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From 12/17/2013 to 01/15/2014

01/15/2014

09:50 PM feature request #3972 (Closed): Strictly validate username to not null and not empty
see also #3826
Andreas Müller
09:13 PM task #3603: Remove creation of dummy DefinedTerm when creating new Term related entities
> Scope section of the DetailsViewer for a Description
When I try to create ANY scope here I always get a red scree...
Andreas Müller
08:58 PM feature request #3561 (Closed): Implement editing for abbreviated title
Andreas Müller
07:34 PM task #3967 (Duplicate): Rethink original spelling strategy
see #2874
Original spelling was implemented as a name relationship. This is critical from a performance point of...
Andreas Müller
07:21 PM feature request #2975 (Closed): Add noDataStatus to descriptive data (QuantitativeData and CategoricalData)
Andreas Müller
06:45 PM Revision 44712e0c (cdm-dataportal): branch for drupal themes 3.3
edit-jenkins
06:42 PM Revision 3dc9206d (cdm-server): [maven-release-plugin] prepare for next development iteration
edit-jenkins
06:42 PM Revision b00018fa (cdm-server): [maven-release-plugin] prepare release cdm-server-3.3
edit-jenkins
06:34 PM Revision 46dc7956 (cdm-server): [maven-release-plugin] prepare for next development iteration
edit-jenkins
06:34 PM Revision b2192d8e (cdm-server): [maven-release-plugin] prepare release cdm-server-3.3
edit-jenkins
06:20 PM feature request #3816: Create "Undefined" status and choose it for NULL status
moving unresolved tickets to next release milestone due release of version 3.3
Andreas Kohlbecker
06:20 PM feature request #3580: Write permission error with temporary cdmserver echache dir
moving unresolved tickets to next release milestone due release of version 3.3
Andreas Kohlbecker
06:20 PM feature request #3465: Function to copy secundum reference of a given taxon node to all it's children
moving unresolved tickets to next release milestone due release of version 3.3
Andreas Kohlbecker
06:20 PM task #3408: replace spring-modules-cache by up to date implementation
moving unresolved tickets to next release milestone due release of version 3.3
Andreas Kohlbecker
06:20 PM feature request #3362: Enabling sound files (mp3) in EDITor and data portal
moving unresolved tickets to next release milestone due release of version 3.3
Andreas Kohlbecker
06:20 PM feature request #3133: security: preparation and first steps for Role, CdmAuthority and GrantedAuthorityImpl implement GrantedAuthority
moving unresolved tickets to next release milestone due release of version 3.3
Andreas Kohlbecker
06:20 PM bug #3098: CdmPermissionEvaluator can test for multiple permissions
moving unresolved tickets to next release milestone due release of version 3.3
Andreas Kohlbecker
06:20 PM bug #2939: ehcache diskStore conflict?
moving unresolved tickets to next release milestone due release of version 3.3
Andreas Kohlbecker
06:20 PM task #2501: Remove redundant SDD import class
moving unresolved tickets to next release milestone due release of version 3.3
Andreas Kohlbecker
06:18 PM Revision a07f89f1 (cdmlib): [maven-release-plugin] prepare for next development iteration
edit-jenkins
06:18 PM Revision b897cc4f (cdmlib): [maven-release-plugin] prepare release cdmlib-parent-3.3
edit-jenkins
05:44 PM Revision 6b5ba3cc (cdmlib): adapting method to new classification structure
Andreas Kohlbecker
05:03 PM Revision 5b16dccb (cdmlib): adapting method to new classification structure
Andreas Kohlbecker
04:39 PM Revision 5b91e2b0 (cdmlib): adapting method to new classification structure
Andreas Kohlbecker
03:26 PM Revision 3f6e7646 (cdmlib): adapting method to new classification structure
Andreas Kohlbecker
02:21 PM Revision 1b880bc7 (cdmlib): adapting method to new classification structure
Andreas Kohlbecker
01:42 PM Revision bf10df38 (cdmlib): fix stupid bug in SimpleSchemaUpdater
Andreas Müller
12:54 PM Revision dcc34109 (cdmlib): ICdmGenericDao / CdmGenericDaoImpl / ICommonService / CommonServiceImpl : added initializeCollection method
LTWLazyLoadingTest / LTWLazyLoadingTest.xml : moved test class
CdmLazyLoader : added functionality for collections
ao...
Cherian Mathew
12:54 PM Revision 856a4fee (cdmlib): fixing problems related to new taxon node structure
Andreas Kohlbecker
12:18 PM Revision 43bf99f8 (cdmlib): handling of maxId of TaxonNode for empty databases
Andreas Müller
12:17 PM Revision 57385c37 (cdmlib): remove some TODOs
Andreas Müller
11:54 AM Revision d87c8053 (taxeditor): - updated "update datasource" message popup
Patrick Plitzner
11:32 AM Revision 476c8879 (cdmlib): adding element to init strategy for classification children
Andreas Kohlbecker
09:07 AM Revision ba9e85b1 (taxeditor): - updated "update datasource" message popup
Patrick Plitzner
01:11 AM Revision bc6b6a1a (cdmlib-apps): Update eflora destinations
Andreas Müller
01:06 AM Revision a9fb2e4d (cdmlib): doc
Andreas Müller

