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From 01/12/2014 to 02/10/2014

02/10/2014

07:22 PM Revision c8dc4736 (taxeditor): part 2 of preliminary solution to #4053 (Transient field User.authorities not refreshed on reloading entity)
Andreas Kohlbecker
07:21 PM Revision 1477640f (cdmlib): User.getAuthorities() made public as preliminary solution to #4053 (Transient field User.authorities not refreshed on reloading entity)
Andreas Kohlbecker
02:59 PM Revision 4e59c9c1 (taxeditor): solving #4013 (GrantedAuthority: Humane label of TaxonNode authorities)
Andreas Kohlbecker
02:26 PM Revision 2b01c847 (cdmlib)
Katja Luther
01:11 PM Revision 9233b7ac (cdmlib)
Katja Luther
12:26 PM Revision 26023986 (cdmlib): fix changeTaxonToSynonym with homotypic Synonyms
Katja Luther
10:36 AM Revision 3a12b230 (cdmlib): cleaned unused imports
Alexander Oppermann
10:25 AM Revision f5a80be8 (cdmlib): removed not used functionality see Ticket #3520
Alexander Oppermann

02/07/2014

03:24 PM Revision dc9010cd (cdmlib): WS CSV for redlist project
Alexander Oppermann
03:24 PM Revision 3a55befd (cdmlib): WS CSV for redlist project
Alexander Oppermann
12:55 PM Revision 629b5079 (taxeditor): move elevation back to first page #4037
Andreas Müller

02/06/2014

03:59 PM Revision c96ea9ca (cdmlib): removing @Override
Andreas Kohlbecker
03:21 PM Revision e477386c (cdmlib): part 1 of fixing #2414 (Group updating doesn't work) by using CascaseType.REFRESH and test method extended
Andreas Kohlbecker
03:21 PM Revision 8a448841 (cdmlib): more log output to debug CdmDataSourceBase.testConnection()
Andreas Kohlbecker
03:21 PM Revision c423c274 (cdmlib): fixing and implementing test for #3782 (Security Context is not updated after editing GrantedAuthorities of a Group)
Andreas Kohlbecker
03:21 PM Revision b838ce03 (cdmlib): removing old TODO
Andreas Kohlbecker
03:21 PM Revision eabaec9b (cdmlib): adding method checkServiceAvailable to UriUtils
Andreas Kohlbecker
03:21 PM Revision 11b48c3c (cdmlib): ignoring folder created by vaadin
Andreas Kohlbecker
03:20 PM Revision ad8d0610 (cdmlib): completely reworking UserServiceImplTest and also renaming it to UserAndGroupServiceImplTest
Andreas Kohlbecker
03:18 PM Revision f4ba1ef6 (taxeditor): part 2 of fixing #2414 (Group updating doesn't work) by committing and restarting the transaction in the conversation
Andreas Kohlbecker
03:16 PM Revision c370c5cd (taxeditor): more log.debug statements
Andreas Kohlbecker
01:47 PM Revision f2457577 (taxeditor)
Katja Luther
01:45 PM Revision 7588f37a (taxeditor): adding the operation and handler files
Katja Luther
12:58 PM Revision c918301b (taxeditor): move the change accepted to Synonym Operation to taxon navigator.
Katja Luther
12:00 PM Revision 6c37b091 (cdmlib): Changes for RedList Webservice see Ticket #4040
Alexander Oppermann
11:38 AM bug #4048 (Worksforme): Changing the name in free text editor does not refresh the taxon navigator view
Overview ticket: #4135
Katja Luther

02/05/2014

02:42 PM Revision bb4429d3 (cdmlib): use unit in range.toString #4035
Andreas Müller
02:21 PM Revision 14cbded8 (taxeditor): changing label for sibling and child Polytomous Key, also change menu order #4029
Andreas Müller
01:50 PM Revision 5fe12f8a (cdmlib): updated version numbers to 3.3.0
Cherian Mathew
12:39 PM Revision a1f07d0a (cdmlib)
Katja Luther
10:32 AM Revision fe3ac03f (cdmlib): fixes for the delete of topmost nodes (sortindex problem), concurrent modification problem during delete of names and delete taxa with taxon relationships
Katja Luther

