Activity
From 12/28/2013 to 01/26/2014
01/24/2014
- 04:57 PM Revision f3a06275 (cdmlib): try to fix ConcurrentModification Exception in removeNameRelationshipByDeleteConfig
- 03:50 PM Revision 1f6e6fdc (cdmlib): making boolean methods in TaggedText all Transient #3991
- 02:48 PM task #3996 (Rejected): [Overview] Algaterra search functionality
- see attached document
- 02:15 PM feature request #3994 (Closed): Select widget to choose the filter areas for the advanced search
- Currently only the NamedAreas in use are shown in a simple checkboxlist. This needs to be improved.
Requirements... - 01:59 PM Revision 65412c98 (taxeditor): Snapshot branch for version 3.3.1-SNAPSHOT
- 01:59 PM Revision f6926ee9 (taxeditor): Updated version in config files to 3.3.1-SNAPSHOT
- 11:25 AM bug #3992: [CHECK] Use last scrutiny instead of sec reference
- Hallo,
Ich erinnere mich, dass es einen wichtigen Grund gab, warum wir sec. Referenz und last scrutiny getrennt ... - 11:15 AM bug #3992 (Resolved): [CHECK] Use last scrutiny instead of sec reference
- In E+M the last scrutiny field may better represent the meaning of the secundum reference than the PTRefFK field does...
- 11:25 AM feature request #3990: [DISCUSS] How to implement citation suggestion to each taxon
- Anton:
Hallo,
Ich erinnere mich, dass es einen wichtigen Grund gab, warum wir sec. Referenz und last scrutiny ... - 11:24 AM feature request #3990: [DISCUSS] How to implement citation suggestion to each taxon
- NOTE:
Maybe the current imports do not yet reflect the above described situation correctly and do still fill the Ta... - 11:02 AM feature request #3990: [DISCUSS] How to implement citation suggestion to each taxon
- Hi Eckhard,
richtig, im Berlin Model / E+M Version wird das wie ich finde ein bischen seltsam und redundant gehande... - 10:38 AM feature request #3990: [DISCUSS] How to implement citation suggestion to each taxon
- Maybe the source field can be filled by the sec reference information of each taxon.
- 10:37 AM feature request #3990: [DISCUSS] How to implement citation suggestion to each taxon
- Hi Eckhard,
can you please let us know where this information is exactly stored in the Berlin Model for the family ... - 11:04 AM feature request #3989: [DISCUSS] Allow defining the vocabularies to be offered in the select dialogs
- The arrow button in the upper right corner already allows filtering in theory, but this functionality currently doesn...
- 09:59 AM Revision e637d415 (cdmlib): restructering packet for reintegration
- *fixed save error which seems to occur totally radomly
*fixed vaadin:compile error
*fixed build path in pom file
01/23/2014
- 06:13 PM feature request #3990 (Closed): [DISCUSS] How to implement citation suggestion to each taxon
- ... and implement data part.
In the original EuroPlusMed portal on each taxon page a citation string labeled _Sour... - 06:03 PM feature request #3989 (Resolved): [DISCUSS] Allow defining the vocabularies to be offered in the select dialogs
- When entering distributions selecting an NamedArea can be cumbersome if multiple parallel vocabularies exist which ha...
