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From 11/12/2014 to 12/11/2014

12/11/2014

09:35 PM Revision b463980c (cdmlib): - added isDeleteMolecularData flag to configurator
Patrick Plitzner
09:35 PM Revision c05bb77e (taxeditor): - use labelCache instead of description for amplification labeling
Patrick Plitzner
09:35 PM Revision b9db5d67 (cdmlib): - use labelCache instead of description for amplification labeling
Patrick Plitzner
09:34 PM Revision 3d611097 (cdmlib): - change visibility of createTestDataSet to public
Patrick Plitzner
09:33 PM Revision 74407428 (taxeditor): - fixed possible null label
Patrick Plitzner
09:32 PM Revision 68ee041d (cdmlib): - change visibility of createTestDataSet to public
Patrick Plitzner
05:01 PM Revision 31cadd5d (cdmlib-apps): add new test server DNS
Andreas Müller
05:01 PM Revision 52002c73 (taxeditor): merge from trunk
Cherian Mathew
04:29 PM Revision c6423b90 (cdmlib): test for Amplification labelCache
Andreas Müller
04:19 PM Revision 4dad1581 (taxeditor): - update label cache
Patrick Plitzner
04:12 PM Revision b4c6fd16 (utis-webapp): separate logging config for tests
Andreas Kohlbecker
04:11 PM Revision 94d718f7 (utis-webapp): better loggind and adding WORMS as further provider
Andreas Kohlbecker
04:07 PM Revision 1b2e403a (cdmlib): - organized imports
Patrick Plitzner
04:02 PM Revision 73518da2 (cdmlib): implement Amplification.labelCache generation
Andreas Müller
03:57 PM Revision feb81cbe (taxeditor): - adapted details views and wizards to cdm changes (amplifaction + amplification result)
- added missing parameters to details views Patrick Plitzner
03:51 PM Revision 747a744e (cdmlib): - added cascade saving for amplification result
- made constructor protected to avoid JavaAssistEnhancementException Patrick Plitzner
03:39 PM Revision 04a7786b (utis-webapp): adding support for fitering subproviders
Andreas Kohlbecker
03:38 PM Revision f1d047a2 (utis-webapp): experimetal use of ClassificationMixIn in SpringMVCConfig - not working
Andreas Kohlbecker
03:37 PM Revision 9dbf3936 (utis-webapp): adding experimental jackson mixing for type classificatoin
Andreas Kohlbecker
03:36 PM Revision 28390832 (utis-webapp): readme in markdown
Andreas Kohlbecker
03:35 PM Revision 098b255c (utis-webapp): updating to lastes drf-workflow version; configuring mvn eclipse plugin
Andreas Kohlbecker
03:30 PM Revision ab739787 (cdmlib): doc
Andreas Müller
03:29 PM Revision 2ab8cfdd (cdmlib): handle duplicates in identifier list
Andreas Müller
03:20 PM Revision dadca05a (utis-core): model changes: adding accordingTo to taxon, classification as global type; removing useless use flag from ServiceProviderInfo; renaming url to documentationUrl in TaxoRESTClients
Andreas Kohlbecker
02:42 PM Revision 5d5e8580 (cdmlib-apps): adapt app-import to model 3.4.1
Andreas Müller
02:37 PM Revision 07199bfc (cdmlib-apps): adapt pesi to model 3.4.1
Andreas Müller
02:28 PM Revision f89e8676 (cdmlib-apps): adapt eFlora to model 3.4.1
Andreas Müller
02:23 PM Revision 6b19b1df (cdmlib-apps): add yourkit repository to app-import
Andreas Müller
02:20 PM Revision f0fb217a (cdmlib-apps): add yourkit repository to pesi & eFlora
Andreas Müller
02:10 PM Revision 4b32abac (cdmlib-apps): add maven-build-plugin infos to poms in cdmlib-app
Andreas Müller
02:04 PM Revision 0a79de20 (cdmlib-apps): add mvne compiler plugin info to eFlora
Andreas Müller
01:58 PM Revision 00c85a20 (cdmlib-apps): add java code level 1.7 to pesi, app-import and xper-integration
Andreas Müller
01:55 PM Revision c70596a5 (taxeditor): ##3890
Katja Luther
01:50 PM Revision 8d612ea9 (cdmlib-apps): add java code level to eflora pom
Andreas Müller
01:44 PM Revision f4ba7f73 (cdmlib): minor
Andreas Müller
01:39 PM Revision f2f592e3 (cdmlib): updated webapp h2 test database
Andreas Müller
01:33 PM Revision 881a1d56 (cdm-vaadin): moved it to backup
Alexander Oppermann
01:06 PM Revision feb7a534 (taxeditor): - temporarily commented compile errors
Patrick Plitzner
01:03 PM Revision da005e87 (taxeditor): - adapted to 3.4.0 cdm changes
Patrick Plitzner
12:11 AM Revision 48055d22 (cdmlib): minor
Andreas Müller
12:07 AM Revision acdad405 (cdmlib): solve identifier conflict
Andreas Müller
12:02 AM Revision bd36adbf (cdmlib): merge 3.4.1 into trunk
Andreas Müller

