Project

General

Profile

Activity

From 03/19/2014 to 04/17/2014

04/17/2014

04:48 PM Revision 92131df0 (cdmlib): Latest updates to Specimen Excel import
Andreas Müller
04:11 PM Revision 19b9d902 (cdmlib): removed bug in unit test for dao.saveValidationResult()
Ayco Hollemann
04:06 PM Revision 30e63d0b (cdmlib): removed bug in unit test for dao.saveValidationResult()
Ayco Hollemann
04:06 PM Revision 8d91be96 (cdmlib): removed bug in unit test for dao.saveValidationResult()
Ayco Hollemann
03:56 PM Revision ec78a136 (cdmlib-apps): minor
Andreas Müller
03:56 PM Revision e7419058 (cdmlib): handle ignore better
Andreas Müller
03:55 PM Revision a2b4d1c4 (cdmlib): determination abbrev
Andreas Müller
11:57 AM Revision 0e5f34d6 (cdmlib-apps): update eflora, pesi, imports version number
Andreas Müller
11:52 AM Revision 815caf44 (cdmlib-apps): update version in app parent pom
Andreas Müller
10:33 AM Revision 38887a67 (cdmlib): Documentation for Webservice
Alexander Oppermann

04/16/2014

05:26 PM Revision 7d512cd5 (taxeditor): Snapshot branch for version 3.3.4-SNAPSHOT
edit-jenkins
05:26 PM Revision 9b2181b1 (taxeditor): Updated version in config files to 3.3.4-SNAPSHOT
edit-jenkins
05:21 PM Revision 89fe0b43 (taxeditor): Updated version in config files to 3.3.3
edit-jenkins
04:35 PM Revision a924cbf5 (cdmlib): added unit test for dao.saveValidationResult()
Ayco Hollemann
04:34 PM Revision 30d6d6e6 (cdmlib): added unit test for dao.saveValidationResult()
Ayco Hollemann
02:40 PM Revision aaf28bd4 (cdm-server): [maven-release-plugin] prepare for next development iteration
edit-jenkins
02:40 PM Revision 22d2866c (cdm-server): [maven-release-plugin] prepare release cdm-server-3.3.3
edit-jenkins
02:33 PM Revision d039b37f (cdmlib): Created a hibernate UserType implementation for the Severity class
Ayco Hollemann
02:33 PM Revision 845f0230 (cdmlib): Created a hibernate UserType implementation for the Severity class
Ayco Hollemann
02:22 PM Revision a622f421 (cdmlib): [maven-release-plugin] prepare for next development iteration
edit-jenkins
02:22 PM Revision 18d07ff9 (cdmlib): [maven-release-plugin] prepare release cdmlib-parent-3.3.3
edit-jenkins

04/15/2014

12:26 PM Revision 71e61a9c (cdmlib): Radically modified the Severity class because it turns out that within the context of javax.validation it cannot actual be an enum
Ayco Hollemann
12:25 PM Revision 6741ef60 (cdmlib): Radically modified the Severity class because it turns out that within the context of javax.validation it cannot actual be an enum
Ayco Hollemann
11:25 AM Revision a117752c (cdmlib): removed ignore
Cherian Mathew
10:20 AM Revision 4d1c9e9b (taxeditor): - renamed TextWithLabelElement to avoid import/name conflicts (ma be renamed if we fully refactor using MVC pattern)
Patrick Plitzner
10:19 AM Revision b2b32b0f (cdmlib): add getEntitiesViolatingConstraint() to dao
Ayco Hollemann
10:19 AM Revision 57ead930 (cdmlib): add getEntitiesViolatingConstraint() to dao
Ayco Hollemann
10:18 AM Revision 6e686db8 (taxeditor): - removed unused PropertyTester
Patrick Plitzner
10:14 AM Revision 50a05434 (taxeditor): - added interfaces and classes for MVC pattern
- implemented/adapted MVC pattern for TextWithLabelElement and EnumTermCombo element Patrick Plitzner
09:31 AM Revision 9ccc4d83 (cdmlib): Added more methods to validation dao and created unit tests for them. Also added DDL for error tables
Ayco Hollemann
09:30 AM Revision 25727213 (cdmlib): Renamed some methods
Ayco Hollemann
09:19 AM Revision 3865531d (taxeditor): - fixed FactualData view to show data for selection of DerivateView
- renamed util method Patrick Plitzner

04/14/2014

07:14 PM Revision c42da44f (cdmlib-apps): last version ATImportActivator
Andreas Müller
07:13 PM Revision f027e071 (cdmlib-apps): first version of MorphologyImport AlgaTerra
Andreas Müller
11:01 AM Revision 4b56a4a0 (cdmlib): minor
Andreas Müller