01/14/2014

11:18 PM Revision f1b1b1e7 (taxeditor): fix missing publish flag for synonyms
Andreas Müller
10:42 PM feature request #3958 (Closed): Handle CDMPreference table
It is implemented in model but not yet used and not filled with any data. Methods in Service layer are also missing.
...
Andreas Müller
10:33 PM bug #3658 (New): Update Nomenclatural code for datasources
Andreas Müller
10:30 PM feature request #3955 (New): Are TermVocabularies URIs needed
We do now have uri and a termSourceUri. Are both needed
Andreas Müller
10:08 PM Revision acfdcc30 (cdmlib): remove publish marker from synonyms #3883
Andreas Müller
09:57 PM Revision bda16fe3 (cdmlib): removed tissue as kindOfUnit
Andreas Müller
09:52 PM Revision c2e16ab6 (cdmlib): update vocabulary titleCaches, untested #3708
Andreas Müller
09:41 PM Revision 30c8f3d6 (cdmlib): remove uri from feature tree #3519
Andreas Müller
09:33 PM feature request #2975 (Resolved): Add noDataStatus to descriptive data (QuantitativeData and CategoricalData)
implemented r19853, r19854, r19855
Andreas Müller
01:14 PM feature request #2975 (In Progress): Add noDataStatus to descriptive data (QuantitativeData and CategoricalData)
Andreas Müller
09:31 PM Revision b54dcf8d (cdmlib): update test scripts for unknownData flag #2975
Andreas Müller
09:28 PM Revision 6f00d6f6 (cdmlib): add unknownData to structured descriptive data #2975
Andreas Müller
09:27 PM Revision 78b8f14a (cdmlib): add unknownData to structured descriptive data #2975
Andreas Müller
09:13 PM Revision 56b7aaeb (cdmlib): fix boolean value bug for Postgres and maybe H2
Andreas Müller
08:50 PM Revision 46008e60 (cdmlib): schema update to 3.3.1
Andreas Müller
07:50 PM Revision 9f85d9e1 (cdmlib): synchronize test datastructure
Andreas Müller
07:36 PM Revision cf979fb7 (cdmlib): minor
Andreas Müller
07:36 PM Revision ed5a46f7 (cdmlib): fix taxon service search test
Andreas Müller
07:35 PM Revision 43477a55 (cdmlib): fix taxon service search test
Andreas Müller
07:19 PM Revision 5a271454 (cdmlib): fixing 2 tests for the new classification structure
Andreas Müller
06:07 PM Revision 5d00156f (cdmlib): Fixing some test for new Classification structure in cdmlib-model
Andreas Müller
05:15 PM Revision b46dec0a (taxeditor): merge-update from trunk
Patrick Plitzner
05:01 PM Revision 0ee651f8 (taxeditor): fix for #3557
- reactivated details view for taxon relationships
- added doubtful flag
Patrick Plitzner
03:49 PM Revision 114337dc (cdmlib)
Katja Luther
03:47 PM Revision c93bf342 (cdmlib): rootNode adaption for classification
Katja Luther
03:34 PM Revision 3546c691 (taxeditor): - also allow *.xlsx and *.* for Excel import (fixes #3657)
Patrick Plitzner
03:06 PM Revision 0e671716 (taxeditor): - set recordBasis according to selecting in context menu (fixes #3753)
Patrick Plitzner
02:10 PM Revision 9d9feae4 (cdmlib): - made default constructor public to avoid an InstantiationException (see https://stackoverflow.com/questions/7273125/hibernate-envers-and-javassist-enhancement-failed-exception)
Patrick Plitzner
01:41 PM task #3603 (Resolved): Remove creation of dummy DefinedTerm when creating new Term related entities
Cherian Mathew
01:31 PM Revision fad47a04 (taxeditor): change ICBN to ICNAFP in manual #3745
Andreas Müller
01:25 PM Revision b0485dd8 (cdmlib): #3948 first step, if a taxon is used in a polytomous key, the taxonNode will be deleted, but the taxon will not be removed.
Katja Luther
12:45 PM Revision 2985591f (taxeditor): workaround for release 3.3.0 related to ticket 3828 forcing SHOULD_CONNECT_AT_STARTUP to always be false.
Cherian Mathew
11:04 AM Revision c0ab9eed (cdmlib): again bugfix for DNA URLs
Andreas Müller
09:58 AM Revision 304ab1e5 (cdmlib): committing merge
Ayco Hollemann
08:36 AM Revision 5821101b (taxeditor): - fixed potential NPEs in Amplification DetailsView
Patrick Plitzner

