Activity
From 11/03/2014 to 12/02/2014
12/02/2014
- 12:51 PM Revision efa09cd1 (taxeditor): Output style of PherogramViewPart changed. (Will user defined in future versions.)
- 12:43 PM Revision e5a1b835 (cdmlib): remove TODO
- 12:32 PM Revision 5d7dcbd7 (taxeditor): Missing properties added to CDMAlignmentObjectPlaceholder.
- 11:17 AM Revision 0e88fd5d (cdmlib): - added loadStrategy=CleanSweepInsertLoadStrategy.class to tests to fix test failure
- 10:32 AM Revision ea5eb5e1 (taxeditor): - removed unused imports
- 10:24 AM Revision e97b77c6 (taxeditor): - added preference for displaying associated taxa in specimen details view
- 10:01 AM Revision 3fc39e76 (taxeditor): - added section for associated taxa (IndividualsAssocation, TypeDesignation) to DetailsView for specimen
- 09:58 AM Revision 056e4137 (taxeditor): - added amplification description to single read label in hierarchy
- - added marker to update method of amplification description
- 09:56 AM Revision 77778ce2 (taxeditor): - refactored/cleaned up commands extension point
- 09:55 AM Revision b82a6bfc (cdmlib): - added DISTINCT to HQL query for associated taxa
- - created and used XML data source in occurrence service test
12/01/2014
- 02:48 PM Revision d1fcc861 (cdmlib): - added xml resources for tests
- 02:47 PM Revision b71032bb (cdmlib): - fixed bidirectional mapping
- 12:35 PM Revision bfe54fd9 (taxeditor): fix the problem of referencingObjectsView and deletion in bulk editor
- 11:30 AM Revision b0ab81b7 (taxeditor): - added missing service method to transient service
- 10:43 AM Revision 9f7e89bc (taxeditor): - refactored LanguageStringWithLabelElement (isMultiLine flag)
- 10:26 AM Revision e03ab30b (taxeditor): - added notes (annotations) to SingleRead details view
- 10:26 AM Revision 2a511019 (taxeditor): - layout enhancement
- 10:25 AM Revision 365a2c1e (taxeditor): - added barcode to MediaSpecimen label
- 10:24 AM Revision 06d8cd12 (cdmlib): - added occurrence service methods to retrieve all taxa that are associated with a specimen:
- - via IndividualsAssociation
- via TypeDesignation
- added test
11/27/2014
- 02:15 PM Revision 1470efb0 (cdmlib): removing old obsolte code
- 01:52 PM Revision 34902b3c (cdmlib): remove FIMXE on protected constructor
- 01:50 PM Revision fbf1cec6 (cdmlib): minor
11/26/2014
- 07:38 PM Revision bb2602e9 (taxeditor): TODO comment added to AlignmentEditor.
- 06:32 PM Revision 2d68aebe (taxeditor): PherogramView renamed to PherogramViewPart to avoid name conflict with LibrAlign component.
- Adjustments to recent changes in LibrAlign on pherogram view components.
