Activity
From 11/17/2014 to 12/16/2014
12/16/2014
- 09:29 PM Revision 905b7269 (cdmlib): add xslx test in io
- 09:05 PM Revision 60b96820 (cdmlib): minor
- 08:54 PM feature request #4580 (In Progress): Improve SchemaUpdater
- ~~Schema Updater should return a Result instead of pure boolean.~~ #6689
Also we may want to register each succ... - 08:26 PM feature request #4209: Better handling of labels, abbreviations and descriptions in ISO 3166-1 (country) terms
- Move all unassigned modelling tickets to next major release
- 08:26 PM feature request #4206: Create vocabulary for former countries
- Move all unassigned modelling tickets to next major release
- 08:26 PM feature request #4137: Discuss "Material Sample" as new SpecimenOrObservationType
- Move all unassigned modelling tickets to next major release
- 08:26 PM feature request #3972: Strictly validate username to not null and not empty
- Move all unassigned modelling tickets to next major release
- 08:26 PM task #3967: Rethink original spelling strategy
- Move all unassigned modelling tickets to next major release
- 08:26 PM bug #2344: UML lets OriginalSourceBase inherit from Cloneable
- Move all unassigned modelling tickets to next major release
- 08:23 PM feature request #3925: Unplaced and excluded to TaxonNode
- Move all unassigned modelling tickets to next major release
- 08:23 PM feature request #3379: Add all hibernate validations
- Move all unassigned modelling tickets to next major release
- 08:23 PM feature request #3363: dagger (Totenkreuz) after extinct and fossil taxa
- Move all unassigned modelling tickets to next major release
- 08:23 PM feature request #2949: Simplify TaxonName classes
- Move all unassigned modelling tickets to next major release
- 08:23 PM feature request #2506: (Type-) Specimens may need status
- Move all unassigned modelling tickets to next major release
- 08:23 PM feature request #2302: Include ISO-3166 numeric codes to Country
- Move all unassigned modelling tickets to next major release
- 08:23 PM feature request #4499: Implement fields for typical StatisticalMeasurementValues
- Move all unassigned modelling tickets to next major release
- 08:23 PM feature request #4311: Improve person representation in CDM
- Move all unassigned modelling tickets to next major release
- 08:23 PM feature request #4028: Distinguish Features and Characters
- Move all unassigned modelling tickets to next major release
- 08:23 PM feature request #3958: Handle CDMPreference table
- Move all unassigned modelling tickets to next major release
- 08:23 PM feature request #3955: Are TermVocabularies URIs needed
- Move all unassigned modelling tickets to next major release
- 08:23 PM feature request #3707: Implement Measurement Unit in common Ontology (e.g. QUDT)
- Move all unassigned modelling tickets to next major release
- 08:23 PM bug #3658: Update Nomenclatural code for datasources
- Move all unassigned modelling tickets to next major release
- 08:23 PM task #3547: Remove size of test data where possible
- Move all unassigned modelling tickets to next major release
- 08:23 PM feature request #2335: Make WorkingSet IdentifiableEntity
- Move all unassigned modelling tickets to next major release
- 08:23 PM feature request #1580: Doubtful flag or presence attribute for specimen in collection
- Move all unassigned modelling tickets to next major release
- 06:50 PM Revision a9d61bfa (utis-core): adding annotations to the generated model classes with the maven-jaxb2-plugin
- 04:14 PM Revision 7c01d7d7 (cdmlib-apps): add flora guianas to BGBM instance updater
- 03:16 PM Revision 79107c62 (cdmlib): - added comment
- 03:11 PM Revision bba9e555 (cdmlib): - fixed deep delete recursion bug
- - fixed tests
- 03:00 PM Revision 8343ec26 (cdm-vaadin): fixed launch configuration
- fixed layout problems
- 02:20 PM Revision 0a1a8181 (utis-webapp): updating providers in index.html and running requests in multiple parallel threads
- 02:17 PM Revision 21580424 (utis-core): toString method for ServiceProviderInfo + duration field for response objects
- 01:30 PM Revision 5185e511 (cdm-vaadin): updated version
- 12:29 PM Revision dee0fd61 (utis-core): adding status to TnrResponse & refactoring construction of TnrResponse into TnrMsgUtils
- 11:25 AM Revision 203dc822 (cdm-vaadin): added a simple ui just to check that vaading works
- 10:58 AM Revision 70c8afce (utis-core): adding documentation, TODO and litte refactoring
- 10:34 AM Revision 7bfcd973 (taxeditor): - added option for deep delete (with children) to DerivateEditor
- 10:33 AM Revision 6a1330fd (taxeditor): - added context menu option to create a new FieldUnit in DerivateEditor
- 10:32 AM Revision 88b4ec59 (cdmlib): - extracted deepDelete tests to own java class
- - reduced exception logged in DeleteResult
- 09:10 AM Revision 15fe1e4e (cdm-dataportal): avoiding chmod during delpoyment of the maven site
12/15/2014
- 10:19 PM Revision b999f662 (cdmlib): disabling dependencyLocationsEnabled option of the maven-project-info-reports-plugin to speed up site building
- 06:25 PM Revision b1f3fc31 (cdmlib): refactor validation classes
- 06:15 PM Revision 71c29c58 (taxeditor): Snapshot branch for version 3.4.1-SNAPSHOT
- 06:15 PM Revision 0393a168 (taxeditor): Updated version in config files to 3.4.1-SNAPSHOT
- 05:58 PM Revision 77e098a2 (cdmlib): minor
- 05:37 PM Revision 52a70f7b (taxeditor): Updated version in config files to 3.4.0
- 05:33 PM bug #4573 (Closed): Handle duplicate username, group or grantedAuthority correctly
- Since 3.4 it is not allowed to create users, groups or GrantedAuthorities with non-unique username, groupname or Gran...
- 05:12 PM Revision a95d0ed3 (cdm-server): adding note on deployment user
- 05:07 PM Revision 80d42373 (taxeditor): - changed order of file extension for excel import (fixes #3971)
- 04:57 PM Revision 996c0a9d (cdm-dataportal): adapting delployment script to modified server configuration
- 04:56 PM Revision 9b51395d (taxeditor): - commented error logging for ImageInfo loading (#4385)
- 04:08 PM feature request #4570 (New): Add vocabulary for Specimen Description Features
- see also #3620 last comment and #4569.
