Activity
From 10/17/2014 to 11/15/2014
11/14/2014
- 05:31 PM Revision a7dea870 (cdmlib): made changes to be compliant with TaxonomicEditor Export
- 05:29 PM Revision 4b75d033 (taxeditor): Added simple CSV Export to Taxonomic Editor
- 04:10 PM Revision 08c97e7c (cdmlib): reverting eclipse launcher
- 03:36 PM Revision 91c32ac7 (utis-webapp): updating to spring 3.2.7.RELEASE and downgrading swagger-springmvc to 9.0.0, also changing the way errors are reportes back to the web client
11/13/2014
- 04:23 PM Revision a5e4d895 (cdmlib): minor
- 04:22 PM Revision 44ebd614 (cdmlib-apps): minor
- 04:17 PM Revision e15e7ef6 (cdmlib): improve cache update algorithm
- 03:43 PM Revision 3ccfa7de (cdm-dataportal): Deleting discontinued modules 7.x/modules/dwca_export and 7.x/modules/dwca_export_view the development of this module is continued by the NHM
- 03:12 PM bug #4461 (Closed): Ordering in datasources view fails
- Hi,
when I try to order the datasource view by Servers, the result is often incomplete as you can see in the be...
11/12/2014
- 05:30 PM Revision df989a18 (taxeditor): added recursive loading for collection and maps and also correspoding tests.
- cleanup of code.
- 03:41 PM Revision c8ea97e3 (cdmlib): - fixed possible NPE
- 03:35 PM Revision 686f8a4c (taxeditor): - updated molecular DetailsViews according to requirements
- 03:31 PM Revision 1446141f (cdmlib): - fixed typo with semantic meaning
- 01:35 PM Revision b55c6380 (utis-webapp): fixing issue #1 - NPE in UtisController.search()
- 01:34 PM Revision 978db844 (utis-webapp): updating swagger-springmvc to 9.0.1
- 12:41 PM bug #4458: Advanced Media DetailsView only implemented for ImageFiles
- added AK as he is also involved in the integration of other media types into the CDM
- 09:43 AM bug #4458 (New): Advanced Media DetailsView only implemented for ImageFiles
- The DetailsView for Media (when in advanced mode) only creates ImageFiles as MediaRepresentationParts. This will lead...
- 11:28 AM Revision 5117a754 (cdmlib): - used blank data set for test
- 11:17 AM Revision 6882da59 (cdm-dataportal): changing default of feature block setting 'as_list' from ul to div
- 09:51 AM Revision 03d5f058 (taxeditor): - used ImageFile instead of more generic MediaRepresentationPart when creating the Media (fixes #4402)
- - fixed a typo
- 09:51 AM Revision 0a5d335c (cdmlib): - used ImageFile instead of more generic MediaRepresentationPart when creating the Media (fixes #4402)
- - fixed a typo
- 09:27 AM Revision eecb44d0 (taxeditor): merge from trunk
11/11/2014
- 06:59 PM Revision cd63800b (taxeditor): merge from trunk
- 06:58 PM Revision b44e8184 (taxeditor): added tests for recursive cdm entity loading and updated corresponding code
- 02:11 PM Revision 11c03192 (taxeditor): - moved OriginalLabelData section to 2nd position
- - made text field fill horizontally
- 09:34 AM Revision d0ba58fc (taxeditor): - refactored DerivateViewEditorInput to use UUIDs instead of CDM entities
- - added delete operation to DerivateView (currently only deleting leafs of the derivate tree is allowed)
- 09:33 AM Revision 2554cb27 (cdmlib): - added delete configurator to occurence service
- 09:18 AM Revision 5c58acf0 (cdmlib): - fixed typo
11/10/2014
- 04:58 PM Revision 4ee7a509 (cdm-dataportal): - added toggle option to settings for enabling/disabling "Determined as" information in compressed specimen table
- - some label text changes
- 09:55 AM Revision 9a826147 (taxeditor): fixing problems in bulkeditor and minor
- 09:49 AM Revision 0f8d094a (cdmlib): changes in service layer for fixes in bulg editor and search for misapplied names and common names in editor
11/06/2014