02/04/2014

06:20 PM Revision 0fb34a3c (taxeditor): water -> watersurface #4031
Andreas Müller
04:14 PM Revision d66bafe2 (taxeditor): change statement to state(ment) #3864
Andreas Müller
04:08 PM Revision 96ca782d (utis-core): data_refinement_workflow.beta.t2flow : corrected workflow name
update-beta-to-stable.sh : added versioning for insteraction pages Cherian Mathew
04:08 PM feature request #4028 (Closed): Distinguish Features and Characters
Maybe we will need to distinguish general Features from Characters used for structured descriptive data. Could be a s... Andreas Müller
03:07 PM feature request #4022: One click installer for TaxEditor
Replying to [[comment2|a.mueller]]:
> We may also need something similar for Dataportals and CDM Server
Yes, and we...
Andreas Kohlbecker
02:28 PM feature request #4022: One click installer for TaxEditor
We may also need something similar for Dataportals and CDM Server
Andreas Müller
02:27 PM feature request #4022 (New): One click installer for TaxEditor
Installing the Taxonmic Editor has been identified as a big obstacle to a lot of users since the installation process... Andreas Müller
02:37 PM Revision 3c0bd081 (utis-core): .gitignore : ignore build / settings dir
dependency-reduced-pom.xml : pom for creating a stand alone jar
cyperaceae.e-monocot.csv, vibrant.csv : sample data f...
Cherian Mathew
02:32 PM Revision e05dd96f (utis-core): added refine client code to load / delete data from a given refine server
Cherian Mathew
02:31 PM Revision b573ad91 (utis-core): corrected collection date in occurrence response
renamed occurrence package Cherian Mathew
02:28 PM Revision a12eb5f5 (cdmlib)
Katja Luther
02:25 PM Revision c4b64bc5 (utis-core): pom.xml : removed unused dependencies and added httpclient for httpost (refine)
BaseChecklistClient, AggregateChecklistClient, GBIFBackboneClient, TaxoRESTClient : added new constructor
GBIFCheckli...
Cherian Mathew
02:24 PM feature request #4021 (Feedback): H2 running in Server mode
H2 running in Server mode
Andreas Müller
01:25 PM Revision 8a78e9e7 (taxeditor): adding faq entry on crashes in KDE and other ubunu desktop environments
Andreas Kohlbecker
01:25 PM Revision f8c7e25c (taxeditor): add .gitignore
Andreas Kohlbecker
11:59 AM Revision a2616e50 (cdmlib): Cleaning Components
Alexander Oppermann
10:54 AM Revision 74537c7a (cdmlib): Bug fix...ui is closed when logged out...this leads to a complete reset of the ui provider
Alexander Oppermann
10:46 AM feature request #4014 (New): User friendly way to assign Authority Roles to users or to Groups
Some thought and possible solutions:
* select list for Roles ?
* allow assigning roles direclty to users with...
Andreas Kohlbecker
10:27 AM Revision dc76e4f0 (utis-core): data_refinement_workflow.beta.t2flow :
- added refine server check
- added possibility to use external refine server
- moved refine server calls to jar
u...
Cherian Mathew

02/03/2014

06:09 PM feature request #4011 (Closed): disallow changing publish flag for users with unsuffcient rights
solved for the TaxonBase Details view: r20053, r20054
the SpecimensOrObservations Details view has no publish flag i...
Andreas Kohlbecker
12:22 PM feature request #4011 (In Progress): disallow changing publish flag for users with unsuffcient rights
Andreas Kohlbecker
12:22 PM feature request #4011 (Worksforme): disallow changing publish flag for users with unsuffcient rights
related to :
* permission management: #3980 (Implement PUBLISH role into cdmlib security)
* editor UI: #3739 ...
Andreas Kohlbecker
06:07 PM Revision 9c10e526 (taxeditor): solving #4011 (disallow changing publish flag for users with insuffcient rights) for TaxonBase
Andreas Kohlbecker
06:07 PM Revision c1ffc80d (taxeditor): solving #4011 (disallow changing publish flag for users with insuffcient rights) for TaxonBase
Andreas Kohlbecker
04:52 PM Revision 4eb57b3c (taxeditor): adapting to new use new ICdmPermissionEvaluator
Andreas Kohlbecker
04:51 PM Revision 4a7a8d13 (taxeditor): adapting to new use new ICdmPermissionEvaluator
Andreas Kohlbecker
02:59 PM Revision 6484eff8 (taxeditor): fixing #4012 (ClassCastException in User and Group Bulk Editor) by revering one line of commit r19946 - comment
Andreas Kohlbecker
02:54 PM Revision b664b229 (taxeditor): fixing #4012 (ClassCastException in User and Group Bulk Editor) by revering one line of commit r19946
Andreas Kohlbecker
11:57 AM Revision 48ccf94a (cdmlib): introducting ICdmPermissionEvaluator
Andreas Kohlbecker
11:50 AM Revision 4ac1a923 (cdmlib): fix bug in change accepted taxa to synonym with taxonrelations
Katja Luther

01/31/2014

04:59 PM Revision 5a845253 (cdmlib): implementing global PUBLISH role, also introducing the interface IPublishable; solves #3980 (Implement PUBLISH role into cdmlib security)
Andreas Kohlbecker
02:28 PM Revision 3e931199 (cdmlib): remove import
Andreas Müller
10:45 AM Revision 1e6479e9 (taxeditor): committed merge
Ayco Hollemann
10:37 AM Revision 0c5e4e2e (cdmlib): committed merge
Ayco Hollemann
09:56 AM Revision 2fc97419 (cdm-dataportal): dataportal now uses the DescriptionInfoDTO service - cleaning up old stuff
Andreas Kohlbecker
09:55 AM Revision 092744e1 (cdm-dataportal): dataportal now uses the DescriptionInfoDTO service - a lot refactoring, old stuff left for now as reference
Andreas Kohlbecker
07:38 AM Revision 68e8e327 (cdmlib): adapring initstrategy for DescriptionInfoDTO service
Andreas Kohlbecker

01/30/2014

04:50 PM Revision 2c6666af (cdmlib)
Ayco Hollemann
04:45 PM Revision eff9c20e (utis-core): cosmetic changes
Cherian Mathew
03:25 PM Revision a1164d98 (cdmlib): adapt delete of rootnodes
Katja Luther
12:28 PM Revision 27fdf803 (cdmlib): adding missing editor
Andreas Kohlbecker
12:26 PM task #4009 (New): consider using jackson as json library
using jackson instead of json-lib may have an significant impact on the REST service performance:
perfomance o...
Andreas Kohlbecker
12:00 PM Revision 20d40cb9 (cdmlib): DistributionInfoForTaxon methods implemented in services and controllers
Andreas Kohlbecker
12:00 PM Revision 8daea712 (cdmlib): reverting launch config
Andreas Kohlbecker
10:19 AM Revision f4b5d735 (taxeditor): added exclusion filter for portal controllers
Cherian Mathew