12/10/2014

11:23 PM Revision c2c7b79b (cdmlib): Bidirectional identifier handling
Andreas Müller
11:22 PM Revision b1e7575d (cdmlib): latest changes to AmplificationResult and DnaQuality
Andreas Müller
10:40 PM Revision af44092f (cdmlib): updating DnaQuality with typedPurificationMethod to allow both #4434 , #4552
Andreas Müller
09:46 PM Revision 59048086 (cdmlib): conflict fiexes after merging trunk
Andreas Müller
06:03 PM Revision 46d0131b (taxeditor): moving tests from cdmlib to the test project
Cherian Mathew
06:02 PM Revision 3bf5ac6d (taxeditor): temporarily resolving conflict with trunk
Cherian Mathew
06:01 PM Revision dccac9cf (taxeditor): added session manager calls to the polytomous key views
Cherian Mathew
06:01 PM Revision 80de230c (taxeditor): updated manifest for deleted test dir
removed unnecessary commit root entity methods in session and session manager Cherian Mathew
05:59 PM Revision 5da981b0 (taxeditor): moving tests to the eu.etaxonomy.taxeditor.test project
Cherian Mathew
04:32 PM Revision 93fa4cda (taxeditor): - removed unused menu item
Patrick Plitzner
04:28 PM Revision 7cad7934 (cdmlib): merge-update from trunk
Patrick Plitzner
04:27 PM Revision c7322065 (cdmlib): -fixed possible NPE (fixes #4532)
Patrick Plitzner
04:25 PM Revision c9d7b4eb (cdmlib): merge-update from trunk
Patrick Plitzner
03:47 PM Revision efacf7a5 (cdmlib): update scripts for splitting Amplification and adding labelCache and reversecomplement
Andreas Müller
03:27 PM Revision d06ba760 (cdmlib): - added abstract method createTestData() to CdmIntegrationalTest
- method should be used for generatin test XML data sets
- making it abstract and enforcing implementation in sub c...
Patrick Plitzner
03:24 PM Revision 92755d03 (utis-core): renaming AcceptedName to Taxon and Synonym class no longer nested in TnrResponse
Andreas Kohlbecker
03:11 PM Revision 38ca58a2 (utis-core): merging properties of class Name into TaxonName
Andreas Kohlbecker
02:18 PM Revision d90a6c9f (taxeditor): - added publish flag to DetailsView for SpecimenOrObservationBases (fixes #3951)
Patrick Plitzner
01:57 PM Revision 2f808d99 (utis-core): schema refactoring: renaming properties
Andreas Kohlbecker
01:22 PM Revision f020ab79 (taxeditor): fixed #4523
Alexander Oppermann
01:10 PM Revision 040d6554 (taxeditor): - added possibility to also add a person as nomenclatural author (fixes #4301)
Patrick Plitzner
12:56 PM Revision 8da7dbc3 (utis-core): renaming taxonStatus to taxonomicStatus
Andreas Kohlbecker
12:55 PM bug #4545 (Closed): Implement TeamOrPersonBaseSelectionDialog
This is basically what the AgentSelectionDialog currently does but the search results are not filtered for only TeamO... Patrick Plitzner
12:42 PM Revision 2200da88 (taxeditor): - fixed class cast to more generic type
Patrick Plitzner
12:13 PM Revision 3de91ced (taxeditor): Fix for ticket #4519
CdmDataSourceRepository : added a new method to create default h2 data source
eu.etaxonomy.taxeditor.cdmlib : updated...
Cherian Mathew
11:59 AM bug #4544 (New): EntitySelectionElement for AgentBase.class should also return Institutions
Currently, it only returns Teams or Persons.
Be sure to check all the places where it is currently used and deci...
Patrick Plitzner
11:49 AM Revision e54c04b0 (cdmlib): - fixed testLoadData()
- the field unit element in the XML needed to have the derivedFrom parameter Patrick Plitzner
10:36 AM Revision 7ba2b0d5 (cdmlib): - added isPublish() method to facade
Patrick Plitzner
10:28 AM Revision 02121ef2 (taxeditor): - create an empty media for MediaSpecimen (fixes #4543)
- fixed possible NPE Patrick Plitzner
10:09 AM Revision d969af0f (taxeditor): - refactored access to static method
Patrick Plitzner
10:08 AM Revision a31abd30 (taxeditor): - added constant Window.OK
Patrick Plitzner
10:01 AM Revision bf9d1425 (taxeditor): - reverted comment
Patrick Plitzner

12/09/2014

11:29 PM Revision a2c31205 (cdmlib): JAXB annotations for amplification results
Andreas Müller
10:56 PM Revision af1cc31c (cdmlib): preliminary set OccurrenceServie.loadData test to ignore, as data is not loading correctly
Andreas Müller
10:55 PM Revision 1686096f (cdmlib): preliminary set OccurrenceServie.loadData test to ignore, as data is not loading correctly
Andreas Müller
10:26 PM Revision 4c96041a (cdmlib): latest changes for AmplificationResult
Andreas Müller
06:21 PM Revision 25864e07 (taxeditor): merge from trunk
Cherian Mathew
06:18 PM Revision 2e4de8d1 (taxeditor): last fix for revision number of classpath
Alexander Oppermann
06:05 PM Revision d59e5382 (taxeditor): merge from trunk
Cherian Mathew
06:05 PM Revision 9fed8b2f (taxeditor): deleting remoting project and merge from trunk
Cherian Mathew
06:04 PM Revision 7725f420 (taxeditor): too many fixes on classpath for today
Alexander Oppermann
06:01 PM Revision e8aa1aab (taxeditor): added session binding committing to polytomous key editor
Cherian Mathew
05:58 PM Revision 9af2fbbd (taxeditor): fixed classpath
Alexander Oppermann
05:56 PM Revision c8cd88d1 (taxeditor): forgot the test files in the last commit
Cherian Mathew
05:55 PM Revision 58afb673 (taxeditor): moving all source files from the remoting project to the cdmlib project
Cherian Mathew
05:52 PM Revision f81f1e92 (taxeditor): changed .classpath to be compliant with trunk
Alexander Oppermann
05:34 PM Revision bdfdcda2 (cdmlib): add labelCache to Amplification #4542
Andreas Müller
05:33 PM Revision a491689c (cdmlib): some bugfixes to new Amplification modelling #4541
Andreas Müller
05:33 PM Revision bee14682 (taxeditor): Added changes from redlist taxonomic editor branch
* fixes Language bug for menue
* added Perspective for checklist
* fixes reload issues on checklist editor
Alexander Oppermann
05:33 PM Revision c53a25ad (taxeditor): updated packages for remoting source
Cherian Mathew
05:28 PM Revision 7baf9c1b (taxeditor): changes to be compliant with trunk for reintegration
Alexander Oppermann
05:21 PM Revision 13c5d3f0 (taxeditor): merged trunk into branch
Alexander Oppermann
05:09 PM Revision fcab75e4 (cdmlib): some adaptations after trunk merge to 3.4.1
Andreas Müller
05:03 PM Revision af283637 (cdmlib): merge-update from trunk
Patrick Plitzner
04:52 PM Revision a5e9f7de (taxeditor): - added special case handling for DerivateEditor so that the DetailsView only show data of the DerivedUnit and the FieldUnit #4474
Patrick Plitzner
04:46 PM Revision 5277a2a3 (taxeditor): - fixed possible ClassCastException (#4533)
Patrick Plitzner
04:46 PM Revision 2d717c7c (cdmlib): dna Quality purification method
Andreas Müller
04:45 PM Revision 45389cbe (cdmlib): label for PAT voc
Andreas Müller
04:44 PM Revision 395ccc97 (cdmlib): separate Amplification and AmplificationResult.java #4541
Andreas Müller
04:34 PM Revision dfe6e46f (taxeditor): - added reference to ticket in comments
- keep on displaying view contents when selecting the view itself Patrick Plitzner
04:33 PM Revision bcad19b9 (taxeditor): MessagingUtils : added new method for a warning dialog when not connected to a datasource
CdmStore : changed warning dialog to new method mentioned above
LanguagePreferencePage, PreferencesUtil, AbstractMenu...
Cherian Mathew
03:29 PM Revision aeeab9d0 (taxeditor): removed throwing of runtime exception since we already have a warning (#4365)
Cherian Mathew
03:08 PM feature request #4538 (New): Enable creation of taxon without classification
It should be possible via File - New - Taxon.
Currently it is only possible via taxon bulk editor which uses a s...
Patrick Plitzner
02:37 PM Revision 897412ca (taxeditor): fixed ticket #3763
Alexander Oppermann
01:07 PM Revision 2f9a2a42 (utis-core): temporary switch to test server
Andreas Kohlbecker
01:04 PM Revision b572c24e (taxeditor): fixed ticket #1639
Alexander Oppermann