04/11/2014

05:37 PM Revision 560c3ab4 (taxeditor): Snapshot branch for version 3.3.3-SNAPSHOT
edit-jenkins
05:37 PM Revision 2a5ff173 (taxeditor): Updated version in config files to 3.3.3-SNAPSHOT
edit-jenkins
05:30 PM Revision f4e55c0a (taxeditor): Updated version in config files to 3.3.2
edit-jenkins
05:15 PM Revision 3013c218 (utis-core): added fix for GBIF occurrences api change
Cherian Mathew
03:56 PM Revision e621c53c (cdmlib): adding context path to url
Cherian Mathew
02:56 PM Revision 911a8140 (cdmlib): Added missing sort to method listTaxonChildNodeOf via comparator
Alexander Oppermann

04/10/2014

04:58 PM Revision 9f12d209 (cdm-server): [maven-release-plugin] prepare for next development iteration
edit-jenkins
04:58 PM Revision ebcfcd7a (cdm-server): [maven-release-plugin] prepare release cdm-server-3.3.2
edit-jenkins
04:48 PM Revision 3112b1bf (cdmlib-apps): adapting poms to new version
Andreas Müller
04:47 PM Revision 04eea9e7 (cdmlib-apps)
Andreas Müller
04:20 PM Revision da06a1db (cdmlib): ignore tests for release
Cherian Mathew
04:19 PM Revision be56b4cc (cdmlib): *added Test for service method: getTaxonOfAcceptedTaxaByClassification and countTaxonOfAcceptedTaxaByClassification
*fixed SQL Statement so it works with H2 DB Alexander Oppermann
03:51 PM Revision ab60ea88 (cdmlib): [maven-release-plugin] prepare for next development iteration
edit-jenkins
03:51 PM Revision 48bf6bcf (cdmlib): [maven-release-plugin] prepare release cdmlib-parent-3.3.2
edit-jenkins
02:51 PM Revision bd47b74d (cdmlib): *added service layer method: countAllNodesForClassification
*improved performance CSVDemoExport Alexander Oppermann
02:17 PM Revision f160e5a4 (cdmlib): log childIndex is null
Andreas Müller
02:16 PM Revision 6bf0ea8f (cdmlib): fix logging for taxa used multiple times in addParentChild
Andreas Müller
11:26 AM Revision c50bbf8d (cdmlib): *Update of the CSVExport WS.
*fixed memory leak
*new service method to pull list of TaxonNode according to a given classification
Alexander Oppermann
10:22 AM feature request #4182: use elasticsearch as search engine [DISCUSS]
I think this is a really good idea. I have been doing some research on this, from the point of of the Data Quality In... Cherian Mathew
08:15 AM feature request #4182 (New): use elasticsearch as search engine [DISCUSS]

**Links:**
* [elasticsearch](http://www.elasticsearch.org/)
* on how to let hibernate send modified entit...
Andreas Kohlbecker
08:38 AM Revision 1252b6ea (taxeditor): - commented "Original Label Data" text field because it is not yet used in trunk
Patrick Plitzner

04/09/2014

09:59 PM Revision 088a7028 (cdm-dataportal): removing ugly empty line in classification chooser and highlighting the default classification in bold letters
Andreas Kohlbecker
09:16 PM Revision 24058570 (cdm-dataportal): out-commenting option to slect name_relationships_to_show in settings
Andreas Kohlbecker
05:35 PM Revision ae80e073 (cdmlib): new doubtful relationships for BM import
Andreas Müller
05:29 PM Revision c17f2650 (cdmlib): handle inverse and doubtful taxon relations in Berlin Model import
Andreas Müller
05:29 PM Revision e6dcb602 (cdmlib-apps): handle inverse and doubtful taxon relations in Berlin Model import
Andreas Müller
05:18 PM Revision c7f3dd78 (cdmlib-apps): new destination
Andreas Müller
04:36 PM Revision 3ab028dc (cdmlib): change log4j properties
Andreas Müller
04:27 PM Revision 805ada2e (cdmlib): fix GeoServiceTest
Andreas Müller
04:27 PM Revision 10e96c9d (cdmlib): DatabaseServiceHibernateImpl : added important fixme
CdmPersistentDataSource : clean up
CdmPersistentXMLSource : added context path enum for remoting
CdmApplicationUtils ...
Cherian Mathew
04:23 PM Revision 98663175 (taxeditor): CdmStore : no longer need to set configuration in hibernate classes here
CdmStoreConnector : new method to retrieve configuration based on cdm source type Cherian Mathew
04:21 PM Revision 100e8fc1 (cdmlib): Added Severity Payload object; moved CRUDEvenetType enum to cdmlib-model
Ayco Hollemann
04:21 PM Revision d3fdb808 (cdmlib): Added Severity Payload object; moved CRUDEvenetType enum to cdmlib-model
Ayco Hollemann
04:19 PM Revision f98139df (taxeditor): CdmPersistentRemoteSource : implemented all source methods including save and delete
CdmRemoteSourceException : new exception to deal with cdm source errors
CdmRemoteSourceBase : added default constructor
Cherian Mathew
04:16 PM Revision aaa98ab4 (taxeditor): CdmApplicationRemoteController : directly loads CdmApplicationRemoteConfiguration bean and sets configuration in hibernate classes
CdmApplicationRemoteConfiguration : no longer need the bean name hack due to update in CdmApplicationRemoteController Cherian Mathew
04:15 PM Revision 3ffe0a32 (taxeditor): isRemoting is no longer based on a bean in the application context, but
the type of cdm source Cherian Mathew
04:13 PM Revision da2857b1 (taxeditor): isRemoting is no longer based on a bean in the application context, but
the type of cdm source Cherian Mathew
04:09 PM Revision 388959b4 (taxeditor): cdm.datasources.xml : added test sources settings file
CdmRemoteSourceTest, RemoteLazyLoadingTest : updated tests
HttpInvokerServicesTest, CdmPersistentRemoteSourceTest, Cd...
Cherian Mathew
02:43 PM Revision f29ccc71 (cdmlib): fix country mapping
Andreas Müller
11:15 AM task #3348: should annotations always be returned for cdm instances? [DISCUSS]
Replying to [[comment6|a.mueller]]:
> Did you load the full Annotation or only relevant attributes?
as the annotati...
Andreas Kohlbecker
11:10 AM task #3348: should annotations always be returned for cdm instances? [DISCUSS]
loading annotations with distributions committed as r20576
Andreas Kohlbecker
11:07 AM task #3348: should annotations always be returned for cdm instances? [DISCUSS]
Did you load the full Annotation or only relevant attributes?
Andreas Müller
11:04 AM task #3348: should annotations always be returned for cdm instances? [DISCUSS]
performance test with and without initialization of annotations:
1. no annotations, Time per request: 837.971 [[ms]...
Andreas Kohlbecker
09:42 AM task #3348: should annotations always be returned for cdm instances? [DISCUSS]
the DescriptionPortalListController always returns the annotations for the requests to @ portal/descriptionElement/by... Andreas Kohlbecker
11:09 AM Revision 5936efd6 (cdmlib): loading annotations with distribution elements - #3348 (should annotations always be returned for cdm instances? [DISCUSS])
Andreas Kohlbecker
10:15 AM Revision b59b87cd (taxeditor): - fixed link to online svn repo
Patrick Plitzner