01/29/2014

09:04 PM Revision 7b9dad06 (cdmlib): cleanup
Andreas Müller
08:43 PM Revision 7c01e338 (cdmlib): minor
Andreas Müller
08:41 PM Revision 87cab9c5 (cdmlib): Set setTitleCache to deprecated and add javadoc
Andreas Müller
05:39 PM Revision 84edaaf7 (taxeditor): excluding vaading packages from component scan
Cherian Mathew
05:25 PM Revision 6b2c2013 (cdmlib): debug synonyms in proibiosphere import
Patricia Kelbert
03:41 PM Revision 77d74526 (taxeditor): - added persistence sources
Patrick Plitzner
02:43 PM Revision 187625ab (taxeditor): - replaced togglable title cache field with text label to enter polytomous key label (fixes #3952)
Patrick Plitzner
02:24 PM Revision 580e2dc8 (cdmlib): fix accepted to synonym operation by removing call of delete(name)
Andreas Müller
02:23 PM Revision 2c87c797 (cdmlib): add exception handling for name relationship removal
Andreas Müller
02:21 PM Revision 918c7105 (cdmlib): minor
Andreas Müller
02:20 PM Revision 91e01be2 (cdmlib): add some listeners commented code for Reference class to handle abbrevTitleCache refresh later on
Andreas Müller
02:19 PM Revision d210822a (cdmlib): add default values for integer to columnAdder
Andreas Müller
02:12 PM Revision 8ba44820 (cdmlib): done: #4006 (remove general map parameters from distribution and occurrence map service methods)
Andreas Kohlbecker
02:12 PM Revision b2747d63 (cdmlib): introducing DistributionInfoDTO
Andreas Kohlbecker
02:10 PM Revision a05a5c32 (taxeditor): editor part done for #4006 (remove general map parameters from distribution and occurrence map service methods)
Andreas Kohlbecker
01:36 PM Revision 120c586b (cdmlib): cleaned unused imports
Alexander Oppermann
01:34 PM Revision 4bbe913f (cdmlib): cleaned unused imports
Alexander Oppermann
01:10 PM Revision 93888aab (taxeditor): preparing for removal of params - #4006 (remove general map parameters from distribution and occurrence map service methods)
Andreas Kohlbecker
12:56 PM Revision b612beb3 (cdmlib): adding Vaadin compatibility to trunk
Alexander Oppermann
12:05 PM Revision 65273e6e (cdmlib): merged trunk into branch
Alexander Oppermann
11:50 AM Revision cfc1148e (cdmlib): cleaned package cdmlib-remote-webapp
Alexander Oppermann
11:49 AM Revision a4e7e6b5 (cdmlib): cleaned Vaadin Data...to generate these you have to run mvn vaadin:compile in package cdmlib-remote
Alexander Oppermann
11:45 AM Revision 476662d7 (cdmlib): Update Widgetset docu
Alexander Oppermann
11:45 AM Revision d91ae252 (taxeditor): - added *.xlsx and *.* to SpecimenCdmExcelImport file chooser (fixes #3971)
Patrick Plitzner
11:09 AM Revision af0bf129 (cdmlib): Changes DefaultView text
Alexander Oppermann
11:04 AM Revision 16e36c23 (cdmlib): *creating package UISet
*created package disabled
*created defaultView
Alexander Oppermann
11:03 AM Revision 91591e82 (cdmlib)
Alexander Oppermann
11:03 AM Revision 486b381c (cdmlib)
Alexander Oppermann
10:37 AM Revision aa63dfb4 (cdm-dataportal): #3977 (allow defining the MarkerType to filter out excluded NamedAreas from distributions)
Andreas Kohlbecker
10:37 AM Revision adf61b1c (cdm-dataportal): removing obsolte REST endpoint /term/tdwg/*
Andreas Kohlbecker
10:33 AM Revision b2bac578 (cdmlib): adaption and fixes in cdmlib-remote for #3977 (allow defining the MarkerType to filter out excluded NamedAreas from distributions)
Andreas Kohlbecker
10:33 AM Revision 09320948 (cdmlib): removing obsolte REST endpoint /term/tdwg/*
Andreas Kohlbecker
10:33 AM Revision f309cb4c (cdmlib): code cosmetics
Andreas Kohlbecker
10:33 AM Revision a561758b (cdmlib): comments towards refactoring IService.list()
Andreas Kohlbecker
09:39 AM bug #3790: After swapping accepted <> synonym the TaxonNavigator should be refreshed
related to #4004
Patrick Plitzner
08:58 AM Revision ca9fc8ea (taxeditor): - implemented SynonymRelationship detail section for the DetailsView of Synonyms (#3588 #3589)
Patrick Plitzner

