Activity
From 10/26/2014 to 11/24/2014
11/24/2014
- 05:32 PM Revision ad5252d9 (cdmlib): removed unwanted service field
- 05:28 PM Revision 3ce0fa86 (cdmlib): Fix (more of a hack) for conversation holder problem, subclassing the current servlet and setting the conversation so that it is bound every time a service call is made.
- 04:04 PM Revision 0639ca2a (cdm-dataportal): implementing #4042 (Show URI and DOIs for References)
- 04:04 PM Revision 38b27a36 (cdm-dataportal): installing font-awesome 4.2.0 and implementing function for consitent use
- 04:03 PM Revision 57d513cb (cdm-dataportal): sources as bibliography per feature block
- 04:03 PM Revision ebbdbf60 (cdm-dataportal): fixing bug: taking also the userdefined defaults into account
- 04:03 PM Revision 8c962983 (cdm-dataportal): feature block settings with defaults
- 04:03 PM Revision 57e829ae (cdm-dataportal): updating zen theme to version 7.x-5.5
- 03:23 PM Revision db81978c (taxeditor): latest changes from trunk
- 01:50 PM feature request #3580: Write permission error with temporary cdmserver echache dir
- Replying to [[comment1|c.mathew]]:
> Changed cache folder in settings to user.home/.cdm-server-echache (r18309). Not... - 01:33 PM feature request #3580: Write permission error with temporary cdmserver echache dir
- Seems to be fixed. Can we close this ?
- 01:29 PM feature request #4452: p2 update problem with nebula compositetable dependency
- Moving tickets to 3.4.1 milestone
- 01:29 PM feature request #4246: Allow inserting a new node at the beginning or somewhere else in the Polytomous Key tree
- Moving tickets to 3.4.1 milestone
- 01:29 PM feature request #3746: Implement time period scope for description elements in TaxEditor
- Moving tickets to 3.4.1 milestone
- 01:29 PM task #3603: Remove creation of dummy DefinedTerm when creating new Term related entities
- Moving tickets to 3.4.1 milestone
- 01:29 PM bug #3536: Incorrect last version documentation for Editor
- Moving tickets to 3.4.1 milestone
- 01:29 PM feature request #3337: Correct multiple occurrences of basionym within a homotypic group
- Moving tickets to 3.4.1 milestone
- 01:29 PM bug #2957: running maven site:site for Taxonomic Editor fails
- Moving tickets to 3.4.1 milestone
- 01:29 PM feature request #2380: TaxonNavigator should work with DTO objects instead of full blown cdm instances
- Moving tickets to 3.4.1 milestone
- 11:50 AM Revision e808e65c (cdmlib): setting java source compliance to version 1.7
- 11:47 AM Revision 10c47677 (taxeditor): - added some more molecular parameters to the DetailsView
- 11:16 AM Revision 902350ad (taxeditor): - removed unused code
- 10:12 AM Revision add829e5 (taxeditor): - converted dnaQuality from DefinedTerm to OrderedTerm (#4434)
- 10:12 AM Revision adac5022 (cdmlib): - converted dnaQuality from DefinedTerm to OrderedTerm (#4434)
- 09:37 AM Revision 5702e33d (taxeditor): - adapted to cdmlib changes (#4434)
11/21/2014
- 05:45 PM feature request #4499: Implement fields for typical StatisticalMeasurementValues
- One problem that arises is the correct use of numbers in Java, Hibernate + DB. For correct rounding etc. we should be...
- 02:42 PM feature request #4499 (New): Implement fields for typical StatisticalMeasurementValues
- To simplify the handling of quantitative data we may want to add concrete fields for min, max, average, sampleSize, t...
- 03:36 PM Revision fa927d2c (cdmlib): whitespace
- 03:36 PM Revision 22687d2b (cdmlib): ignoring VAADIN compilation artefacts
- 03:36 PM Revision 5bdac292 (cdmlib): adding documentation URL to commentn
- 03:36 PM Revision 0e847a56 (cdmlib): adding missing log4j.properties to artifact (fixes excessive loggin on DEBUG level)
- 02:21 PM Revision 502ea305 (cdmlib): Add institution to DerivationEvent and Amplification
- 01:55 PM Revision 0e660e76 (cdmlib): add DnaMarker to Primer #4470
- 10:38 AM Revision bbe6519f (cdmlib): fix bug, add OrederedTerm to hibernate cfg
- 10:24 AM Revision 0386b59c (cdmlib)
- 10:16 AM Revision 710c18d5 (cdmlib): add DNA Quality Type vocabulary
11/20/2014
- 05:53 PM Revision a8591c9c (taxeditor): First version of PherogramView added.