12/08/2014

06:28 PM Revision 9797b698 (taxeditor): clean up
Cherian Mathew
04:55 PM Revision c9a796bb (cdm-vaadin): Added spring related repository to pom.xml, in order to let this poject build via maven
Alexander Oppermann
04:43 PM Revision 3fd7eb7e (taxeditor): moving code to remoting project
Cherian Mathew
04:27 PM Revision 73c607ab (cdm-dataportal): updating to selenium driver 2.44.0
Andreas Kohlbecker
03:49 PM Revision c0d06a55 (cdm-dataportal): adding missing plugin version numbers
Andreas Kohlbecker
03:39 PM Revision f5827f84 (cdm-dataportal): setting code compliance to 1.7
Andreas Kohlbecker
03:00 PM Revision a4b2bf75 (utis-webapp): updating terms of service
Andreas Kohlbecker
01:49 PM Revision 3b57adbc (taxeditor)
Katja Luther
01:29 PM Revision e6ea6083 (taxeditor)
Katja Luther
01:27 PM Revision 8c84bc10 (cdmlib): bug fix
Andreas Kohlbecker
01:27 PM Revision 9de237d7 (cdmlib): CdmUpdater can run on multiple databases supplied as comma separated list
Andreas Kohlbecker
01:24 PM Revision 7add6872 (taxeditor): Fixed Bug #4531
Alexander Oppermann
01:11 PM Revision 695fb39f (taxeditor)
Katja Luther
10:21 AM Revision 8b5f52b5 (taxeditor): cleaning up
Cherian Mathew
10:20 AM Revision dc80da32 (taxeditor): cleaning up
Cherian Mathew
10:09 AM Revision f55638a3 (taxeditor)
Katja Luther

12/05/2014

05:13 PM Revision 4561dd9c (taxeditor): Added a reload function so that the checklist editor doesn't need to be relaunched after adding terms.
Alexander Oppermann
09:44 AM Revision deebf33e (taxeditor): Menu update in AlignmentEditor moved to according listener.
Copyright information added. Ben Stöver

12/04/2014

08:19 PM Revision c7c01528 (taxeditor): Removed unused imports.
Ben Stöver
08:18 PM Revision 70eb3fee (taxeditor): Buttons for toggling "insert/overwrite" and "insert left/right" in toolbar replaced by commands that can be updated by the AlignmentEditor.
Ben Stöver
05:53 PM Revision 572950b2 (taxeditor): - reverted to previous version due to compilation error
Patrick Plitzner
04:00 PM Revision 69c08a27 (taxeditor): - added service method to get descriptions which have a specimen set as describedSpecimen
- added test which fails because the XML is loaded incorrectly Patrick Plitzner
04:00 PM Revision 404c0036 (cdmlib): - added service method to get descriptions which have a specimen set as describedSpecimen
- added test which fails because the XML is loaded incorrectly Patrick Plitzner
03:30 PM Revision 8191b00a (taxeditor): - added delete result as warn message
Patrick Plitzner
03:29 PM Revision c1d8fdfa (cdmlib): - re-added hibernate annotation
Patrick Plitzner
02:17 PM bug #2578: Improve "move synonym"
the implementation should be correct now and can be used by drag&drop (r22279 und r22252)
Katja Luther
02:15 PM Revision 1b8e2548 (taxeditor): fix drag&drop for synonyms to another accepted taxon
Katja Luther
01:55 PM Revision 8cd3690c (cdmlib): -removed hibernate search annotation (copy&paste error)
Patrick Plitzner
12:25 PM Revision 8935dbaa (taxeditor): MultipleAlignmentsContainer now used in AlignmentEditor.
Test consensus sequence and consensus sequence data area added. Ben Stöver
10:38 AM Revision 3cf116be (cdmlib-apps): remove InnoDB from BgbmInstancesUpdater
Andreas Müller
10:37 AM Revision c908f849 (cdmlib-apps): minor
Andreas Müller
10:36 AM Revision d42926ce (cdmlib): minor
Andreas Müller
10:35 AM Revision 7a7e883f (cdmlib): use saveOrUpdate in JaxbImport
Andreas Müller
10:27 AM Revision 3e2e342d (taxeditor): - fixed ClassCastException
Patrick Plitzner
10:02 AM Revision abc0d35a (taxeditor): - adapted to method signature change in cdmlib
Patrick Plitzner
09:52 AM Revision 944cfe7b (cdmlib): - invoke super method in isDeletable()
Patrick Plitzner
09:44 AM Revision 96274f18 (cdmlib): - changed service method to retrieve the directly related objects
- adapted tests Patrick Plitzner
09:43 AM Revision b141d6fb (cdmlib): - fixed bidriectionality for DnaSample<->Amplification
Patrick Plitzner