01/28/2014

05:42 PM Revision e96913b9 (cdmlib): add stepName
Andreas Müller
03:39 PM Revision 070bbc68 (cdmlib)
Alexander Oppermann
02:20 PM Revision 64d0afdc (taxeditor): - removed switch for specific-details views
Patrick Plitzner
02:12 PM Revision 73ffb191 (cdmlib): minor
Andreas Müller
02:08 PM Revision 43ee0614 (cdmlib-apps): FdAC vitaria source added
Andreas Müller
02:07 PM feature request #3904: EuroMed: Implement filtering rules for distributions
more commits:
* r19971
* r19992
Andreas Kohlbecker
10:57 AM feature request #3904 (Resolved): EuroMed: Implement filtering rules for distributions
test implemented r19970
@Eckhard: You can start testing this once once the ticket #3977 (allow defining the Marker...
Andreas Kohlbecker
10:54 AM feature request #3904: EuroMed: Implement filtering rules for distributions
Replying to [[comment14|a.kohlbecker]]:
> for now we will use a second database for publishing, the entities marked ...
Andreas Kohlbecker
02:06 PM Revision 955457ed (cdmlib): correcting documentation and adapting test - #3904 (EuroMed: Implement filtering rules for Distributions)
Andreas Kohlbecker
02:06 PM Revision 904ef29c (cdmlib-apps): adapt FdAC ferns import to new io implementation
Andreas Müller
02:00 PM Revision 2b5a7979 (cdmlib): reintegrate branch patricia
Patricia Kelbert
01:59 PM Revision 83ba7fc3 (taxeditor): - removed remaining occurences of "campanula"
Patrick Plitzner
01:52 PM Revision 6ece3eb4 (cdmlib-apps): comment publish flag for Synonyms handling in BM import
Andreas Müller
01:30 PM Revision 0d041cc5 (taxeditor): - removing campanula package completely 3/3
Patrick Plitzner
01:29 PM Revision 04482d9e (taxeditor): - removing campanula package completely 1/3
Patrick Plitzner
01:28 PM Revision dacb59c9 (taxeditor): - moved ICdmFormElement to ui.element
Patrick Plitzner
01:19 PM Revision 913c77b4 (taxeditor): - cleaned up package structure
- removed campanula package Patrick Plitzner
01:17 PM Revision 3f81dcb0 (taxeditor): - increased version number
- added sources Patrick Plitzner
01:01 PM Revision 27fede92 (cdmlib): merge trunk cmdlib-io into branch
Patricia Kelbert
12:58 PM Revision 04d392a3 (cdmlib): update cdmlibio branch patricia
Patricia Kelbert
12:56 PM Revision f3715fb4 (cdmlib-apps): reintegrate cdmlib-apps patricia into trunk
Patricia Kelbert
12:55 PM Revision 7d96bbee (cdmlib): update branch patricia
Patricia Kelbert
12:54 PM Revision ed1b9a56 (cdmlib): update branch patricia
Patricia Kelbert
12:53 PM Revision 2b19f920 (cdmlib): changes during restructering the vaadin package
Alexander Oppermann
12:52 PM Revision b4272341 (cdmlib): demoExport
Alexander Oppermann
12:52 PM Revision 7c20dfbe (cdmlib): restructering vaadin package -- new view
Alexander Oppermann
12:49 PM Revision 016771f0 (cdmlib): merge trunk into apps_branch
Patricia Kelbert
12:48 PM Revision a936172b (taxeditor): - changed static root element (FieldUnit) of DerivateView to the topmost derivate there is
Patrick Plitzner
12:46 PM Revision 74ee69c5 (cdmlib): update branch patricia
Patricia Kelbert
12:35 PM Revision e976ec34 (cdmlib): corecting documentation, removing obsolete rule and adapting test accordingly - #3904 (EuroMed: Implement filtering rules for Distributions)
Andreas Kohlbecker
10:51 AM Revision 4f2bda54 (cdmlib): implementing test for #3904 (EuroMed: Implement filtering rules for Distributions) and a little bugfix
Andreas Kohlbecker
09:36 AM Revision aa5d76aa (taxeditor): - commented not-yet-existing SynonymRelationShip DetailsView classes
Patrick Plitzner
09:31 AM Revision c0ca45cc (taxeditor): - added MediaSpecimen DetailsView
- added empty element if there is no details view available Patrick Plitzner

01/27/2014

04:30 PM task #3560: Withheld unpublished taxa from webservice used in E+M dataportal
for now we will use a second database for publishing, the entities marked as unpublished can be filtered out at the d... Andreas Kohlbecker
02:22 PM Revision 3113db26 (cdm-dataportal): simplifying permissions for cdm entity page cache refresh
Andreas Kohlbecker
01:49 PM feature request #3904: EuroMed: Implement filtering rules for distributions
for now we will use a second database for publishing, the entities marked as unpublished can be filtered out at the d... Andreas Kohlbecker
12:11 PM Revision e3fa3951 (cdmlib): performance fix for TaxonController.getMedia() - no longer always loading all the taxon relations, speedup by 0,66
Andreas Kohlbecker
12:10 PM Revision 1cb9d1f1 (cdmlib): fixing #3974: NPE in MediaController.doGetMediaMetaData()
Andreas Kohlbecker
12:10 PM Revision fd82497b (cdmlib): comment
Andreas Kohlbecker
12:10 PM Revision 13a7f46f (cdmlib): documentation on the TransmissionEngineDistribution REST service
Andreas Kohlbecker
12:10 PM Revision 6ef7e2ed (cdmlib): documentation on the TransmissionEngineDistribution REST service
Andreas Kohlbecker
12:09 PM feature request #3533: Prefill nomenclatural reference information if possible
> related to and possibly a duplicate of #3983 (easier referenz selection - Euro+Med sourceID [DISCUSS])
It is rela...
Andreas Müller
12:07 PM Revision f67ffd4e (cdm-dataportal): hiding publish flag in output
Andreas Kohlbecker

