Activity
From 11/20/2013 to 12/19/2013
12/19/2013
- 10:29 PM task #3749: Check if all molecular data is shown correctly in data portal [also DISCUSS]
- showing consensusSequence and adding TODO comments : r19760
- 04:28 PM task #3749 (In Progress): Check if all molecular data is shown correctly in data portal [also DISCUSS]
- > transient methods like Sequence.getGenBankUri() or #getBoldUri(). Should we move these to the cdmlib-ext module and...
- 10:29 PM Revision 1083804e (cdm-dataportal): showing consensusSequence and adding TODO comments - #3749 (Check if all molecular data is shown correctly in data portal)
- 01:57 PM Revision 595de9f0 (cdm-dataportal): improvement for #3932 (wrong media urls in html cause multiple page loads)
- 12:16 PM Revision 5e848c4b (cdm-dataportal): fixing #3438 (on first startup the cichorieae portal takes a very long time to load)
- 12:03 PM Revision 7a202794 (cdmlib): update javadoc and override
- 12:01 PM Revision 668883c7 (cdmlib): add find(Class, id) to common service
- 11:45 AM Revision 30974e73 (cdmlib): remove test method call
- 11:18 AM Revision b5deb531 (cdm-dataportal): typo
- 11:12 AM Revision 2dd59bb5 (cdm-dataportal): debug file log can be enabled via settings
- 11:12 AM Revision 762c1af7 (cdm-dataportal): commenting out debug code line
12/18/2013
- 06:31 PM Revision f26245c8 (cdm-dataportal): fixing #3932 (wrong media urls in html cause multiple page loads)
- 04:37 PM Revision d9e60681 (taxeditor): - added Amplifications and Seuqences (consensus) to derivate hierarchy (DerivateView)
- 11:43 AM Revision 0f1568df (cdmlib): Bug fix for DnaSample record basis
- 10:05 AM Revision 1ec479b5 (cdm-dataportal): adapting isInViewport calculation to new selenium
- 09:53 AM Revision 1a3a0842 (taxeditor): - adapted to trunk-merge changes
- 09:49 AM Revision 3f4118e6 (taxeditor): merge-update from trunk
- 09:44 AM Revision 2ffc9bc7 (taxeditor): adapting to method signature change
- 08:51 AM Revision ea8f8f37 (taxeditor): - added amplification section to DNA DetailsView
- 01:21 AM Revision d1885b7b (cdmlib): minor changes (remove logging of missing classification)
12/17/2013
- 08:12 PM Revision 3d202d57 (cdmlib): implementing third rule for #3904 (EuroMed: Implement filtering rules for Distributions)
- 06:39 PM Revision da4b3ae6 (cdmlib): fixing lazy init exception
- 05:24 PM Revision d979714a (cdm-dataportal): bug fix
- 04:06 PM Revision 86f69343 (taxeditor): - added DetailsView for PreservedSpecimen which directly work with DerivedUnit instead of DerivedUnitFacade (new classes work in parallel to the ones using DerivedUnitFacades and start with "PreservedSpecimen")
- 03:52 PM Revision 6dd26925 (utis-core): added license info
- 03:50 PM Revision 35c07e84 (utis-core): added license, readme file
- 03:46 PM Revision 80016233 (utis-core): updated tests.
- fixed occurrences merge in workflow
- 03:37 PM Revision b64bc205 (utis-core): license for project
- 03:32 PM Revision bc34ad17 (utis-core): updated tests
- 03:27 PM Revision de925b88 (utis-core): made buildServiceProviderInfo public.
- TaxoRESTClient : added comparator class to sort service provider list.