12/03/2014

11:55 PM Revision 9f976540 (cdmlib): fixing test for SingleReadAlignment and removal of SpecAndObs_Sequence
Andreas Müller
10:13 PM Revision 6571e4e5 (cdmlib): implement SingleReadAlignment.java #4529
not yet ready Andreas Müller
10:12 PM Revision e850e1c8 (cdmlib): minor changes
Andreas Müller
10:09 PM Revision ee8303fa (cdmlib): remove Specimen_Sequence table from ddl
Andreas Müller
10:08 PM Revision 7d84de65 (cdmlib): add nextUpdater to 331_34 updater
Andreas Müller
05:07 PM Revision 73cac0e8 (cdmlib): - commented unused field from SpecimenDeleteConfigurator
- added TODOs for deletion checking for specimens
- added emtpy isDeletable() method
Patrick Plitzner
05:06 PM Revision fe61f73d (taxeditor): merge from trunk
Cherian Mathew
05:05 PM Revision a7f43cf4 (cdmlib): - commented unused fields of DeleteResult
Patrick Plitzner
05:05 PM Revision 97e175e5 (taxeditor): updated tests and added checks to cacher
Cherian Mathew
04:39 PM Revision af727c93 (taxeditor): - deleted usage of commented method in cdmlib
Patrick Plitzner
04:24 PM Revision dea7cd9c (taxeditor): - added command, handler, double click listener to open taxa from associated taxa section in details view
- caught runtime exception for orphaned taxa Patrick Plitzner
04:04 PM Revision 22ef1770 (cdm-vaadin): updated cdm-vaadin launch file to include test classes and jetty.xml file
Cherian Mathew
03:49 PM Revision e84b1ba9 (cdm-vaadin): added jetty launch file for cdm-vaadin
svn:ignored widgetsets dir in src/main/webapp/VAADIN Cherian Mathew
02:16 PM Revision ead0a1ab (cdm-vaadin): initial commit for project cdm-vaadin
Cherian Mathew
02:00 PM Revision a53be09c (taxeditor): adapt transientServices to returntype of isdeletable methods
Katja Luther
01:49 PM Revision 5ddc7eb3 (cdmlib): isDeletable returns DeleteResult
Katja Luther
01:35 PM Revision 70d41663 (cdm-vaadin): creating a sub repo for the cdm-vaadin wen frontend
Andreas Kohlbecker
01:31 PM Revision 93613cac (cdmlib): - implemented bidirectionality for derivation events
Patrick Plitzner
01:29 PM Revision 01a5514b (cdmlib): some fixes after trunk integration to 341branch
Andreas Müller
01:27 PM Revision e13ba183 (taxeditor): - renamed interface IDerivedUnitFacadeEditor to IDerivedUnitFacadePart
- show field unit data in NewDerivedUnitBaseWizard Patrick Plitzner
01:22 PM Revision ec352541 (cdmlib): merge-update from trunk
Patrick Plitzner
10:22 AM feature request #4499: Implement fields for typical StatisticalMeasurementValues
first implementations but commented r22246
Andreas Müller
10:21 AM Revision 61b380b5 (cdmlib): add first version of BigDecimal (still unclear if we want to keep the UserType) #4499
Andreas Müller
10:06 AM Revision 64addc2b (cdmlib): minor
Andreas Müller
10:03 AM Revision ccf1f2f1 (cdmlib): merge PresenceTerm and AbsenceTerm #4521
Andreas Müller
09:47 AM Revision e3bcee2d (taxeditor): - added interface IDerivedUnitFacadeEditor to tag editors that are working with DerivedUnitFacades (e.g. BulkEditor)
- show field unit data for DerivedUnit when selected in BulkEditor Patrick Plitzner
09:36 AM Revision a84f8263 (cdmlib): - added isDeleteFromIndividualsAssociation and isDeleteFromTypeDesignation to SpecimenDeleteConfigurator
- implemented deletion for above mentioned flags
- added more information to delete result when deleting specimens
...
Patrick Plitzner
09:24 AM Revision ee369c1a (cdmlib): - extended toString() method
Patrick Plitzner

12/02/2014

12:51 PM Revision efa09cd1 (taxeditor): Output style of PherogramViewPart changed. (Will user defined in future versions.)
Ben Stöver
12:43 PM Revision e5a1b835 (cdmlib): remove TODO
Andreas Müller
12:32 PM Revision 5d7dcbd7 (taxeditor): Missing properties added to CDMAlignmentObjectPlaceholder.
Ben Stöver
11:17 AM Revision 0e88fd5d (cdmlib): - added loadStrategy=CleanSweepInsertLoadStrategy.class to tests to fix test failure
Patrick Plitzner
10:32 AM Revision ea5eb5e1 (taxeditor): - removed unused imports
Patrick Plitzner
10:24 AM Revision e97b77c6 (taxeditor): - added preference for displaying associated taxa in specimen details view
Patrick Plitzner
10:01 AM Revision 3fc39e76 (taxeditor): - added section for associated taxa (IndividualsAssocation, TypeDesignation) to DetailsView for specimen
Patrick Plitzner
09:58 AM Revision 056e4137 (taxeditor): - added amplification description to single read label in hierarchy
- added marker to update method of amplification description Patrick Plitzner
09:56 AM Revision 77778ce2 (taxeditor): - refactored/cleaned up commands extension point
Patrick Plitzner
09:55 AM Revision b82a6bfc (cdmlib): - added DISTINCT to HQL query for associated taxa
- created and used XML data source in occurrence service test Patrick Plitzner