01/24/2014

04:57 PM Revision f3a06275 (cdmlib): try to fix ConcurrentModification Exception in removeNameRelationshipByDeleteConfig
Andreas Müller
03:50 PM Revision 1f6e6fdc (cdmlib): making boolean methods in TaggedText all Transient #3991
Andreas Müller
02:48 PM task #3996 (Rejected): [Overview] Algaterra search functionality
see attached document
Andreas Kohlbecker
02:15 PM feature request #3994 (Closed): Select widget to choose the filter areas for the advanced search
Currently only the NamedAreas in use are shown in a simple checkboxlist. This needs to be improved.
Requirements...
Andreas Kohlbecker
01:59 PM Revision 65412c98 (taxeditor): Snapshot branch for version 3.3.1-SNAPSHOT
edit-jenkins
01:59 PM Revision f6926ee9 (taxeditor): Updated version in config files to 3.3.1-SNAPSHOT
edit-jenkins
11:25 AM bug #3992: [CHECK] Use last scrutiny instead of sec reference
Hallo,

Ich erinnere mich, dass es einen wichtigen Grund gab, warum wir sec. Referenz und last scrutiny getrennt ...
Andreas Müller
11:15 AM bug #3992 (Resolved): [CHECK] Use last scrutiny instead of sec reference
In E+M the last scrutiny field may better represent the meaning of the secundum reference than the PTRefFK field does... Andreas Müller
11:25 AM feature request #3990: [DISCUSS] How to implement citation suggestion to each taxon
Anton:
Hallo,

Ich erinnere mich, dass es einen wichtigen Grund gab, warum wir sec. Referenz und last scrutiny ...
Andreas Müller
11:24 AM feature request #3990: [DISCUSS] How to implement citation suggestion to each taxon
NOTE:
Maybe the current imports do not yet reflect the above described situation correctly and do still fill the Ta...
Andreas Müller
11:02 AM feature request #3990: [DISCUSS] How to implement citation suggestion to each taxon
Hi Eckhard,
richtig, im Berlin Model / E+M Version wird das wie ich finde ein bischen seltsam und redundant gehande...
Andreas Müller
10:38 AM feature request #3990: [DISCUSS] How to implement citation suggestion to each taxon
Maybe the source field can be filled by the sec reference information of each taxon.
Andreas Müller
10:37 AM feature request #3990: [DISCUSS] How to implement citation suggestion to each taxon
Hi Eckhard,
can you please let us know where this information is exactly stored in the Berlin Model for the family ...
Andreas Müller
11:04 AM feature request #3989: [DISCUSS] Allow defining the vocabularies to be offered in the select dialogs
The arrow button in the upper right corner already allows filtering in theory, but this functionality currently doesn... Andreas Müller
09:59 AM Revision e637d415 (cdmlib): restructering packet for reintegration
*fixed save error which seems to occur totally radomly
*fixed vaadin:compile error
*fixed build path in pom file
Alexander Oppermann

01/23/2014

06:13 PM feature request #3990 (Closed): [DISCUSS] How to implement citation suggestion to each taxon
... and implement data part.
In the original EuroPlusMed portal on each taxon page a citation string labeled _Sour...
Andreas Kohlbecker
06:03 PM feature request #3989 (Resolved): [DISCUSS] Allow defining the vocabularies to be offered in the select dialogs
When entering distributions selecting an NamedArea can be cumbersome if multiple parallel vocabularies exist which ha... Andreas Kohlbecker
05:55 PM feature request #3907: EuroMed: implement condensed "status" string of distribution information
the condensed "status" string should be created in the cdmlib-service
also think about creating a combined REST ser...
Andreas Kohlbecker
04:36 PM Revision f9c89f4d (cdmlib): commit merge
Ayco Hollemann
04:32 PM Revision 98bfef31 (taxeditor): commit merge
Ayco Hollemann
04:19 PM Revision ac512c2f (cdmlib): committing merge
Ayco Hollemann
04:17 PM Revision db468f2d (cdmlib): Created listener stubs for validation
Ayco Hollemann

01/22/2014

04:28 PM Revision bf61d25f (taxeditor): - removed specific source code path
Patrick Plitzner
10:57 AM Revision 50e76759 (taxeditor): merged campanula branch to trunk. Main features are: BioCase Query via Imports, Derivate Search View, Derivate (Hierarchy) View, Derivate perspective, type-specific DetailsViews for specimens
Patrick Plitzner
09:54 AM feature request #3983: [DISCUSS] Easier reference selection - Euro+Med sourceID
Hallo Andreas,

Andreas und ich haben uns gerade gefragt, wo beim Import die Reference-Codes für Literatur (z.B. fü...
Andreas Kohlbecker
09:46 AM feature request #3983 (Duplicate): [DISCUSS] Easier reference selection - Euro+Med sourceID
Hallo,

bei der Angabe von Referenzen zum Beispiel von Verbreitungsdaten bräuchten wir in Euro+Med einige Erleic...
Andreas Kohlbecker
09:48 AM feature request #3984 (Closed): Easier reference selection - recently used references
ERS:

bei der Angabe von Referenzen zum Beispiel von Verbreitungsdaten bräuchten wir in Euro+Med einige Erleichter...
Andreas Kohlbecker