01/13/2014

05:48 PM Revision 816af8a7 (cdmlib): NPE bugfix in Specimen import
Andreas Müller
04:55 PM Revision ad8e1354 (taxeditor): committed changes from trunk to local branch after merge
Ayco Hollemann
04:52 PM Revision de6b48ae (taxeditor): Merged changes in TaxeditorEditorPlugin.java from trunk and validation branch
Ayco Hollemann
04:24 PM Revision b8f2227c (cdmlib): fix bug for getBoldUri
Andreas Müller
03:59 PM Revision d6e26456 (cdmlib): revert boolean to non ''. Still needs more work for PostgreSQL
Patrick Plitzner
03:58 PM Revision 16313054 (cdmlib): camelCase issues #3682 (tested with old campanula database)
Patrick Plitzner
03:31 PM Revision 2a664d7b (cdmlib): changes java doc comment
Alexander Oppermann
02:13 PM Revision eac42f09 (cdmlib): remove some javadoc
Andreas Müller
02:04 PM Revision 357c4764 (cdmlib): Datasource changes
Andreas Müller
10:19 AM Revision 7da62c29 (cdmlib): merge pom
Andreas Müller
09:42 AM Revision c9e318c4 (taxeditor): basic frontend infrastructure for validation framework
Ayco Hollemann
08:53 AM Revision c27998d8 (taxeditor): - added reference collection section to Sequence DetailsView
- implemented handleEvent() for some DetailsViews Patrick Plitzner

01/09/2014

05:03 PM Revision 80a43971 (cdmlib): changes for update postgres databases
Katja Luther
03:45 PM feature request #461: Improve / compact display of types
formatting rules as suggested by Thomas Janßen:
Sortierung:
1. Status der Typen: a) holo, lecto, neo, syn, b) epi,...
Andreas Kohlbecker
03:24 PM feature request #461: Improve / compact display of types
new input on this topic from Thomas Janßen regarding the Flore d'Afrique Central portal:
Hallo Andreas,
wie geste...
Andreas Kohlbecker
03:34 PM Revision 8ec2dcf8 (cdmlib): remove alias for GatheringEvent Update
Katja Luther
02:25 PM Revision 7747019c (cdmlib): add Case handling for update scripts #3682
Andreas Müller
10:34 AM Revision 205bb92b (cdmlib): Merge with trunk
Alexander Oppermann
10:23 AM Revision 2e30f0b3 (cdmlib): added delete function for example data...
Alexander Oppermann

01/08/2014

05:32 PM Revision c3efc10a (taxeditor): merge-update from trunk
Patrick Plitzner
05:13 PM Revision e3f81136 (taxeditor): - added startNumber to PolytomousKey DetailsView (fixes #3563)
Patrick Plitzner
04:33 PM Revision 7b9102df (taxeditor): - added idInVocabulary to DefinedTerm DetailsView (#3542)
Patrick Plitzner
03:08 PM Revision 9ace5c9d (taxeditor): added hardcoded base layer "earth" (#3941)
Patrick Plitzner
03:07 PM Revision f0f92089 (taxeditor): changed tooltip to "factual data"
Patrick Plitzner
11:06 AM Revision bec9366a (cdmlib): commit taxonx2013 changes
Patricia Kelbert
11:05 AM Revision 4abd7347 (cdmlib): update app-import launcher
Patricia Kelbert
11:02 AM Revision fa69e58f (taxeditor): - changed default map service access point (fixes #3941)
Patrick Plitzner