04/08/2014

06:03 PM Revision ef833cbf (cdm-dataportal): adding date to fix test
Andreas Kohlbecker
05:05 PM Revision ff4486f5 (cdmlib): reverting r20536 , related to #4174 (simple search for Micrasterias* causes LazyInitializationException)
Andreas Kohlbecker
05:05 PM Revision 629247b4 (cdmlib): fixing #4174 (simple search for Micrasterias* causes LazyInitializationException)
Andreas Kohlbecker
02:24 PM Revision 0ac7b8a4 (cdmlib): add service to get all nodes of a classification
Katja Luther
01:54 PM Revision 0c2290e9 (cdmlib-apps): add original media to AT import
Andreas Müller
12:44 PM Revision f379b50b (cdmlib): remove isFigure from getImageMedia
Andreas Müller
12:44 PM Revision 3ea56d54 (cdmlib-apps): remove isFigure from getImageMedia
Andreas Müller
08:53 AM Revision 94a8af64 (taxeditor): - added memento restore mechanism to DerivateView (partially)
Patrick Plitzner
08:53 AM Revision 49397612 (taxeditor): - set default derivate typ filter to "unknown"
Patrick Plitzner
08:52 AM Revision 9d127efb (taxeditor): - javadoc
Patrick Plitzner

04/07/2014

05:26 PM Revision adc71b4e (cdm-dataportal): more tests of type designations
Andreas Kohlbecker
05:06 PM Revision c6b99640 (cdmlib): fixing TYPEDESIGNATION_INIT_STRATEGY to avoid LIEs
Andreas Kohlbecker
05:06 PM Revision d326a6c3 (cdmlib): fixing NAMERELATIONSHIP_INIT_STRATEGY to avoid LIEs
Andreas Kohlbecker
04:17 PM Revision 7d93a128 (cdmlib): fixing #4176 (Dataportal shows wrong symbols for non-symmetric taxon relationships)
Andreas Kohlbecker
02:53 PM task #4177: display of name relationships in synonymy broken
Hallo,
ich hatte mich schon gewundert, aber meines Wissens wurden die angesprochenen Namensrelationen, abgesehen v...
Andreas Kohlbecker
02:52 PM task #4177: display of name relationships in synonymy broken
Liebe alle,
...
Betrifft: „ alle Realtionstypen wie TreatedAsLaterHomonym, LaterHomonym und BlockingName.
Andere...
Andreas Kohlbecker
02:44 PM task #4177: display of name relationships in synonymy broken
Sind Basionyme nicht aus den homotypischen Gruppen + Autorenbezeichnungen + Jahreszahlen weitgehend selbsterklärend?
...
Andreas Kohlbecker
02:44 PM task #4177: display of name relationships in synonymy broken
Hallo zusammen,
heute ist mir aufgefallen dass die Darstellung von Namensrelationen im Portal kaputt ist.
Hom...
Andreas Kohlbecker
02:43 PM task #4177 (Closed): display of name relationships in synonymy broken
the old way to display name relationships was broken. This way of displaying name relationships was anyway inappropri... Andreas Kohlbecker
02:37 PM Revision 8d0fe343 (cdm-dataportal): removing old obsolete code for rendering name relationships
Andreas Kohlbecker
02:37 PM Revision 51b04faf (cdm-dataportal): uncluttering and harmonizing rendering of homonyms
Andreas Kohlbecker
02:37 PM Revision 8dfe695c (cdm-dataportal): fomrating option for partial and periods of date time
Andreas Kohlbecker
02:36 PM Revision fdae7858 (cdm-dataportal): final version of tests for homonyms
Andreas Kohlbecker
02:36 PM Revision fe2edf33 (cdm-dataportal): fomrating option for partial and periods of date time
Andreas Kohlbecker
02:36 PM Revision 34768da4 (cdm-dataportal): homonym tests
Andreas Kohlbecker
02:36 PM Revision bf152ad4 (cdm-dataportal): testing more homonyms
Andreas Kohlbecker
02:36 PM Revision 899922d7 (cdm-dataportal): using UUID instead of term representations
Andreas Kohlbecker
02:36 PM Revision ffa2613a (cdm-dataportal): test for homonyms
Andreas Kohlbecker