- 04:07 PM Revision 11950686 (taxeditor): - fixed possible NPE when opening DerivateView for a taxon when no derivates exist
- 03:37 PM Revision 26abde2f (taxeditor): merge-update from trunk
- 03:31 PM Revision fdb9cd4c (cdmlib): - added TODO comment
- 03:24 PM Revision 4de6126f (taxeditor): Checklist Editor retreives now all PresenceAbsenceTerms by filtering via TermType.PresenceAbsence instead of PresenceAbsenceTerm.class
- 03:20 PM Revision 3177a949 (taxeditor): - activated filter in factual data view for displaying only IndividualsAssociations
- 03:04 PM Revision 724c80be (cdmlib): creationi fo PresenceAbsence Terms
- 02:52 PM Revision 0c41af54 (taxeditor): - removed obsolete Primer page for AmplificationWizard
- - added dnaMarker to amplification designation
- 02:30 PM Revision 589ecf52 (cdmlib): make all defined terms comparable
- 02:25 PM Revision 22084928 (cdmlib-apps): minor
- 02:23 PM Revision 433297e7 (cdmlib-apps): some new JAXB io infos
- 01:50 PM Revision f7acd856 (taxeditor): - re-enabled MediaViewPart for DerivateView (#4475)
- 01:21 PM Revision 46be9511 (taxeditor): - added missing service method to transient service
- 01:19 PM Revision 71f9f770 (taxeditor): - moved extension point for taxon navigator context menu
- - fixed DerivateSearchView layout
- added "disabled" extension point for toggling individual assciations in factual ... - 01:00 PM Revision 22878c8a (cdm-dataportal): moving unused images into separate folder
- 01:00 PM Revision ca7fa7da (cdm-dataportal): fixing #4512 (Corvidae: protologes with mediatype other than image are missing) and using font-awsome icon fa-book for protologues
- 12:47 PM Revision 73e694a1 (cdmlib): - removed BlankDataSet form test
- 12:45 PM Revision 090dd9ba (taxeditor): - set multiline flag for LanguageStringWithLabelElement #2248
- 12:06 PM Revision 7e9949c5 (cdmlib): - removed unused code
- 12:06 PM Revision a6e9cd03 (cdmlib): - implemented service method (and test for it) to get all taxa associated with a single specimen
- 10:35 AM Revision a8c659ac (cdm-dataportal): fixing #4514 (Corvidae: dynabox not working in somce cases)
- 10:29 AM Revision ccc9031c (cdm-dataportal): fixing #4516 (Reference footnotes not shown in text-features)
- 09:54 AM Revision 396701ca (taxeditor): - added clear button to DerivateSearchView
- - made use of cdmlib service to get associated specimen for one taxon (#4506)
- 09:53 AM Revision aebfd8da (cdmlib): - added listAssociatedTaxa() method to occurrence service (non functional)
11/25/2014
- 07:57 PM Revision e4900d3e (taxeditor): Adjustments to recent changes in LibrAlign package structure.
- 07:37 PM Revision c33bb983 (taxeditor): URI property for PherogramView added.
- PherogramViews can be opened by double clicking a pherogram in AlignmentEditor.
AlignmentEditor saves URIs for each p... - 03:23 PM Revision d3825388 (taxeditor): made bug fixes for:
- * disabled rank editing support
* empty values are no longer displayed with a "-"
* Checklist Editor is now activated... - 02:06 PM Revision 8f4eb9ce (cdm-dataportal): implementing #4515 (automatically disable fsi viewer on unsupported devices)
- 02:06 PM Revision ef12d0c6 (cdm-dataportal): typo
- 01:56 PM Revision fd6cdafb (taxeditor): changed classpath to 3.5.0
- 01:33 PM Revision b8548a34 (taxeditor): added checks to makes sure no other exception is thrown within the dialog creation code #4502.
- 01:13 PM Revision be3a43d5 (taxeditor): changed cdmlib version
- 01:09 PM Revision bf4ad8ff (cdmlib): changed version numbers
- 01:02 PM Revision e77ecd48 (cdmlib): create branch to make redlist deployment stable
- 12:04 PM Revision 92a8bb2a (taxeditor): Adjustments to recent changes in LibrAlign package structure.
- 11:57 AM Revision 919bf084 (taxeditor): language display bug should be fixed
- 11:34 AM Revision a8ae8923 (cdm-dataportal): implemented #4504 (suppressed name in source info which have the same name as the current taxon)
- 11:14 AM Revision 255f5734 (cdm-dataportal): refining descriptions for classification filter
- 10:08 AM feature request #4511 (Rejected): Remove white space below EntitySelectionElement
- Remove white space below EntitySelectionElement
- 10:07 AM feature request #4510 (New): Reduce standard height of description text in DetailsView
- On smaller screens you have to scroll down to get to the other sections because the empty text field is taking that m...
- 10:05 AM feature request #4509 (New): Merge Supplemental Data section into DetailsView
- It should be configurable via preferences which sections are visible in the DetailsView.