- 03:46 PM Revision da275eb2 (cdmlib): site-delpoy chmod = false
- 03:23 PM Revision 008ae587 (cdmlib-apps): cleanup RoteListeDbTaxonImport
- 03:22 PM Revision e0a534fc (cdm-server): removing chown commands
- 03:21 PM Revision ca593103 (cdm-vaadin): removed WEB-INF from list of sources for building war.
- added EDIT maven repo and wagon extensions to allow deployment
- 03:16 PM Revision 71b6388f (cdm-server): reducing log level
- 03:16 PM Revision d9875e4c (cdm-server): changing ssh host configuration
- 02:44 PM Revision c5cd9ab2 (taxeditor): - set sample designation to null when text is empty
- 02:42 PM Revision f99c398c (cdmlib-apps): update pom for eflora, pesi & app-import to 3.4.1
- 02:41 PM Revision 08d03036 (taxeditor): - allow creation of derivates only when editor is not dirty
- 02:18 PM Revision ab04087e (cdm-vaadin): moved all jetty + cdmlib related stuff (except web.xml) to test
- 02:17 PM Revision cf9586f2 (taxeditor): added a new propertytester to check if the editor is connected to database
- hide popupmenu in taxon navigator view if not connected to database
- 02:03 PM Revision 7b49a52c (cdm-server): [maven-release-plugin] prepare for next development iteration
- 02:03 PM Revision 76414de2 (cdm-server): [maven-release-plugin] prepare release cdm-server-3.4.0
- 01:55 PM bug #4566 (Worksforme): check encoding for labels in DetailsView
- For exampĺe in Details View for DnaSampĺe -> Preservation Temperature
- 01:52 PM Revision 4cc85da1 (cdmlib): add original label info to specimen facade #4218, #4565
- 01:46 PM Revision a30a8cee (taxeditor): - set background color of uneditable text field
- 01:46 PM Revision dcd123e3 (cdmlib): [maven-release-plugin] prepare for next development iteration
- 01:46 PM Revision 6ff62c66 (cdmlib): [maven-release-plugin] prepare release cdmlib-parent-3.4.0
- 01:33 PM Revision d3cd098b (taxeditor): - adpated to cdmlib changes
- 01:17 PM task #4564 (New): [Post 3.4] Check if originalLabelInfo is handled correctly in CdmDataPortal
- we have a new field originalLabelInfo. Please check if portal is handling this correctly or implement correct handlin...
- 01:12 PM Revision 46dd5dda (taxeditor): disable checklist editor initially
- 01:06 PM Revision 6f2bf4d5 (taxeditor): - removed unused text field
- 01:00 PM Revision 5188d906 (cdmlib): - fully implemented deep delete (child derivates)
- - added tests
- 12:55 PM Revision c52a98a0 (cdm-vaadin): changed version to match cdmlib.
- changed dependency library to provided scope.
changed maven jetty version to the eclipse one
moved widgetset to vaadi... - 12:48 PM Revision 274eab66 (cdmlib-apps): last changes for bfnXmlImport
- 12:46 PM Revision 1bdbfb0f (cdmlib): minor
- 12:29 PM Revision 340b3b05 (cdmlib): add username, groupname and GrantedAuthority deduplication #4102
- 11:37 AM Revision b96d9389 (cdm-dataportal): adapting test to new bibliography
- 11:26 AM Revision efa65b66 (cdmlib): turning java code level back to 1.6 to investigate existing problems
- 11:25 AM Revision 07012f35 (taxeditor): upgrade poi to 3.10-FINAL and add ooxml functionality
- 11:22 AM Revision 65df455c (cdm-vaadin): updated the test dataset to match the new schema
- 11:22 AM Revision 46dba369 (cdmlib): more logging output
- 11:21 AM Revision e25516d8 (cdmlib): typo
12/13/2014
12/12/2014
- 05:47 PM Revision 17ed092e (cdmlib): add poi-ooxml and upgrade to 3.10-FINAL
- 04:50 PM Revision f37a0594 (cdmlib): minor
- 04:25 PM Revision a7621039 (cdmlib): javadoc for Amplification and AmplificationResult
- 04:11 PM bug #4544: EntitySelectionElement for AgentBase.class should also return Institutions
- I don't think that we have many places where we do really need all 3 types of agents. But it is a good idea to check ...
- 03:59 PM Revision ccbb86ca (cdmlib): minor
- 03:13 PM Revision 70b6f412 (taxeditor): chnaged description for LanguagePrefrence menu
- 03:09 PM Revision ddcbd609 (taxeditor): fixed ticket #4367
- 03:03 PM Revision 9d63eb10 (taxeditor): Renamed classes to match the new order in PreferenceMenu
- 02:43 PM Revision 731facea (taxeditor): Changed default language to language and changed former Language pane to Representation pane.