- 05:55 PM feature request #3907: EuroMed: implement condensed "status" string of distribution information
- the condensed "status" string should be created in the cdmlib-service
also think about creating a combined REST ser... - 04:36 PM Revision f9c89f4d (cdmlib): commit merge
- 04:32 PM Revision 98bfef31 (taxeditor): commit merge
- 04:19 PM Revision ac512c2f (cdmlib): committing merge
- 04:17 PM Revision db468f2d (cdmlib): Created listener stubs for validation
01/22/2014
- 04:28 PM Revision bf61d25f (taxeditor): - removed specific source code path
- 10:57 AM Revision 50e76759 (taxeditor): merged campanula branch to trunk. Main features are: BioCase Query via Imports, Derivate Search View, Derivate (Hierarchy) View, Derivate perspective, type-specific DetailsViews for specimens
- 09:54 AM feature request #3983: [DISCUSS] Easier reference selection - Euro+Med sourceID
- Hallo Andreas,
Andreas und ich haben uns gerade gefragt, wo beim Import die Reference-Codes für Literatur (z.B. fü... - 09:46 AM feature request #3983 (Duplicate): [DISCUSS] Easier reference selection - Euro+Med sourceID
- Hallo,
bei der Angabe von Referenzen zum Beispiel von Verbreitungsdaten bräuchten wir in Euro+Med einige Erleic... - 09:48 AM feature request #3984 (Closed): Easier reference selection - recently used references
- ERS:
bei der Angabe von Referenzen zum Beispiel von Verbreitungsdaten bräuchten wir in Euro+Med einige Erleichter...
01/21/2014
- 06:50 PM task #3560: Withheld unpublished taxa from webservice used in E+M dataportal
- This must be implemented at the persistence level
* TaxonDao
* SpecimenDao
* Search functions
can we use Hiber... - 04:03 PM Revision 57c74c0d (taxeditor): merge-update from trunk
- 03:52 PM Revision 37167c98 (taxeditor): - added AbstractUnboundEntityCollectionSection which allows adding elements to collection sections without adding them to the model object
- 01:57 PM Revision 7676d726 (cdmlib): committed merge
- 01:27 PM feature request #3982 (New): Update name in source data when moving a Description to another Taxon
- This is related to #3791: Implement operation to move a Description to another Taxon and will be an analogous impleme...
- 01:23 PM feature request #3907: EuroMed: implement condensed "status" string of distribution information
- moving open tickets back to original milestone
- 01:23 PM bug #3804: E+M import Person titles contain Object.toSting() representations
- moving open tickets back to original milestone
- 01:23 PM bug #3788: sort order of search results broken in free-text taxon search
- moving open tickets back to original milestone
- 09:34 AM Revision 65f79ee6 (taxeditor): merge-update from trunk
- 09:33 AM Revision 05e64466 (taxeditor): - added cdmlib sources
- 09:30 AM Revision 27318d2d (taxeditor): - partly fixed sequence reference collection section
01/20/2014
- 05:45 PM feature request #2625 (Resolved): [E+M Overview] Data aggregation functionalities for E+M (TransmissionEngine)
- as far as I remember this is ticket is completed and can now be reviewed
- 05:07 PM feature request #2625: [E+M Overview] Data aggregation functionalities for E+M (TransmissionEngine)
- adding text of email discussion on how to treat references in the transmission engine: attachment:Discussion-Transmis...
- 05:16 PM task #3978 (Closed): Specimenview path: Compact representation of exactLocation
- Hallo Andreas,
Bei der Specimenanzeige gäbe es glaube ich noch einige einfache Verbesserungsmöglichkeiten.