- 04:42 PM Revision 3ae67486 (taxeditor): ToggleInsertOverwriteButton and ToggleLeftRightInsertionButton (currently only forward) linked to according functionality in LibrAlign.
- 04:20 PM Revision 88572bd4 (cdmlib): added test for saveOrUpdate within conversation sessions
- 04:19 PM feature request #4490: Make the label of the taxon page tabs customizable for portal admins
- Have we agreed on "Specimens & Observations"? Labeles should be short ! We also discussed "Occurrences". As we have m...
- 01:00 PM feature request #4490: Make the label of the taxon page tabs customizable for portal admins
- This should be solved in a general way, therefore I am changing the ticket title.
Its already implementd in the the... - 12:05 PM feature request #4490 (Closed): Make the label of the taxon page tabs customizable for portal admins
- For the specimen tab:
"I think that "Specimens" might be a good default and only if you also handle observations... - 02:53 PM Revision e8cc5fb9 (taxeditor): - added preference for showing Collecting Areas below Country in DetailsView (#4473)
- 11:54 AM feature request #4488: Specimen data points in map should show FieldUnit information
- Could the first solution be implemented by the map service itself?
- 11:53 AM feature request #4488 (Closed): Specimen data points in map should show FieldUnit information
- Possible solutions:
* show a tooltip when hovering over the point
* ~~click on point selects the item in the ta... - 11:44 AM feature request #4484 (New): Evaluate publish flag for derivates in data portal
- Evaluate publish flag for derivates in data portal
Possible duplicate:
#7444 - 11:21 AM Revision 42654134 (cdm-dataportal): - renamed table column
- 11:15 AM Revision b3271304 (taxeditor): - made use of TermType DnaQuality
- 10:42 AM Revision f22ca8aa (taxeditor): - added static method to DerivateLabelProvider to get the derivate text
- - refactored moving of derivates to use the operation framework.
- immplemented undo/redo - 10:41 AM Revision eb65444b (taxeditor): - DerivateView and BulkEditor trigger selection change event for MediaViewPart (fixes #4475)
- 10:36 AM Revision 20ced855 (taxeditor): - DerivedUnits DetailsView only shows FieldUnit data in titleCache (fixes #4474)
- - Areas section is now shown below country for FieldUnits (fixes 4473)
- 10:34 AM Revision 123de414 (taxeditor): - Rights section is now part of MediaSpecimen DetailsView (fixes #4472)
- - DerivedUnits DetailsView only shows FieldUnit data in titleCache (fixes #4474)
11/19/2014
- 05:44 PM Revision b2bc9ad8 (cdmlib): Branch for model 3.4.1
- 05:44 PM Revision d979d3a0 (cdmlib): Add DnaQuality.csv (not fully ready)
- 05:31 PM Revision 897f03dd (cdmlib): fixing component scan in jars
- 03:09 PM Revision 413a42dd (cdm-dataportal): adapting test to fix comitted in r22085
- 02:46 PM Revision 62bc913b (taxeditor): changed icons for checklist editor
- 01:06 PM Revision 561eeefe (taxeditor): removed MediaView from perspective
11/18/2014
- 05:53 PM bug #4465: Handle Drag and Drop for Synonyms
- Hallo,
ich wollte ein Synonym per Drag&Drop von einem Taxon zu einem anderen schieben und dann speichern. Habe es m... - 05:53 PM bug #4465 (Worksforme): Handle Drag and Drop for Synonyms
- Currently if you drag & drop a synonym from 1 Editor to another it works but data can not be saved as we are in a dif...
