tab sheet with main / excluded tabs
CdmQueryFactory, LeafNodeTaxonContainer : added rank filt... - 09:45 AM feature request #4896 (Closed): Bulkeditor: deduplication of objects of different type
- it should be possible to merge objects of different type, for example team and person. The functionality already exis...
- 09:33 AM Revision 8f9901d8 (taxeditor): - added hybrid formula checkbox (#4870)
- 09:14 AM Revision 3100d4ea (cdm-vaadin): updated compiler plugin to use,
- - version 3.3
- java version 1.7
- encoding UTF-8
05/06/2015
- 06:38 PM Revision f1a1f6de (cdm-vaadin): ConceptRelationshipComposite, ConceptRelationshipView : using source from event to set primary composite
- LeafNodeTaxonContainer : checking for nulls
SelectionEvent : added source object as member
StatusComposite : adding c... - 06:26 PM Revision 4c1234a5 (cdmlib): - added count to single reads in portal
- 05:46 PM Revision 77b3215e (cdmlib): add update script and JAXB annotation for sequence positions #4743
- 05:38 PM Revision ec3a066d (cdmlib): Adding firstSeqPosition, leftCutPosition and rightCutPosition to SingleReadAlignment #4743 , Update script still missing
- 04:53 PM Revision 5eafa5ff (cdm-dataportal): - some text fine-tuning
- 02:49 PM Revision f097a7d6 (cdm-dataportal): - changed "derivate" to "derivatives"
- 02:49 PM Revision b0e037f6 (taxeditor): - changed "derivate" to "derivatives"
- 02:49 PM Revision dae07830 (cdmlib): - changed "derivate" to "derivatives"
- 02:26 PM Revision d6d61321 (taxeditor): - changed label provider according to requirements
- 12:10 PM Revision cd3136ac (cdm-vaadin): set default limit in sql queries to 15000
- 09:36 AM Revision 968b089e (taxeditor): merge-update from trunk
05/05/2015
- 05:52 PM Revision ef4f2e8e (cdmlib): update script for removing unique key on supportedCategoricalEnums and recommendedModifierEnums #4843
- 05:06 PM Revision 9d11084b (cdm-vaadin): related to #4886
- ConceptRelationshipComposite, D3ConceptRelationshipTree, ConceptRelationshipPresenter, IConceptRelationshipComponentL...
- 04:51 PM Revision 0def8eea (cdmlib): change SupportedCategoricalEnumeration and RecommendedModifierEnumeration from OneToMany to ManyToMany #4843
- 03:39 PM Revision 716e2ac9 (taxeditor): - added sorting by title cache of specimens to individual associations in factual data view
- 02:50 PM Revision d4361fc7 (cdmlib): implement datasource type inference for external datasources: #3910
- 02:29 PM Revision 90cf504a (cdm-vaadin): Fixed layout issues.
- StatusComposite : added async operation for disableing components when reloading taxa
- 02:17 PM Revision ae242859 (cdm-dataportal): - added null check
- 02:07 PM Revision f8438059 (cdm-dataportal): - added null check
- 01:36 PM Revision 37ab3ddc (cdm-dataportal): - show primer information in specimen tab although no contig file specified
- 01:36 PM Revision 7ad9dbaf (cdmlib): - show primer information in specimen tab although no contig file specified
- 12:32 PM bug #4884 (Closed): Update Reference_AUD.refType to allow NULL
- Write update script to allow NULL for Reference_AUD.refType
see #4885 to see why this is needed
- 11:54 AM Revision 73389ea5 (taxeditor): - filtered combo dropdown for modifiers in details view (#4448)
- 10:36 AM Revision 0473d89a (cdm-dataportal): setting missing maven plugin versions
- 10:18 AM Revision f4a95c6e (taxeditor): - fixed potential NPE
05/04/2015
- 11:04 PM feature request #4880 (New): implement indicator that shows the amount/percentage of indexed cdm entities
- Currently it is hard to tell if a cdm base has been indexed or not.