01/07/2014

06:30 PM Revision 838323c5 (cdmlib): merged from trunk
Cherian Mathew
06:23 PM Revision 95a77712 (cdmlib): added aspectj jars
Cherian Mathew
06:21 PM Revision 62283dbc (cdmlib): TestLTWLazyLoading : test class for testing the Aspetcj ltw approach
applicationContext-ltw-test.xml : ltw specific application context
LTWLazyLoadingTest.xml : data for ltw testing
CdmL...
Cherian Mathew
05:00 PM Revision 0584e0a3 (cdmlib-apps): Salvador destination
Andreas Müller
04:59 PM Revision 70bbf45c (cdmlib-apps): minor
Andreas Müller
04:58 PM Revision 005c79ad (cdmlib): add Salvador markers to BM import
Andreas Müller
01:24 PM bug #3933: the search result list should contain bastards in alphabetical order
Replying to [[comment1|k.luther]]:
> the order of search results is based on the atomised data, names with a bastard...
Andreas Müller
10:42 AM bug #3933: the search result list should contain bastards in alphabetical order
the order of search results is based on the atomised data, names with a bastard formula are not atomised therefore th... Katja Luther
09:29 AM bug #3933 (Duplicate): the search result list should contain bastards in alphabetical order
mail von Ralf:
Hat ein Bastard noch kein gültiges Binom, gebe ich die Bastardformel ein. So weit, so gut, aber b...
Katja Luther
12:19 PM Revision 49bb5bb4 (taxeditor)
Ayco Hollemann
09:00 AM Revision 2f08d101 (taxeditor): - added elements for Sequence/Amplification/SingleRead DetailsView
Patrick Plitzner

01/06/2014

06:11 PM Revision 76df60c8 (cdmlib-apps): remove imports
Andreas Müller
06:10 PM Revision eeba57bc (cdmlib-apps): fix WebMarker import for BerlinModel
Andreas Müller
05:49 PM Revision 4d6286a3 (taxeditor): - added reference selection to Sequence DetailsView
Patrick Plitzner
05:38 PM Revision 443093f8 (cdmlib-apps): fix test source
Andreas Müller
05:36 PM Revision 08cc3012 (cdmlib-apps): bugfix for validating synonyms accepted taxa in synonym relations
Andreas Müller
05:35 PM Revision 6460df89 (cdmlib-apps): bugfix for integer facts
Andreas Müller
03:36 PM Revision 4dab7e05 (taxeditor): - added element for Sequence DetailsView
Patrick Plitzner
03:35 PM Revision 8019d634 (cdmlib-apps): minor
Andreas Müller
01:36 PM Revision dd8c8181 (taxeditor): - added support for creating and viewing SingleReads in DerivateView
- added DetailsViews for SingleReads Patrick Plitzner
01:18 PM Revision 08cb3227 (cdmlib-apps): message handling for name relationships
Andreas Müller
01:15 PM Revision eb27ca9d (cdmlib-apps): update salvador source
Andreas Müller
01:01 PM Revision cc9764b1 (cdmlib): added a test for removeTaxonBase in testChangeSynonymToRelatedTaxon()
Katja Luther
10:56 AM Revision 72ee2e9f (taxeditor): merge-update from trunk
Patrick Plitzner
10:50 AM Revision 238441fa (taxeditor): - added Amplification and Sequence to DerivateView
- added context menu entry for the creation of both
- added DetailsViews for both
Patrick Plitzner

12/27/2013

10:59 PM Revision a7c12369 (cdmlib): CdmUpdater H2 compatibel (still needs to be tested)
Andreas Müller
10:57 PM Revision 4926ed32 (cdmlib): CdmUpdater H2 compatibel (still needs to be tested)
Andreas Müller

12/20/2013

04:16 PM Revision 1c83c66d (cdmlib): add TaxonXSourceHandler to atomised the methods ;)
Patricia Kelbert
04:15 PM Revision ecfa9de5 (cdmlib): fight with the reuse of taxon for TaxonX
Patricia Kelbert
01:15 PM Revision 989239ff (taxeditor): Added Problems View to the Show View menu
Ayco Hollemann