01/21/2014

06:50 PM task #3560: Withheld unpublished taxa from webservice used in E+M dataportal
This must be implemented at the persistence level
* TaxonDao
* SpecimenDao
* Search functions
can we use Hiber...
Andreas Kohlbecker
04:03 PM Revision 57c74c0d (taxeditor): merge-update from trunk
Patrick Plitzner
03:52 PM Revision 37167c98 (taxeditor): - added AbstractUnboundEntityCollectionSection which allows adding elements to collection sections without adding them to the model object
Patrick Plitzner
01:57 PM Revision 7676d726 (cdmlib): committed merge
Ayco Hollemann
01:27 PM feature request #3982 (New): Update name in source data when moving a Description to another Taxon
This is related to #3791: Implement operation to move a Description to another Taxon and will be an analogous impleme... Andreas Kohlbecker
01:23 PM feature request #3907: EuroMed: implement condensed "status" string of distribution information
moving open tickets back to original milestone
Andreas Kohlbecker
01:23 PM bug #3804: E+M import Person titles contain Object.toSting() representations
moving open tickets back to original milestone
Andreas Kohlbecker
01:23 PM bug #3788: sort order of search results broken in free-text taxon search
moving open tickets back to original milestone
Andreas Kohlbecker
09:34 AM Revision 65f79ee6 (taxeditor): merge-update from trunk
Patrick Plitzner
09:33 AM Revision 05e64466 (taxeditor): - added cdmlib sources
Patrick Plitzner
09:30 AM Revision 27318d2d (taxeditor): - partly fixed sequence reference collection section
Patrick Plitzner

01/20/2014

05:45 PM feature request #2625 (Resolved): [E+M Overview] Data aggregation functionalities for E+M (TransmissionEngine)
as far as I remember this is ticket is completed and can now be reviewed
Andreas Kohlbecker
05:07 PM feature request #2625: [E+M Overview] Data aggregation functionalities for E+M (TransmissionEngine)
adding text of email discussion on how to treat references in the transmission engine: attachment:Discussion-Transmis... Andreas Kohlbecker
05:16 PM task #3978 (Closed): Specimenview path: Compact representation of exactLocation
Hallo Andreas,
Bei der Specimenanzeige gäbe es glaube ich noch einige einfache Verbesserungsmöglichkeiten.
...
Andreas Kohlbecker
04:48 PM Revision a537f285 (cdmlib): fixing hibernate search annotation
Andreas Kohlbecker
03:57 PM Revision 87924e53 (taxeditor): - added java package for different occurrence/specimen types
- moved "show field unit" option to "Bulk Editor" preference page
- added preference to show only type-specific deta...
Patrick Plitzner
03:19 PM feature request #3904: EuroMed: Implement filtering rules for distributions
third rule is also implemented: r19733
now we only need a unit test for this
Andreas Kohlbecker
09:58 AM Revision c167b004 (taxeditor): merge-update fixes
Patrick Plitzner
09:51 AM Revision 59608b88 (taxeditor): merge-update from trunk
Patrick Plitzner
09:12 AM Revision 67ebf787 (taxeditor): - added separate section for primer and cloning
- removed "null" message in data source conversion dialog Patrick Plitzner

01/19/2014

10:38 AM Revision d919773a (cdmlib): TODO comment
Andreas Kohlbecker

01/17/2014

03:20 PM Revision 2990a1b0 (cdm-dataportal): prohibit select elements from overflowing the parent container
Andreas Kohlbecker

01/16/2014

03:34 PM feature request #3907: EuroMed: implement condensed "status" string of distribution information
moving resolved tickets to release milestone
Andreas Kohlbecker
03:33 PM bug #3804: E+M import Person titles contain Object.toSting() representations
moving resolved tickets to release milestone
Andreas Kohlbecker
03:33 PM bug #3788: sort order of search results broken in free-text taxon search
moving resolved tickets to release milestone
Andreas Kohlbecker
03:33 PM feature request #3472: Update name in source data when changing an accepted taxon into a synonym
moving resolved tickets to release milestone
Andreas Kohlbecker
03:33 PM feature request #2854: Implement part of other title for part of articles and part of booksections
moving resolved tickets to release milestone
Andreas Kohlbecker
11:57 AM Revision b7bc23f3 (cdmlib): debug unecessary taxonnode proibio
Patricia Kelbert
11:09 AM Revision 038b0c30 (cdm-server): documentation the the UI
Andreas Kohlbecker
10:41 AM Revision 43251923 (cdm-dataportal): hotfix to loosen hard dependency from devel module
Andreas Kohlbecker
10:14 AM Revision 897d0d02 (taxeditor): Updated version in config files to 3.3.0
edit-jenkins
10:12 AM Revision f6181d2d (cdmlib-apps): update poms for app-import
Andreas Müller
10:11 AM Revision 1bb9b70a (cdmlib-apps): update poms for eflora and pesi
Andreas Müller
08:08 AM Revision 11172412 (cdm-server): fixing version number, setting it to 3.3.1-SNAPSHOT
Andreas Kohlbecker
07:46 AM Revision 551bf0bc (cdmlib): fixing versions numbers, setting them to 3.3.1-SNAPSHOT
Andreas Kohlbecker