- 03:25 PM Revision 6b753138 (utis-core): changed provider title and other updates
- 02:38 PM Revision 09a69162 (cdm-dataportal): selenium-tests: automatically taking screenshots of each page tested and updating to selenium 2.39
- 11:37 AM Revision 6b58403c (cdm-dataportal): adapting test to changes in r19676 : implementing rule 2 and 3 for #3904 (EuroMed: Implement filtering rules for Distributions) - all existing test running successfully
- 09:03 AM Revision cd7144f7 (taxeditor): - added specific DetailsViews that are not based on DerivedUnitFacade for DNA and specimens
- 09:03 AM Revision 826f20d4 (taxeditor): - added preliminary method for getting specimen by type/record basis (needs enhancement with direct SQL queries)
12/16/2013
- 06:00 PM Revision b3489ca5 (cdmlib): fixing init strategy
- 04:02 PM Revision 589bb770 (cdmlib): removing @Override for compatibility with java 1.6
- 03:23 PM Revision f9fb74e5 (cdmlib): fixing return type of getParentLoger method in CdmDataSourceBase for java 1.7
- 03:17 PM Revision db074558 (cdm-dataportal): removing useless uses block
- 03:17 PM Revision d52784e7 (cdm-dataportal): removing second obsolte uses block in palmweb theme
- 03:07 PM Revision 1e3def3e (taxeditor): - added a flag to force also searching for FieldUnits when searching occurrences
- 03:06 PM Revision 7392b04a (cdmlib): - fixed mvn compile error with using java.util.logging.Logger
- 02:36 PM Revision b96fb29a (cdmlib): add FullCoverageDataGenerator
- 02:35 PM Revision 4ea2a059 (cdmlib): javadoc corrections
- 02:34 PM Revision 719d5bed (cdmlib): change exception handling and add method to be compliant with Java 7.x and JDBC 4.1
- 02:29 PM Revision 35b7a965 (cdmlib): fix unhandled filePath for H2 databases
- 12:36 PM Revision 3352ecd6 (cdmlib): minor
- 10:39 AM Revision c12025c2 (taxeditor): - updated DerivateSearchView and DerivateView icon
- 09:57 AM Revision 1613afaa (taxeditor): - updated DerivateSearchView icon
- 08:54 AM Revision 1de3b0d0 (taxeditor): - added empty DetailViews for all derivate types
- 08:53 AM Revision 39cbdc2e (taxeditor): - added derivate types to DerivateSearchView combo
- 08:52 AM Revision 10761ec9 (taxeditor): - fixed bug when creating another DescriptionElement
12/12/2013
- 06:13 PM Revision 02064790 (cdmlib): Clean Up of prototype and added some documentation...
- 03:45 PM Revision 31048df4 (taxeditor): TaxonEditorInput.java : added entire property paths list to taxon service call
- spring-security-remoting-3.1.3.RELEASE.jar : jar for http invoker remoting
build.properties, .classpath, MANIFEST.MF ... - 03:38 PM Revision 815961de (cdmlib): pom.xml : added spring-security-remoting dependency for httpinvoker
- cdmlib-services/pom.xml : added spring-security-remoting dependency for httpinvoker
remotingApplicationContext.xml : ...
12/11/2013
- 03:38 PM Revision cc536825 (taxeditor): - enhanced DNA icon
- - enhanced context menu for derivate creation
- 11:46 AM Revision a35762a8 (taxeditor): - fixed session problems by using just the UUID of the derivate from the DerivateSearchView, passing it to the DerivateViewEditorInput and start the conversation in the EditorInput. All other objects will then be created in the same conversation/session
- 11:44 AM Revision f6c8f566 (cdmlib): - changed parameter of getFieldUnits to UUID
- 11:41 AM Revision cdc0de6a (taxeditor): - removed incorrect cdmlib dependencies
12/10/2013
- 04:25 PM Revision c2dcd1c5 (cdmlib): enabling xsl for statistics also
- 04:06 PM Revision d00b84de (taxeditor): - added icons for derivate views
- - enhanced DerivateViewEditorInput handling
- 04:03 PM Revision dcaea983 (cdmlib): - added method to OccurrenceService to retrieve all parent FieldUnits from a given DerivedUnit
- 10:04 AM Revision c296e574 (taxeditor): - added "Derivates" perspective