12/01/2014

02:48 PM Revision d1fcc861 (cdmlib): - added xml resources for tests
Patrick Plitzner
02:47 PM Revision b71032bb (cdmlib): - fixed bidirectional mapping
Patrick Plitzner
12:35 PM Revision bfe54fd9 (taxeditor): fix the problem of referencingObjectsView and deletion in bulk editor
Katja Luther
11:30 AM Revision b0ab81b7 (taxeditor): - added missing service method to transient service
Patrick Plitzner
10:43 AM Revision 9f7e89bc (taxeditor): - refactored LanguageStringWithLabelElement (isMultiLine flag)
Patrick Plitzner
10:26 AM Revision e03ab30b (taxeditor): - added notes (annotations) to SingleRead details view
Patrick Plitzner
10:26 AM Revision 2a511019 (taxeditor): - layout enhancement
Patrick Plitzner
10:25 AM Revision 365a2c1e (taxeditor): - added barcode to MediaSpecimen label
Patrick Plitzner
10:24 AM Revision 06d8cd12 (cdmlib): - added occurrence service methods to retrieve all taxa that are associated with a specimen:
- via IndividualsAssociation
- via TypeDesignation
- added test
Patrick Plitzner

11/27/2014

02:15 PM Revision 1470efb0 (cdmlib): removing old obsolte code
Andreas Kohlbecker
01:52 PM Revision 34902b3c (cdmlib): remove FIMXE on protected constructor
Andreas Müller
01:50 PM Revision fbf1cec6 (cdmlib): minor
Andreas Müller

11/26/2014

07:38 PM Revision bb2602e9 (taxeditor): TODO comment added to AlignmentEditor.
Ben Stöver
06:32 PM Revision 2d68aebe (taxeditor): PherogramView renamed to PherogramViewPart to avoid name conflict with LibrAlign component.
Adjustments to recent changes in LibrAlign on pherogram view components. Ben Stöver
04:07 PM Revision 11950686 (taxeditor): - fixed possible NPE when opening DerivateView for a taxon when no derivates exist
Patrick Plitzner
03:37 PM Revision 26abde2f (taxeditor): merge-update from trunk
Patrick Plitzner
03:31 PM Revision fdb9cd4c (cdmlib): - added TODO comment
Patrick Plitzner
03:24 PM Revision 4de6126f (taxeditor): Checklist Editor retreives now all PresenceAbsenceTerms by filtering via TermType.PresenceAbsence instead of PresenceAbsenceTerm.class
Alexander Oppermann
03:20 PM Revision 3177a949 (taxeditor): - activated filter in factual data view for displaying only IndividualsAssociations
Patrick Plitzner
03:04 PM Revision 724c80be (cdmlib): creationi fo PresenceAbsence Terms
Andreas Müller
02:52 PM Revision 0c41af54 (taxeditor): - removed obsolete Primer page for AmplificationWizard
- added dnaMarker to amplification designation Patrick Plitzner
02:30 PM Revision 589ecf52 (cdmlib): make all defined terms comparable
Andreas Müller
02:25 PM Revision 22084928 (cdmlib-apps): minor
Andreas Müller
02:23 PM Revision 433297e7 (cdmlib-apps): some new JAXB io infos
Andreas Müller
01:50 PM Revision f7acd856 (taxeditor): - re-enabled MediaViewPart for DerivateView (#4475)
Patrick Plitzner
01:21 PM Revision 46be9511 (taxeditor): - added missing service method to transient service
Patrick Plitzner
01:19 PM Revision 71f9f770 (taxeditor): - moved extension point for taxon navigator context menu
- fixed DerivateSearchView layout
- added "disabled" extension point for toggling individual assciations in factual ...
Patrick Plitzner
01:00 PM Revision 22878c8a (cdm-dataportal): moving unused images into separate folder
Andreas Kohlbecker
01:00 PM Revision ca7fa7da (cdm-dataportal): fixing #4512 (Corvidae: protologes with mediatype other than image are missing) and using font-awsome icon fa-book for protologues
Andreas Kohlbecker
12:47 PM Revision 73e694a1 (cdmlib): - removed BlankDataSet form test
Patrick Plitzner
12:45 PM Revision 090dd9ba (taxeditor): - set multiline flag for LanguageStringWithLabelElement #2248
Patrick Plitzner
12:06 PM Revision 7e9949c5 (cdmlib): - removed unused code
Patrick Plitzner
12:06 PM Revision a6e9cd03 (cdmlib): - implemented service method (and test for it) to get all taxa associated with a single specimen
Patrick Plitzner
10:35 AM Revision a8c659ac (cdm-dataportal): fixing #4514 (Corvidae: dynabox not working in somce cases)
Andreas Kohlbecker
10:29 AM Revision ccc9031c (cdm-dataportal): fixing #4516 (Reference footnotes not shown in text-features)
Andreas Kohlbecker
09:54 AM Revision 396701ca (taxeditor): - added clear button to DerivateSearchView
- made use of cdmlib service to get associated specimen for one taxon (#4506) Patrick Plitzner
09:53 AM Revision aebfd8da (cdmlib): - added listAssociatedTaxa() method to occurrence service (non functional)
Patrick Plitzner