This indicator will display the percentage of ... - 06:02 PM bug #3872: Title cache is null if the reference is a journal
- This may be checked and fixed together with all other reference.titleCache related tickets in #4338
- 05:10 PM task #4846: update the integration portals to use the zen_basetheme
- move open 3.5.1 tickets to next milestone after release
- 05:10 PM bug #4583: zoological names with book as nomref shown with undesirable comma
- move open 3.5.1 tickets to next milestone after release
- 05:10 PM bug #4582: image gallery settings have no effect
- move open 3.5.1 tickets to next milestone after release
- 05:10 PM feature request #4383: multiple issues with de-duplication of references in bibliography
- move open 3.5.1 tickets to next milestone after release
- 05:10 PM bug #4223: Advanced search returns unexpected results
- move open 3.5.1 tickets to next milestone after release
- 05:10 PM feature request #3742: Display altitude, distance to Ground and watersurface correctly in dataportal
- move open 3.5.1 tickets to next milestone after release
- 05:10 PM feature request #3697: Distinguish display of fossil and "normal" occurrence records in specimen map
- move open 3.5.1 tickets to next milestone after release
- 05:10 PM bug #3564: Image metadata in lightbox not loaded in some cases
- move open 3.5.1 tickets to next milestone after release
- 05:10 PM bug #3370: ExternalLinks [ext-links]: External services: GBIF: add infraspecific taxa
- move open 3.5.1 tickets to next milestone after release
- 05:10 PM bug #3061: Lecototype typeReference not rendered correctly
- move open 3.5.1 tickets to next milestone after release
- 05:10 PM feature request #2985: Improve Specimen details display
- move open 3.5.1 tickets to next milestone after release
- 05:10 PM bug #2850: Error message on empty distribution
- move open 3.5.1 tickets to next milestone after release
- 05:10 PM task #2494: replace garland_cichorieae_cdm_taxon_list_thumbnails by settings
- move open 3.5.1 tickets to next milestone after release
- 05:08 PM feature request #4770: Allow convert person to team
- move open 3.5.1 tickets to next milestone after release
- 05:08 PM feature request #4769: Allow convert team to person
- move open 3.5.1 tickets to next milestone after release
- 05:08 PM bug #4721: RestServices for list methods return error when index is out of range
- move open 3.5.1 tickets to next milestone after release
- 05:08 PM feature request #4716: Other dependencies to be updated
- move open 3.5.1 tickets to next milestone after release
- 05:08 PM bug #4707: LSID Authority service cannot find CoL LSIDs
- move open 3.5.1 tickets to next milestone after release
- 05:08 PM task #4600: Investigate and implement tests for security in cdm-vaadin
- move open 3.5.1 tickets to next milestone after release
- 05:08 PM feature request #4570: Add vocabulary for Specimen Description Features
- move open 3.5.1 tickets to next milestone after release
- 05:08 PM bug #4390: Titlecache of field unit does not update when changing field unit data via derived unit facade
- move open 3.5.1 tickets to next milestone after release
- 05:08 PM bug #4377: LazyInitializationException (LIE) related to Team.teamMembers when calling portal/taxon.json
- move open 3.5.1 tickets to next milestone after release
- 05:08 PM bug #4330: Correct handling of nomenclatural inreferences of Journals
- move open 3.5.1 tickets to next milestone after release
- 05:08 PM task #4232: Check all Comparators for fulfilling the Comparator contract
- move open 3.5.1 tickets to next milestone after release
- 05:08 PM feature request #3816: Create "Undefined" status and choose it for NULL status
- move open 3.5.1 tickets to next milestone after release
- 05:08 PM feature request #3580: Write permission error with temporary cdmserver echache dir
- move open 3.5.1 tickets to next milestone after release
- 05:08 PM feature request #3465: Function to copy secundum reference of a given taxon node to all it's children
- move open 3.5.1 tickets to next milestone after release
- 05:08 PM task #3408: replace spring-modules-cache by up to date implementation
- move open 3.5.1 tickets to next milestone after release
- 05:08 PM feature request #3362: Enabling sound files (mp3) in EDITor and data portal
- move open 3.5.1 tickets to next milestone after release
- 05:08 PM feature request #3133: security: preparation and first steps for Role, CdmAuthority and GrantedAuthorityImpl implement GrantedAuthority
- move open 3.5.1 tickets to next milestone after release
- 05:08 PM bug #3098: CdmPermissionEvaluator can test for multiple permissions
- move open 3.5.1 tickets to next milestone after release
- 05:08 PM bug #2939: ehcache diskStore conflict?