- 12:54 PM Revision f027f0cd (cdmlib): minor
11/05/2014
- 01:01 PM Revision 7932fad4 (taxeditor): - added toolbar buttons for toggling the different insertion modes
- - added menu entry to load pherogram (also possible with shortcut CTRL+O)
- added status bar indicating the current ... - 12:59 PM Revision c47cde98 (taxeditor): - merge-update from trunk
11/04/2014
- 03:57 PM Revision b04e3804 (taxeditor): - merge-update from trunk
- 03:54 PM Revision e9af0bd6 (taxeditor): - fixed possible NPE
- 02:58 PM Revision 25ec2e67 (cdmlib): - provide contig and read information in portal and webservice
- 02:58 PM Revision 2251918f (cdm-dataportal): - provide contig and read information in portal and webservice
- 02:56 PM Revision 59777165 (taxeditor): - used more pepresentative DerivationEventTypes when creating derivates via DerivatView
- 10:41 AM Revision 17d9afae (taxeditor): merge-update from trunk
11/03/2014
- 10:43 AM Revision 0ae57522 (cdm-dataportal): - renamed "Image" column to "Scan"
- 10:30 AM Revision 7d8ef9fa (cdm-dataportal): - showing contig and primer info in compressed specimen table
- 10:29 AM Revision 74a3f355 (cdmlib): - extende DerivateHierarchyDTO to also show contig and primer info
10/30/2014
- 11:44 AM Revision ee086833 (taxeditor)
- 11:43 AM Revision 5ba870c3 (taxeditor): fixing #2547
10/29/2014
- 07:01 PM Revision b25ac0b0 (taxeditor): session object for remoting
- 07:00 PM Revision 403ca5d6 (taxeditor): added code + config for caching mechanism
- 06:56 PM Revision 72be444d (taxeditor): added,
- CdmModelGetMethodCacherTest : for testing the hibernate class mappings get methods caching process
CdmClientCachingTe... - 06:51 PM Revision 24b716c5 (taxeditor): removed unnecessary imports
- 04:17 PM Revision fc0e0269 (taxeditor): new empty db confirming to model 3.4.0
- 03:50 PM Revision 8ee49799 (taxeditor): - fixed class cast exception
- 03:10 PM Revision ea599416 (cdmlib): - removed comma in specimen citation
- 01:18 PM Revision bf052da5 (taxeditor)
- 01:17 PM Revision aa3535e0 (cdmlib)
- 11:39 AM Revision ba11b78e (taxeditor): - added exception throwing to URI assembly in Sequence class
- - handled exception in editor details view
- 11:39 AM Revision 3f9e57cd (cdmlib): - added exception throwing to URI assembly in Sequence class
- - handled exception in editor details view
- 11:38 AM Revision a6b6b197 (taxeditor): - added elevation to section title
- 11:38 AM Revision 29186120 (taxeditor): - applied coding conventions
- 10:11 AM feature request #4452: p2 update problem with nebula compositetable dependency
- Good point. I don't see a mention of the license on the project site http://www.eclipse.org/nebula/downloads.php, but...
- 12:00 AM feature request #4452: p2 update problem with nebula compositetable dependency
- Replying to [[comment1|c.mathew]]:
> The more long-term solution will be to have our own p2 repository with these p... - 09:37 AM Revision 9ca576c2 (taxeditor): - fixed possible SessionException
10/28/2014
- 07:25 PM Revision 217e7cc8 (taxeditor): - adapted derivate hierarchy assembly to cdmlib3.4 changes (TissueSample, DnaSample as one class)
- 07:24 PM Revision 072913b2 (cdmlib): - adapted derivate hierarchy assembly to cdmlib3.4 changes (TissueSample, DnaSample as one class)
- 07:22 PM Revision cc4d4499 (cdm-dataportal): fixed possible NPE and handling of null values
- 07:20 PM Revision cacc2f39 (cdmlib): - extended init test
- 06:14 PM feature request #4452 (In Progress): p2 update problem with nebula compositetable dependency
- changed nebula p2 repository to the one which is archived but stable (retention period of 2 years starting Q32014) - ...