- - enhanced selections and icons for derivate views
12/09/2013
- 03:47 PM Revision 27f95c73 (taxeditor): - added icons
- - added error handling
- 02:26 PM Revision d2e1a7c5 (taxeditor): - fixed derivate icons
- - fixed possible NPE
- 02:02 PM Revision d03bd205 (taxeditor): merge-update from trunk
- 02:02 PM Revision 3c7a8f3a (taxeditor): - added derivate icons
- - adapted transient interface
- 10:36 AM Revision e140c036 (taxeditor): - Changed DerivateViewEditorInput to hold the FieldUnit itself
- - added icons to ImageResources
12/06/2013
- 02:39 PM Revision 0e7c4fd1 (cdmlib): let ICdmDataSource implement javax.sql.DataSource #3910
- 01:55 PM feature request #3904: EuroMed: Implement filtering rules for distributions
- updating first rule after discussion with Andreas Müller
- 12:30 PM feature request #3904 (In Progress): EuroMed: Implement filtering rules for distributions
- implemented rules 2 and 3: r19676
- 12:58 PM Revision 35471d5d (taxeditor): adapting to new method signature of getDistributionServiceRequestParameterString()
- 12:28 PM Revision ccfd526c (cdmlib): implementing rule 2 and 3 for #3904 (EuroMed: Implement filtering rules for Distributions) - all existing test running successfully
- 12:27 PM Revision 733f6a0f (cdmlib): documenting purose of class GenericRemoteTester
12/05/2013
- 03:50 PM Revision 4ad70a02 (cdmlib): handle not existing common names correct in DwcA-in
- 03:03 PM Revision b1615b42 (cdmlib-apps)
- 02:33 PM Revision 835cd8b9 (taxeditor): #3877
- 02:33 PM Revision eebd05ba (cdmlib): #3877
- 02:05 PM Revision 0009b996 (cdmlib-apps): minor
- 02:03 PM Revision 0f94eae5 (cdmlib): minor
- 10:56 AM Revision 496f6b24 (cdmlib): creating new branch from remoting
- 10:55 AM Revision 263410bf (taxeditor): creating new branch for remoting
12/04/2013
- 11:08 PM Revision 971b14a3 (cdm-dataportal): comments to document bug in palmweb theme
- 09:09 PM Revision 5f6dc4f4 (cdmlib): new factory methods
- 08:42 PM feature request #3925 (Closed): Unplaced and excluded to TaxonNode
- Currently unplaced and excluded are attributes of Taxon. However, we may want to move it to TaxonNode as this is not ...
- 07:48 PM Revision 7a914b3c (cdmlib): add putter for locality
- 07:41 PM Revision 9b842959 (cdmlib): add "part" to sequence setter
- 06:33 PM Revision 3a5d0703 (cdm-dataportal): fixing some problems regarding the display of use data and harmonizing with latest updated in REST services
- 06:32 PM Revision 9c8e5b5c (cdmlib): working on multilanguage representations in REST services for DescriptionElements and StateData
- 06:32 PM Revision 8282a51a (cdmlib): adding option to specify port
- 06:21 PM Revision b492381e (cdmlib): remove old TDWGArea class
- 04:12 PM Revision 926bb819 (taxeditor): - added icons to derivates in DerivateView
- 03:44 PM Revision 49c540e7 (taxeditor): - extracted AbstractDescriptionPostOperation to be super class of Create Specimen/Taxon DescriptionOperation
- - adapted CreateDescriptionHandler to changes
- fixed refresh of factual data view after creating specimen description - 03:41 PM Revision 9a80354f (cdmlib): - added removeDescriptions() to IDescribable
- - added @Override
- 09:34 AM Revision 0a534d09 (taxeditor): - adapted sub classes of AbstractPostOperation
12/03/2013
- 06:58 PM Revision efa75301 (cdm-dataportal): fixing bug which was due to drupal upgrade to version 7
- 04:45 PM Revision d52fe39b (cdm-dataportal): fixing palmweb related problems
- 03:44 PM Revision 343457b6 (taxeditor): - extracted super class from AbstractPostOperation (same name)
- - created sub class AbstractPost Taxon/Describable Operation
- 03:11 PM Revision 1e9cbe7a (taxeditor): merge-update from trunk
- 03:04 PM Revision 7a0547ca (taxeditor): - enabled DescriptiveView (Factual Data) to show descriptions of SpecimenOrObservationBase