11/25/2014

07:57 PM Revision e4900d3e (taxeditor): Adjustments to recent changes in LibrAlign package structure.
Ben Stöver
07:37 PM Revision c33bb983 (taxeditor): URI property for PherogramView added.
PherogramViews can be opened by double clicking a pherogram in AlignmentEditor.
AlignmentEditor saves URIs for each p...
Ben Stöver
03:23 PM Revision d3825388 (taxeditor): made bug fixes for:
* disabled rank editing support
* empty values are no longer displayed with a "-"
* Checklist Editor is now activated...
Alexander Oppermann
02:06 PM Revision 8f4eb9ce (cdm-dataportal): implementing #4515 (automatically disable fsi viewer on unsupported devices)
Andreas Kohlbecker
02:06 PM Revision ef12d0c6 (cdm-dataportal): typo
Andreas Kohlbecker
01:56 PM Revision fd6cdafb (taxeditor): changed classpath to 3.5.0
Alexander Oppermann
01:33 PM Revision b8548a34 (taxeditor): added checks to makes sure no other exception is thrown within the dialog creation code #4502.
Cherian Mathew
01:13 PM Revision be3a43d5 (taxeditor): changed cdmlib version
Alexander Oppermann
01:09 PM Revision bf4ad8ff (cdmlib): changed version numbers
Alexander Oppermann
01:02 PM Revision e77ecd48 (cdmlib): create branch to make redlist deployment stable
Alexander Oppermann
12:04 PM Revision 92a8bb2a (taxeditor): Adjustments to recent changes in LibrAlign package structure.
Ben Stöver
11:57 AM Revision 919bf084 (taxeditor): language display bug should be fixed
Alexander Oppermann
11:34 AM Revision a8ae8923 (cdm-dataportal): implemented #4504 (suppressed name in source info which have the same name as the current taxon)
Andreas Kohlbecker
11:14 AM Revision 255f5734 (cdm-dataportal): refining descriptions for classification filter
Andreas Kohlbecker
10:08 AM feature request #4511 (Rejected): Remove white space below EntitySelectionElement
Remove white space below EntitySelectionElement
Patrick Plitzner
10:07 AM feature request #4510 (New): Reduce standard height of description text in DetailsView
On smaller screens you have to scroll down to get to the other sections because the empty text field is taking that m... Patrick Plitzner
10:05 AM feature request #4509 (New): Merge Supplemental Data section into DetailsView
It should be configurable via preferences which sections are visible in the DetailsView.
Patrick Plitzner
10:02 AM Revision 01b3ade8 (taxeditor): - added context menu entry to taxon navigator to open associated derivates in DerivateEditor
- added taxon filter to DerivateSearchView (non-functional) (#4506) Patrick Plitzner

11/24/2014

05:32 PM Revision ad5252d9 (cdmlib): removed unwanted service field
Cherian Mathew
05:28 PM Revision 3ce0fa86 (cdmlib): Fix (more of a hack) for conversation holder problem, subclassing the current servlet and setting the conversation so that it is bound every time a service call is made.
Cherian Mathew
04:04 PM Revision 0639ca2a (cdm-dataportal): implementing #4042 (Show URI and DOIs for References)
Andreas Kohlbecker
04:04 PM Revision 38b27a36 (cdm-dataportal): installing font-awesome 4.2.0 and implementing function for consitent use
Andreas Kohlbecker
04:03 PM Revision 57d513cb (cdm-dataportal): sources as bibliography per feature block
Andreas Kohlbecker
04:03 PM Revision ebbdbf60 (cdm-dataportal): fixing bug: taking also the userdefined defaults into account
Andreas Kohlbecker
04:03 PM Revision 8c962983 (cdm-dataportal): feature block settings with defaults
Andreas Kohlbecker
04:03 PM Revision 57e829ae (cdm-dataportal): updating zen theme to version 7.x-5.5
Andreas Kohlbecker
03:23 PM Revision db81978c (taxeditor): latest changes from trunk
Alexander Oppermann
01:50 PM feature request #3580: Write permission error with temporary cdmserver echache dir
Replying to [[comment1|c.mathew]]:
> Changed cache folder in settings to user.home/.cdm-server-echache (r18309). Not...
Andreas Kohlbecker
01:33 PM feature request #3580: Write permission error with temporary cdmserver echache dir
Seems to be fixed. Can we close this ?
Cherian Mathew
01:29 PM feature request #4452: p2 update problem with nebula compositetable dependency
Moving tickets to 3.4.1 milestone
Cherian Mathew
01:29 PM feature request #4246: Allow inserting a new node at the beginning or somewhere else in the Polytomous Key tree
Moving tickets to 3.4.1 milestone
Cherian Mathew
01:29 PM feature request #3746: Implement time period scope for description elements in TaxEditor
Moving tickets to 3.4.1 milestone
Cherian Mathew
01:29 PM task #3603: Remove creation of dummy DefinedTerm when creating new Term related entities
Moving tickets to 3.4.1 milestone
Cherian Mathew
01:29 PM bug #3536: Incorrect last version documentation for Editor
Moving tickets to 3.4.1 milestone
Cherian Mathew
01:29 PM feature request #3337: Correct multiple occurrences of basionym within a homotypic group
Moving tickets to 3.4.1 milestone
Cherian Mathew
01:29 PM bug #2957: running maven site:site for Taxonomic Editor fails
Moving tickets to 3.4.1 milestone
Cherian Mathew
01:29 PM feature request #2380: TaxonNavigator should work with DTO objects instead of full blown cdm instances
Moving tickets to 3.4.1 milestone
Cherian Mathew
11:50 AM Revision e808e65c (cdmlib): setting java source compliance to version 1.7
Andreas Kohlbecker
11:47 AM Revision 10c47677 (taxeditor): - added some more molecular parameters to the DetailsView
Patrick Plitzner
11:16 AM Revision 902350ad (taxeditor): - removed unused code
Patrick Plitzner
10:12 AM Revision add829e5 (taxeditor): - converted dnaQuality from DefinedTerm to OrderedTerm (#4434)
Patrick Plitzner
10:12 AM Revision adac5022 (cdmlib): - converted dnaQuality from DefinedTerm to OrderedTerm (#4434)
Patrick Plitzner
09:37 AM Revision 5702e33d (taxeditor): - adapted to cdmlib changes (#4434)
Patrick Plitzner