- 05:47 PM feature request #4452 (Closed): p2 update problem with nebula compositetable dependency
- The eclipse nebula compositetable dependency blocks the update of the taxeditor , since the taxeditor update mechanis...
- 05:52 PM Revision 7a46f22e (taxeditor): eu.etaxonomy.taxeditor/pom.xml : reverted addition of nebula widget jars
- pom.xml : changed nebula repository to archived one
eu.etaxonomy.taxeditor/rcp.target : changed composite table jar w... - 03:45 PM Revision 375fee3c (taxeditor): removed version dependency for org.eclipse.nebula.widgets.compositetable
- and added the composite table jar to the p2 update
- 03:27 PM Revision 1fec1343 (cdmlib): - made constructor protected to avoid JavaAssistEnhancementException
- 02:10 PM Revision 39b2e2be (taxeditor): fix #4450
- 02:09 PM Revision 5b62196b (cdmlib): fix #4450
- 02:07 PM Revision 1e4d6638 (cdmlib): Changes for production mode for vaadin
- 09:53 AM Revision 2cddaf32 (taxeditor): added space between beta prefix and version
10/27/2014
- 04:37 PM Revision 0d1e14df (cdmlib): changed startup parameter for vaadin. Only for testing.
- 04:33 PM Revision 79ef938c (taxeditor): Basic implementation for LoadPherogramHandler added. (Imported data is currently not displayed due to currently unimplemented support for adding sequences and data areas during runtime in LibrAlign.)
- 03:53 PM Revision a02b0ad6 (taxeditor): Example in AlignmentEditor now relies on an editable SequenceDataProvider (and contains not more predefined base call alignment edits).
- Minor changes.
- 03:35 PM Revision 64028752 (taxeditor): Comments added to LoadPherogramHandler.
- Pherogram example file paths adjusted again. (This time the other ones are still present as comments.)
- 02:45 PM Revision 26254193 (taxeditor): merge-update from trunk
- 02:45 PM Revision 136543c0 (taxeditor): merge-update from trunk
- 01:48 PM Revision 7c6e83fe (taxeditor): - fixed double exception dialog popup when not connected to data source
- - fixed NPE when starting ABCD import with dirty editors
- 11:50 AM Revision 63b961d3 (taxeditor): - fixed possible NPE when entering DnaQuality data
- 11:38 AM Revision b39ef2c4 (cdmlib): latest changes for Vaadin Editor
- * added in Web.XML production mode
- 11:24 AM Revision 003cd10b (cdmlib-apps)
- 11:21 AM Revision 5970cb82 (cdmlib)
- 11:20 AM Revision 8a5b8f34 (cdmlib)
- 10:22 AM Revision 463e5920 (taxeditor): - implemented missing interface method
- 09:09 AM Revision 2f4fd039 (cdmlib): - added service method deleteDerivateHierarchy()
10/24/2014
10/23/2014
- 01:44 PM Revision 8e681fe5 (cdmlib): remove NOT NULL on OriginalSourceType_AUD.sourceType on existing data #4445
- 01:29 PM Revision cd00ba19 (cdm-server): added change of permissions to target dir and copy script
- added 'set -e' to exit script on failure
- 09:20 AM Revision 84cd76e8 (cdmlib): revert contact URLs #3920, #4444
10/22/2014
- 11:48 PM Revision ea6dd88e (taxeditor): Adjustments to recent changes in LibrAlign.