- 02:17 PM Revision 6c288cd5 (cdmlib): added unit test for derived unit facade with parent but no field unit #4532
- 01:58 PM Revision 8b2b8c56 (cdm-dataportal): adapting more tests to conform to new footnore system for sources
- 01:58 PM Revision 28bdcc2f (cdm-dataportal): adapting test to conform to new footnore system for sources
- 09:41 AM Revision c36bd929 (cdmlib): - implemented isDeletable() and delete()
- - fixed test XML files and tests
- 12:50 AM Revision 3214df3b (cdmlib): fix Occurrence test
12/11/2014
- 09:35 PM Revision b463980c (cdmlib): - added isDeleteMolecularData flag to configurator
- 09:35 PM Revision c05bb77e (taxeditor): - use labelCache instead of description for amplification labeling
- 09:35 PM Revision b9db5d67 (cdmlib): - use labelCache instead of description for amplification labeling
- 09:34 PM Revision 3d611097 (cdmlib): - change visibility of createTestDataSet to public
- 09:33 PM Revision 74407428 (taxeditor): - fixed possible null label
- 09:32 PM Revision 68ee041d (cdmlib): - change visibility of createTestDataSet to public
- 05:01 PM Revision 31cadd5d (cdmlib-apps): add new test server DNS
- 05:01 PM Revision 52002c73 (taxeditor): merge from trunk
- 04:29 PM Revision c6423b90 (cdmlib): test for Amplification labelCache
- 04:19 PM Revision 4dad1581 (taxeditor): - update label cache
- 04:12 PM Revision b4c6fd16 (utis-webapp): separate logging config for tests
- 04:11 PM Revision 94d718f7 (utis-webapp): better loggind and adding WORMS as further provider
- 04:07 PM Revision 1b2e403a (cdmlib): - organized imports
- 04:02 PM Revision 73518da2 (cdmlib): implement Amplification.labelCache generation
- 03:57 PM Revision feb81cbe (taxeditor): - adapted details views and wizards to cdm changes (amplifaction + amplification result)
- - added missing parameters to details views
- 03:51 PM Revision 747a744e (cdmlib): - added cascade saving for amplification result
- - made constructor protected to avoid JavaAssistEnhancementException
- 03:39 PM Revision 04a7786b (utis-webapp): adding support for fitering subproviders
- 03:38 PM Revision f1d047a2 (utis-webapp): experimetal use of ClassificationMixIn in SpringMVCConfig - not working
- 03:37 PM Revision 9dbf3936 (utis-webapp): adding experimental jackson mixing for type classificatoin
- 03:36 PM Revision 28390832 (utis-webapp): readme in markdown
- 03:35 PM Revision 098b255c (utis-webapp): updating to lastes drf-workflow version; configuring mvn eclipse plugin
- 03:30 PM Revision ab739787 (cdmlib): doc
- 03:29 PM Revision 2ab8cfdd (cdmlib): handle duplicates in identifier list
- 03:20 PM Revision dadca05a (utis-core): model changes: adding accordingTo to taxon, classification as global type; removing useless use flag from ServiceProviderInfo; renaming url to documentationUrl in TaxoRESTClients
- 02:42 PM Revision 5d5e8580 (cdmlib-apps): adapt app-import to model 3.4.1
- 02:37 PM Revision 07199bfc (cdmlib-apps): adapt pesi to model 3.4.1
- 02:28 PM Revision f89e8676 (cdmlib-apps): adapt eFlora to model 3.4.1
- 02:23 PM Revision 6b19b1df (cdmlib-apps): add yourkit repository to app-import
- 02:20 PM Revision f0fb217a (cdmlib-apps): add yourkit repository to pesi & eFlora
- 02:10 PM Revision 4b32abac (cdmlib-apps): add maven-build-plugin infos to poms in cdmlib-app
- 02:04 PM Revision 0a79de20 (cdmlib-apps): add mvne compiler plugin info to eFlora
- 01:58 PM Revision 00c85a20 (cdmlib-apps): add java code level 1.7 to pesi, app-import and xper-integration
- 01:55 PM Revision c70596a5 (taxeditor): ##3890
- 01:50 PM Revision 8d612ea9 (cdmlib-apps): add java code level to eflora pom
- 01:44 PM Revision f4ba7f73 (cdmlib): minor
- 01:39 PM Revision f2f592e3 (cdmlib): updated webapp h2 test database
- 01:33 PM Revision 881a1d56 (cdm-vaadin): moved it to backup
- 01:06 PM Revision feb7a534 (taxeditor): - temporarily commented compile errors
- 01:03 PM Revision da005e87 (taxeditor): - adapted to 3.4.0 cdm changes
- 12:11 AM Revision 48055d22 (cdmlib): minor
- 12:07 AM Revision acdad405 (cdmlib): solve identifier conflict
- 12:02 AM Revision bd36adbf (cdmlib): merge 3.4.1 into trunk
12/10/2014
- 11:23 PM Revision c2c7b79b (cdmlib): Bidirectional identifier handling
- 11:22 PM Revision b1e7575d (cdmlib): latest changes to AmplificationResult and DnaQuality
- 10:40 PM Revision af44092f (cdmlib): updating DnaQuality with typedPurificationMethod to allow both #4434 , #4552
- 09:46 PM Revision 59048086 (cdmlib): conflict fiexes after merging trunk
- 06:03 PM Revision 46d0131b (taxeditor): moving tests from cdmlib to the test project
- 06:02 PM Revision 3bf5ac6d (taxeditor): temporarily resolving conflict with trunk
- 06:01 PM Revision dccac9cf (taxeditor): added session manager calls to the polytomous key views
- 06:01 PM Revision 80de230c (taxeditor): updated manifest for deleted test dir
- removed unnecessary commit root entity methods in session and session manager
- 05:59 PM Revision 5da981b0 (taxeditor): moving tests to the eu.etaxonomy.taxeditor.test project
- 04:32 PM Revision 93fa4cda (taxeditor): - removed unused menu item
- 04:28 PM Revision 7cad7934 (cdmlib): merge-update from trunk
- 04:27 PM Revision c7322065 (cdmlib): -fixed possible NPE (fixes #4532)
- 04:25 PM Revision c9d7b4eb (cdmlib): merge-update from trunk
- 03:47 PM Revision efacf7a5 (cdmlib): update scripts for splitting Amplification and adding labelCache and reversecomplement
- 03:27 PM Revision d06ba760 (cdmlib): - added abstract method createTestData() to CdmIntegrationalTest
- - method should be used for generatin test XML data sets
- making it abstract and enforcing implementation in sub c... - 03:24 PM Revision 92755d03 (utis-core): renaming AcceptedName to Taxon and Synonym class no longer nested in TnrResponse
- 03:11 PM Revision 38ca58a2 (utis-core): merging properties of class Name into TaxonName
- 02:18 PM Revision d90a6c9f (taxeditor): - added publish flag to DetailsView for SpecimenOrObservationBases (fixes #3951)
- 01:57 PM Revision 2f808d99 (utis-core): schema refactoring: renaming properties
- 01:22 PM Revision f020ab79 (taxeditor): fixed #4523
- 01:10 PM Revision 040d6554 (taxeditor): - added possibility to also add a person as nomenclatural author (fixes #4301)
- 12:56 PM Revision 8da7dbc3 (utis-core): renaming taxonStatus to taxonomicStatus
- 12:55 PM bug #4545 (Closed): Implement TeamOrPersonBaseSelectionDialog
- This is basically what the AgentSelectionDialog currently does but the search results are not filtered for only TeamO...