- move open 3.5.1 tickets to next milestone after release
- 05:08 PM task #2501: Remove redundant SDD import class
- move open 3.5.1 tickets to next milestone after release
- 04:58 PM Revision ad352427 (cdmlib): updated cdm-vaadin version to 3.5.2-SNAPSHOT
- 04:26 PM Revision a453d164 (cdm-vaadin): StatusComposite : seperated init and refresh methods for the txa table, using seperate method to set visible comun ids
- LeafNodeTaxonContainer : corrected isSynonym method
- 04:13 PM Revision 4a5e7739 (taxeditor): revert message handling for ApplicationWorkbencAdvisor #4657
- 03:17 PM bug #4879 (New): Concept relationship annotations not shown in the portal
- ticket split of from #2679 (Improve Concept Relationships for Dataportal)
[a.mueller]
For testing I added a... - 03:15 PM Revision b08454a5 (cdm-server): [maven-release-plugin] prepare for next development iteration
- 03:15 PM Revision 78c66c1b (cdm-server): [maven-release-plugin] prepare release cdm-server-3.5.1
- 02:53 PM Revision 871819aa (cdm-vaadin): updated version to snapshot
- 02:47 PM Revision c38279ea (cdmlib-apps): update version for app-imports and xper2
- 02:45 PM feature request #4877 (New): implement setting for choosing the SourceTypes to be shown
- follow up ticket of #4412 (if OriginalSource.idNamespace is present then the footnote for the source is not displayed...
- 02:45 PM Revision 12b26f05 (cdmlib-apps): update version for eflora and pesi
- 02:43 PM Revision 1d8615bb (taxeditor): Snapshot branch for version 3.5.2-SNAPSHOT
- 02:43 PM Revision 9b10f34c (taxeditor): Updated version in config files to 3.5.2-SNAPSHOT
- 02:38 PM Revision dec40d07 (taxeditor): Updated version in config files to 3.5.1
- 02:18 PM Revision 2af066eb (cdm-vaadin): version update for release
- 01:56 PM Revision f2597237 (cdmlib): [maven-release-plugin] prepare for next development iteration
- 01:56 PM Revision 241f2c6c (cdmlib): [maven-release-plugin] prepare release cdmlib-parent-3.5.1
- 12:06 PM Revision d0d30083 (cdmlib)
- 12:00 PM Revision 552f7db9 (cdmlib)
- 11:57 AM Revision f8538f8f (cdmlib)
- 11:12 AM Revision c181dd25 (cdmlib)
- 11:02 AM Revision b323fb94 (cdmlib)
- 09:48 AM Revision 104b7bdb (taxeditor)
- 09:47 AM Revision 73b60882 (cdmlib)
05/01/2015
- 12:14 AM Revision af080402 (cdmlib): minor
- 12:12 AM Revision 98fb9ce4 (cdmlib): Implement bidirectionality for QuantitativeData-StatisticalMeasurementValue #4845
- 12:10 AM Revision b3bec3a9 (cdmlib): fix stateData removal #4840
04/30/2015
- 10:16 PM feature request #4867 (In Progress): Add menu item for subtree cloning
- once #4866 is available we may need it as an menu item for classifications / subtrees in the taxon navigator.
Al... - 10:13 PM feature request #4866 (Closed): Implement clone method for complete classifications
- For the Concept Relationship Editor we may need to be able to clone classifications (create new versions of a classif...