- 03:59 PM Revision ee80eadc (taxeditor): Update on ChecklistPerspective, added ConcepView
- 03:22 PM Revision 4483d1dd (taxeditor): added checklist perspective to taxonomic editor
- 02:47 PM Revision 68224814 (taxeditor): - extended DerivateSearchView to allow multiple selection
- - added context menu to open multiple elements in DerivateView
- extended DerivateView to show multiple derivate hie... - 02:44 PM Revision 1cc6bcd1 (cdmlib): - when moving derivate also set "derivedFrom" to the new DerivationEvent
- 02:04 PM Revision 896d9872 (taxeditor): branding the branch
- 01:34 PM Revision 97d06fef (taxeditor): creating branch for rl project
- 12:59 PM Revision affad970 (cdm-dataportal): deleting discontinued module, see http://dev.e-taxonomy.eu/svn/tags/drupal/dwca_export for last state
- 10:28 AM Revision c3f81c22 (taxeditor): remotingApplicationContext : now using the cachers from cdmlib
- CdmServiceCacher : added unimplemented method
- 09:52 AM Revision 03aae089 (cdmlib): ICdmCacher, DefaultTermInitializer : added comments
- CdmCacher : added code to disallow null values in cache and moved term initialisation code to specific subclass
CdmDa...
11/17/2014
- 06:31 PM Revision efe169cc (cdmlib): cleanup javadoc
- 05:50 PM Revision 66bd03c6 (cdmlib): update JaxbImportActivator
- 05:47 PM Revision 0b1a89f0 (cdmlib-apps): update JaxbImportActivator
- 05:46 PM Revision 003ff122 (cdmlib-apps): update JaxbImportActivator
- 04:12 PM Revision 777fb340 (cdmlib-apps): minor
- 04:12 PM Revision f4c01f8e (cdmlib-apps): minor
- 04:03 PM Revision bb3188cb (cdm-dataportal): feature block setting 'Link to name used in source' now working in all cases
- 02:10 PM Revision a3a91fc4 (cdm-dataportal): restoring erroneously deleted dwca_export.module
- 02:07 PM Revision 642b323b (cdm-dataportal): implementing ui for feature block settings, solves #4464 (Admin section for feature block setting implemented)
- 01:39 PM Revision b8250996 (taxeditor): #4463 fixed
- if a titlecache is updated and the position of the parsing problem is behind the actual text no position is created.
- 10:54 AM Revision e139a136 (taxeditor): - exported eu.etaxonomy.cdm.io.csv.redlist.demo package to fix compile errors
11/14/2014
- 05:31 PM Revision a7dea870 (cdmlib): made changes to be compliant with TaxonomicEditor Export
- 05:29 PM Revision 4b75d033 (taxeditor): Added simple CSV Export to Taxonomic Editor
- 04:10 PM Revision 08c97e7c (cdmlib): reverting eclipse launcher
- 03:36 PM Revision 91c32ac7 (utis-webapp): updating to spring 3.2.7.RELEASE and downgrading swagger-springmvc to 9.0.0, also changing the way errors are reportes back to the web client
11/13/2014
- 04:23 PM Revision a5e4d895 (cdmlib): minor
- 04:22 PM Revision 44ebd614 (cdmlib-apps): minor
- 04:17 PM Revision e15e7ef6 (cdmlib): improve cache update algorithm
- 03:43 PM Revision 3ccfa7de (cdm-dataportal): Deleting discontinued modules 7.x/modules/dwca_export and 7.x/modules/dwca_export_view the development of this module is continued by the NHM
- 03:12 PM bug #4461 (Closed): Ordering in datasources view fails
- Hi,
when I try to order the datasource view by Servers, the result is often incomplete as you can see in the be...
11/12/2014
- 05:30 PM Revision df989a18 (taxeditor): added recursive loading for collection and maps and also correspoding tests.
- cleanup of code.
- 03:41 PM Revision c8ea97e3 (cdmlib): - fixed possible NPE
- 03:35 PM Revision 686f8a4c (taxeditor): - updated molecular DetailsViews according to requirements
- 03:31 PM Revision 1446141f (cdmlib): - fixed typo with semantic meaning
- 01:35 PM Revision b55c6380 (utis-webapp): fixing issue #1 - NPE in UtisController.search()
- 01:34 PM Revision 978db844 (utis-webapp): updating swagger-springmvc to 9.0.1
- 12:41 PM bug #4458: Advanced Media DetailsView only implemented for ImageFiles
- added AK as he is also involved in the integration of other media types into the CDM
- 09:43 AM bug #4458 (New): Advanced Media DetailsView only implemented for ImageFiles
- The DetailsView for Media (when in advanced mode) only creates ImageFiles as MediaRepresentationParts. This will lead...
