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From 09/23/2013 to 10/22/2013

10/22/2013

05:49 PM Revision 2a67e647 (cdmlib): Setting PublisherTest to Ignore as it's breaking build in Jenkins.
Lorna Morris
05:20 PM Revision 1619aefe (cdmlib): reintegrating mediawiki export
Sybille Bürs
04:23 PM Revision a1863334 (cdmlib): commit after merge from trunc
Sybille Bürs
04:02 PM Revision dfc941e3 (cdmlib): Fixed method causing mvn build error.
Lorna Morris
04:00 PM Revision 909641c4 (cdmlib): minor
Andreas Müller
03:50 PM Revision 3db3f92b (cdmlib): added kindOfUnit to derivedUnitFacade
Andreas Müller
03:40 PM Revision 98da5b05 (cdmlib): made some changes/restructuring, to get all parameter options actually working and tested everything and fixed bugs
Sybille Bürs
02:07 PM Revision 4063a942 (taxeditor): - added PrimaryMediaSource as default for media source (fixes #3570)
Patrick Plitzner
01:22 PM feature request #3816 (Closed): Create "Undefined" status and choose it for NULL status
See #3812 for details
Andreas Müller
01:12 PM Revision 64240514 (taxeditor): - fixed saving problem due to cloning of FieldUnit
Patrick Plitzner
01:09 PM Revision 60f1fa2b (taxeditor): - add sources to classpath
Patrick Plitzner
10:17 AM Revision 15eafb13 (cdmlib): fixing class cast problem with hibernate proxy instance
Andreas Kohlbecker
09:17 AM Revision 7f71136d (cdm-dataportal): UI documentation
Andreas Kohlbecker
09:07 AM Revision 7668756c (taxeditor): merge-update from trunk
Patrick Plitzner
09:03 AM Revision 503a90d0 (taxeditor): - removed unused berlin model imports
Patrick Plitzner
08:33 AM Revision b5c51bc0 (taxeditor): merge-update from trunk
Patrick Plitzner
01:00 AM Revision e3026d72 (cdm-dataportal): adding option to define proj4js definitions
Andreas Kohlbecker
01:00 AM Revision 10848a34 (cdm-dataportal): clearly distinguish between layer dataTyp which can be AREA or POINT
Andreas Kohlbecker