- 12:42 PM Revision 2200da88 (taxeditor): - fixed class cast to more generic type
- 12:13 PM Revision 3de91ced (taxeditor): Fix for ticket #4519
- CdmDataSourceRepository : added a new method to create default h2 data source
eu.etaxonomy.taxeditor.cdmlib : updated... - 11:59 AM bug #4544 (New): EntitySelectionElement for AgentBase.class should also return Institutions
- Currently, it only returns Teams or Persons.
Be sure to check all the places where it is currently used and deci... - 11:49 AM Revision e54c04b0 (cdmlib): - fixed testLoadData()
- - the field unit element in the XML needed to have the derivedFrom parameter
- 10:36 AM Revision 7ba2b0d5 (cdmlib): - added isPublish() method to facade
- 10:28 AM Revision 02121ef2 (taxeditor): - create an empty media for MediaSpecimen (fixes #4543)
- - fixed possible NPE
- 10:09 AM Revision d969af0f (taxeditor): - refactored access to static method
- 10:08 AM Revision a31abd30 (taxeditor): - added constant Window.OK
- 10:01 AM Revision bf9d1425 (taxeditor): - reverted comment
12/09/2014
- 11:29 PM Revision a2c31205 (cdmlib): JAXB annotations for amplification results
- 10:56 PM Revision af1cc31c (cdmlib): preliminary set OccurrenceServie.loadData test to ignore, as data is not loading correctly
- 10:55 PM Revision 1686096f (cdmlib): preliminary set OccurrenceServie.loadData test to ignore, as data is not loading correctly
- 10:26 PM Revision 4c96041a (cdmlib): latest changes for AmplificationResult
- 06:21 PM Revision 25864e07 (taxeditor): merge from trunk
- 06:18 PM Revision 2e4de8d1 (taxeditor): last fix for revision number of classpath
- 06:05 PM Revision d59e5382 (taxeditor): merge from trunk
- 06:05 PM Revision 9fed8b2f (taxeditor): deleting remoting project and merge from trunk
- 06:04 PM Revision 7725f420 (taxeditor): too many fixes on classpath for today
- 06:01 PM Revision e8aa1aab (taxeditor): added session binding committing to polytomous key editor
- 05:58 PM Revision 9af2fbbd (taxeditor): fixed classpath
- 05:56 PM Revision c8cd88d1 (taxeditor): forgot the test files in the last commit
- 05:55 PM Revision 58afb673 (taxeditor): moving all source files from the remoting project to the cdmlib project
- 05:52 PM Revision f81f1e92 (taxeditor): changed .classpath to be compliant with trunk
- 05:34 PM Revision bdfdcda2 (cdmlib): add labelCache to Amplification #4542
- 05:33 PM Revision a491689c (cdmlib): some bugfixes to new Amplification modelling #4541
- 05:33 PM Revision bee14682 (taxeditor): Added changes from redlist taxonomic editor branch
- * fixes Language bug for menue
* added Perspective for checklist
* fixes reload issues on checklist editor - 05:33 PM Revision c53a25ad (taxeditor): updated packages for remoting source
- 05:28 PM Revision 7baf9c1b (taxeditor): changes to be compliant with trunk for reintegration
- 05:21 PM Revision 13c5d3f0 (taxeditor): merged trunk into branch
- 05:09 PM Revision fcab75e4 (cdmlib): some adaptations after trunk merge to 3.4.1
- 05:03 PM Revision af283637 (cdmlib): merge-update from trunk
- 04:52 PM Revision a5e9f7de (taxeditor): - added special case handling for DerivateEditor so that the DetailsView only show data of the DerivedUnit and the FieldUnit #4474
- 04:46 PM Revision 5277a2a3 (taxeditor): - fixed possible ClassCastException (#4533)
- 04:46 PM Revision 2d717c7c (cdmlib): dna Quality purification method
- 04:45 PM Revision 45389cbe (cdmlib): label for PAT voc
- 04:44 PM Revision 395ccc97 (cdmlib): separate Amplification and AmplificationResult.java #4541
- 04:34 PM Revision dfe6e46f (taxeditor): - added reference to ticket in comments
- - keep on displaying view contents when selecting the view itself
- 04:33 PM Revision bcad19b9 (taxeditor): MessagingUtils : added new method for a warning dialog when not connected to a datasource
- CdmStore : changed warning dialog to new method mentioned above
LanguagePreferencePage, PreferencesUtil, AbstractMenu... - 03:29 PM Revision aeeab9d0 (taxeditor): removed throwing of runtime exception since we already have a warning (#4365)
- 03:08 PM feature request #4538 (New): Enable creation of taxon without classification
- It should be possible via File - New - Taxon.
Currently it is only possible via taxon bulk editor which uses a s... - 02:37 PM Revision 897412ca (taxeditor): fixed ticket #3763
- 01:07 PM Revision 2f9a2a42 (utis-core): temporary switch to test server
- 01:04 PM Revision b572c24e (taxeditor): fixed ticket #1639
12/08/2014
- 06:28 PM Revision 9797b698 (taxeditor): clean up
- 04:55 PM Revision c9a796bb (cdm-vaadin): Added spring related repository to pom.xml, in order to let this poject build via maven
- 04:43 PM Revision 3fd7eb7e (taxeditor): moving code to remoting project
- 04:27 PM Revision 73c607ab (cdm-dataportal): updating to selenium driver 2.44.0
- 03:49 PM Revision c0d06a55 (cdm-dataportal): adding missing plugin version numbers
- 03:39 PM Revision f5827f84 (cdm-dataportal): setting code compliance to 1.7
- 03:00 PM Revision a4b2bf75 (utis-webapp): updating terms of service
- 01:49 PM Revision 3b57adbc (taxeditor)
- 01:29 PM Revision e6ea6083 (taxeditor)
- 01:27 PM Revision 8c84bc10 (cdmlib): bug fix
- 01:27 PM Revision 9de237d7 (cdmlib): CdmUpdater can run on multiple databases supplied as comma separated list
- 01:24 PM Revision 7add6872 (taxeditor): Fixed Bug #4531
- 01:11 PM Revision 695fb39f (taxeditor)
- 10:21 AM Revision 8b5f52b5 (taxeditor): cleaning up
- 10:20 AM Revision dc80da32 (taxeditor): cleaning up
- 10:09 AM Revision f55638a3 (taxeditor)
12/05/2014
- 05:13 PM Revision 4561dd9c (taxeditor): Added a reload function so that the checklist editor doesn't need to be relaunched after adding terms.