- 10:02 AM Revision 01b3ade8 (taxeditor): - added context menu entry to taxon navigator to open associated derivates in DerivateEditor
- - added taxon filter to DerivateSearchView (non-functional) (#4506)
11/24/2014
- 05:32 PM Revision ad5252d9 (cdmlib): removed unwanted service field
- 05:28 PM Revision 3ce0fa86 (cdmlib): Fix (more of a hack) for conversation holder problem, subclassing the current servlet and setting the conversation so that it is bound every time a service call is made.
- 04:04 PM Revision 0639ca2a (cdm-dataportal): implementing #4042 (Show URI and DOIs for References)
- 04:04 PM Revision 38b27a36 (cdm-dataportal): installing font-awesome 4.2.0 and implementing function for consitent use
- 04:03 PM Revision 57d513cb (cdm-dataportal): sources as bibliography per feature block
- 04:03 PM Revision ebbdbf60 (cdm-dataportal): fixing bug: taking also the userdefined defaults into account
- 04:03 PM Revision 8c962983 (cdm-dataportal): feature block settings with defaults
- 04:03 PM Revision 57e829ae (cdm-dataportal): updating zen theme to version 7.x-5.5
- 03:23 PM Revision db81978c (taxeditor): latest changes from trunk
- 01:50 PM feature request #3580: Write permission error with temporary cdmserver echache dir
- Replying to [[comment1|c.mathew]]:
> Changed cache folder in settings to user.home/.cdm-server-echache (r18309). Not... - 01:33 PM feature request #3580: Write permission error with temporary cdmserver echache dir
- Seems to be fixed. Can we close this ?
- 01:29 PM feature request #4452: p2 update problem with nebula compositetable dependency
- Moving tickets to 3.4.1 milestone
- 01:29 PM feature request #4246: Allow inserting a new node at the beginning or somewhere else in the Polytomous Key tree
- Moving tickets to 3.4.1 milestone
- 01:29 PM feature request #3746: Implement time period scope for description elements in TaxEditor
- Moving tickets to 3.4.1 milestone
- 01:29 PM task #3603: Remove creation of dummy DefinedTerm when creating new Term related entities
- Moving tickets to 3.4.1 milestone
- 01:29 PM bug #3536: Incorrect last version documentation for Editor
- Moving tickets to 3.4.1 milestone
- 01:29 PM feature request #3337: Correct multiple occurrences of basionym within a homotypic group
- Moving tickets to 3.4.1 milestone
- 01:29 PM bug #2957: running maven site:site for Taxonomic Editor fails
- Moving tickets to 3.4.1 milestone
- 01:29 PM feature request #2380: TaxonNavigator should work with DTO objects instead of full blown cdm instances
- Moving tickets to 3.4.1 milestone
- 11:50 AM Revision e808e65c (cdmlib): setting java source compliance to version 1.7
- 11:47 AM Revision 10c47677 (taxeditor): - added some more molecular parameters to the DetailsView
- 11:16 AM Revision 902350ad (taxeditor): - removed unused code
- 10:12 AM Revision add829e5 (taxeditor): - converted dnaQuality from DefinedTerm to OrderedTerm (#4434)
- 10:12 AM Revision adac5022 (cdmlib): - converted dnaQuality from DefinedTerm to OrderedTerm (#4434)
- 09:37 AM Revision 5702e33d (taxeditor): - adapted to cdmlib changes (#4434)
11/21/2014
- 05:45 PM feature request #4499: Implement fields for typical StatisticalMeasurementValues
- One problem that arises is the correct use of numbers in Java, Hibernate + DB. For correct rounding etc. we should be...
- 02:42 PM feature request #4499 (New): Implement fields for typical StatisticalMeasurementValues
- To simplify the handling of quantitative data we may want to add concrete fields for min, max, average, sampleSize, t...