10/21/2013

06:50 PM Revision c9431ec7 (taxeditor): fix linebreak problem for imported names #3798
Andreas Müller
04:05 PM Revision f7ad5209 (taxeditor): Remove BerlinModelImport from Editor
Andreas Müller
03:53 PM Revision 4bef194f (cdm-dataportal): fixing problems with plain image map settings
Andreas Kohlbecker
03:12 PM Revision 6b973583 (cdmlib): fix failing test for TaxonNodeService
Andreas Müller
02:56 PM Revision 2ef3cc3a (cdmlib): minor
Andreas Müller
02:46 PM Revision 64377e70 (cdmlib): some changes for sortindex handling
Andreas Müller
02:32 PM Revision d593c50e (cdmlib): minor
Andreas Müller
02:31 PM Revision 1fbbd42b (cdmlib): use Section for part-of-Articles
Andreas Müller
02:29 PM Revision 8e3d9731 (cdmlib-apps): use Section for part-of-Articles
Andreas Müller
02:20 PM Revision 6369baa0 (cdmlib): fixing test
Andreas Kohlbecker
01:41 PM Revision 6306d487 (cdmlib): - commented method body due to null pointer access (see #3811)
Patrick Plitzner
01:39 PM bug #3811 (Closed): Null pointer access in eu.etaxonomy.cdm.remote.service.DataController
at line 83 and 86 the out stream reference is null.
It is recommended to set the **warning** to **error** for th...
Patrick Plitzner
01:38 PM feature request #2854 (Resolved): Implement part of other title for part of articles and part of booksections
this should be fixed now. HOwever, it seems to be unclear if in-in-references are handled correctly see comment in ma... Andreas Müller
01:35 PM Revision 2ba77a83 (cdmlib): fixing tests after removing baselayer & doNotReuseStyles is a workaround for a problem in the EDIT MapService, see https://dev.e-taxonomy.eu/trac/ticket/2707#comment:24
Andreas Kohlbecker
01:33 PM Revision b88fc6c3 (cdmlib): we put in the classification name as parameter
Sybille Bürs
01:30 PM Revision 80e356f6 (taxeditor): merge-update from trunk
Patrick Plitzner
01:24 PM Revision 5a35a97d (taxeditor): - added not covered switch cases in NameDetailElement
- commented null pointer access in UseObjectManager (FIXME 3.3M) Patrick Plitzner
01:19 PM Revision 5dd8e8b0 (cdmlib-apps): move berlin model import+export to app-import
Andreas Müller
01:17 PM Revision 724f959c (cdmlib-apps): move berlinModel to app-import
Andreas Müller
01:09 PM Revision b035c9d6 (cdmlib): move berlin model import and export to pesi
Andreas Müller
01:00 PM Revision a2e7c979 (cdmlib-apps): add berlin model import + export to pesi
Andreas Müller
12:56 PM Revision bf8cf1bf (cdmlib): move berlin model import and export to pesi
Andreas Müller
12:46 PM Revision 71ccd8e6 (cdmlib-apps): add berlin model import + export to pesi
Andreas Müller
11:41 AM Revision 5439355f (cdm-dataportal): ignoring test, according ticket is #3788 (sort order of search results
broken in free-text taxon search) Andreas Kohlbecker
11:08 AM Revision 66dd6ac6 (cdmlib-apps): remove old vol17 form FdG
Andreas Müller
11:02 AM Revision b08a1d4d (cdmlib-apps): update pathes for Flora Malesiana
Andreas Müller
09:16 AM Revision 2ad5ba11 (taxeditor): - set selection as input for DerivateView and not the element itself
- use OccurenceService for saveOrUpdate of FieldUnit Patrick Plitzner

10/18/2013

11:43 PM Revision a8123fef (cdmlib): removing unnesscary default baselayers and forcing layernames to be lowercase
Andreas Kohlbecker
11:05 PM Revision d40565c5 (cdmlib): using idInVocabulary in EditGeoService (see #3805) and implementing mapper tool to read shapefiles and to attach the contained attribute information to NamedAreas
Andreas Kohlbecker
12:42 AM Revision bf33aaae (cdmlib-apps): remove imports
Andreas Müller

10/17/2013

11:43 PM Revision dbe32096 (cdmlib): cleanup CdmIoBase
Andreas Müller
11:37 PM Revision dba682b6 (cdmlib): Ordering for TaxonRelation Import and some Overrides etc.
Andreas Müller
11:36 PM Revision 778eec89 (cdmlib): minor
Andreas Müller
11:34 PM Revision 1f71497f (cdmlib): minor
Andreas Müller
08:47 PM Revision 8a0cc65b (cdmlib)
Sybille Bürs
08:26 PM Revision 48a41d0d (cdmlib): fixed xslt bug with description not appearing in some palmweb pages
Sybille Bürs
06:07 PM Revision 6a1615ef (cdmlib): Output now shows the name under an image if there isn't a description in the feature under multilanguageText_L10n/text
Lorna Morris
05:44 PM feature request #3709 (In Progress): [E+M][Editor] sufficient rights management for E+M workflow
Andreas Kohlbecker
05:06 PM feature request #3709: [E+M][Editor] sufficient rights management for E+M workflow
**[[pasted|from email]]**
Hallo Andreas und alle anderen,

(sorry Cherian for this Email completely in German)
...
Andreas Kohlbecker
05:27 PM Revision 7b823368 (cdmlib): Changed File.separator to literal forward slash as doesn't work to split a url string in windows using File.separator.
Lorna Morris
04:35 PM bug #3804 (Resolved): E+M import Person titles contain Object.toSting() representations
for example the user dr (Dominik Röpert) is now named as `Person#0<2e86dcfe-25fb-417c-ba5d-6b5739b11df5>` in the las... Andreas Kohlbecker
04:31 PM Revision 4f30b4fe (cdmlib): some nicening of logger output
Sybille Bürs
04:14 PM Revision cb12c40d (cdmlib): we had an intense thought where the wikibot should be created: here we are.
Sybille Bürs
03:30 PM Revision 4388cd45 (cdmlib): commit after merging
Sybille Bürs
11:14 AM Revision 1d9dcce6 (cdmlib): fixed problem in testDeleteSynonymrelationship by using loadStrategy=CleanSweepInsertLoadStragtegy
Katja Luther