02:13 PM Revision c1f123ee (cdmlib): Refined unit testing for EntityValidationTask and ValidationExecutor
Ayco Hollemann
01:12 PM Revision bf5e49cd (cdmlib-apps): minor
Andreas Müller
01:11 PM Revision d57f7634 (taxeditor): - refresh view instead of setting the editor input
Patrick Plitzner
11:43 AM Revision b8c2e7c6 (taxeditor): - cleaned DerivateView context menu code and classes
Patrick Plitzner
11:42 AM Revision 8f0f3832 (taxeditor): - partially added handling of input fields
Patrick Plitzner
10:47 AM Revision af99988d (cdmlib): commiting merges
Ayco Hollemann
09:07 AM Revision dbab6858 (cdmlib): Added some more tests and Dommy objects to run the tests with
Ayco Hollemann

04/04/2014

06:09 PM Revision 0cceec9e (taxeditor): added new remote package
Cherian Mathew
05:42 PM Revision d0fbe90d (taxeditor): comments and javadoc
Cherian Mathew
05:38 PM Revision 8a45b292 (cdmlib): added comments / javadoc
Cherian Mathew
12:30 PM Revision 0da0f37b (cdmlib): fixing bug in NameServiceImpl (toNameRelations never could be listed) #4175 (some name relations (basionym) missing)
Andreas Kohlbecker
12:25 PM Revision 5f9bff8b (cdmlib): adding temprary workaround for implementing remote controller
Cherian Mathew
11:42 AM Revision d3855867 (taxeditor): removed repeated call to get all cdm sources
Cherian Mathew
11:41 AM Revision 9bd84319 (taxeditor): updating to align with refactored cdm source classes / interfaces
Cherian Mathew
11:28 AM Revision 98754a9b (taxeditor): Adding CDM Remote Source set of classes to allow editor to connect to a remote cdmserver
Cherian Mathew
11:27 AM Revision 0d17eac3 (taxeditor): CdmApplicationRemoteConfiguration : removed spring bean name hack, since we now have a new controller
CdmApplicationRemoteController : new Controller class to handle remoting
AbstractLazyInitializer / AbstractPersistent...
Cherian Mathew
11:23 AM Revision 53a514ed (cdmlib): extending the title and name cache auto initializer by relationsFromThisName - #4174 (simple search for Micrasterias* causes LazyInitializationException)
Andreas Kohlbecker
11:23 AM Revision 0e749c17 (cdmlib): logging json serialization
Andreas Kohlbecker
10:21 AM Revision 2d427fc0 (cdmlib): TestDatabase / CdmPersistentDataSourceTest / CdmApplicationUtils : updated as per Cdm Source refactoring
ICdmDataSource : moved generic methods to super interface ICdmSource
CdmPersistentDataSource : refactored by spliting...
Cherian Mathew
10:16 AM Revision 37b5850c (cdmlib): added extra checks when parsing jdbc connection url
Cherian Mathew
10:07 AM Revision b8a15850 (cdmlib): moved pretty format from CdmPersistentDataSource to XmlHelp
Cherian Mathew
10:05 AM Revision 704154d3 (cdmlib): New classes / interface to refactor the CdmDataSource object to be more generic to allow for remoting sources
ICdmSource / CdmSource : Base class / interface which represent any CDM Source
ICdmPersistentSource : interface which...
Cherian Mathew
09:58 AM Revision 9ba80ffb (cdmlib): CdmPersistentSourceUtils : new class which contains all functionality to manage the persistent cdm sources config (taken from CdmPersistentDataSource)
CdmSourceException : wraps around exceptions when interacting with the Cdm Sources Cherian Mathew

04/03/2014

06:47 PM Revision 72aa71d5 (cdmlib): fixing #4172 (NPE in ext/edit/mapServiceParameters/taxonOccurrencesFor/{uuid})
Andreas Kohlbecker
03:58 PM Revision b746bb33 (cdmlib): updated IPrimer service settings
Cherian Mathew
03:57 PM Revision f5f02f66 (cdmlib): added methods to get schema version and check if db is empty
house-keeping and adding javadoc Cherian Mathew