12/19/2013

10:29 PM task #3749: Check if all molecular data is shown correctly in data portal [also DISCUSS]
showing consensusSequence and adding TODO comments : r19760
Andreas Kohlbecker
04:28 PM task #3749 (In Progress): Check if all molecular data is shown correctly in data portal [also DISCUSS]
> transient methods like Sequence.getGenBankUri() or #getBoldUri(). Should we move these to the cdmlib-ext module and... Andreas Kohlbecker
10:29 PM Revision 1083804e (cdm-dataportal): showing consensusSequence and adding TODO comments - #3749 (Check if all molecular data is shown correctly in data portal)
Andreas Kohlbecker
01:57 PM Revision 595de9f0 (cdm-dataportal): improvement for #3932 (wrong media urls in html cause multiple page loads)
Andreas Kohlbecker
12:16 PM Revision 5e848c4b (cdm-dataportal): fixing #3438 (on first startup the cichorieae portal takes a very long time to load)
Andreas Kohlbecker
12:03 PM Revision 7a202794 (cdmlib): update javadoc and override
Andreas Müller
12:01 PM Revision 668883c7 (cdmlib): add find(Class, id) to common service
Andreas Müller
11:45 AM Revision 30974e73 (cdmlib): remove test method call
Andreas Müller
11:18 AM Revision b5deb531 (cdm-dataportal): typo
Andreas Kohlbecker
11:12 AM Revision 2dd59bb5 (cdm-dataportal): debug file log can be enabled via settings
Andreas Kohlbecker
11:12 AM Revision 762c1af7 (cdm-dataportal): commenting out debug code line
Andreas Kohlbecker

12/18/2013

06:31 PM Revision f26245c8 (cdm-dataportal): fixing #3932 (wrong media urls in html cause multiple page loads)
Andreas Kohlbecker
04:37 PM Revision d9e60681 (taxeditor): - added Amplifications and Seuqences (consensus) to derivate hierarchy (DerivateView)
Patrick Plitzner
11:43 AM Revision 0f1568df (cdmlib): Bug fix for DnaSample record basis
Andreas Müller
10:05 AM Revision 1ec479b5 (cdm-dataportal): adapting isInViewport calculation to new selenium
Andreas Kohlbecker
09:53 AM Revision 1a3a0842 (taxeditor): - adapted to trunk-merge changes
Patrick Plitzner
09:49 AM Revision 3f4118e6 (taxeditor): merge-update from trunk
Patrick Plitzner
09:44 AM Revision 2ffc9bc7 (taxeditor): adapting to method signature change
Andreas Kohlbecker
08:51 AM Revision ea8f8f37 (taxeditor): - added amplification section to DNA DetailsView
Patrick Plitzner
01:21 AM Revision d1885b7b (cdmlib): minor changes (remove logging of missing classification)
Andreas Müller

12/17/2013

08:12 PM Revision 3d202d57 (cdmlib): implementing third rule for #3904 (EuroMed: Implement filtering rules for Distributions)
Andreas Kohlbecker
06:39 PM Revision da4b3ae6 (cdmlib): fixing lazy init exception
Andreas Kohlbecker
05:24 PM Revision d979714a (cdm-dataportal): bug fix
Andreas Kohlbecker
04:06 PM Revision 86f69343 (taxeditor): - added DetailsView for PreservedSpecimen which directly work with DerivedUnit instead of DerivedUnitFacade (new classes work in parallel to the ones using DerivedUnitFacades and start with "PreservedSpecimen")
Patrick Plitzner
03:52 PM Revision 6dd26925 (utis-core): added license info
Cherian Mathew
03:50 PM Revision 35c07e84 (utis-core): added license, readme file
Cherian Mathew
03:46 PM Revision 80016233 (utis-core): updated tests.
fixed occurrences merge in workflow Cherian Mathew
03:37 PM Revision b64bc205 (utis-core): license for project
Cherian Mathew
03:32 PM Revision bc34ad17 (utis-core): updated tests
Cherian Mathew
03:27 PM Revision de925b88 (utis-core): made buildServiceProviderInfo public.
TaxoRESTClient : added comparator class to sort service provider list. Cherian Mathew
03:25 PM Revision 6b753138 (utis-core): changed provider title and other updates
Cherian Mathew
02:38 PM Revision 09a69162 (cdm-dataportal): selenium-tests: automatically taking screenshots of each page tested and updating to selenium 2.39
Andreas Kohlbecker
11:37 AM Revision 6b58403c (cdm-dataportal): adapting test to changes in r19676 : implementing rule 2 and 3 for #3904 (EuroMed: Implement filtering rules for Distributions) - all existing test running successfully
Andreas Kohlbecker
09:03 AM Revision cd7144f7 (taxeditor): - added specific DetailsViews that are not based on DerivedUnitFacade for DNA and specimens
Patrick Plitzner
09:03 AM Revision 826f20d4 (taxeditor): - added preliminary method for getting specimen by type/record basis (needs enhancement with direct SQL queries)
Patrick Plitzner
 

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