11/21/2014

05:45 PM feature request #4499: Implement fields for typical StatisticalMeasurementValues
One problem that arises is the correct use of numbers in Java, Hibernate + DB. For correct rounding etc. we should be... Andreas Müller
02:42 PM feature request #4499 (New): Implement fields for typical StatisticalMeasurementValues
To simplify the handling of quantitative data we may want to add concrete fields for min, max, average, sampleSize, t... Andreas Müller
03:36 PM Revision fa927d2c (cdmlib): whitespace
Andreas Kohlbecker
03:36 PM Revision 22687d2b (cdmlib): ignoring VAADIN compilation artefacts
Andreas Kohlbecker
03:36 PM Revision 5bdac292 (cdmlib): adding documentation URL to commentn
Andreas Kohlbecker
03:36 PM Revision 0e847a56 (cdmlib): adding missing log4j.properties to artifact (fixes excessive loggin on DEBUG level)
Andreas Kohlbecker
02:21 PM Revision 502ea305 (cdmlib): Add institution to DerivationEvent and Amplification
Andreas Müller
01:55 PM Revision 0e660e76 (cdmlib): add DnaMarker to Primer #4470
Andreas Müller
10:38 AM Revision bbe6519f (cdmlib): fix bug, add OrederedTerm to hibernate cfg
Andreas Müller
10:24 AM Revision 0386b59c (cdmlib)
Andreas Müller
10:16 AM Revision 710c18d5 (cdmlib): add DNA Quality Type vocabulary
Andreas Müller

11/20/2014

05:53 PM Revision a8591c9c (taxeditor): First version of PherogramView added.
Ben Stöver
04:42 PM Revision 3ae67486 (taxeditor): ToggleInsertOverwriteButton and ToggleLeftRightInsertionButton (currently only forward) linked to according functionality in LibrAlign.
Ben Stöver
04:20 PM Revision 88572bd4 (cdmlib): added test for saveOrUpdate within conversation sessions
Cherian Mathew
04:19 PM feature request #4490: Make the label of the taxon page tabs customizable for portal admins
Have we agreed on "Specimens & Observations"? Labeles should be short ! We also discussed "Occurrences". As we have m... Andreas Müller
01:00 PM feature request #4490: Make the label of the taxon page tabs customizable for portal admins
This should be solved in a general way, therefore I am changing the ticket title.
Its already implementd in the the...
Andreas Kohlbecker
12:05 PM feature request #4490 (Closed): Make the label of the taxon page tabs customizable for portal admins
For the specimen tab:
"I think that "Specimens" might be a good default and only if you also handle observations...
Patrick Plitzner
02:53 PM Revision e8cc5fb9 (taxeditor): - added preference for showing Collecting Areas below Country in DetailsView (#4473)
Patrick Plitzner
11:54 AM feature request #4488: Specimen data points in map should show FieldUnit information
Could the first solution be implemented by the map service itself?
Patrick Plitzner
11:53 AM feature request #4488 (Closed): Specimen data points in map should show FieldUnit information
Possible solutions:
* show a tooltip when hovering over the point
* ~~click on point selects the item in the ta...
Patrick Plitzner
11:44 AM feature request #4484 (New): Evaluate publish flag for derivates in data portal
Evaluate publish flag for derivates in data portal
Patrick Plitzner
11:21 AM Revision 42654134 (cdm-dataportal): - renamed table column
Patric Plitzner
11:15 AM Revision b3271304 (taxeditor): - made use of TermType DnaQuality
Patrick Plitzner
10:42 AM Revision f22ca8aa (taxeditor): - added static method to DerivateLabelProvider to get the derivate text
- refactored moving of derivates to use the operation framework.
- immplemented undo/redo
Patrick Plitzner
10:41 AM Revision eb65444b (taxeditor): - DerivateView and BulkEditor trigger selection change event for MediaViewPart (fixes #4475)
Patrick Plitzner
10:36 AM Revision 20ced855 (taxeditor): - DerivedUnits DetailsView only shows FieldUnit data in titleCache (fixes #4474)
- Areas section is now shown below country for FieldUnits (fixes 4473) Patrick Plitzner
10:34 AM Revision 123de414 (taxeditor): - Rights section is now part of MediaSpecimen DetailsView (fixes #4472)
- DerivedUnits DetailsView only shows FieldUnit data in titleCache (fixes #4474) Patrick Plitzner

11/19/2014

05:44 PM Revision b2bc9ad8 (cdmlib): Branch for model 3.4.1
Andreas Müller
05:44 PM Revision d979d3a0 (cdmlib): Add DnaQuality.csv (not fully ready)
Andreas Müller
05:31 PM Revision 897f03dd (cdmlib): fixing component scan in jars
Andreas Kohlbecker
03:09 PM Revision 413a42dd (cdm-dataportal): adapting test to fix comitted in r22085
Andreas Kohlbecker
02:46 PM Revision 62bc913b (taxeditor): changed icons for checklist editor
Alexander Oppermann
01:06 PM Revision 561eeefe (taxeditor): removed MediaView from perspective
Alexander Oppermann