... - 04:48 PM Revision a537f285 (cdmlib): fixing hibernate search annotation
- 03:57 PM Revision 87924e53 (taxeditor): - added java package for different occurrence/specimen types
- - moved "show field unit" option to "Bulk Editor" preference page
- added preference to show only type-specific deta... - 03:19 PM feature request #3904: EuroMed: Implement filtering rules for distributions
- third rule is also implemented: r19733
now we only need a unit test for this
- 09:58 AM Revision c167b004 (taxeditor): merge-update fixes
- 09:51 AM Revision 59608b88 (taxeditor): merge-update from trunk
- 09:12 AM Revision 67ebf787 (taxeditor): - added separate section for primer and cloning
- - removed "null" message in data source conversion dialog
01/19/2014
01/17/2014
- 03:20 PM Revision 2990a1b0 (cdm-dataportal): prohibit select elements from overflowing the parent container
01/16/2014
- 03:34 PM feature request #3907: EuroMed: implement condensed "status" string of distribution information
- moving resolved tickets to release milestone
- 03:33 PM bug #3804: E+M import Person titles contain Object.toSting() representations
- moving resolved tickets to release milestone
- 03:33 PM bug #3788: sort order of search results broken in free-text taxon search
- moving resolved tickets to release milestone
- 03:33 PM feature request #3472: Update name in source data when changing an accepted taxon into a synonym
- moving resolved tickets to release milestone
- 03:33 PM feature request #2854: Implement part of other title for part of articles and part of booksections
- moving resolved tickets to release milestone
- 11:57 AM Revision b7bc23f3 (cdmlib): debug unecessary taxonnode proibio
- 11:09 AM Revision 038b0c30 (cdm-server): documentation the the UI
- 10:41 AM Revision 43251923 (cdm-dataportal): hotfix to loosen hard dependency from devel module
- 10:14 AM Revision 897d0d02 (taxeditor): Updated version in config files to 3.3.0
- 10:12 AM Revision f6181d2d (cdmlib-apps): update poms for app-import
- 10:11 AM Revision 1bb9b70a (cdmlib-apps): update poms for eflora and pesi
- 08:08 AM Revision 11172412 (cdm-server): fixing version number, setting it to 3.3.1-SNAPSHOT
- 07:46 AM Revision 551bf0bc (cdmlib): fixing versions numbers, setting them to 3.3.1-SNAPSHOT
01/15/2014
- 09:50 PM feature request #3972 (Closed): Strictly validate username to not null and not empty
- see also #3826
- 09:13 PM task #3603: Remove creation of dummy DefinedTerm when creating new Term related entities
- > Scope section of the DetailsViewer for a Description
When I try to create ANY scope here I always get a red scree... - 08:58 PM feature request #3561 (Closed): Implement editing for abbreviated title
- 07:34 PM task #3967 (Duplicate): Rethink original spelling strategy
- see #2874
Original spelling was implemented as a name relationship. This is critical from a performance point of... - 07:21 PM feature request #2975 (Closed): Add noDataStatus to descriptive data (QuantitativeData and CategoricalData)
- 06:45 PM Revision 44712e0c (cdm-dataportal): branch for drupal themes 3.3
- 06:42 PM Revision 3dc9206d (cdm-server): [maven-release-plugin] prepare for next development iteration
- 06:42 PM Revision b00018fa (cdm-server): [maven-release-plugin] prepare release cdm-server-3.3
- 06:34 PM Revision 46dc7956 (cdm-server): [maven-release-plugin] prepare for next development iteration
- 06:34 PM Revision b2192d8e (cdm-server): [maven-release-plugin] prepare release cdm-server-3.3
- 06:20 PM feature request #3816: Create "Undefined" status and choose it for NULL status
- moving unresolved tickets to next release milestone due release of version 3.3
- 06:20 PM feature request #3580: Write permission error with temporary cdmserver echache dir
- moving unresolved tickets to next release milestone due release of version 3.3
- 06:20 PM feature request #3465: Function to copy secundum reference of a given taxon node to all it's children
- moving unresolved tickets to next release milestone due release of version 3.3
- 06:20 PM task #3408: replace spring-modules-cache by up to date implementation
- moving unresolved tickets to next release milestone due release of version 3.3
- 06:20 PM feature request #3362: Enabling sound files (mp3) in EDITor and data portal
- moving unresolved tickets to next release milestone due release of version 3.3
- 06:20 PM feature request #3133: security: preparation and first steps for Role, CdmAuthority and GrantedAuthorityImpl implement GrantedAuthority
- moving unresolved tickets to next release milestone due release of version 3.3
- 06:20 PM bug #3098: CdmPermissionEvaluator can test for multiple permissions
- moving unresolved tickets to next release milestone due release of version 3.3
- 06:20 PM bug #2939: ehcache diskStore conflict?