01/15/2014

09:50 PM feature request #3972 (Closed): Strictly validate username to not null and not empty
see also #3826
Andreas Müller
09:13 PM task #3603: Remove creation of dummy DefinedTerm when creating new Term related entities
> Scope section of the DetailsViewer for a Description
When I try to create ANY scope here I always get a red scree...
Andreas Müller
08:58 PM feature request #3561 (Closed): Implement editing for abbreviated title
Andreas Müller
07:34 PM task #3967 (Duplicate): Rethink original spelling strategy
see #2874
Original spelling was implemented as a name relationship. This is critical from a performance point of...
Andreas Müller
07:21 PM feature request #2975 (Closed): Add noDataStatus to descriptive data (QuantitativeData and CategoricalData)
Andreas Müller
06:45 PM Revision 44712e0c (cdm-dataportal): branch for drupal themes 3.3
edit-jenkins
06:42 PM Revision 3dc9206d (cdm-server): [maven-release-plugin] prepare for next development iteration
edit-jenkins
06:42 PM Revision b00018fa (cdm-server): [maven-release-plugin] prepare release cdm-server-3.3
edit-jenkins
06:34 PM Revision 46dc7956 (cdm-server): [maven-release-plugin] prepare for next development iteration
edit-jenkins
06:34 PM Revision b2192d8e (cdm-server): [maven-release-plugin] prepare release cdm-server-3.3
edit-jenkins
06:20 PM feature request #3816: Create "Undefined" status and choose it for NULL status
moving unresolved tickets to next release milestone due release of version 3.3
Andreas Kohlbecker
06:20 PM feature request #3580: Write permission error with temporary cdmserver echache dir
moving unresolved tickets to next release milestone due release of version 3.3
Andreas Kohlbecker
06:20 PM feature request #3465: Function to copy secundum reference of a given taxon node to all it's children
moving unresolved tickets to next release milestone due release of version 3.3
Andreas Kohlbecker
06:20 PM task #3408: replace spring-modules-cache by up to date implementation
moving unresolved tickets to next release milestone due release of version 3.3
Andreas Kohlbecker
06:20 PM feature request #3362: Enabling sound files (mp3) in EDITor and data portal
moving unresolved tickets to next release milestone due release of version 3.3
Andreas Kohlbecker
06:20 PM feature request #3133: security: preparation and first steps for Role, CdmAuthority and GrantedAuthorityImpl implement GrantedAuthority
moving unresolved tickets to next release milestone due release of version 3.3
Andreas Kohlbecker
06:20 PM bug #3098: CdmPermissionEvaluator can test for multiple permissions
moving unresolved tickets to next release milestone due release of version 3.3
Andreas Kohlbecker
06:20 PM bug #2939: ehcache diskStore conflict?
moving unresolved tickets to next release milestone due release of version 3.3
Andreas Kohlbecker
06:20 PM task #2501: Remove redundant SDD import class
moving unresolved tickets to next release milestone due release of version 3.3
Andreas Kohlbecker
06:18 PM Revision a07f89f1 (cdmlib): [maven-release-plugin] prepare for next development iteration
edit-jenkins
06:18 PM Revision b897cc4f (cdmlib): [maven-release-plugin] prepare release cdmlib-parent-3.3
edit-jenkins
05:44 PM Revision 6b5ba3cc (cdmlib): adapting method to new classification structure
Andreas Kohlbecker
05:03 PM Revision 5b16dccb (cdmlib): adapting method to new classification structure
Andreas Kohlbecker
04:39 PM Revision 5b91e2b0 (cdmlib): adapting method to new classification structure
Andreas Kohlbecker
03:26 PM Revision 3f6e7646 (cdmlib): adapting method to new classification structure
Andreas Kohlbecker
02:21 PM Revision 1b880bc7 (cdmlib): adapting method to new classification structure
Andreas Kohlbecker
01:42 PM Revision bf10df38 (cdmlib): fix stupid bug in SimpleSchemaUpdater
Andreas Müller
12:54 PM Revision dcc34109 (cdmlib): ICdmGenericDao / CdmGenericDaoImpl / ICommonService / CommonServiceImpl : added initializeCollection method
LTWLazyLoadingTest / LTWLazyLoadingTest.xml : moved test class
CdmLazyLoader : added functionality for collections
ao...
Cherian Mathew
12:54 PM Revision 856a4fee (cdmlib): fixing problems related to new taxon node structure
Andreas Kohlbecker
12:18 PM Revision 43bf99f8 (cdmlib): handling of maxId of TaxonNode for empty databases
Andreas Müller
12:17 PM Revision 57385c37 (cdmlib): remove some TODOs
Andreas Müller
11:54 AM Revision d87c8053 (taxeditor): - updated "update datasource" message popup
Patrick Plitzner
11:32 AM Revision 476c8879 (cdmlib): adding element to init strategy for classification children
Andreas Kohlbecker
09:07 AM Revision ba9e85b1 (taxeditor): - updated "update datasource" message popup
Patrick Plitzner
01:11 AM Revision bc6b6a1a (cdmlib-apps): Update eflora destinations
Andreas Müller
01:06 AM Revision a9fb2e4d (cdmlib): doc
Andreas Müller