10/16/2013

11:16 PM Revision ece40067 (cdmlib): fixing #3797 (StaleStateException caused during taxonNodeService.makeTaxonNodeASynonymOfAnotherTaxonNode())
Andreas Kohlbecker
11:16 PM Revision 8fc1e0fd (cdmlib): documentation
Andreas Kohlbecker
11:16 PM Revision fcd1daf6 (cdmlib): avoiding concurrent modification exception
Andreas Kohlbecker
11:16 PM Revision cba8502d (cdmlib): whitespace
Andreas Kohlbecker
11:16 PM Revision 6319b6d4 (cdmlib): speeding up the permission voting by caching CdmAuthorities in a map per authority string
Andreas Kohlbecker
04:42 PM Revision 4cc79481 (cdmlib): fixing #3792 (permission problem when turning a taxon into a synonmy of another taxon)
Andreas Kohlbecker
04:27 PM Revision 88d947de (taxeditor): - store derivate created by context menu
Patrick Plitzner
04:19 PM Revision d064ba22 (cdmlib): minor
Andreas Müller
11:58 AM Revision 099278bf (cdmlib): Uploaded images to Mediawiki.
Lorna Morris
10:27 AM Revision 5966c200 (taxeditor): merge-update from trunk
Patrick Plitzner
10:27 AM Revision 156912da (taxeditor): - added cdmlib source code to classpath
Patrick Plitzner
09:45 AM Revision 84ef9b56 (taxeditor): - adapted interface changes for TaxonService
Patrick Plitzner
09:36 AM Revision a539e187 (taxeditor): merge-update from trunk
Patrick Plitzner
09:35 AM Revision ad685701 (taxeditor): merge-update from trunk
Patrick Plitzner
09:28 AM Revision 956490c2 (taxeditor): - removed source code attachment for personal folder
Patrick Plitzner
09:01 AM Revision f17fef55 (taxeditor): - enabled creation of FieldUnits in BulkEditor
Patrick Plitzner
08:47 AM Revision e44f328b (taxeditor): - implemented context menu functionality (create specimen)
Patrick Plitzner

10/15/2013

04:47 PM Revision 8de18328 (utis-core): new version including PESI for names retrieval, new GBIF API, handling of empty data
Cherian Mathew
04:31 PM Revision 1a41b805 (utis-core): added new gbif api, fixed encoding and empty input problem
Cherian Mathew
04:23 PM Revision d956b529 (cdmlib): DescriptionElementVoter abstains is furtherDecision is un-decidable
Andreas Kohlbecker
04:12 PM Revision 6d460ad2 (taxeditor): - added context menu property testers for "Create new..." command
Patrick Plitzner
02:23 PM Revision a20c9ff0 (cdmlib-apps): merge vol12 and 17 for FdG
Andreas Müller
02:19 PM Revision 2dcd0b6e (cdmlib): Added call to template to select uri for media for the image gallery.
Lorna Morris
01:57 PM Revision 7dd81198 (cdmlib)
Katja Luther
01:34 PM Revision 679d8c93 (cdmlib): fixed problem with deletion of nodes.
Katja Luther
12:53 PM Revision 8f66b30c (cdmlib): Fixed absolute path for downloading images in Windows. File.separator only works in Linux.
Lorna Morris
11:12 AM Revision 2bbf4768 (cdmlib): fixing bug in TaxonNodeVoter
Andreas Kohlbecker
09:02 AM Revision ba34fb74 (taxeditor): - added context menu to DerivateView
Patrick Plitzner