- 09:44 AM Revision deebf33e (taxeditor): Menu update in AlignmentEditor moved to according listener.
- Copyright information added.
12/04/2014
- 08:19 PM Revision c7c01528 (taxeditor): Removed unused imports.
- 08:18 PM Revision 70eb3fee (taxeditor): Buttons for toggling "insert/overwrite" and "insert left/right" in toolbar replaced by commands that can be updated by the AlignmentEditor.
- 05:53 PM Revision 572950b2 (taxeditor): - reverted to previous version due to compilation error
- 04:00 PM Revision 69c08a27 (taxeditor): - added service method to get descriptions which have a specimen set as describedSpecimen
- - added test which fails because the XML is loaded incorrectly
- 04:00 PM Revision 404c0036 (cdmlib): - added service method to get descriptions which have a specimen set as describedSpecimen
- - added test which fails because the XML is loaded incorrectly
- 03:30 PM Revision 8191b00a (taxeditor): - added delete result as warn message
- 03:29 PM Revision c1d8fdfa (cdmlib): - re-added hibernate annotation
- 02:17 PM bug #2578: Improve "move synonym"
- the implementation should be correct now and can be used by drag&drop (r22279 und r22252)
- 02:15 PM Revision 1b8e2548 (taxeditor): fix drag&drop for synonyms to another accepted taxon
- 01:55 PM Revision 8cd3690c (cdmlib): -removed hibernate search annotation (copy&paste error)
- 12:25 PM Revision 8935dbaa (taxeditor): MultipleAlignmentsContainer now used in AlignmentEditor.
- Test consensus sequence and consensus sequence data area added.
- 10:38 AM Revision 3cf116be (cdmlib-apps): remove InnoDB from BgbmInstancesUpdater
- 10:37 AM Revision c908f849 (cdmlib-apps): minor
- 10:36 AM Revision d42926ce (cdmlib): minor
- 10:35 AM Revision 7a7e883f (cdmlib): use saveOrUpdate in JaxbImport
- 10:27 AM Revision 3e2e342d (taxeditor): - fixed ClassCastException
- 10:02 AM Revision abc0d35a (taxeditor): - adapted to method signature change in cdmlib
- 09:52 AM Revision 944cfe7b (cdmlib): - invoke super method in isDeletable()
- 09:44 AM Revision 96274f18 (cdmlib): - changed service method to retrieve the directly related objects
- - adapted tests
- 09:43 AM Revision b141d6fb (cdmlib): - fixed bidriectionality for DnaSample<->Amplification
12/03/2014
- 11:55 PM Revision 9f976540 (cdmlib): fixing test for SingleReadAlignment and removal of SpecAndObs_Sequence
- 10:13 PM Revision 6571e4e5 (cdmlib): implement SingleReadAlignment.java #4529
- not yet ready
- 10:12 PM Revision e850e1c8 (cdmlib): minor changes
- 10:09 PM Revision ee8303fa (cdmlib): remove Specimen_Sequence table from ddl
- 10:08 PM Revision 7d84de65 (cdmlib): add nextUpdater to 331_34 updater
- 05:07 PM Revision 73cac0e8 (cdmlib): - commented unused field from SpecimenDeleteConfigurator
- - added TODOs for deletion checking for specimens
- added emtpy isDeletable() method - 05:06 PM Revision fe61f73d (taxeditor): merge from trunk
- 05:05 PM Revision a7f43cf4 (cdmlib): - commented unused fields of DeleteResult
- 05:05 PM Revision 97e175e5 (taxeditor): updated tests and added checks to cacher
- 04:39 PM Revision af727c93 (taxeditor): - deleted usage of commented method in cdmlib
- 04:24 PM Revision dea7cd9c (taxeditor): - added command, handler, double click listener to open taxa from associated taxa section in details view
- - caught runtime exception for orphaned taxa
- 04:04 PM Revision 22ef1770 (cdm-vaadin): updated cdm-vaadin launch file to include test classes and jetty.xml file
- 03:49 PM Revision e84b1ba9 (cdm-vaadin): added jetty launch file for cdm-vaadin
- svn:ignored widgetsets dir in src/main/webapp/VAADIN
- 02:16 PM Revision ead0a1ab (cdm-vaadin): initial commit for project cdm-vaadin
- 02:00 PM Revision a53be09c (taxeditor): adapt transientServices to returntype of isdeletable methods
- 01:49 PM Revision 5ddc7eb3 (cdmlib): isDeletable returns DeleteResult
- 01:35 PM Revision 70d41663 (cdm-vaadin): creating a sub repo for the cdm-vaadin wen frontend
- 01:31 PM Revision 93613cac (cdmlib): - implemented bidirectionality for derivation events
- 01:29 PM Revision 01a5514b (cdmlib): some fixes after trunk integration to 341branch
- 01:27 PM Revision e13ba183 (taxeditor): - renamed interface IDerivedUnitFacadeEditor to IDerivedUnitFacadePart
- - show field unit data in NewDerivedUnitBaseWizard
- 01:22 PM Revision ec352541 (cdmlib): merge-update from trunk
- 10:22 AM feature request #4499: Implement fields for typical StatisticalMeasurementValues
- first implementations but commented r22246
- 10:21 AM Revision 61b380b5 (cdmlib): add first version of BigDecimal (still unclear if we want to keep the UserType) #4499
- 10:06 AM Revision 64addc2b (cdmlib): minor
- 10:03 AM Revision ccf1f2f1 (cdmlib): merge PresenceTerm and AbsenceTerm #4521
- 09:47 AM Revision e3bcee2d (taxeditor): - added interface IDerivedUnitFacadeEditor to tag editors that are working with DerivedUnitFacades (e.g. BulkEditor)
- - show field unit data for DerivedUnit when selected in BulkEditor
- 09:36 AM Revision a84f8263 (cdmlib): - added isDeleteFromIndividualsAssociation and isDeleteFromTypeDesignation to SpecimenDeleteConfigurator
- - implemented deletion for above mentioned flags
- added more information to delete result when deleting specimens
... - 09:24 AM Revision ee369c1a (cdmlib): - extended toString() method
12/02/2014
- 12:51 PM Revision efa09cd1 (taxeditor): Output style of PherogramViewPart changed. (Will user defined in future versions.)