01/14/2014

11:18 PM Revision f1b1b1e7 (taxeditor): fix missing publish flag for synonyms
Andreas Müller
10:42 PM feature request #3958 (Closed): Handle CDMPreference table
It is implemented in model but not yet used and not filled with any data. Methods in Service layer are also missing.
...
Andreas Müller
10:33 PM bug #3658 (New): Update Nomenclatural code for datasources
Andreas Müller
10:30 PM feature request #3955 (New): Are TermVocabularies URIs needed
We do now have uri and a termSourceUri. Are both needed
Andreas Müller
10:08 PM Revision acfdcc30 (cdmlib): remove publish marker from synonyms #3883
Andreas Müller
09:57 PM Revision bda16fe3 (cdmlib): removed tissue as kindOfUnit
Andreas Müller
09:52 PM Revision c2e16ab6 (cdmlib): update vocabulary titleCaches, untested #3708
Andreas Müller
09:41 PM Revision 30c8f3d6 (cdmlib): remove uri from feature tree #3519
Andreas Müller
09:33 PM feature request #2975 (Resolved): Add noDataStatus to descriptive data (QuantitativeData and CategoricalData)
implemented r19853, r19854, r19855
Andreas Müller
01:14 PM feature request #2975 (In Progress): Add noDataStatus to descriptive data (QuantitativeData and CategoricalData)
Andreas Müller
09:31 PM Revision b54dcf8d (cdmlib): update test scripts for unknownData flag #2975
Andreas Müller
09:28 PM Revision 6f00d6f6 (cdmlib): add unknownData to structured descriptive data #2975
Andreas Müller
09:27 PM Revision 78b8f14a (cdmlib): add unknownData to structured descriptive data #2975
Andreas Müller
09:13 PM Revision 56b7aaeb (cdmlib): fix boolean value bug for Postgres and maybe H2
Andreas Müller
08:50 PM Revision 46008e60 (cdmlib): schema update to 3.3.1
Andreas Müller
07:50 PM Revision 9f85d9e1 (cdmlib): synchronize test datastructure
Andreas Müller
07:36 PM Revision cf979fb7 (cdmlib): minor
Andreas Müller
07:36 PM Revision ed5a46f7 (cdmlib): fix taxon service search test
Andreas Müller
07:35 PM Revision 43477a55 (cdmlib): fix taxon service search test
Andreas Müller
07:19 PM Revision 5a271454 (cdmlib): fixing 2 tests for the new classification structure
Andreas Müller
06:07 PM Revision 5d00156f (cdmlib): Fixing some test for new Classification structure in cdmlib-model
Andreas Müller
05:15 PM Revision b46dec0a (taxeditor): merge-update from trunk
Patrick Plitzner
05:01 PM Revision 0ee651f8 (taxeditor): fix for #3557
- reactivated details view for taxon relationships
- added doubtful flag
Patrick Plitzner
03:49 PM Revision 114337dc (cdmlib)
Katja Luther
03:47 PM Revision c93bf342 (cdmlib): rootNode adaption for classification
Katja Luther
03:34 PM Revision 3546c691 (taxeditor): - also allow *.xlsx and *.* for Excel import (fixes #3657)
Patrick Plitzner
03:06 PM Revision 0e671716 (taxeditor): - set recordBasis according to selecting in context menu (fixes #3753)
Patrick Plitzner
02:10 PM Revision 9d9feae4 (cdmlib): - made default constructor public to avoid an InstantiationException (see https://stackoverflow.com/questions/7273125/hibernate-envers-and-javassist-enhancement-failed-exception)
Patrick Plitzner
01:41 PM task #3603 (Resolved): Remove creation of dummy DefinedTerm when creating new Term related entities
Cherian Mathew
01:31 PM Revision fad47a04 (taxeditor): change ICBN to ICNAFP in manual #3745
Andreas Müller
01:25 PM Revision b0485dd8 (cdmlib): #3948 first step, if a taxon is used in a polytomous key, the taxonNode will be deleted, but the taxon will not be removed.
Katja Luther
12:45 PM Revision 2985591f (taxeditor): workaround for release 3.3.0 related to ticket 3828 forcing SHOULD_CONNECT_AT_STARTUP to always be false.
Cherian Mathew
11:04 AM Revision c0ab9eed (cdmlib): again bugfix for DNA URLs
Andreas Müller
09:58 AM Revision 304ab1e5 (cdmlib): committing merge
Ayco Hollemann
08:36 AM Revision 5821101b (taxeditor): - fixed potential NPEs in Amplification DetailsView
Patrick Plitzner

01/13/2014

05:48 PM Revision 816af8a7 (cdmlib): NPE bugfix in Specimen import
Andreas Müller
04:55 PM Revision ad8e1354 (taxeditor): committed changes from trunk to local branch after merge
Ayco Hollemann
04:52 PM Revision de6b48ae (taxeditor): Merged changes in TaxeditorEditorPlugin.java from trunk and validation branch
Ayco Hollemann
04:24 PM Revision b8f2227c (cdmlib): fix bug for getBoldUri
Andreas Müller
03:59 PM Revision d6e26456 (cdmlib): revert boolean to non ''. Still needs more work for PostgreSQL
Patrick Plitzner
03:58 PM Revision 16313054 (cdmlib): camelCase issues #3682 (tested with old campanula database)
Patrick Plitzner
03:31 PM Revision 2a664d7b (cdmlib): changes java doc comment
Alexander Oppermann
02:13 PM Revision eac42f09 (cdmlib): remove some javadoc
Andreas Müller
02:04 PM Revision 357c4764 (cdmlib): Datasource changes
Andreas Müller
10:19 AM Revision 7da62c29 (cdmlib): merge pom
Andreas Müller
09:42 AM Revision c9e318c4 (taxeditor): basic frontend infrastructure for validation framework
Ayco Hollemann
08:53 AM Revision c27998d8 (taxeditor): - added reference collection section to Sequence DetailsView
- implemented handleEvent() for some DetailsViews Patrick Plitzner
 

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