10/14/2013

11:46 PM Revision 018384bc (cdmlib): minor cleanup
Andreas Müller
11:08 PM Revision fa80c43d (cdmlib): fix reference validation for Berlin Model import
Andreas Müller
08:03 PM Revision b8b4a46a (cdmlib): Fixed encoding problem causing SAXException when reading in the CDM XML documents - German umlauts and French accents were causing the problem.
Lorna Morris
06:43 PM Revision bb60e565 (cdmlib): remove imports
Andreas Müller
06:00 PM feature request #2854 (In Progress): Implement part of other title for part of articles and part of booksections
Andreas Müller
05:54 PM Revision e501c870 (cdmlib): implement publish marker for BM import
Andreas Müller
05:50 PM Revision 2ee46746 (cdmlib): Some updates to Berlin MOdel import validation
Andreas Müller
05:04 PM Revision 8a303624 (cdmlib): javadoc for tree index constants
Andreas Müller
04:32 PM Revision aa81b550 (cdmlib): add sortindex again to classification rootnodes which has been accidentely deleted.
Andreas Müller
04:31 PM Revision 5b850621 (taxeditor): supplemental method for testing permissions
Andreas Kohlbecker
03:57 PM Revision 3c939d69 (taxeditor): updating to latest eclipse rcp indigo jars
Andreas Kohlbecker
03:56 PM Revision 6c7a1f64 (taxeditor): implementing #3791 (Implement operation to move a Description to another Taxon) and improving the operation to move elements
Andreas Kohlbecker
03:53 PM Revision 0af06eb2 (taxeditor): updating comment
Andreas Kohlbecker
03:05 PM Revision ee2e0575 (cdmlib): minor
Andreas Müller
02:51 PM Revision 1c63145e (cdmlib): fix problem with duplicates for annotations in Berlin Model import #3195
Andreas Müller
02:15 PM Revision b7a9755d (cdmlib): minor
Andreas Müller
01:21 PM Revision 2e94319e (taxeditor): fixing #3793 (do not allow to turn an accepted taxon into a synonym as long the accepted taxon still has children)
Andreas Kohlbecker
01:18 PM Revision 955f9843 (cdmlib): remove duplicates from TaxonNode children
Andreas Müller
01:17 PM Revision 5229b9ca (cdmlib): minor changes for common names and occurrences in Berlin Model import
Andreas Müller
10:32 AM Revision 324d3d05 (taxeditor): merge-update from trunk
Patrick Plitzner
09:51 AM Revision a022f6f0 (taxeditor): - derivate view shows derivate hierarchy of FieldUnits and DerivedUnits
Patrick Plitzner

10/12/2013

12:26 AM Revision 2b8fa68b (cdmlib): minor
Andreas Müller

10/11/2013

04:22 PM feature request #3472: Update name in source data when changing an accepted taxon into a synonym
adding a snipped from my notes just for not to lose it:
"this behaviour whether name in source is automatically fi...
Andreas Kohlbecker
03:34 PM bug #3790 (Worksforme): After swapping accepted <> synonym the TaxonNavigator should be refreshed
related to #4004
Overview ticket: #4135
Andreas Kohlbecker
03:24 PM Revision 56fd2263 (cdmlib-apps): minor
Andreas Müller
03:23 PM Revision d225b0a1 (cdmlib): use euroMed areas and some minor clean up; enable authentication for user import
Andreas Müller
03:23 PM Revision 3a63a7de (cdmlib-apps): use euroMed areas and some minor clean up; enable authentication for user import
Andreas Müller
03:20 PM Revision ae7d26e8 (cdmlib-apps): update FdG Activator and FdG test source
Andreas Müller
03:18 PM bug #3788 (New): sort order of search results broken in free-text taxon search
ignoring test eu.etaxonomy.dataportal.selenium.tests.flMalesiana.FloraMalesiana_OriginalSourceTest.Illicium() tempora... Andreas Kohlbecker
03:02 PM Revision 5df8bc08 (cdmlib): updating doumentation on CdmAuthority syntax - adding brackets []
Andreas Kohlbecker
03:02 PM Revision 2c45980f (cdmlib): fixing #3786 (Taxon editor view is not enabled even if a user has sufficient permissions)
Andreas Kohlbecker
01:28 PM Revision ce12a781 (cdmlib): minor
Andreas Müller
11:27 AM Revision a84a1660 (taxeditor): closing all editors when switching to new user
Andreas Kohlbecker
11:24 AM Revision 6feca103 (cdmlib): making sure users to be authenticated are alays up to date
Andreas Kohlbecker
11:24 AM Revision f29a70e0 (cdmlib): updating documentation
Andreas Kohlbecker
10:30 AM Revision 2f1028ca (taxeditor): adding note on using the localrepository profile
Andreas Kohlbecker
10:19 AM Revision c34323ed (taxeditor): adding note on using the localrepository profile
Andreas Kohlbecker
12:34 AM Revision 70ff689f (cdmlib): adapt BerlinModel import to new abbrev reference title, all done except for authorString deduplication
Andreas Müller
12:34 AM Revision b39f1517 (cdmlib-apps): adapt BerlinModel import to new abbrev reference title, all done except for authorString deduplication
Andreas Müller