- 12:43 PM Revision e5a1b835 (cdmlib): remove TODO
- 12:32 PM Revision 5d7dcbd7 (taxeditor): Missing properties added to CDMAlignmentObjectPlaceholder.
- 11:17 AM Revision 0e88fd5d (cdmlib): - added loadStrategy=CleanSweepInsertLoadStrategy.class to tests to fix test failure
- 10:32 AM Revision ea5eb5e1 (taxeditor): - removed unused imports
- 10:24 AM Revision e97b77c6 (taxeditor): - added preference for displaying associated taxa in specimen details view
- 10:01 AM Revision 3fc39e76 (taxeditor): - added section for associated taxa (IndividualsAssocation, TypeDesignation) to DetailsView for specimen
- 09:58 AM Revision 056e4137 (taxeditor): - added amplification description to single read label in hierarchy
- - added marker to update method of amplification description
- 09:56 AM Revision 77778ce2 (taxeditor): - refactored/cleaned up commands extension point
- 09:55 AM Revision b82a6bfc (cdmlib): - added DISTINCT to HQL query for associated taxa
- - created and used XML data source in occurrence service test
12/01/2014
- 02:48 PM Revision d1fcc861 (cdmlib): - added xml resources for tests
- 02:47 PM Revision b71032bb (cdmlib): - fixed bidirectional mapping
- 12:35 PM Revision bfe54fd9 (taxeditor): fix the problem of referencingObjectsView and deletion in bulk editor
- 11:30 AM Revision b0ab81b7 (taxeditor): - added missing service method to transient service
- 10:43 AM Revision 9f7e89bc (taxeditor): - refactored LanguageStringWithLabelElement (isMultiLine flag)
- 10:26 AM Revision e03ab30b (taxeditor): - added notes (annotations) to SingleRead details view
- 10:26 AM Revision 2a511019 (taxeditor): - layout enhancement
- 10:25 AM Revision 365a2c1e (taxeditor): - added barcode to MediaSpecimen label
- 10:24 AM Revision 06d8cd12 (cdmlib): - added occurrence service methods to retrieve all taxa that are associated with a specimen:
- - via IndividualsAssociation
- via TypeDesignation
- added test
11/27/2014
- 02:15 PM Revision 1470efb0 (cdmlib): removing old obsolte code
- 01:52 PM Revision 34902b3c (cdmlib): remove FIMXE on protected constructor
- 01:50 PM Revision fbf1cec6 (cdmlib): minor
11/26/2014
- 07:38 PM Revision bb2602e9 (taxeditor): TODO comment added to AlignmentEditor.
- 06:32 PM Revision 2d68aebe (taxeditor): PherogramView renamed to PherogramViewPart to avoid name conflict with LibrAlign component.
- Adjustments to recent changes in LibrAlign on pherogram view components.
- 04:07 PM Revision 11950686 (taxeditor): - fixed possible NPE when opening DerivateView for a taxon when no derivates exist
- 03:37 PM Revision 26abde2f (taxeditor): merge-update from trunk
- 03:31 PM Revision fdb9cd4c (cdmlib): - added TODO comment
- 03:24 PM Revision 4de6126f (taxeditor): Checklist Editor retreives now all PresenceAbsenceTerms by filtering via TermType.PresenceAbsence instead of PresenceAbsenceTerm.class
- 03:20 PM Revision 3177a949 (taxeditor): - activated filter in factual data view for displaying only IndividualsAssociations
- 03:04 PM Revision 724c80be (cdmlib): creationi fo PresenceAbsence Terms
- 02:52 PM Revision 0c41af54 (taxeditor): - removed obsolete Primer page for AmplificationWizard
- - added dnaMarker to amplification designation
- 02:30 PM Revision 589ecf52 (cdmlib): make all defined terms comparable
- 02:25 PM Revision 22084928 (cdmlib-apps): minor
- 02:23 PM Revision 433297e7 (cdmlib-apps): some new JAXB io infos
- 01:50 PM Revision f7acd856 (taxeditor): - re-enabled MediaViewPart for DerivateView (#4475)
- 01:21 PM Revision 46be9511 (taxeditor): - added missing service method to transient service
- 01:19 PM Revision 71f9f770 (taxeditor): - moved extension point for taxon navigator context menu
- - fixed DerivateSearchView layout
- added "disabled" extension point for toggling individual assciations in factual ... - 01:00 PM Revision 22878c8a (cdm-dataportal): moving unused images into separate folder
- 01:00 PM Revision ca7fa7da (cdm-dataportal): fixing #4512 (Corvidae: protologes with mediatype other than image are missing) and using font-awsome icon fa-book for protologues
- 12:47 PM Revision 73e694a1 (cdmlib): - removed BlankDataSet form test
- 12:45 PM Revision 090dd9ba (taxeditor): - set multiline flag for LanguageStringWithLabelElement #2248
- 12:06 PM Revision 7e9949c5 (cdmlib): - removed unused code
- 12:06 PM Revision a6e9cd03 (cdmlib): - implemented service method (and test for it) to get all taxa associated with a single specimen
- 10:35 AM Revision a8c659ac (cdm-dataportal): fixing #4514 (Corvidae: dynabox not working in somce cases)
- 10:29 AM Revision ccc9031c (cdm-dataportal): fixing #4516 (Reference footnotes not shown in text-features)
- 09:54 AM Revision 396701ca (taxeditor): - added clear button to DerivateSearchView
- - made use of cdmlib service to get associated specimen for one taxon (#4506)
- 09:53 AM Revision aebfd8da (cdmlib): - added listAssociatedTaxa() method to occurrence service (non functional)
11/25/2014
- 07:57 PM Revision e4900d3e (taxeditor): Adjustments to recent changes in LibrAlign package structure.
- 07:37 PM Revision c33bb983 (taxeditor): URI property for PherogramView added.
- PherogramViews can be opened by double clicking a pherogram in AlignmentEditor.