04/02/2014

04:08 PM Revision 3345efc0 (taxeditor): - refactored context menu for DerivateView to be programmatic instead of declarative (using plugin.xml)
- fixed icon bug for DerivateSearchView Patrick Plitzner
01:01 PM Revision e668c70d (taxeditor): - only show Copy/Paste context menu for SingleRead/Sequence
Patrick Plitzner
11:37 AM Revision 35a12f14 (taxeditor): - added update() method to DerivateView
- display different icon for SingleReads linked to multiple Sequences Patrick Plitzner
11:35 AM Revision 32f1b240 (cdmlib): - added service method to retrieve a map of SingleReads and their "hosting" Sequences
Patrick Plitzner
09:55 AM Revision f9701c48 (taxeditor): - added util method to get the TreeNode out of a selection
Patrick Plitzner

04/01/2014

06:12 PM Revision 1abe3c5d (cdm-server): bugfix for contextPathPrefix config in /etc/default/cdmserver
Andreas Kohlbecker
05:25 PM Revision 4b4ae204 (cdm-dataportal): post cdm uml 3.3 fix and a kludgy workaround
Andreas Kohlbecker
05:22 PM Revision 68c83855 (cdmlib): fixing initstrategy for #3182 (roteliste: categorical data does not show up)
Andreas Kohlbecker
05:14 PM Revision e425aaf7 (taxeditor): - added Copy/Paste for SingleRead->Sequence to DerivateView
- copying actually just creates a link Patrick Plitzner
02:16 PM Revision 8b34c942 (cdm-server): little bugfix and contextPathPrefix configurable in /etc/default/cdmserver
Andreas Kohlbecker
01:59 PM Revision 6b5d6452 (cdm-server): cdmserver instances can have contextpath prefix
Andreas Kohlbecker
01:58 PM Revision 8dddaadb (cdm-server): minor
Andreas Kohlbecker
10:03 AM Revision 71d89d46 (taxeditor): - fixed user message
Patrick Plitzner
09:44 AM Revision 8942ee00 (taxeditor): - added gel photo detail element to Amplification wizard
Patrick Plitzner
08:51 AM Revision 6b06a799 (taxeditor): - removed Amplification as a TreeNode from the DerivateView
- added Amplification to DetailsView of SingleRead as an EntitySelectionElement Patrick Plitzner
08:50 AM Revision 13d17320 (cdmlib): - added two NewInstance() methods to Amplification
- added getUuidAndDescriptions to IAmplificationService and DAO Patrick Plitzner
08:49 AM Revision a9d0fdf8 (taxeditor): - fixed javadoc
Patrick Plitzner

03/31/2014

02:19 PM Revision e6a339fa (taxeditor): - organize imports for new molecular services
Patrick Plitzner
02:19 PM Revision ddad535f (taxeditor): - fix cdmlib version number in .classpath (why does maven not generate this anymore?)
- added "molecular" package to exported packages
- organize imports for new molecular services
Patrick Plitzner
12:25 PM Revision 8640593e (cdmlib): add tests for treeIndex and deletion of nodes
Katja Luther
11:52 AM Revision f5d25c32 (cdmlib): - bundled services for molecular data in one package
- added more tests Patrick Plitzner
10:25 AM Revision 4bbe7b5a (cdmlib): Generate CSV file from pojo
Alexander Oppermann
10:24 AM Revision 99d23561 (cdmlib): Generate CSV file from pojo
Alexander Oppermann
10:10 AM Revision c5bafc99 (taxeditor): - used "move derivate" methods of service layer
- added java doc Patrick Plitzner
10:08 AM Revision 92b43465 (cdmlib): - added IAmplificationService and ISequenceService
- added service methods to move derivates from one to another
- added test for move method
Patrick Plitzner

03/29/2014

09:50 PM Revision ba84f3fd (cdmlib): performance improvement for listChildNodes of a taxon
Andreas Kohlbecker
11:38 AM Revision 52d9339a (cdmlib-apps): Bug logging for some AT import bugs
Andreas Müller
12:39 AM Revision 6e3976df (cdmlib-apps): update images handling for AlgaTerra
Andreas Müller
12:25 AM Revision ee0f082d (cdmlib-apps): voucher fix
Andreas Müller
12:22 AM Revision 39067586 (cdmlib-apps): new AlgaTerra Media URLs
Andreas Müller