10/10/2013

07:46 PM Revision 6e314f4f (cdmlib): Added method to get image gallery from CDM into XML export, and started method to export images to Mediawiki.
Lorna Morris
04:05 PM Revision 32ad8ac4 (cdmlib): Add Application Controller example
Andreas Müller
04:00 PM Revision e3893593 (cdmlib): Add Application Controller example
Andreas Müller
09:43 AM Revision a30247b2 (taxeditor): fix the error caused by the delete functionality in the service layer
Katja Luther

10/09/2013

08:59 PM Revision 01e7da3c (cdmlib): removed main in Cdm2MediawikiExporter and did some code nicing, and logger output
Sybille Bürs
08:07 PM Revision 664eeec6 (cdmlib): created testclass to replace main in Cdm2MediawikiExporter
Sybille Bürs
07:26 PM Revision 25caa97d (cdmlib): started on downloading the images
Sybille Bürs
06:45 PM Revision c07103df (cdmlib): handle infinite recursion in markup keys
Andreas Müller
06:39 PM Revision 47fd16fb (cdmlib): handle no parent last nodes
Andreas Müller
06:38 PM Revision 6405c503 (cdmlib): handle mods:partName
Andreas Müller
06:37 PM Revision 20ba7fe2 (cdmlib): handle long common names
Andreas Müller
06:33 PM Revision a85454d0 (cdmlib): handle infinite recursion for node numbering
Andreas Müller
05:46 PM Revision dc7953a1 (cdmlib): some changes
Sybille Bürs
05:28 PM Revision 7d2201c9 (cdmlib): Added childNodes to url for featureNode/uuid to ensure childNodes appear in the result.
Lorna Morris
04:40 PM Revision f1fa3335 (cdmlib): new factory method for TextData
Andreas Müller
03:33 PM Revision 85338079 (cdmlib): merging delete functionality into trunk
Katja Luther
03:15 PM Revision 4a255df7 (cdmlib): some changes
Sybille Bürs
03:13 PM Revision d651df94 (cdmlib): Added prompt for user password
Lorna Morris
02:31 PM Revision b304740f (cdmlib): fixing initialization strategy for description elements
Andreas Kohlbecker
02:13 PM Revision a0033113 (cdm-dataportal): fixing tests for nameUsedInSource implemented
Andreas Kohlbecker
02:07 PM Revision c6bf9ba7 (cdm-dataportal): minor bug
Andreas Kohlbecker
02:05 PM Revision cd64df61 (cdm-dataportal): using CDM_WS_PORTAL_TAXON_SEARCH for all searches
Andreas Kohlbecker
02:05 PM Revision 5575f636 (cdm-dataportal): turning back test mode to normal mode
Andreas Kohlbecker
01:24 PM Revision 8f6040e7 (taxeditor): merge-update from trunk
Patrick Plitzner
01:24 PM Revision 101bf277 (taxeditor): updated the manual
Patrick Plitzner
11:07 AM Revision 27d05e96 (taxeditor): merge-update from trunk
Patrick Plitzner
11:06 AM Revision e5d541d1 (taxeditor): updated the manual
Patrick Plitzner
10:41 AM Revision 2d638231 (cdm-dataportal): fixing tests for nameUsedInSource implemented, this leads to semi-duplication of footnotes since some are without name in source data while other are without
Andreas Kohlbecker
10:41 AM Revision a78b2fc8 (cdm-dataportal): completely disabling CDM_WS_PORTAL_TAXON_FIND for testing
Andreas Kohlbecker
10:06 AM Revision d803442e (taxeditor): merged the trunk into the branch
Patrick Plitzner
09:59 AM Revision bd176faf (taxeditor): merge-update from trunk
Patrick Plitzner
09:47 AM Revision f0a072ff (taxeditor): - aligned linkt text for creation of new elements via pop-up dialog
Patrick Plitzner
08:26 AM Revision 016760da (taxeditor): merge-update from trunk
Patrick Plitzner
08:21 AM Revision 377e5fa5 (taxeditor): - added missing dependencies in feature initial workspace set up
Patrick Plitzner