- 11:28 AM Revision 5117a754 (cdmlib): - used blank data set for test
- 11:17 AM Revision 6882da59 (cdm-dataportal): changing default of feature block setting 'as_list' from ul to div
- 09:51 AM Revision 03d5f058 (taxeditor): - used ImageFile instead of more generic MediaRepresentationPart when creating the Media (fixes #4402)
- - fixed a typo
- 09:51 AM Revision 0a5d335c (cdmlib): - used ImageFile instead of more generic MediaRepresentationPart when creating the Media (fixes #4402)
- - fixed a typo
- 09:27 AM Revision eecb44d0 (taxeditor): merge from trunk
11/11/2014
- 06:59 PM Revision cd63800b (taxeditor): merge from trunk
- 06:58 PM Revision b44e8184 (taxeditor): added tests for recursive cdm entity loading and updated corresponding code
- 02:11 PM Revision 11c03192 (taxeditor): - moved OriginalLabelData section to 2nd position
- - made text field fill horizontally
- 09:34 AM Revision d0ba58fc (taxeditor): - refactored DerivateViewEditorInput to use UUIDs instead of CDM entities
- - added delete operation to DerivateView (currently only deleting leafs of the derivate tree is allowed)
- 09:33 AM Revision 2554cb27 (cdmlib): - added delete configurator to occurence service
- 09:18 AM Revision 5c58acf0 (cdmlib): - fixed typo
11/10/2014
- 04:58 PM Revision 4ee7a509 (cdm-dataportal): - added toggle option to settings for enabling/disabling "Determined as" information in compressed specimen table
- - some label text changes
- 09:55 AM Revision 9a826147 (taxeditor): fixing problems in bulkeditor and minor
- 09:49 AM Revision 0f8d094a (cdmlib): changes in service layer for fixes in bulg editor and search for misapplied names and common names in editor
11/06/2014
- 12:54 PM Revision f027f0cd (cdmlib): minor
11/05/2014
- 01:01 PM Revision 7932fad4 (taxeditor): - added toolbar buttons for toggling the different insertion modes
- - added menu entry to load pherogram (also possible with shortcut CTRL+O)
- added status bar indicating the current ... - 12:59 PM Revision c47cde98 (taxeditor): - merge-update from trunk
11/04/2014
- 03:57 PM Revision b04e3804 (taxeditor): - merge-update from trunk
- 03:54 PM Revision e9af0bd6 (taxeditor): - fixed possible NPE
- 02:58 PM Revision 25ec2e67 (cdmlib): - provide contig and read information in portal and webservice
- 02:58 PM Revision 2251918f (cdm-dataportal): - provide contig and read information in portal and webservice
- 02:56 PM Revision 59777165 (taxeditor): - used more pepresentative DerivationEventTypes when creating derivates via DerivatView
- 10:41 AM Revision 17d9afae (taxeditor): merge-update from trunk
11/03/2014
- 10:43 AM Revision 0ae57522 (cdm-dataportal): - renamed "Image" column to "Scan"
- 10:30 AM Revision 7d8ef9fa (cdm-dataportal): - showing contig and primer info in compressed specimen table
- 10:29 AM Revision 74a3f355 (cdmlib): - extende DerivateHierarchyDTO to also show contig and primer info
10/30/2014
- 11:44 AM Revision ee086833 (taxeditor)
- 11:43 AM Revision 5ba870c3 (taxeditor): fixing #2547
10/29/2014
- 07:01 PM Revision b25ac0b0 (taxeditor): session object for remoting
- 07:00 PM Revision 403ca5d6 (taxeditor): added code + config for caching mechanism
- 06:56 PM Revision 72be444d (taxeditor): added,
- CdmModelGetMethodCacherTest : for testing the hibernate class mappings get methods caching process
CdmClientCachingTe... - 06:51 PM Revision 24b716c5 (taxeditor): removed unnecessary imports
- 04:17 PM Revision fc0e0269 (taxeditor): new empty db confirming to model 3.4.0
- 03:50 PM Revision 8ee49799 (taxeditor): - fixed class cast exception
- 03:10 PM Revision ea599416 (cdmlib): - removed comma in specimen citation
- 01:18 PM Revision bf052da5 (taxeditor)
- 01:17 PM Revision aa3535e0 (cdmlib)
- 11:39 AM Revision ba11b78e (taxeditor): - added exception throwing to URI assembly in Sequence class
- - handled exception in editor details view
- 11:39 AM Revision 3f9e57cd (cdmlib): - added exception throwing to URI assembly in Sequence class
- - handled exception in editor details view
- 11:38 AM Revision a6b6b197 (taxeditor): - added elevation to section title
- 11:38 AM Revision 29186120 (taxeditor): - applied coding conventions
- 10:11 AM feature request #4452: p2 update problem with nebula compositetable dependency
- Good point. I don't see a mention of the license on the project site http://www.eclipse.org/nebula/downloads.php, but...