AlignmentEditor saves URIs for each p... - 03:23 PM Revision d3825388 (taxeditor): made bug fixes for:
- * disabled rank editing support
* empty values are no longer displayed with a "-"
* Checklist Editor is now activated... - 02:06 PM Revision 8f4eb9ce (cdm-dataportal): implementing #4515 (automatically disable fsi viewer on unsupported devices)
- 02:06 PM Revision ef12d0c6 (cdm-dataportal): typo
- 01:56 PM Revision fd6cdafb (taxeditor): changed classpath to 3.5.0
- 01:33 PM Revision b8548a34 (taxeditor): added checks to makes sure no other exception is thrown within the dialog creation code #4502.
- 01:13 PM Revision be3a43d5 (taxeditor): changed cdmlib version
- 01:09 PM Revision bf4ad8ff (cdmlib): changed version numbers
- 01:02 PM Revision e77ecd48 (cdmlib): create branch to make redlist deployment stable
- 12:04 PM Revision 92a8bb2a (taxeditor): Adjustments to recent changes in LibrAlign package structure.
- 11:57 AM Revision 919bf084 (taxeditor): language display bug should be fixed
- 11:34 AM Revision a8ae8923 (cdm-dataportal): implemented #4504 (suppressed name in source info which have the same name as the current taxon)
- 11:14 AM Revision 255f5734 (cdm-dataportal): refining descriptions for classification filter
- 10:08 AM feature request #4511 (Rejected): Remove white space below EntitySelectionElement
- Remove white space below EntitySelectionElement
- 10:07 AM feature request #4510 (New): Reduce standard height of description text in DetailsView
- On smaller screens you have to scroll down to get to the other sections because the empty text field is taking that m...
- 10:05 AM feature request #4509 (New): Merge Supplemental Data section into DetailsView
- It should be configurable via preferences which sections are visible in the DetailsView.
- 10:02 AM Revision 01b3ade8 (taxeditor): - added context menu entry to taxon navigator to open associated derivates in DerivateEditor
- - added taxon filter to DerivateSearchView (non-functional) (#4506)
11/24/2014
- 05:32 PM Revision ad5252d9 (cdmlib): removed unwanted service field
- 05:28 PM Revision 3ce0fa86 (cdmlib): Fix (more of a hack) for conversation holder problem, subclassing the current servlet and setting the conversation so that it is bound every time a service call is made.
- 04:04 PM Revision 0639ca2a (cdm-dataportal): implementing #4042 (Show URI and DOIs for References)
- 04:04 PM Revision 38b27a36 (cdm-dataportal): installing font-awesome 4.2.0 and implementing function for consitent use
- 04:03 PM Revision 57d513cb (cdm-dataportal): sources as bibliography per feature block
- 04:03 PM Revision ebbdbf60 (cdm-dataportal): fixing bug: taking also the userdefined defaults into account
- 04:03 PM Revision 8c962983 (cdm-dataportal): feature block settings with defaults
- 04:03 PM Revision 57e829ae (cdm-dataportal): updating zen theme to version 7.x-5.5
- 03:23 PM Revision db81978c (taxeditor): latest changes from trunk
- 01:50 PM feature request #3580: Write permission error with temporary cdmserver echache dir
- Replying to [[comment1|c.mathew]]:
> Changed cache folder in settings to user.home/.cdm-server-echache (r18309). Not... - 01:33 PM feature request #3580: Write permission error with temporary cdmserver echache dir
- Seems to be fixed. Can we close this ?
- 01:29 PM feature request #4452: p2 update problem with nebula compositetable dependency
- Moving tickets to 3.4.1 milestone
- 01:29 PM feature request #4246: Allow inserting a new node at the beginning or somewhere else in the Polytomous Key tree
- Moving tickets to 3.4.1 milestone
- 01:29 PM feature request #3746: Implement time period scope for description elements in TaxEditor
- Moving tickets to 3.4.1 milestone
- 01:29 PM task #3603: Remove creation of dummy DefinedTerm when creating new Term related entities
- Moving tickets to 3.4.1 milestone
- 01:29 PM bug #3536: Incorrect last version documentation for Editor
- Moving tickets to 3.4.1 milestone
- 01:29 PM feature request #3337: Correct multiple occurrences of basionym within a homotypic group
- Moving tickets to 3.4.1 milestone
- 01:29 PM bug #2957: running maven site:site for Taxonomic Editor fails
- Moving tickets to 3.4.1 milestone
- 01:29 PM feature request #2380: TaxonNavigator should work with DTO objects instead of full blown cdm instances
- Moving tickets to 3.4.1 milestone
- 11:50 AM Revision e808e65c (cdmlib): setting java source compliance to version 1.7
- 11:47 AM Revision 10c47677 (taxeditor): - added some more molecular parameters to the DetailsView
- 11:16 AM Revision 902350ad (taxeditor): - removed unused code
- 10:12 AM Revision add829e5 (taxeditor): - converted dnaQuality from DefinedTerm to OrderedTerm (#4434)
- 10:12 AM Revision adac5022 (cdmlib): - converted dnaQuality from DefinedTerm to OrderedTerm (#4434)
- 09:37 AM Revision 5702e33d (taxeditor): - adapted to cdmlib changes (#4434)
11/21/2014
- 05:45 PM feature request #4499: Implement fields for typical StatisticalMeasurementValues
- One problem that arises is the correct use of numbers in Java, Hibernate + DB. For correct rounding etc. we should be...
- 02:42 PM feature request #4499 (New): Implement fields for typical StatisticalMeasurementValues
- To simplify the handling of quantitative data we may want to add concrete fields for min, max, average, sampleSize, t...
- 03:36 PM Revision fa927d2c (cdmlib): whitespace
- 03:36 PM Revision 22687d2b (cdmlib): ignoring VAADIN compilation artefacts
- 03:36 PM Revision 5bdac292 (cdmlib): adding documentation URL to commentn
- 03:36 PM Revision 0e847a56 (cdmlib): adding missing log4j.properties to artifact (fixes excessive loggin on DEBUG level)
- 02:21 PM Revision 502ea305 (cdmlib): Add institution to DerivationEvent and Amplification
- 01:55 PM Revision 0e660e76 (cdmlib): add DnaMarker to Primer #4470
- 10:38 AM Revision bbe6519f (cdmlib): fix bug, add OrederedTerm to hibernate cfg
- 10:24 AM Revision 0386b59c (cdmlib)
- 10:16 AM Revision 710c18d5 (cdmlib): add DNA Quality Type vocabulary
11/20/2014
- 05:53 PM Revision a8591c9c (taxeditor): First version of PherogramView added.