10/08/2013

08:25 PM Revision 08649e6e (cdmlib): Removed hard-coded uuids and added methods to get the Taxon rootNode (for the taxon tree we want to publish) from the Taxon name and a method to get the default feature tree.
Lorna Morris
04:48 PM Revision ce620548 (cdmlib-apps): add Fdg 12-20
Andreas Müller
04:26 PM Revision 7ba126f0 (cdmlib): handle pages in FlorML
Andreas Müller
03:59 PM Revision 1c3b2bde (taxeditor): merge-update from trunk
Patrick Plitzner
03:59 PM Revision 55790ccd (taxeditor): updated getting started section on taxeditor site
Patrick Plitzner
02:49 PM Revision 8c8a087d (cdmlib): created a method in CdmUtils for creating a directory in ~/.cdmLibrary
Sybille Bürs
02:47 PM Revision efa2708e (cdmlib): changed outputfile location
Sybille Bürs
02:45 PM Revision 370821f1 (taxeditor): - added missing interface method
Patrick Plitzner
02:41 PM Revision 4aebadc9 (taxeditor): merge-update from trunk
Patrick Plitzner
02:29 PM Revision 91087794 (taxeditor): - fixed org.hamcrest dependency error which occurs when doing a fresh set up of the editor workspace
Patrick Plitzner
01:39 PM Revision bec9df5a (taxeditor): merge-update from trunk
Patrick Plitzner
01:23 PM Revision 4bb0a32b (taxeditor): - fixed org.hamcrest dependency error which occurs when doing a fresh set up of the editor workspace
Patrick Plitzner
12:55 PM Revision b934e25a (taxeditor): HACK attempt so solve myqsl type mapping problem: bit <> boolean
Andreas Kohlbecker
11:52 AM Revision 8c22460a (cdmlib): changed some output files save/delete flag stuff
Sybille Bürs
11:30 AM Revision 046b235b (cdm-dataportal): fixing #3704 (show name in source for Distributions)
Andreas Kohlbecker
11:30 AM Revision 847bb49e (cdm-dataportal): bugfix
Andreas Kohlbecker
08:40 AM Revision 5a4afedd (taxeditor): - added DerivateView to workbench
- implemented dummy content
- fixed warnings
Patrick Plitzner