- moving unresolved tickets to next release milestone due release of version 3.3
- 06:20 PM task #2501: Remove redundant SDD import class
- moving unresolved tickets to next release milestone due release of version 3.3
- 06:18 PM Revision a07f89f1 (cdmlib): [maven-release-plugin] prepare for next development iteration
- 06:18 PM Revision b897cc4f (cdmlib): [maven-release-plugin] prepare release cdmlib-parent-3.3
- 05:44 PM Revision 6b5ba3cc (cdmlib): adapting method to new classification structure
- 05:03 PM Revision 5b16dccb (cdmlib): adapting method to new classification structure
- 04:39 PM Revision 5b91e2b0 (cdmlib): adapting method to new classification structure
- 03:26 PM Revision 3f6e7646 (cdmlib): adapting method to new classification structure
- 02:21 PM Revision 1b880bc7 (cdmlib): adapting method to new classification structure
- 01:42 PM Revision bf10df38 (cdmlib): fix stupid bug in SimpleSchemaUpdater
- 12:54 PM Revision dcc34109 (cdmlib): ICdmGenericDao / CdmGenericDaoImpl / ICommonService / CommonServiceImpl : added initializeCollection method
- LTWLazyLoadingTest / LTWLazyLoadingTest.xml : moved test class
CdmLazyLoader : added functionality for collections
ao... - 12:54 PM Revision 856a4fee (cdmlib): fixing problems related to new taxon node structure
- 12:18 PM Revision 43bf99f8 (cdmlib): handling of maxId of TaxonNode for empty databases
- 12:17 PM Revision 57385c37 (cdmlib): remove some TODOs
- 11:54 AM Revision d87c8053 (taxeditor): - updated "update datasource" message popup
- 11:32 AM Revision 476c8879 (cdmlib): adding element to init strategy for classification children
- 09:07 AM Revision ba9e85b1 (taxeditor): - updated "update datasource" message popup
- 01:11 AM Revision bc6b6a1a (cdmlib-apps): Update eflora destinations
- 01:06 AM Revision a9fb2e4d (cdmlib): doc
01/14/2014
- 11:18 PM Revision f1b1b1e7 (taxeditor): fix missing publish flag for synonyms
- 10:42 PM feature request #3958 (Closed): Handle CDMPreference table
- It is implemented in model but not yet used and not filled with any data. Methods in Service layer are also missing.
... - 10:33 PM bug #3658 (New): Update Nomenclatural code for datasources
- 10:30 PM feature request #3955 (New): Are TermVocabularies URIs needed
- We do now have uri and a termSourceUri. Are both needed
- 10:08 PM Revision acfdcc30 (cdmlib): remove publish marker from synonyms #3883
- 09:57 PM Revision bda16fe3 (cdmlib): removed tissue as kindOfUnit
- 09:52 PM Revision c2e16ab6 (cdmlib): update vocabulary titleCaches, untested #3708
- 09:41 PM Revision 30c8f3d6 (cdmlib): remove uri from feature tree #3519
- 09:33 PM feature request #2975 (Resolved): Add noDataStatus to descriptive data (QuantitativeData and CategoricalData)
- implemented r19853, r19854, r19855
- 01:14 PM feature request #2975 (In Progress): Add noDataStatus to descriptive data (QuantitativeData and CategoricalData)
- 09:31 PM Revision b54dcf8d (cdmlib): update test scripts for unknownData flag #2975
- 09:28 PM Revision 6f00d6f6 (cdmlib): add unknownData to structured descriptive data #2975
- 09:27 PM Revision 78b8f14a (cdmlib): add unknownData to structured descriptive data #2975
- 09:13 PM Revision 56b7aaeb (cdmlib): fix boolean value bug for Postgres and maybe H2
- 08:50 PM Revision 46008e60 (cdmlib): schema update to 3.3.1
- 07:50 PM Revision 9f85d9e1 (cdmlib): synchronize test datastructure
- 07:36 PM Revision cf979fb7 (cdmlib): minor
- 07:36 PM Revision ed5a46f7 (cdmlib): fix taxon service search test