- 01:49 PM Revision f5c3da68 (cdmlib): add convenients method for multiple elements
- 11:47 AM Revision 05e1b851 (cdm-dataportal): bug fix
- 11:35 AM Revision 3b64c68b (taxeditor): - fix for #3849 (mark view dirty for changes on FieldUnits)
- 11:20 AM Revision d54a831a (taxeditor): merge-update from trunk
- 10:49 AM Revision 1403051c (cdmlib): remove CopyOnWriteArrayList
- 10:16 AM Revision 42b31652 (cdmlib-apps): flat classifications for standard list
- 08:42 AM Revision 5e973b68 (cdmlib): daily merge of svn trunk into branch
- 08:28 AM Revision 51b22fcb (cdmlib): changes on TaxonTable, hooked it up with dto and bean item container
12/02/2013
- 06:01 PM Revision 5b2170ca (cdm-dataportal): adding missing default parameter fo function
- 05:43 PM Revision f3096a03 (cdm-dataportal): fixing problem with taxon uris
- 04:58 PM Revision 576280b4 (cdmlib): move fields up
- 04:56 PM Revision 13db1c84 (cdmlib): add first cascading to AgentBase.contact
- 04:36 PM Revision 508e0188 (cdmlib): javadoc and licence
- 03:48 PM Revision 78ee5473 (cdmlib): add link to ticket #3596
- 03:16 PM Revision ca813b0a (cdmlib): clean up and remove redundant !removed: #3596
- 03:06 PM Revision 56a75172 (cdmlib): remove empty lines
- 01:09 PM Revision 38fbea8e (taxeditor): merge-update from trunk\nadded throws to delete methods of transient services
- 01:00 PM Revision 3d6c9acc (taxeditor): merge-update from trunk
- 12:55 PM Revision c0e5fd02 (taxeditor): delete whole classification with children
- 12:54 PM Revision caa603ee (cdmlib)
- 12:26 PM Revision e562544c (cdmlib-apps)
- 12:10 PM Revision 5b7138f9 (cdmlib-apps): minor
- 11:53 AM Revision a2457359 (cdmlib): Add IDescribable interface #3917
- 11:34 AM Revision af3687ad (cdmlib): updated descriptionInitilizationStrategy and added multiLanguageText, in order to be able to access the textdata element
- 10:36 AM Revision d78f45cf (cdmlib): minor
- 09:59 AM Revision 58a93e25 (cdmlib): launcher added
- 09:49 AM Revision 8546e4cd (cdmlib): updated to trunk
11/29/2013
- 06:08 PM Revision 31c20f2f (cdmlib): some minor changes concerning vaadin
- 06:07 PM Revision 9e50a471 (cdmlib)
- 05:56 PM Revision fa9c707e (cdmlib): removed useless packages which were created automatically by vaadin
- 05:55 PM Revision fb41d5e1 (cdmlib): check in of vaaditor and current bugfixes
11/28/2013
- 06:02 PM Revision eea58e0a (cdmlib): fix for init strategy : inverse relationship
- 05:57 PM Revision 1f11e206 (cdm-dataportal): modularizing source and anotation footnotes of description elements, now showing footnotes for all elements
- 05:57 PM Revision 836b94a5 (cdm-dataportal): fixing bugs in theme_cdm_taxonName()
- 04:44 PM Revision 5b3557f9 (cdm-dataportal): for #3899: AlgaTerra/Corvidae: Enable display of IndividualsAssociation
- 04:37 PM Revision d7860c0f (cdmlib): fixed deproxy problem for NonViralName
- 04:19 PM Revision d289e24e (cdmlib): corrected init strategy for inverse relationships
- 02:35 PM feature request #3904: EuroMed: Implement filtering rules for distributions
## Rules implemented into FillHelsinkiOccurrence
1. collect most significant Distributions
1. walk all distinct...- 02:05 PM Revision 7abe6011 (cdm-dataportal): replacing reprecated php code
- 01:57 PM Revision 6fff95b7 (cdmlib): fixing initstrategy for TaxonInteraction
- 01:54 PM Revision 6f35b3fb (cdmlib-apps): fast repair to fix junkins - to be checked
- 01:17 PM Revision d1079ab4 (cdmlib): Override added
- 12:38 PM Revision 16dad983 (cdmlib): minor
- 12:27 PM feature request #2489 (In Progress): strategy for congruent areas in distribution maps: create merged TDWG layer with all levels
- The best solution would be to combine all tdwg layers into one single layer and to have the following four columns in...