- 10:57 PM Revision ce09e28c (cdmlib): workaround for Contact.urls to solve #4444 preliminary
- 07:03 PM Revision 08a6ca57 (cdmlib-apps): update bgbm instance updater
- 06:56 PM Revision a3e4322e (cdmlib-apps): add bgbm instance updater
- 06:54 PM Revision 2ca78fa6 (cdmlib): last update to schema updater 34.
- 06:01 PM Revision 164795a7 (cdmlib): removed useless widgetset
- 06:00 PM Revision 8e77cee7 (cdmlib): Vaadin Exception handling and minor changes
- 05:54 PM Revision 4936cc81 (cdmlib): Vaadin Exception handling and minor changes
- 04:51 PM Revision 3e9470c3 (cdmlib): fix uuid as UniqueKey problem
- 03:48 PM Revision 7021f5c7 (cdmlib): reduce size of contact URI due to key length problems
- 03:46 PM Revision 1ce9afb7 (cdm-dataportal): reintegrated campanula drupal branch
- 03:42 PM Revision c132d773 (taxeditor): - added kind of tissue to TissueSampleDetailsView
- 03:36 PM Revision 3d57b99f (taxeditor): - added TODO
- 02:59 PM Revision 48065e68 (taxeditor): reintegrated taxeditor-3.4 branch into trunk
- 02:42 PM Revision ded5bf57 (taxeditor): merge-update from trunk
- 01:57 PM Revision fe371b32 (taxeditor): - generalized sample designation GUI elements
- - added sample designation to TissueSample details view
- added some more parameters to TissueSample details view - 01:28 AM Revision 9f86c47d (cdmlib): update fullCoverageDataGenerator
- 12:49 AM Revision fed9df82 (cdm-server): update cdmserver to v3.4.0
- 12:35 AM Revision c0374b78 (cdmlib): latest Datasource version
- 12:31 AM Revision c6d8699a (cdmlib): add WebPageDefaultCacheStrategyTest
- 12:19 AM Revision 538c276e (cdmlib-apps): merge app-import 3.4 branch into trunk
- 12:12 AM Revision 2c95179f (cdmlib): update remote-WebApp H2 database
10/21/2014
- 11:36 PM Revision 44a8f340 (cdmlib): update cdmTest version for remoteWebApp
- 10:20 PM Revision a8446552 (cdmlib-apps): last changes euroMed activator
- 10:17 PM Revision a50d65cd (cdmlib): H2 update script fixes in trunk
- 10:11 PM Revision f0a2c5b4 (cdmlib): merge cdmlib-3.4 branch into trunk
- 10:09 PM Revision a55facb7 (cdmlib): fixes for H2 update script
- 03:57 PM Revision c41dd1a0 (cdmlib): integrate latest changes to branche 3.4
- 03:43 PM Revision 43cf33f2 (cdmlib): add full data call
- 03:42 PM Revision 4917123f (cdmlib): latest fullCoverDaGet
- 03:36 PM Revision da3a032b (cdmlib): - removed accidentally committed class
- 03:33 PM Revision 4da4c805 (cdmlib): remove view from fullCoveragedatagen
- 03:32 PM Revision b1fe1297 (cdmlib): - merge-update from trunk
- 03:31 PM Revision 5340df7b (cdmlib): latest version for Datasource
- 03:29 PM Revision 2a19791f (cdmlib): merge-update from trunk
- 03:24 PM Revision 16552d3b (cdmlib): new convenience method
- 02:58 PM Revision 56e15498 (cdmlib): merge-update from trunk
- 02:56 PM Revision cd84b7b4 (cdmlib): - no change (just updated "last edited" for svn)
- 02:53 PM Revision b3a52538 (cdmlib): merge-update from trunk
- 02:50 PM Revision 2c6ae9a6 (cdmlib): merge-update from trunk
- 02:45 PM Revision 65d106f8 (taxeditor): merge-update from trunk
- 02:44 PM Revision 36a8fc69 (taxeditor): - added empty "Delete Derivate" functionality to DerivateView
- 02:16 PM Revision cbc4c965 (cdmlib): final version of FullCoverageDataGenerator for v3.3
- 02:15 PM Revision a9754621 (cdmlib): fix NOMECLATURAL_REFERENCES in Statistics controller
- 02:04 PM Revision d5feaa2f (cdmlib): changed scope of main view
- 01:59 PM Revision 1c6e6c0e (cdmlib): fix init problem for DnaSample
- 01:59 PM Revision 4f713719 (cdmlib): updated widgetset version number. increased Vaadin version number too.