- 04:42 PM Revision 3ae67486 (taxeditor): ToggleInsertOverwriteButton and ToggleLeftRightInsertionButton (currently only forward) linked to according functionality in LibrAlign.
- 04:20 PM Revision 88572bd4 (cdmlib): added test for saveOrUpdate within conversation sessions
- 04:19 PM feature request #4490: Make the label of the taxon page tabs customizable for portal admins
- Have we agreed on "Specimens & Observations"? Labeles should be short ! We also discussed "Occurrences". As we have m...
- 01:00 PM feature request #4490: Make the label of the taxon page tabs customizable for portal admins
- This should be solved in a general way, therefore I am changing the ticket title.
Its already implementd in the the... - 12:05 PM feature request #4490 (Closed): Make the label of the taxon page tabs customizable for portal admins
- For the specimen tab:
"I think that "Specimens" might be a good default and only if you also handle observations... - 02:53 PM Revision e8cc5fb9 (taxeditor): - added preference for showing Collecting Areas below Country in DetailsView (#4473)
- 11:54 AM feature request #4488: Specimen data points in map should show FieldUnit information
- Could the first solution be implemented by the map service itself?
- 11:53 AM feature request #4488 (Closed): Specimen data points in map should show FieldUnit information
- Possible solutions:
* show a tooltip when hovering over the point
* ~~click on point selects the item in the ta... - 11:44 AM feature request #4484 (New): Evaluate publish flag for derivates in data portal
- Evaluate publish flag for derivates in data portal
- 11:21 AM Revision 42654134 (cdm-dataportal): - renamed table column
- 11:15 AM Revision b3271304 (taxeditor): - made use of TermType DnaQuality
- 10:42 AM Revision f22ca8aa (taxeditor): - added static method to DerivateLabelProvider to get the derivate text
- - refactored moving of derivates to use the operation framework.
- immplemented undo/redo - 10:41 AM Revision eb65444b (taxeditor): - DerivateView and BulkEditor trigger selection change event for MediaViewPart (fixes #4475)
- 10:36 AM Revision 20ced855 (taxeditor): - DerivedUnits DetailsView only shows FieldUnit data in titleCache (fixes #4474)
- - Areas section is now shown below country for FieldUnits (fixes 4473)
- 10:34 AM Revision 123de414 (taxeditor): - Rights section is now part of MediaSpecimen DetailsView (fixes #4472)
- - DerivedUnits DetailsView only shows FieldUnit data in titleCache (fixes #4474)
11/19/2014
- 05:44 PM Revision b2bc9ad8 (cdmlib): Branch for model 3.4.1
- 05:44 PM Revision d979d3a0 (cdmlib): Add DnaQuality.csv (not fully ready)
- 05:31 PM Revision 897f03dd (cdmlib): fixing component scan in jars
- 03:09 PM Revision 413a42dd (cdm-dataportal): adapting test to fix comitted in r22085
- 02:46 PM Revision 62bc913b (taxeditor): changed icons for checklist editor
- 01:06 PM Revision 561eeefe (taxeditor): removed MediaView from perspective
11/18/2014
- 05:53 PM bug #4465: Handle Drag and Drop for Synonyms
- Hallo,
ich wollte ein Synonym per Drag&Drop von einem Taxon zu einem anderen schieben und dann speichern. Habe es m... - 05:53 PM bug #4465 (Worksforme): Handle Drag and Drop for Synonyms
- Currently if you drag & drop a synonym from 1 Editor to another it works but data can not be saved as we are in a dif...
- 03:59 PM Revision ee80eadc (taxeditor): Update on ChecklistPerspective, added ConcepView
- 03:22 PM Revision 4483d1dd (taxeditor): added checklist perspective to taxonomic editor
- 02:47 PM Revision 68224814 (taxeditor): - extended DerivateSearchView to allow multiple selection
- - added context menu to open multiple elements in DerivateView
- extended DerivateView to show multiple derivate hie... - 02:44 PM Revision 1cc6bcd1 (cdmlib): - when moving derivate also set "derivedFrom" to the new DerivationEvent
- 02:04 PM Revision 896d9872 (taxeditor): branding the branch
- 01:34 PM Revision 97d06fef (taxeditor): creating branch for rl project
- 12:59 PM Revision affad970 (cdm-dataportal): deleting discontinued module, see http://dev.e-taxonomy.eu/svn/tags/drupal/dwca_export for last state
- 10:28 AM Revision c3f81c22 (taxeditor): remotingApplicationContext : now using the cachers from cdmlib
- CdmServiceCacher : added unimplemented method
- 09:52 AM Revision 03aae089 (cdmlib): ICdmCacher, DefaultTermInitializer : added comments
- CdmCacher : added code to disallow null values in cache and moved term initialisation code to specific subclass
CdmDa...
11/17/2014
- 06:31 PM Revision efe169cc (cdmlib): cleanup javadoc
- 05:50 PM Revision 66bd03c6 (cdmlib): update JaxbImportActivator
- 05:47 PM Revision 0b1a89f0 (cdmlib-apps): update JaxbImportActivator
- 05:46 PM Revision 003ff122 (cdmlib-apps): update JaxbImportActivator
- 04:12 PM Revision 777fb340 (cdmlib-apps): minor
- 04:12 PM Revision f4c01f8e (cdmlib-apps): minor
- 04:03 PM Revision bb3188cb (cdm-dataportal): feature block setting 'Link to name used in source' now working in all cases
- 02:10 PM Revision a3a91fc4 (cdm-dataportal): restoring erroneously deleted dwca_export.module
- 02:07 PM Revision 642b323b (cdm-dataportal): implementing ui for feature block settings, solves #4464 (Admin section for feature block setting implemented)
- 01:39 PM Revision b8250996 (taxeditor): #4463 fixed
- if a titlecache is updated and the position of the parsing problem is behind the actual text no position is created.
- 10:54 AM Revision e139a136 (taxeditor): - exported eu.etaxonomy.cdm.io.csv.redlist.demo package to fix compile errors
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