- 12:09 PM Revision 97e10b7c (taxeditor): minor
- 11:33 AM Revision cb03e48f (cdmlib): add try-catch ReferencedObjectUndeletableException to all delete calls
- 11:27 AM Revision aa2d500a (cdmlib): #3596
- 10:38 AM Revision 463affc4 (cdmlib): remove import
11/27/2013
- 10:46 PM Revision 54b39f00 (cdmlib): update schema location
- 10:43 PM Revision ff33651f (cdmlib): update schema location
- 10:41 PM Revision 899bfbdc (cdmlib): update schema location
- 10:17 PM Revision 5b55ff37 (taxeditor): Changed label for Descriptive View and Menus => Factual Data #3863
- 09:47 PM Revision 5331f05a (taxeditor): Changed label for Descriptive View => Factual Data #3863
- 08:20 PM Revision 0fd2319e (taxeditor): update some logging
- 06:26 PM Revision 23d65c7b (cdmlib): jvadoc/override
- 06:19 PM Revision f820056e (cdmlib): javadoc
- 05:54 PM Revision cc325694 (cdmlib): merge mine with trunk, hope nothing serious changed
- 05:36 PM Revision d397d161 (taxeditor): - Fixed the creation of a single FieldUnit via context-menu in the bulk editor which was creating two instead
- - added wizard for FieldUnit creation
- 04:56 PM Revision 1a2294c8 (cdm-dataportal): fixngi some minor problems with polytomous keys
- 04:56 PM Revision d08d960b (cdmlib): avoiding NPE in REST controller
- 04:56 PM Revision ce411dd5 (cdm-dataportal): avoiding php notice
- 04:56 PM Revision fa3c3861 (cdmlib): fixing initstrategy for polytomouskeynodes
- 01:36 PM Revision 80273dd5 (taxeditor): merge-update from trunk
- 01:08 PM Revision f0e3bd82 (taxeditor): - unified DerivateLabelProvider
- 12:44 PM Revision b3297dcf (cdmlib)
- 12:34 PM Revision 32021aea (cdmlib): delete terms
- 11:55 AM Revision a0f27d8b (cdmlib): remote.xml : added simple rdf marshaller (named rdfMarshaller) for the web service rdf responses
- RdfViewTest, OaiPmhViewTest : changed SpringBeanByType annotation to SpringBeanByName since we have now two marshalle...
- 11:42 AM Revision 20dbc8a3 (cdmlib): NameInformationTest : sample test file for name information test in RdfViewTest
- rdf-views.xml: new view configuration for rdf view
NameInformationRdf : new rdf class corresponding to NameInformation - 09:02 AM Revision fb649daa (taxeditor): - added functionality to context menu for derivate creation
- - fixed a bug where two FieldUnits were created instead of only on
- added javadoc
11/26/2013
- 05:12 PM Revision 7e0d1701 (cdmlib): finalizing test - see #3730 (Taxon.removeTaxonRelation() raises error on update)
- 04:50 PM Revision 2ba0f3bd (cdm-dataportal): first naive implementation of displaying IndividualsAssociation for #3899: AlgaTerra/Corvidae: Enable display of IndividualsAssociation
- 04:02 PM Revision c4a24a45 (utis-core): removing newlines in occurrences
- 03:18 PM Revision 0f2bdf2b (cdmlib): implementing option to update the database scheme via cdmlib-remote, but blocked by #3910 (eu.etaxonomy.cdm.database.ICdmDataSource is not compatible to javax.sql.DataSource)
- 03:17 PM Revision 3228eb82 (cdm-server): implementing option to update the database scheme via cdmlib-remote, but blocked by #3910 (eu.etaxonomy.cdm.database.ICdmDataSource is not compatible to javax.sql.DataSource)
- 02:54 PM Revision c8c645a2 (taxeditor): - added "isDirty" functionality to DerivateView to allow saving of edited derivates
- 12:02 PM Revision 1b2a8f93 (taxeditor): - added getter for combo element
- - added setEnable() method for DerivateSearchCompositeController
- 11:53 AM Revision f6b03570 (taxeditor): - fixed selection of DerivateSearch result table
- - double-click now opens DerivateView
- 10:03 AM Revision 63599147 (taxeditor): #3897
- 09:29 AM Revision b2f76600 (taxeditor): - linked DerivateSearch with DerivateView via double-click (selection does not yet work)
- 09:27 AM Revision 91bfe65c (taxeditor): - removed list of DerivedUnits from EditorInput to make it more light-weight
- 08:59 AM Revision 7d0ff89c (taxeditor): merge-update from trunk
11/25/2013