- 12:00 AM feature request #4452: p2 update problem with nebula compositetable dependency
- Replying to [[comment1|c.mathew]]:
> The more long-term solution will be to have our own p2 repository with these p... - 09:37 AM Revision 9ca576c2 (taxeditor): - fixed possible SessionException
10/28/2014
- 07:25 PM Revision 217e7cc8 (taxeditor): - adapted derivate hierarchy assembly to cdmlib3.4 changes (TissueSample, DnaSample as one class)
- 07:24 PM Revision 072913b2 (cdmlib): - adapted derivate hierarchy assembly to cdmlib3.4 changes (TissueSample, DnaSample as one class)
- 07:22 PM Revision cc4d4499 (cdm-dataportal): fixed possible NPE and handling of null values
- 07:20 PM Revision cacc2f39 (cdmlib): - extended init test
- 06:14 PM feature request #4452 (In Progress): p2 update problem with nebula compositetable dependency
- changed nebula p2 repository to the one which is archived but stable (retention period of 2 years starting Q32014) - ...
- 05:47 PM feature request #4452 (Closed): p2 update problem with nebula compositetable dependency
- The eclipse nebula compositetable dependency blocks the update of the taxeditor , since the taxeditor update mechanis...
- 05:52 PM Revision 7a46f22e (taxeditor): eu.etaxonomy.taxeditor/pom.xml : reverted addition of nebula widget jars
- pom.xml : changed nebula repository to archived one
eu.etaxonomy.taxeditor/rcp.target : changed composite table jar w... - 03:45 PM Revision 375fee3c (taxeditor): removed version dependency for org.eclipse.nebula.widgets.compositetable
- and added the composite table jar to the p2 update
- 03:27 PM Revision 1fec1343 (cdmlib): - made constructor protected to avoid JavaAssistEnhancementException
- 02:10 PM Revision 39b2e2be (taxeditor): fix #4450
- 02:09 PM Revision 5b62196b (cdmlib): fix #4450
- 02:07 PM Revision 1e4d6638 (cdmlib): Changes for production mode for vaadin
- 09:53 AM Revision 2cddaf32 (taxeditor): added space between beta prefix and version
10/27/2014
- 04:37 PM Revision 0d1e14df (cdmlib): changed startup parameter for vaadin. Only for testing.
- 04:33 PM Revision 79ef938c (taxeditor): Basic implementation for LoadPherogramHandler added. (Imported data is currently not displayed due to currently unimplemented support for adding sequences and data areas during runtime in LibrAlign.)
- 03:53 PM Revision a02b0ad6 (taxeditor): Example in AlignmentEditor now relies on an editable SequenceDataProvider (and contains not more predefined base call alignment edits).
- Minor changes.
- 03:35 PM Revision 64028752 (taxeditor): Comments added to LoadPherogramHandler.
- Pherogram example file paths adjusted again. (This time the other ones are still present as comments.)
- 02:45 PM Revision 26254193 (taxeditor): merge-update from trunk
- 02:45 PM Revision 136543c0 (taxeditor): merge-update from trunk
- 01:48 PM Revision 7c6e83fe (taxeditor): - fixed double exception dialog popup when not connected to data source
- - fixed NPE when starting ABCD import with dirty editors
- 11:50 AM Revision 63b961d3 (taxeditor): - fixed possible NPE when entering DnaQuality data
- 11:38 AM Revision b39ef2c4 (cdmlib): latest changes for Vaadin Editor
- * added in Web.XML production mode
- 11:24 AM Revision 003cd10b (cdmlib-apps)
- 11:21 AM Revision 5970cb82 (cdmlib)
- 11:20 AM Revision 8a5b8f34 (cdmlib)
- 10:22 AM Revision 463e5920 (taxeditor): - implemented missing interface method
- 09:09 AM Revision 2f4fd039 (cdmlib): - added service method deleteDerivateHierarchy()
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