- 07:35 PM Revision 43477a55 (cdmlib): fix taxon service search test
- 07:19 PM Revision 5a271454 (cdmlib): fixing 2 tests for the new classification structure
- 06:07 PM Revision 5d00156f (cdmlib): Fixing some test for new Classification structure in cdmlib-model
- 05:15 PM Revision b46dec0a (taxeditor): merge-update from trunk
- 05:01 PM Revision 0ee651f8 (taxeditor): fix for #3557
- - reactivated details view for taxon relationships
- added doubtful flag - 03:49 PM Revision 114337dc (cdmlib)
- 03:47 PM Revision c93bf342 (cdmlib): rootNode adaption for classification
- 03:34 PM Revision 3546c691 (taxeditor): - also allow *.xlsx and *.* for Excel import (fixes #3657)
- 03:06 PM Revision 0e671716 (taxeditor): - set recordBasis according to selecting in context menu (fixes #3753)
- 02:10 PM Revision 9d9feae4 (cdmlib): - made default constructor public to avoid an InstantiationException (see https://stackoverflow.com/questions/7273125/hibernate-envers-and-javassist-enhancement-failed-exception)
- 01:41 PM task #3603 (Resolved): Remove creation of dummy DefinedTerm when creating new Term related entities
- 01:31 PM Revision fad47a04 (taxeditor): change ICBN to ICNAFP in manual #3745
- 01:25 PM Revision b0485dd8 (cdmlib): #3948 first step, if a taxon is used in a polytomous key, the taxonNode will be deleted, but the taxon will not be removed.
- 12:45 PM Revision 2985591f (taxeditor): workaround for release 3.3.0 related to ticket 3828 forcing SHOULD_CONNECT_AT_STARTUP to always be false.
- 11:04 AM Revision c0ab9eed (cdmlib): again bugfix for DNA URLs
- 09:58 AM Revision 304ab1e5 (cdmlib): committing merge
- 08:36 AM Revision 5821101b (taxeditor): - fixed potential NPEs in Amplification DetailsView
01/13/2014
- 05:48 PM Revision 816af8a7 (cdmlib): NPE bugfix in Specimen import
- 04:55 PM Revision ad8e1354 (taxeditor): committed changes from trunk to local branch after merge
- 04:52 PM Revision de6b48ae (taxeditor): Merged changes in TaxeditorEditorPlugin.java from trunk and validation branch
- 04:24 PM Revision b8f2227c (cdmlib): fix bug for getBoldUri
- 03:59 PM Revision d6e26456 (cdmlib): revert boolean to non ''. Still needs more work for PostgreSQL
- 03:58 PM Revision 16313054 (cdmlib): camelCase issues #3682 (tested with old campanula database)
- 03:31 PM Revision 2a664d7b (cdmlib): changes java doc comment
- 02:13 PM Revision eac42f09 (cdmlib): remove some javadoc
- 02:04 PM Revision 357c4764 (cdmlib): Datasource changes
- 10:19 AM Revision 7da62c29 (cdmlib): merge pom
- 09:42 AM Revision c9e318c4 (taxeditor): basic frontend infrastructure for validation framework
- 08:53 AM Revision c27998d8 (taxeditor): - added reference collection section to Sequence DetailsView
- - implemented handleEvent() for some DetailsViews
01/09/2014
- 05:03 PM Revision 80a43971 (cdmlib): changes for update postgres databases
- 03:45 PM feature request #461: Improve / compact display of types
- formatting rules as suggested by Thomas Janßen:
Sortierung:
1. Status der Typen: a) holo, lecto, neo, syn, b) epi,... - 03:24 PM feature request #461: Improve / compact display of types
- new input on this topic from Thomas Janßen regarding the Flore d'Afrique Central portal:
Hallo Andreas,
wie geste... - 03:34 PM Revision 8ec2dcf8 (cdmlib): remove alias for GatheringEvent Update
- 02:25 PM Revision 7747019c (cdmlib): add Case handling for update scripts #3682
- 10:34 AM Revision 205bb92b (cdmlib): Merge with trunk
- 10:23 AM Revision 2e30f0b3 (cdmlib): added delete function for example data...