- 03:36 PM Revision fa927d2c (cdmlib): whitespace
- 03:36 PM Revision 22687d2b (cdmlib): ignoring VAADIN compilation artefacts
- 03:36 PM Revision 5bdac292 (cdmlib): adding documentation URL to commentn
- 03:36 PM Revision 0e847a56 (cdmlib): adding missing log4j.properties to artifact (fixes excessive loggin on DEBUG level)
- 02:21 PM Revision 502ea305 (cdmlib): Add institution to DerivationEvent and Amplification
- 01:55 PM Revision 0e660e76 (cdmlib): add DnaMarker to Primer #4470
- 10:38 AM Revision bbe6519f (cdmlib): fix bug, add OrederedTerm to hibernate cfg
- 10:24 AM Revision 0386b59c (cdmlib)
- 10:16 AM Revision 710c18d5 (cdmlib): add DNA Quality Type vocabulary
11/20/2014
- 05:53 PM Revision a8591c9c (taxeditor): First version of PherogramView added.
- 04:42 PM Revision 3ae67486 (taxeditor): ToggleInsertOverwriteButton and ToggleLeftRightInsertionButton (currently only forward) linked to according functionality in LibrAlign.
- 04:20 PM Revision 88572bd4 (cdmlib): added test for saveOrUpdate within conversation sessions
- 04:19 PM feature request #4490: Make the label of the taxon page tabs customizable for portal admins
- Have we agreed on "Specimens & Observations"? Labeles should be short ! We also discussed "Occurrences". As we have m...
- 01:00 PM feature request #4490: Make the label of the taxon page tabs customizable for portal admins
- This should be solved in a general way, therefore I am changing the ticket title.
Its already implementd in the the... - 12:05 PM feature request #4490 (Closed): Make the label of the taxon page tabs customizable for portal admins
- For the specimen tab:
"I think that "Specimens" might be a good default and only if you also handle observations... - 02:53 PM Revision e8cc5fb9 (taxeditor): - added preference for showing Collecting Areas below Country in DetailsView (#4473)
- 11:54 AM feature request #4488: Specimen data points in map should show FieldUnit information
- Could the first solution be implemented by the map service itself?
- 11:53 AM feature request #4488 (Closed): Specimen data points in map should show FieldUnit information
- Possible solutions:
* show a tooltip when hovering over the point
* ~~click on point selects the item in the ta... - 11:44 AM feature request #4484 (New): Evaluate publish flag for derivates in data portal
- Evaluate publish flag for derivates in data portal
Possible duplicate:
#7444 - 11:21 AM Revision 42654134 (cdm-dataportal): - renamed table column
- 11:15 AM Revision b3271304 (taxeditor): - made use of TermType DnaQuality
- 10:42 AM Revision f22ca8aa (taxeditor): - added static method to DerivateLabelProvider to get the derivate text
- - refactored moving of derivates to use the operation framework.
- immplemented undo/redo - 10:41 AM Revision eb65444b (taxeditor): - DerivateView and BulkEditor trigger selection change event for MediaViewPart (fixes #4475)
- 10:36 AM Revision 20ced855 (taxeditor): - DerivedUnits DetailsView only shows FieldUnit data in titleCache (fixes #4474)
- - Areas section is now shown below country for FieldUnits (fixes 4473)
- 10:34 AM Revision 123de414 (taxeditor): - Rights section is now part of MediaSpecimen DetailsView (fixes #4472)
- - DerivedUnits DetailsView only shows FieldUnit data in titleCache (fixes #4474)
11/19/2014
- 05:44 PM Revision b2bc9ad8 (cdmlib): Branch for model 3.4.1
- 05:44 PM Revision d979d3a0 (cdmlib): Add DnaQuality.csv (not fully ready)
- 05:31 PM Revision 897f03dd (cdmlib): fixing component scan in jars
- 03:09 PM Revision 413a42dd (cdm-dataportal): adapting test to fix comitted in r22085
- 02:46 PM Revision 62bc913b (taxeditor): changed icons for checklist editor
- 01:06 PM Revision 561eeefe (taxeditor): removed MediaView from perspective
11/18/2014
- 05:53 PM bug #4465: Handle Drag and Drop for Synonyms
- Hallo,
ich wollte ein Synonym per Drag&Drop von einem Taxon zu einem anderen schieben und dann speichern. Habe es m... - 05:53 PM bug #4465 (Worksforme): Handle Drag and Drop for Synonyms
- Currently if you drag & drop a synonym from 1 Editor to another it works but data can not be saved as we are in a dif...