03/28/2014

06:39 PM Revision 601a2066 (cdmlib): fixing #4168 (performance problem with DescriptionListPortalController.getDescriptionElementsForTaxon())
Andreas Kohlbecker
06:01 PM Revision 2f6ceae0 (taxeditor): Snapshot branch for version 3.3.2-SNAPSHOT
edit-jenkins
06:01 PM Revision ba88761a (taxeditor): Updated version in config files to 3.3.2-SNAPSHOT
edit-jenkins
05:28 PM Revision d3e06bb1 (taxeditor): Updated version in config files to 3.3.1
edit-jenkins
11:11 AM feature request #3746: Implement time period scope for description elements in TaxEditor
no release 3.3.1 of the taxeditor so I am moving all tickets to the next milestone 3.3.2
Andreas Kohlbecker
11:11 AM bug #3737: Protected caches for taxa and names behave inconsistent
no release 3.3.1 of the taxeditor so I am moving all tickets to the next milestone 3.3.2
Andreas Kohlbecker
11:11 AM bug #3732: adapt DerivedUnitBaseDetailElement and PreservationMethodMenuPreferences to cdm model changes
no release 3.3.1 of the taxeditor so I am moving all tickets to the next milestone 3.3.2
Andreas Kohlbecker
11:11 AM feature request #3630: Taxeditor should add mimetype of mediaRepresentations automatically
no release 3.3.1 of the taxeditor so I am moving all tickets to the next milestone 3.3.2
Andreas Kohlbecker
11:11 AM task #3603: Remove creation of dummy DefinedTerm when creating new Term related entities
no release 3.3.1 of the taxeditor so I am moving all tickets to the next milestone 3.3.2
Andreas Kohlbecker
11:11 AM feature request #3573: Improve EDITOR import UI configuration panel
no release 3.3.1 of the taxeditor so I am moving all tickets to the next milestone 3.3.2
Andreas Kohlbecker
11:11 AM bug #3536: Incorrect last version documentation for Editor
no release 3.3.1 of the taxeditor so I am moving all tickets to the next milestone 3.3.2
Andreas Kohlbecker
11:11 AM feature request #3337: Correct multiple occurrences of basionym within a homotypic group
no release 3.3.1 of the taxeditor so I am moving all tickets to the next milestone 3.3.2
Andreas Kohlbecker
11:11 AM bug #2957: running maven site:site for Taxonomic Editor fails
no release 3.3.1 of the taxeditor so I am moving all tickets to the next milestone 3.3.2
Andreas Kohlbecker
10:55 AM Revision 5bd5c561 (cdm-server): [maven-release-plugin] prepare for next development iteration
edit-jenkins
10:55 AM Revision 6cb9f703 (cdm-server): [maven-release-plugin] prepare release cdm-server-3.3.1
edit-jenkins
10:52 AM Revision 266a897d (cdm-server): making maven-war plugin compliant to java 1.7 and adding a plugin which could fix problems with maven3 related to the waggon transport for ssh which is failing in maven 3
Andreas Kohlbecker
10:50 AM Revision 8c4ee935 (cdmlib-apps): update cdmapps poms
Andreas Müller
10:45 AM Revision 5954f04a (cdmlib-apps): handle NPE in DNAImport
Andreas Müller
09:53 AM Revision d6b8698e (cdmlib): [maven-release-plugin] prepare for next development iteration
edit-jenkins
09:53 AM Revision e6fbb601 (cdmlib): [maven-release-plugin] prepare release cdmlib-parent-3.3.1
edit-jenkins
01:10 AM Revision 9511e57d (cdmlib-apps): change AlgaTerra preview
Andreas Müller

03/27/2014

03:27 PM Revision 9edf2348 (cdmlib): debug collection and institution for excel import
Patricia Kelbert
03:26 PM Revision 0a00d1bf (cdmlib-apps): debug collection and institution for excel import
Patricia Kelbert
02:00 PM Revision 5fa985eb (cdm-dataportal): fixing #3567 (Rename all FieldObservations by FieldUnit in data portals)
Andreas Kohlbecker
01:52 PM Revision 06d6b7fa (cdm-dataportal): dataportal part for #3766 (Check if specimenOrObservation.kindOfUnit is shown correctly in data portal)
Andreas Kohlbecker
01:52 PM Revision ac8bfc49 (cdm-dataportal): documentation
Andreas Kohlbecker
01:51 PM Revision 5624aa7e (cdmlib): cdmlib part for #3766 (Check if specimenOrObservation.kindOfUnit is shown correctly in data portal)
Andreas Kohlbecker
01:34 PM Revision 69e517e3 (cdmlib): adding missing statisticalValues.* to init strategy. fixes #4165 (algaterra: values of specimen descriptions not shown)
Andreas Kohlbecker
01:05 PM Revision acf3a2e7 (cdm-dataportal): dataportal part of #3576 (Adapt CdmServer and Dataportal to new naming of CategoricalData.stateData)
Andreas Kohlbecker
01:05 PM Revision 68ab2885 (cdm-dataportal): avoiding php notice
Andreas Kohlbecker
01:02 PM Revision 8c2d61c7 (cdmlib): cdmlib part of #3576 (Adapt CdmServer and Dataportal to new naming of CategoricalData.stateData)
Andreas Kohlbecker
01:02 PM Revision 04e4f7c3 (cdmlib): lowering log level
Andreas Kohlbecker
01:02 PM Revision 73ee5c85 (cdmlib): renaming protected setter to setStateData, see #2923 (Rename CategoricalData.states collection to stateData)
Andreas Kohlbecker
12:08 PM Revision f16f10f5 (cdmlib): deactivated controller due to urgent release and unfinished business with a serious memory leak
Alexander Oppermann
11:15 AM Revision e22f1707 (cdm-dataportal): relaxing test to avoid frequent failures du to #4166 (Map legend causes inconsistent spacing below map)
Andreas Kohlbecker
10:05 AM feature request #3444: Don't show empty General Tab
default tab is synonymy for all portals
Andreas Kohlbecker