- 01:47 PM Revision 7f455261 (cdmlib): minor
- 01:44 PM Revision 24ad4a62 (taxeditor): - removed unused package
- 01:21 PM Revision 627cb878 (cdmlib): bugfix for clone and setDnaSample
- 01:15 PM Revision 42b8a25b (cdmlib): remove debug
- 01:15 PM Revision 8bd8009e (cdmlib): new NewInstance for TermVocabulary
- 01:12 PM Revision 856d993b (cdmlib): latest updates to FullCoverageDataGenerator
- 12:48 PM Revision aec87377 (cdmlib): - adapted to cdm3.4 changes
- 12:42 PM Revision cc1af289 (cdmlib): merge-update from trunk
- 12:42 PM Revision 69daa919 (taxeditor): merge-update from trunk
- 12:41 PM Revision b85b96a3 (taxeditor): - extended DnaQuality details view
- - refactored DateElement creation
- 11:52 AM Revision 6f9c3480 (cdmlib): add a bit more bidirectionality to DnaSample/Sequence
- 09:43 AM Revision e577390b (taxeditor): - added more paramaters to DnaQuality details view
- - fixed ordering of sample designations for DnaSamples (first is current)
- 07:51 AM Revision 4dc84326 (cdmlib): return nameRelationship
- 01:32 AM Revision 676c29f4 (cdmlib): preliminary remove data generator
- 01:23 AM Revision 8e7f173a (cdmlib): preliminary remove data generator
- 01:21 AM Revision 0773df9a (cdmlib): improve FullCoverageDataGenerator
- 12:25 AM Revision eb2b587d (cdmlib): cascade SingleRead.materialOrMethod
10/20/2014
- 09:14 PM Revision 3615c348 (cdmlib): allow saving FullDataGenerator data through API (preliminary)
- 08:51 PM Revision 32398407 (cdmlib): minor
- 08:21 PM Revision e1030562 (cdmlib): add validation framework classes #4439
- 08:14 PM Revision b03413be (cdmlib): add purificationMethod to update script
- 08:02 PM Revision 323da513 (cdmlib): further changes to DnaQuality #4434 and update script for ValidationFramework alpha version
- 06:04 PM Revision a37014ed (cdmlib): fix methods for new TableCreator constructor
- 06:04 PM Revision 3b38a94c (cdmlib): minor
- 05:12 PM Revision ecb0c514 (taxeditor): - added some detail elements
- 05:12 PM Revision c9dd597d (taxeditor): - refresh after updating datasource (fixes #2117)
- 05:11 PM Revision 1b25243d (taxeditor): - adapted to cdmlib changes
- 04:36 PM Revision 30df2c08 (cdmlib): latest changes for VaadinPrototype
- * paged tables
* lazy loaded container
* crud functionality for distribution status
* classification selection view
*... - 04:35 PM Revision 49876830 (cdmlib): uuid length
- 04:05 PM Revision 1fc56aab (cdmlib): minor
- 03:35 PM Revision b998a5a0 (cdmlib): make primer.sequence a SequenceString #4139
- 02:23 PM Revision 9b4b53df (cdmlib): - extended test
- 02:17 PM Revision 8678bd8d (cdmlib): add indexed adder and remove method to identifier list
- 02:15 PM Revision 42c84aab (cdmlib): - fixed service method and extended test
- 01:50 PM Revision 2ab58273 (taxeditor): deleted project from trunk to work on branch
- 01:19 PM Revision 5ceb94de (taxeditor): merge-update from trunk
- 01:18 PM Revision cd708c2b (cdmlib): merge-update from trunk
- 01:11 PM Revision 21fabb3d (taxeditor): Creating remoting branch of taxeditor (trunk)