- 03:59 PM Revision ee80eadc (taxeditor): Update on ChecklistPerspective, added ConcepView
- 03:22 PM Revision 4483d1dd (taxeditor): added checklist perspective to taxonomic editor
- 02:47 PM Revision 68224814 (taxeditor): - extended DerivateSearchView to allow multiple selection
- - added context menu to open multiple elements in DerivateView
- extended DerivateView to show multiple derivate hie... - 02:44 PM Revision 1cc6bcd1 (cdmlib): - when moving derivate also set "derivedFrom" to the new DerivationEvent
- 02:04 PM Revision 896d9872 (taxeditor): branding the branch
- 01:34 PM Revision 97d06fef (taxeditor): creating branch for rl project
- 12:59 PM Revision affad970 (cdm-dataportal): deleting discontinued module, see http://dev.e-taxonomy.eu/svn/tags/drupal/dwca_export for last state
- 10:28 AM Revision c3f81c22 (taxeditor): remotingApplicationContext : now using the cachers from cdmlib
- CdmServiceCacher : added unimplemented method
- 09:52 AM Revision 03aae089 (cdmlib): ICdmCacher, DefaultTermInitializer : added comments
- CdmCacher : added code to disallow null values in cache and moved term initialisation code to specific subclass
CdmDa...
11/17/2014
- 06:31 PM Revision efe169cc (cdmlib): cleanup javadoc
- 05:50 PM Revision 66bd03c6 (cdmlib): update JaxbImportActivator
- 05:47 PM Revision 0b1a89f0 (cdmlib-apps): update JaxbImportActivator
- 05:46 PM Revision 003ff122 (cdmlib-apps): update JaxbImportActivator
- 04:12 PM Revision 777fb340 (cdmlib-apps): minor
- 04:12 PM Revision f4c01f8e (cdmlib-apps): minor
- 04:03 PM Revision bb3188cb (cdm-dataportal): feature block setting 'Link to name used in source' now working in all cases
- 02:10 PM Revision a3a91fc4 (cdm-dataportal): restoring erroneously deleted dwca_export.module
- 02:07 PM Revision 642b323b (cdm-dataportal): implementing ui for feature block settings, solves #4464 (Admin section for feature block setting implemented)
- 01:39 PM Revision b8250996 (taxeditor): #4463 fixed
- if a titlecache is updated and the position of the parsing problem is behind the actual text no position is created.
- 10:54 AM Revision e139a136 (taxeditor): - exported eu.etaxonomy.cdm.io.csv.redlist.demo package to fix compile errors
11/14/2014
- 05:31 PM Revision a7dea870 (cdmlib): made changes to be compliant with TaxonomicEditor Export
- 05:29 PM Revision 4b75d033 (taxeditor): Added simple CSV Export to Taxonomic Editor
- 04:10 PM Revision 08c97e7c (cdmlib): reverting eclipse launcher
- 03:36 PM Revision 91c32ac7 (utis-webapp): updating to spring 3.2.7.RELEASE and downgrading swagger-springmvc to 9.0.0, also changing the way errors are reportes back to the web client
11/13/2014
- 04:23 PM Revision a5e4d895 (cdmlib): minor
- 04:22 PM Revision 44ebd614 (cdmlib-apps): minor
- 04:17 PM Revision e15e7ef6 (cdmlib): improve cache update algorithm
- 03:43 PM Revision 3ccfa7de (cdm-dataportal): Deleting discontinued modules 7.x/modules/dwca_export and 7.x/modules/dwca_export_view the development of this module is continued by the NHM
- 03:12 PM bug #4461 (Closed): Ordering in datasources view fails
- Hi,
when I try to order the datasource view by Servers, the result is often incomplete as you can see in the be...