- 09:23 PM Revision d6fcdafc (cdmlib): add validation rule request for idInVocabulary #3379, #4245
- 09:17 PM Revision 0b5af103 (cdmlib): minor
- 05:48 PM Revision be734ae2 (cdm-dataportal): push test
- 05:40 PM Revision 67b13b9d (cdm-dataportal): push test
- 05:32 PM Revision 9d0e1243 (cdm-dataportal): push test
- 05:26 PM Revision 9c842709 (cdm-dataportal): push test
- 05:24 PM Revision 39eead51 (cdm-dataportal): push test
- 05:22 PM Revision e04a4619 (cdm-dataportal): push test
- 05:20 PM Revision dfa3d6c5 (cdm-dataportal): push test
- 05:19 PM Revision 2f0c717d (cdm-dataportal): push test
- 05:16 PM Revision 5be4be87 (cdm-dataportal): push test
- 05:11 PM Revision 7e8a3691 (cdm-dataportal): push test
- 05:11 PM Revision 7a70db3e (cdm-dataportal): push test
- 05:03 PM Revision 5b8bbd6b (cdm-dataportal): push test
- 04:53 PM Revision 2f283ea2 (taxeditor): remove javadoc
- 04:45 PM Revision e3086498 (cdm-dataportal): push test
- 04:41 PM Revision 1387890b (cdm-dataportal): push test
- 04:37 PM Revision 05b2e3a0 (cdm-dataportal): push test
- 04:25 PM feature request #4594: RL Webservice 7: Return taxa by Identifier
- due lack of time...no further investigation
- 02:48 PM Revision 550710d2 (cdmlib): Partial Fix of Ticket #4728
- 01:41 PM Revision 054d53e4 (taxeditor): potential fix for #4535
- 01:23 PM Revision 16c56c12 (taxeditor): fixed potential NPE see Ticket #4854
- 01:08 PM Revision be1478a2 (cdm-vaadin): Fixed problem for toolbar and new authentification object. Added getter method to CdmVaadinAuthentication, in order to get the principal object with user name and roles.
- 12:23 PM Revision eeb739c3 (taxeditor): #4653 if a text field is empty, getText returns null instead of an empty string
- 12:08 PM Revision 15170237 (cdmlib): solving problem in #4803 (Upgrade dbunit and easymock)
- 12:03 PM Revision d099b1b9 (cdmlib): ignore
- 10:50 AM Revision 3c652ed1 (taxeditor): - added missing required plugins to feature platform (#4807)
- 10:10 AM task #4852 (New): cdm_dataportal installation profile misses IMCE permission for role 'CDM admin'
- in order to enable users with the role 'CDM admin' it is currently necessary to assign the IMCE profile 'User-1' to t...
- 10:02 AM Revision 07cac652 (taxeditor): - set focus to taxon name field in new taxon wizard (#4811)
- - unified entity selection fields, all have "Browse" and "Delete" now (#2359)
04/29/2015
- 07:17 PM Revision 19a6274b (cdm-vaadin): Merge branch 'creditor'
- 07:15 PM Revision c3dcb24c (cdm-vaadin): StatusComposite : added 'set as unresolved' action to context menu
- LeafNodeTaxonContainer : added sorting of synonym container
- 06:52 PM Revision a3c60cd4 (cdm-vaadin): Merge branch 'creditor'
- 06:47 PM Revision 29aeffbe (cdm-vaadin): EditConceptRelationshipComposite : show notification only when creating concept relationship
- NewTaxonBaseComposite : added second sec. combobox for the case of creating synonyms
INewTaxonBaseComponentListener, ... - 06:21 PM Revision 7ab20b8f (taxeditor): minor
- 05:53 PM Revision dfe03eb9 (cdm-vaadin): setting authentication in security context of UI thread
- 05:37 PM Revision 3b60782b (cdmlib): fix remove hybrid method (related to #2576)
- 05:26 PM Revision 2c5006d4 (cdmlib): added not blank handling for potential notEmpty strings #4653
- 05:24 PM Revision 162987d3 (cdmlib): added not blank handling for potential notEmpty strings #4653 , solving compilation issues
- 05:22 PM Revision dadec8d0 (cdmlib): Partial fix of Ticket #4728
- 05:18 PM Revision bc89eb0d (cdmlib): added not blank handling for potential notEmpty strings #4653
- 05:17 PM Revision 35fc6f00 (taxeditor): Partial fix of Ticket #4728
- 05:10 PM Revision 0a85acb5 (cdm-dataportal): fixing main menu padding and margin
- 05:02 PM Revision d189c473 (cdm-dataportal): ignore
- 04:55 PM Revision 519172a6 (cdm-dataportal): index on develop: e3925f9 Merge branch 'feature/#4837' into develop
- 04:35 PM Revision faa30aca (taxeditor): - implemented and added recommended modifier section to Feature DetailView (#4448)
- 04:35 PM Revision 949b2834 (taxeditor): - fixed possible widget is disposed exception
- 04:19 PM task #4846: update the integration portals to use the zen_basetheme
- I switched the portals back to the Garland based themes and created dumps which can be found in `/var/lib/cdm/testdb/...