- 05:01 PM feature request #3907 (Closed): EuroMed: implement condensed "status" string of distribution information
- split off from #3712 (display of distributions in Euro+Med portal)
since this is something special to the Euro+M... - 04:32 PM feature request #3904: EuroMed: Implement filtering rules for distributions
- [[Anton|Friday 15:35:21]]
Hallo Andreas,
Ich bin mir nicht sicher, worauf sich das mit den Statusangaben bezieht... - 04:04 PM feature request #3904: EuroMed: Implement filtering rules for distributions
- [[eckhard|Wednesday 15:29:07]]
Das Problem ist, dass unser Datenbestand einfach nicht einheitlich ist und nicht so ... - 04:03 PM feature request #3904: EuroMed: Implement filtering rules for distributions
- [[from|original email]]
Hallo Andreas K.,
... es bei der textuellen Anzeige einiger Verbreitungsangaben noch Pro... - 03:57 PM feature request #3904: EuroMed: Implement filtering rules for distributions
- Rules
- 03:43 PM feature request #3904 (Closed): EuroMed: Implement filtering rules for distributions
- ticket split off from #3712: display of distributions in Euro+Med portal
----------------------
## Generi... - 03:43 PM Revision e9116e90 (taxeditor): - added DerivateSearchView
- 09:06 AM bug #3866: Link Taxon Editor name to the taxon in the taxon navigator
- additional comment on #3895:
What I found out so far is that a taxon node is only expanded for an active editor if... - 08:46 AM Revision c4957163 (taxeditor): - removed usage of compatibility interface IEntitySelectionElement
- 08:44 AM Revision 4b8b76cc (taxeditor): - quick-fix for DerivateView: always create a FieldUnit when creating a DerivedUnitFacade because a FieldUnit is needed as the root of the hierarchy
11/21/2013
- 08:18 PM Revision 81e88589 (cdmlib): TreeNodeBeanProcessor to suppresses the redundant output of distribution.area in distribution trees
- 08:18 PM Revision 7376a447 (cdmlib): TreeNodeBeanProcessor to suppresses the redundant output of distribution.area in distribution trees
- 08:17 PM Revision 2aaa7231 (cdmlib): cleaning up
- 05:29 PM Revision d6a3e8ce (cdmlib): simplifying and refactoring the distribution tree implementation, fixes problems in #3475 #2562 #3893
- 05:29 PM Revision 47dfe484 (cdm-dataportal): adapting test to new situation after adapting portal to refactored distribution tree implementation in cdmlib
- 05:29 PM Revision 85b65ccc (cdm-dataportal): adapting portal to refactored distribution tree implementation in cdmlib, fixes problems in #3475 #2562 #3893
- 05:28 PM Revision 6e5825eb (cdm-dataportal): ignoring file
11/20/2013
- 12:50 PM Revision a302a44d (cdmlib)
- 11:36 AM bug #3872: Title cache is null if the reference is a journal
- this occured during the workshop, either when creating a new reference (nomenclatural reference) or after an import. ...
- 11:00 AM bug #3872: Title cache is null if the reference is a journal
- I cannot reproduce the bug.
Do you have an reproducable steps?
- 10:26 AM bug #3872: Title cache is null if the reference is a journal
- it is a bug
- 09:14 AM bug #3872: Title cache is null if the reference is a journal
- Is this is a wanted behavior or a bug? Should it be null or not? I am confused because the ticket is classified as a ...
- 11:23 AM Revision 599a680e (cdmlib): #3730
- 11:09 AM bug #3866: Link Taxon Editor name to the taxon in the taxon navigator
- Another issue: the state of the "Link with editor"-button is not saved. Initially it is always turned off.
- 10:42 AM Revision 6e73cd53 (taxeditor): add real deletion of polytomouskeynodes
- 10:41 AM Revision d6540dba (cdmlib): add deletion of polytomouskeynodes
- 09:55 AM Revision cbe31975 (utis-core): fixed type mismatch problems
- 09:55 AM Revision 7fa1a64a (utis-core): added port as argument for building URIs
- 09:13 AM Revision 865bf5e0 (taxeditor): - removed "hexagesimal" (fixes #3879)
- 09:13 AM Revision f29baa52 (taxeditor): - derivates now show the correct type (record basis) in the bulk editor
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