03/26/2014

05:43 PM Revision 22eb20d7 (cdm-dataportal): fixing #4163 (Taxon Tree - Included Classifications settings can mess up taxon tree settings in user session)
Andreas Kohlbecker
05:25 PM Revision d7588d36 (cdm-dataportal): correctly hiding the classification selector if only one classification is available
Andreas Kohlbecker
03:37 PM Revision 5303e44d (taxeditor): - moved move-logic to occurrence service layer
Patrick Plitzner
03:36 PM Revision 6b04561c (cdmlib): - added moveSequence() and moveDerivate() to occurrence service
Patrick Plitzner
01:35 PM Revision 27cc4c06 (taxeditor): - reset input fields of DerivateSearchView when context stops
Patrick Plitzner
10:14 AM Revision c20264bf (cdmlib): - replaced BasicHttpParams with the default params of DefaultHttpClient (SyncBasicHttpParams) which are already initialised with default values
Patrick Plitzner
09:40 AM Revision ef9c1361 (cdmlib): solving TODO: using AbstractPagerImpl.hasResultsInRange() in dao method
Andreas Kohlbecker
09:40 AM Revision c9b17396 (cdmlib): missing @Override
Andreas Kohlbecker
09:40 AM Revision ab431a5a (cdmlib): contoller methods with return type List should always return a list, even if it is empty
Andreas Kohlbecker
08:39 AM Revision 55c3c2c0 (taxeditor): - added drag'n'drop support for Sequences
- added context listener to DerivateSearchView
- refactored MVC pattern of DerivateSearchView
Patrick Plitzner

03/25/2014

11:44 PM Revision 709cb854 (cdmlib): removing the deprecated method TaxonPortalController.doGetNameTypeDesignations() for #2280 (Stop using portal/taxon//bin/zsh/nameTypeDesignations)
Andreas Kohlbecker
11:41 PM Revision 2b7cd6c2 (cdm-dataportal): solving #2280 (Stop using portal/taxon//bin/zsh/nameTypeDesignations)
Andreas Kohlbecker
05:08 PM Revision 53e5ba00 (taxeditor): - added support for SingleRead drag'n'drop
Patrick Plitzner
05:01 PM Revision 70d6b08b (cdmlib): - added removeSingleRead() method to Amplification
Patrick Plitzner
04:31 PM Revision f70a6bb7 (cdmlib): fixing #4151 (AdvancedBeanInitializer causes problems when initializing taxonnode hierarchies)
Andreas Kohlbecker
02:30 PM Revision d312fb84 (taxeditor): - implemented drag'n'drop support for SpecimenOrObservationBase in Derivate View
Patrick Plitzner
09:35 AM Revision 35e7b311 (taxeditor): - minor
Patrick Plitzner

03/24/2014

04:10 PM Revision e09548fb (taxeditor): - minor enhancement
Patrick Plitzner
03:49 PM Revision 96abdcac (taxeditor): first branch for matus kempa
Andreas Kohlbecker
03:48 PM Revision 92fe4d77 (cdmlib): first branch for matus kempa
Andreas Kohlbecker
02:52 PM feature request #4155 (Closed): Implement handler (IHandler) to trigger recursive setting of the publish bit on a taxon subtree
see http://wiki.eclipse.org/Platform_Command_Framework#Executing_a_command_with_parameters
1. the handler will b...
Andreas Kohlbecker
02:24 PM Revision 0f8371fb (taxeditor): - added timeout to internet availability check
Patrick Plitzner
02:23 PM Revision 6d417ae0 (taxeditor): - fixed ClassCastException for FeatureNodeContainers
Patrick Plitzner
02:22 PM Revision 07178eab (cdmlib): - added timeout parameter to isServiceAvailable() method
Patrick Plitzner
11:39 AM Revision f4705e6f (taxeditor): - added basic drag'n'drop support to DerivateView
Patrick Plitzner
11:13 AM Revision 4629e304 (cdm-dataportal): adapting test to minor modification in page rendering (supressing map legend div and img if no legend is requested)
Andreas Kohlbecker

03/21/2014

09:19 PM Revision 78e4f4f8 (cdmlib): avoiding recurive calls, replaced by while loop
Andreas Kohlbecker
05:55 PM Revision 6ed36ca8 (cdmlib): avoiding NPE
Andreas Kohlbecker
04:24 PM Revision 1717116c (cdm-dataportal): minor bug fix
Andreas Kohlbecker
04:13 PM Revision af932304 (cdm-dataportal): avoiding "Notice: Undefined property:"
Andreas Kohlbecker
12:41 PM bug #2957: running maven site:site for Taxonomic Editor fails
1. is fixed by just adding an 'mvn install' - doesn't cost much.
2. is more tricky. I can't get much information on ...
Cherian Mathew
12:10 PM bug #2957: running maven site:site for Taxonomic Editor fails
So we are having two problems here:
1. jars are missing when `mvn install` was not run - a minor one
1. Problems d...
Andreas Kohlbecker