- 03:34 PM task #4846 (In Progress): update the integration portals to use the zen_basetheme
- the selenium test only can work with one base theme which currently is _Garland_.
So we have two options:
1. adap... - 11:30 AM task #4846 (In Progress): update the integration portals to use the zen_basetheme
- The following integration portals should use the zen_basetheme, since the test and production portals are also switch...
- 03:25 PM bug #4849 (New): zen_basetheme custom icon size intially not recognized
- the size of a supplied user defined icon is not recognized when the icon is added the first time. This causes the ti...
- 01:43 PM Revision 524f0def (cdmlib): minor
- 01:41 PM Revision 07744a2a (cdmlib): fix move description element bug #4806
- 01:05 PM bug #4847 (In Progress): Problem with session attributes for a UI used in different CDM Instances
- This is a general problem with the vaadin framework deployed on a CDM Server running multiple CDM Instances.
Sin... - 12:28 PM Revision 93fcde18 (cdm-vaadin): fix for #4844
- CdmVaadinAuthentication : new class used for authentication
AuthenticationPresenter, AbstractAuthenticatedUI, CdmVaad... - 11:49 AM Revision 038d45ab (cdmlib): minor
04/28/2015
- 06:40 PM Revision b95728c3 (taxeditor): partial Fix of #4728
- 05:16 PM Revision a55772e7 (taxeditor): - implemented and added statistical measures section to Feature DetailView (#4448)
- 04:19 PM Revision 31645e4f (taxeditor): Fix Ticket #4729
- 04:19 PM Revision 64750913 (taxeditor): - fixed potential NPE (#4448)
- 04:03 PM feature request #4837 (Resolved): responsive layout & theme
- Caroline, Florian and Günther, please review the changes that have been made so far.
You will need to refresh the dr... - 03:51 PM feature request #4837: responsive layout & theme
- after I upgraded the zen_dataportal base theme to zen theme 7.x-5.5 and some improvements for small display sizes git...
- 03:50 PM Revision 8080684e (taxeditor): Forgot to check in for fix geographical Scope
- 03:24 PM Revision 3831e623 (taxeditor): Fix Ticket #4592
- 02:59 PM Revision 9f69b92d (taxeditor): - implemented geo scope detail section (#4592)
- 01:59 PM Revision 7a8e7c22 (taxeditor): Fixed Ticket #4447 and #4535
- 01:39 PM Revision d22d668e (taxeditor): - added measurement unit section to Feature DetailView (#4448)
- - adapted QuantitativeData DetailsView to only show recommended MeasurementUnits
- 01:15 PM Revision e3925f9c (cdm-dataportal): Merge branch 'feature/#4837' into develop
- 01:14 PM Revision 194492f7 (cdm-vaadin): updated version in pom file to 7.4.4 and replaced usage of org.json with elemental.json
- Two issues seen (needs more investigation) :
- org.eclipse.jetty.io.EofException seen when accessing UI using jetty 9... - 01:13 PM Revision c2fe39b9 (cdm-dataportal): minor
- 12:56 PM Revision c59e1cf1 (taxeditor): widget is disposed exception ticket (#4657)
- 12:56 PM Revision f3434149 (cdm-dataportal): improvements for small display sizes
- 12:56 PM Revision 92af12c8 (taxeditor): minor
- 12:42 PM Revision 669240ca (cdm-dataportal): upgrading also the template files to 7.x-5.5
- 11:27 AM Revision 0312ac03 (cdm-vaadin): Merge branch 'creditor'
- 10:38 AM Revision cab4c925 (taxeditor): - added state vocabulary section to Feature DetailView (#4448)
- - implemented measurement unit section
- 10:32 AM Revision 5b2505f1 (cdm-vaadin): StatusComposite : using new added context menu addon instead of vaadin actions
- ConceptRelationshipView : setting classification combobox to read only for classifications from url
- 10:30 AM Revision f2e53f06 (cdm-vaadin): added context menu addon : https://vaadin.com/directory#!addon/contextmenu
- 10:27 AM Revision 2bbdcbba (cdm-vaadin)
- 09:26 AM Revision 0484f1af (cdm-dataportal): sucessfuly upgraded the zen_dataportal base theme to zen theme 7.x-5.5