- 01:08 PM Revision 83c8d57f (taxeditor): adding license text to feature projects since these were removed from feature.xml
- 01:05 PM Revision b03c4d33 (taxeditor): added polytomous key tests and initial developments on caching
- 12:59 PM Revision 531e1ed6 (taxeditor): updated CDMServer and corresponding test files to use dbunit datasets with the possibility
- of targetting a managed as well as external instance of the CDMServer
- 12:57 PM Revision 8256592e (taxeditor): added required jars and setup svn:ignore property using .svnignore
- 10:47 AM Revision e4428955 (taxeditor): - added sampleDesignation section to DnaSample details view (#4237)
- - added sampleDesignation to DerivateLabelProvider
- 10:45 AM Revision 73ec8b01 (taxeditor): - re-enabled specimen type chooser
- 10:21 AM Revision d1b51913 (taxeditor): - adapted method calls to cdmlib changes
10/18/2014
- 04:27 AM Revision f6d5e560 (cdmlib): add i18n description for Classification. #4428
- 03:58 AM Revision 7b23180d (cdmlib): Geo and time scope for Classifications #3699
- 03:51 AM Revision f539d24c (cdmlib): Geo and time scope for Classifications #3699
- 03:14 AM Revision 0a345e59 (cdmlib): first implementation for DnaQuality #4434
- 01:01 AM feature request #3685 (In Progress): Open tissue sample and molecular issues
- 12:30 AM Revision 9af6d56b (cdmlib): Make Contact URL an url #3920
10/17/2014
- 11:45 PM Revision 49e8fcf3 (cdmlib): Make Contact URL an url #3920
- 11:04 PM Revision 45732b87 (cdmlib): remove View class #4316 and update script for authorTeam rename #4432
- 10:31 PM Revision 6dc32b87 (cdmlib): rename Reference.authorTeam -> authorship #4432
- 10:00 PM Revision 9fda2b40 (cdmlib): rename Reference.authorTeam -> authorship #4432
- 09:51 PM Revision a15e89cb (cdmlib): minor
- 09:50 PM Revision 899e8a87 (cdmlib): clean up Endnote import
- 09:31 PM Revision ec1059aa (cdmlib): adapt tests to missing Reference.series #4293 and not null constraint for test database ddl #4382
- 09:03 PM Revision e1381d55 (cdmlib): added NotNull constraints to User.username, Group.name, GrantedAuthorityImpl.authority #4382
- 08:57 PM feature request #4311 (New): Improve person representation in CDM
- 08:56 PM Revision 1ddb7fb8 (cdmlib): rename Reference.authorTeam -> authorship #4432
- 08:53 PM Revision f89911d1 (cdmlib): rename Reference.authorTeam -> authorship #4432
- 08:15 PM Revision e3d74b74 (cdmlib): adapt tests to missing Reference.series #4293
- 08:10 PM Revision aea80021 (cdmlib): minor
- 08:06 PM Revision 7e045089 (cdmlib): remove series from Reference #4293
- 07:33 PM Revision 20ff76b1 (cdmlib): add IdentifierType Vocabulary
- 06:49 PM Revision 54e8de3a (cdmlib): fix update script to run with MySQL, add TermType IdentifierType, add List index on identifiers
- 04:13 PM Revision 91f7a0de (cdmlib): adapt tests to 3.4
- 02:11 PM Revision 8385fc8d (cdmlib): merge trunk for pom.xml
- 12:41 PM Revision f9ef6d75 (cdmlib): minor
- 12:40 PM Revision 6e279e47 (cdmlib): latest update script update
- 12:38 PM Revision c2f9bfc4 (cdmlib): make Identifiers a List
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