11/18/2014

05:53 PM bug #4465: Handle Drag and Drop for Synonyms
Hallo,
ich wollte ein Synonym per Drag&Drop von einem Taxon zu einem anderen schieben und dann speichern. Habe es m...
Andreas Müller
05:53 PM bug #4465 (Worksforme): Handle Drag and Drop for Synonyms
Currently if you drag & drop a synonym from 1 Editor to another it works but data can not be saved as we are in a dif... Andreas Müller
03:59 PM Revision ee80eadc (taxeditor): Update on ChecklistPerspective, added ConcepView
Alexander Oppermann
03:22 PM Revision 4483d1dd (taxeditor): added checklist perspective to taxonomic editor
Alexander Oppermann
02:47 PM Revision 68224814 (taxeditor): - extended DerivateSearchView to allow multiple selection
- added context menu to open multiple elements in DerivateView
- extended DerivateView to show multiple derivate hie...
Patrick Plitzner
02:44 PM Revision 1cc6bcd1 (cdmlib): - when moving derivate also set "derivedFrom" to the new DerivationEvent
Patrick Plitzner
02:04 PM Revision 896d9872 (taxeditor): branding the branch
Alexander Oppermann
01:34 PM Revision 97d06fef (taxeditor): creating branch for rl project
Alexander Oppermann
12:59 PM Revision affad970 (cdm-dataportal): deleting discontinued module, see http://dev.e-taxonomy.eu/svn/tags/drupal/dwca_export for last state
Andreas Kohlbecker
10:28 AM Revision c3f81c22 (taxeditor): remotingApplicationContext : now using the cachers from cdmlib
CdmServiceCacher : added unimplemented method Cherian Mathew
09:52 AM Revision 03aae089 (cdmlib): ICdmCacher, DefaultTermInitializer : added comments
CdmCacher : added code to disallow null values in cache and moved term initialisation code to specific subclass
CdmDa...
Cherian Mathew

11/17/2014

06:31 PM Revision efe169cc (cdmlib): cleanup javadoc
Andreas Müller
05:50 PM Revision 66bd03c6 (cdmlib): update JaxbImportActivator
Andreas Müller
05:47 PM Revision 0b1a89f0 (cdmlib-apps): update JaxbImportActivator
Andreas Müller
05:46 PM Revision 003ff122 (cdmlib-apps): update JaxbImportActivator
Andreas Müller
04:12 PM Revision 777fb340 (cdmlib-apps): minor
Andreas Müller
04:12 PM Revision f4c01f8e (cdmlib-apps): minor
Andreas Müller
04:03 PM Revision bb3188cb (cdm-dataportal): feature block setting 'Link to name used in source' now working in all cases
Andreas Kohlbecker
02:10 PM Revision a3a91fc4 (cdm-dataportal): restoring erroneously deleted dwca_export.module
Andreas Kohlbecker
02:07 PM Revision 642b323b (cdm-dataportal): implementing ui for feature block settings, solves #4464 (Admin section for feature block setting implemented)
Andreas Kohlbecker
01:39 PM Revision b8250996 (taxeditor): #4463 fixed
if a titlecache is updated and the position of the parsing problem is behind the actual text no position is created. Katja Luther
10:54 AM Revision e139a136 (taxeditor): - exported eu.etaxonomy.cdm.io.csv.redlist.demo package to fix compile errors
Patrick Plitzner

11/14/2014

05:31 PM Revision a7dea870 (cdmlib): made changes to be compliant with TaxonomicEditor Export
Alexander Oppermann
05:29 PM Revision 4b75d033 (taxeditor): Added simple CSV Export to Taxonomic Editor
Alexander Oppermann
04:10 PM Revision 08c97e7c (cdmlib): reverting eclipse launcher
Andreas Kohlbecker
03:36 PM Revision 91c32ac7 (utis-webapp): updating to spring 3.2.7.RELEASE and downgrading swagger-springmvc to 9.0.0, also changing the way errors are reportes back to the web client
Andreas Kohlbecker

11/13/2014

04:23 PM Revision a5e4d895 (cdmlib): minor
Andreas Müller
04:22 PM Revision 44ebd614 (cdmlib-apps): minor
Andreas Müller
04:17 PM Revision e15e7ef6 (cdmlib): improve cache update algorithm
Andreas Müller
03:43 PM Revision 3ccfa7de (cdm-dataportal): Deleting discontinued modules 7.x/modules/dwca_export and 7.x/modules/dwca_export_view the development of this module is continued by the NHM
Andreas Kohlbecker
03:12 PM bug #4461 (Closed): Ordering in datasources view fails
Hi,
when I try to order the datasource view by Servers, the result is often incomplete as you can see in the be...
Andreas Müller

11/12/2014

05:30 PM Revision df989a18 (taxeditor): added recursive loading for collection and maps and also correspoding tests.
cleanup of code. Cherian Mathew
03:41 PM Revision c8ea97e3 (cdmlib): - fixed possible NPE
Patrick Plitzner
03:35 PM Revision 686f8a4c (taxeditor): - updated molecular DetailsViews according to requirements
Patrick Plitzner
03:31 PM Revision 1446141f (cdmlib): - fixed typo with semantic meaning
Patrick Plitzner
01:35 PM Revision b55c6380 (utis-webapp): fixing issue #1 - NPE in UtisController.search()
Andreas Kohlbecker
01:34 PM Revision 978db844 (utis-webapp): updating swagger-springmvc to 9.0.1
Andreas Kohlbecker
12:41 PM bug #4458: Advanced Media DetailsView only implemented for ImageFiles
added AK as he is also involved in the integration of other media types into the CDM
Andreas Müller
09:43 AM bug #4458 (New): Advanced Media DetailsView only implemented for ImageFiles
The DetailsView for Media (when in advanced mode) only creates ImageFiles as MediaRepresentationParts. This will lead... Patrick Plitzner
11:28 AM Revision 5117a754 (cdmlib): - used blank data set for test
Patrick Plitzner
11:17 AM Revision 6882da59 (cdm-dataportal): changing default of feature block setting 'as_list' from ul to div
Andreas Kohlbecker
09:51 AM Revision 03d5f058 (taxeditor): - used ImageFile instead of more generic MediaRepresentationPart when creating the Media (fixes #4402)
- fixed a typo Patrick Plitzner
09:51 AM Revision 0a5d335c (cdmlib): - used ImageFile instead of more generic MediaRepresentationPart when creating the Media (fixes #4402)
- fixed a typo Patrick Plitzner
09:27 AM Revision eecb44d0 (taxeditor): merge from trunk
Cherian Mathew
 

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