- 08:53 AM Revision 98cc9b84 (cdm-vaadin): async switched off
04/27/2015
- 06:00 PM Revision acd88631 (cdmlib): fix XmlType.propOrder #4840
- 05:47 PM Revision 7d39593c (cdmlib): implement bidirectionality on CategoricalData-StateData #4840
- 04:57 PM Revision 4508543c (taxeditor): - added collection section for state vocabularies (#4448)
- 04:53 PM Revision a7f52c55 (cdmlib): fix relationship type for CategoricalData-StateData #3382
- 04:36 PM Revision 1b3cfe7c (taxeditor): - filtered vocabularies by term type (#4448)
- 04:23 PM Revision 837ed3ca (cdmlib-apps): enhanced mapping for distribution status
- 04:22 PM Revision 05cbcf16 (cdmlib): updating vaadin version
- 02:33 PM Revision 21a1bf2d (cdm-vaadin): EditConceptRelationshipComposite, EditConceptRelationshipPresenter : hack for checking relationship rules (currently only for congruence)
- INewTaxonBaseComponentListener, NewTaxonBaseComposite, NewTaxonBasePresenter : Setting default secundum when addin ta...
- 01:15 PM Revision 4bdae8e0 (cdm-vaadin): * Fixed selection view and replaced twin selection component with combobox
- * fixed display issue with deproxy method
- 11:59 AM Revision b7f82569 (cdmlib-apps): fixed class cast exception in importer
- 11:35 AM Revision a49946db (taxeditor): - imlemente vocabulary combo selection element (#4448)
- 10:42 AM feature request #4837 (Closed): responsive layout & theme
- The cdm_dataportal base the is based on the zen theme which is supposed to be responsive and adaptive to smart phones...
- 10:30 AM Revision 3ccb70d0 (taxeditor): - fixed title for Uses view part
04/24/2015
- 04:21 PM Revision 1a3e979c (cdm-vaadin): *added new config window
- *added settings icon
*removed edit button from toolbar
*added double click listener
*added sql container and changed ... - 01:47 PM Revision f638efaa (taxeditor): fix NPE bug and termloading bug for Usage Records #4247
- 01:15 PM feature request #4294: order of map legend entries conforms to term order
- i created a new ticket for the problem with the distribution status present : #4822
- 09:58 AM feature request #4294: order of map legend entries conforms to term order
- Replying to [[comment10|a.kohlbecker]]:
> Replying to [[comment9|e.raab-straube]]:
> > Looks like fixed: order is o... - 12:57 PM Revision 60e4855d (cdm-dataportal): adding support for the develop branch - final fix
- 12:55 PM Revision 61e7be0e (cdm-dataportal): adding support for the develop branch
- 12:51 PM Revision 639b6efe (cdm-dataportal): adding support for the develop branch
- 11:46 AM Revision ea5dc742 (cdmlib): Changed order of PresenceAbsence terms according to E+M ordering #3906
- 11:29 AM Revision 36b2a29d (cdm-vaadin): revert authentication check
- 11:08 AM Revision 0f5dbbcc (cdm-vaadin): edit/styles.scss : indent for synonyms
- ConceptRelationshipPresenterTest : updated json to include direction
- 10:46 AM bug #4821 (Closed): Changing order of terms not possible
- When trying to change the order of an ordered term vocabulary (e.g. Presence Absence Term) by moving an existing term...
- 10:37 AM Revision ce72b8c3 (cdmlib): Remove left join from listNamedAreasInUse #4820
- 09:57 AM bug #4048: Changing the name in free text editor does not refresh the taxon navigator view
- This should also happen with the functionality to choose a different name for an existing taxon (#4393)
- 09:54 AM Revision c9b1bd8b (taxeditor): - added functionality to choose the taxon name for a taxon in the DetailsView (#4393)
- 09:16 AM Revision 46c38373 (taxeditor): - Added browse button to media section which allows to choose the media from existing ones (#2385)
- 09:06 AM Revision 255327ca (cdmlib): - order character data by key name
- 08:59 AM Revision 8d0ec6cf (taxeditor): - reduced size of text field for textual data description elements
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