01/08/2014
- 05:32 PM Revision c3efc10a (taxeditor): merge-update from trunk
- 05:13 PM Revision e3f81136 (taxeditor): - added startNumber to PolytomousKey DetailsView (fixes #3563)
- 04:33 PM Revision 7b9102df (taxeditor): - added idInVocabulary to DefinedTerm DetailsView (#3542)
- 03:08 PM Revision 9ace5c9d (taxeditor): added hardcoded base layer "earth" (#3941)
- 03:07 PM Revision f0f92089 (taxeditor): changed tooltip to "factual data"
- 11:06 AM Revision bec9366a (cdmlib): commit taxonx2013 changes
- 11:05 AM Revision 4abd7347 (cdmlib): update app-import launcher
- 11:02 AM Revision fa69e58f (taxeditor): - changed default map service access point (fixes #3941)
01/07/2014
- 06:30 PM Revision 838323c5 (cdmlib): merged from trunk
- 06:23 PM Revision 95a77712 (cdmlib): added aspectj jars
- 06:21 PM Revision 62283dbc (cdmlib): TestLTWLazyLoading : test class for testing the Aspetcj ltw approach
- applicationContext-ltw-test.xml : ltw specific application context
LTWLazyLoadingTest.xml : data for ltw testing
CdmL... - 05:00 PM Revision 0584e0a3 (cdmlib-apps): Salvador destination
- 04:59 PM Revision 70bbf45c (cdmlib-apps): minor
- 04:58 PM Revision 005c79ad (cdmlib): add Salvador markers to BM import
- 01:24 PM bug #3933: the search result list should contain bastards in alphabetical order
- Replying to [[comment1|k.luther]]:
> the order of search results is based on the atomised data, names with a bastard... - 10:42 AM bug #3933: the search result list should contain bastards in alphabetical order
- the order of search results is based on the atomised data, names with a bastard formula are not atomised therefore th...
- 09:29 AM bug #3933 (Duplicate): the search result list should contain bastards in alphabetical order
- mail von Ralf:
Hat ein Bastard noch kein gültiges Binom, gebe ich die Bastardformel ein. So weit, so gut, aber b... - 12:19 PM Revision 49bb5bb4 (taxeditor)
- 09:00 AM Revision 2f08d101 (taxeditor): - added elements for Sequence/Amplification/SingleRead DetailsView
01/06/2014
- 06:11 PM Revision 76df60c8 (cdmlib-apps): remove imports
- 06:10 PM Revision eeba57bc (cdmlib-apps): fix WebMarker import for BerlinModel
- 05:49 PM Revision 4d6286a3 (taxeditor): - added reference selection to Sequence DetailsView
- 05:38 PM Revision 443093f8 (cdmlib-apps): fix test source
- 05:36 PM Revision 08cc3012 (cdmlib-apps): bugfix for validating synonyms accepted taxa in synonym relations
- 05:35 PM Revision 6460df89 (cdmlib-apps): bugfix for integer facts
- 03:36 PM Revision 4dab7e05 (taxeditor): - added element for Sequence DetailsView
- 03:35 PM Revision 8019d634 (cdmlib-apps): minor
- 01:36 PM Revision dd8c8181 (taxeditor): - added support for creating and viewing SingleReads in DerivateView
- - added DetailsViews for SingleReads
- 01:18 PM Revision 08cb3227 (cdmlib-apps): message handling for name relationships
- 01:15 PM Revision eb27ca9d (cdmlib-apps): update salvador source
- 01:01 PM Revision cc9764b1 (cdmlib): added a test for removeTaxonBase in testChangeSynonymToRelatedTaxon()
- 10:56 AM Revision 72ee2e9f (taxeditor): merge-update from trunk
- 10:50 AM Revision 238441fa (taxeditor): - added Amplification and Sequence to DerivateView
- - added context menu entry for the creation of both
- added DetailsViews for both
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