03/20/2014

05:54 PM Revision 26fb3778 (cdm-dataportal): implementing #3993 (Allow to exclude classifications from the classification browser)
Andreas Kohlbecker
05:54 PM Revision 2d683865 (cdm-dataportal): .gitignore
Andreas Kohlbecker
05:29 PM bug #2957: running maven site:site for Taxonomic Editor fails
The dependency problem is due to missing jars in the local repository. Running 'mvn install' before the site goals fi... Cherian Mathew
04:43 PM Revision 6d529a5b (cdmlib): bug fix: list and page REST services must return List or page objects, not ModelAndView
Andreas Kohlbecker
04:20 PM Revision 871f7f61 (taxeditor): added more tests for both lazy loading entities and collections
Cherian Mathew
04:06 PM Revision 63ce1315 (taxeditor): adding missing methods
Andreas Kohlbecker
03:29 PM Revision c15d14cd (cdmlib): checklist webservice optimized
*integrated a ModelAndView for file downloads
*integerated a ProgressMonitor for csv export
*export is threaded
*exte...
Alexander Oppermann
02:56 PM Revision 7fd3dd3f (cdmlib): adating test to modified number of taxa
Andreas Kohlbecker
02:30 PM Revision 33fee414 (cdm-dataportal): adapting webservice uris after refactoring taxon controllers for #2595 (portal/taxon/{uuid}/accepted/{uuid} producing too big data objects)
Andreas Kohlbecker
02:29 PM Revision 018d16b7 (cdmlib): refactoring taxon controllers and thus solving #2595 (portal/taxon/{uuid}/accepted/{uuid} producing too big data objects)
Andreas Kohlbecker
01:51 PM Revision 41eb24f1 (taxeditor): #4114 sort order in taxon navigator
Katja Luther
01:50 PM Revision 3b98b0db (cdmlib): #4114 sort order in taxon navigator and adding that autonyms could be whether infraspecific or infrageneric (Art. 22.3 and 26.3)
Katja Luther
01:31 PM Revision 0440906b (cdmlib): fixing #4112 (portal/taxon/{uuid}/accepted/{uuid} takes exceedingly much time in specific cases) and #2595 (portal/taxon/{uuid}/accepted/{uuid} producing too big data objects) this also solves the according issue mentioned in #3336 (Improve overall dataportal page loading performance)
Andreas Kohlbecker
01:31 PM Revision b92052e6 (cdmlib): implementing dao method listAcceptedTaxaFor, for #4112
Andreas Kohlbecker
12:12 PM Revision 6c8c81b2 (cdmlib): added containsValue method to retrieve value object for maps
Cherian Mathew
11:42 AM Revision 4e2eeb17 (cdmlib): remove link to the apt file for the documentation. ie, there is no external documentation yet
Patricia Kelbert
11:26 AM Revision e9f32da7 (cdmlib): add occurrence controler for the occurrence web-service
Patricia Kelbert
11:22 AM Revision 7ad4b0f9 (cdmlib): add new method for getting specimen and observation
Patricia Kelbert
11:20 AM Revision 36d85dcd (cdmlib): add new webservice for exporting occurrences for a specific taxon uuid
definition in xml files (web-inf) Patricia Kelbert
11:19 AM Revision 6e7b2ab3 (cdmlib): add new webservice for exporting occurrences for a specific taxon uuid
Patricia Kelbert

03/19/2014

04:56 PM task #4150 (New): compile edit map service documentation of new features in version v1.4_dev and v1.5_dev
compile documentation of new features in version v1.4_dev and v1.5_dev
the below excepts from a discussion relat...
Andreas Kohlbecker
04:31 PM Revision 7bd38c47 (cdmlib): fixing #4148 (problems with simple search)
Andreas Kohlbecker
04:03 PM bug #2957: running maven site:site for Taxonomic Editor fails
Created a new job http://int.e-taxonomy.eu/jenkins/view/EDIT%20Taxonomic%20Editor/job/taxeditor-SITE-DEPLOY/ for site... Cherian Mathew
02:07 PM bug #2957: running maven site:site for Taxonomic Editor fails
We should fix the repository configuration in the pom
for repository.springsource.com, see http://ebr.springsource...
Andreas Kohlbecker
01:43 PM bug #2957 (In Progress): running maven site:site for Taxonomic Editor fails
The main problem with the site goal is the fact that the 'project-info-reports:dependencies' plugin : http://maven.ap... Cherian Mathew
03:53 PM Revision 6f3fe1f5 (taxeditor): - fixed class cast exception resulting from TreeNodes of DerivateView
Patrick Plitzner
03:45 PM Revision 89ccc773 (taxeditor): - added context menu for TissueSample in DerivateView
Patrick Plitzner
11:40 AM Revision 83dfc434 (cdmlib): updating site doc by adding maven memory requirements and mentioning the requirement for maven 3
Andreas Kohlbecker
 

Also available in: Atom