11/12/2014
- 05:30 PM Revision df989a18 (taxeditor): added recursive loading for collection and maps and also correspoding tests.
- cleanup of code.
- 03:41 PM Revision c8ea97e3 (cdmlib): - fixed possible NPE
- 03:35 PM Revision 686f8a4c (taxeditor): - updated molecular DetailsViews according to requirements
- 03:31 PM Revision 1446141f (cdmlib): - fixed typo with semantic meaning
- 01:35 PM Revision b55c6380 (utis-webapp): fixing issue #1 - NPE in UtisController.search()
- 01:34 PM Revision 978db844 (utis-webapp): updating swagger-springmvc to 9.0.1
- 12:41 PM bug #4458: Advanced Media DetailsView only implemented for ImageFiles
- added AK as he is also involved in the integration of other media types into the CDM
- 09:43 AM bug #4458 (New): Advanced Media DetailsView only implemented for ImageFiles
- The DetailsView for Media (when in advanced mode) only creates ImageFiles as MediaRepresentationParts. This will lead...
- 11:28 AM Revision 5117a754 (cdmlib): - used blank data set for test
- 11:17 AM Revision 6882da59 (cdm-dataportal): changing default of feature block setting 'as_list' from ul to div
- 09:51 AM Revision 03d5f058 (taxeditor): - used ImageFile instead of more generic MediaRepresentationPart when creating the Media (fixes #4402)
- - fixed a typo
- 09:51 AM Revision 0a5d335c (cdmlib): - used ImageFile instead of more generic MediaRepresentationPart when creating the Media (fixes #4402)
- - fixed a typo
- 09:27 AM Revision eecb44d0 (taxeditor): merge from trunk
11/11/2014
- 06:59 PM Revision cd63800b (taxeditor): merge from trunk
- 06:58 PM Revision b44e8184 (taxeditor): added tests for recursive cdm entity loading and updated corresponding code
- 02:11 PM Revision 11c03192 (taxeditor): - moved OriginalLabelData section to 2nd position
- - made text field fill horizontally
- 09:34 AM Revision d0ba58fc (taxeditor): - refactored DerivateViewEditorInput to use UUIDs instead of CDM entities
- - added delete operation to DerivateView (currently only deleting leafs of the derivate tree is allowed)
- 09:33 AM Revision 2554cb27 (cdmlib): - added delete configurator to occurence service
- 09:18 AM Revision 5c58acf0 (cdmlib): - fixed typo
11/10/2014
- 04:58 PM Revision 4ee7a509 (cdm-dataportal): - added toggle option to settings for enabling/disabling "Determined as" information in compressed specimen table
- - some label text changes
- 09:55 AM Revision 9a826147 (taxeditor): fixing problems in bulkeditor and minor
- 09:49 AM Revision 0f8d094a (cdmlib): changes in service layer for fixes in bulg editor and search for misapplied names and common names in editor
11/06/2014
- 12:54 PM Revision f027f0cd (cdmlib): minor
11/05/2014
- 01:01 PM Revision 7932fad4 (taxeditor): - added toolbar buttons for toggling the different insertion modes
- - added menu entry to load pherogram (also possible with shortcut CTRL+O)
- added status bar indicating the current ... - 12:59 PM Revision c47cde98 (taxeditor): - merge-update from trunk
11/04/2014
- 03:57 PM Revision b04e3804 (taxeditor): - merge-update from trunk
- 03:54 PM Revision e9af0bd6 (taxeditor): - fixed possible NPE
- 02:58 PM Revision 25ec2e67 (cdmlib): - provide contig and read information in portal and webservice
- 02:58 PM Revision 2251918f (cdm-dataportal): - provide contig and read information in portal and webservice
- 02:56 PM Revision 59777165 (taxeditor): - used more pepresentative DerivationEventTypes when creating derivates via DerivatView
- 10:41 AM Revision 17d9afae (taxeditor): merge-update from trunk
11/03/2014
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