10/07/2013

04:44 PM Revision 43d39485 (taxeditor): enabling taxeditor for inifinspan
Andreas Kohlbecker
04:17 PM Revision 15fc5483 (cdm-dataportal): #2432 [E+M][Portal] Implement search for multiple areas implemented
Andreas Kohlbecker
04:16 PM Revision 393b9cfc (cdmlib): including all sub areas
Andreas Kohlbecker
04:16 PM Revision 1bdb2791 (cdmlib): removing debug code line
Andreas Kohlbecker
04:16 PM Revision 4f560024 (cdmlib): modified area parameter binding for taxon/search REST services
Andreas Kohlbecker
04:16 PM Revision faef9879 (cdmlib): REST end point to page all NamedAreas in use
Andreas Kohlbecker
04:16 PM Revision 8c8b8af5 (cdmlib): methods to list and page all NamedAreas in use
Andreas Kohlbecker
04:16 PM Revision d52434e0 (cdmlib): removing dead method
Andreas Kohlbecker
04:16 PM Revision be924159 (cdmlib): renaming web application
Andreas Kohlbecker
04:16 PM Revision e6ed43d5 (cdmlib): typo
Andreas Kohlbecker
04:16 PM Revision f3eec1bd (cdmlib): TODO comment
Andreas Kohlbecker
03:55 PM Revision c6e379b7 (cdmlib): new branch for validation framework
Andreas Kohlbecker
03:54 PM Revision c8328661 (taxeditor): new branch for validation framework
Andreas Kohlbecker
03:12 PM Revision 01f54379 (taxeditor): - fixed imports
Patrick Plitzner
01:13 PM Revision c01155f7 (taxeditor): - added still non-functional classes for derivate tree view
Patrick Plitzner
12:13 PM Revision 79ca3e43 (cdmlib): fix titleCache truncation size issue (e.g. #3774)
Andreas Müller

10/02/2013

09:07 AM Revision a91f6dea (taxeditor): merge-update from trunk
Patrick Plitzner
08:59 AM Revision 73e1bdac (cdmlib): cleanup cdmlibio
Patricia Kelbert
08:33 AM Revision 2c1d082f (cdmlib): merge cdmlibio trunk into branch
Patricia Kelbert
08:32 AM Revision 58ce0321 (cdmlib): merge appimport trunk into branch
Patricia Kelbert
08:18 AM Revision 2272f4da (cdmlib): update branch appimport
Patricia Kelbert
08:18 AM Revision 75911411 (cdmlib): update branch taxonx
Patricia Kelbert

10/01/2013

10:43 PM Revision 52b97975 (taxeditor): local eclipse version specific dependecy changes
Andreas Kohlbecker
10:38 PM Revision a5525b10 (taxeditor): branch for infinispan - clustered lucene index
Andreas Kohlbecker
10:37 PM Revision 9d9682a7 (taxeditor): undoing last commit
Andreas Kohlbecker
10:24 PM Revision 8c19f965 (taxeditor): local eclipse version specific dependecy changes
Andreas Kohlbecker
03:12 PM Revision 89fdf8a2 (taxeditor): - organized plugin.xml extensions
- check if data source is connected when starting BioCaseQuery
- converted combo selections to text fields for speci...
Patrick Plitzner
11:57 AM Revision 0f595da2 (taxeditor): - added missing enum switches with logger warnings
Patrick Plitzner

09/30/2013

05:13 PM Revision c75bc08f (cdmlib): - some refactoring
Patrick Plitzner
04:38 PM Revision c59fde9f (cdmlib): - added ABCD paths for missing query params
Patrick Plitzner
09:49 AM Revision ac681fe1 (cdmlib): - fixed NPE in BioCaseQueryGenerator
Patrick Plitzner
09:29 AM Revision c55c6773 (taxeditor): - added javadoc
Patrick Plitzner
09:29 AM Revision 0cb402a7 (cdmlib): - added javadoc
Patrick Plitzner

09/28/2013

03:05 AM Revision 84635420 (cdmlib): add FeatureNodeService test #3757
Andreas Müller
03:04 AM Revision 4b856c86 (cdmlib): handle missing featureTree for treeNode #3757
Andreas Müller
01:31 AM Revision cd7ef734 (cdmlib): added TaxonNode order to preferences #3773
Andreas Müller
01:26 AM Revision f2231418 (cdmlib): Clean up DescriptionBase (minor)
Andreas Müller
12:44 AM feature request #3702 (Closed): WaterbodyOrCountry ISO 3166 alpha-3 code should be available as attribute
Andreas Müller
12:37 AM Revision 2881a717 (cdmlib): correct handling of null abbrev label in SingleTermUpdater
Andreas Müller

09/27/2013

10:44 PM feature request #3764 (Resolved): Improve formatting for reference type Section
see #2853, see also #2862
Open issues:
* Separator between author (incl. year) and article/booksection if secti...
Andreas Müller
07:48 PM Revision a90bc33f (cdmlib): some bugfixes for the update script (merge r19034 into trunk)
Andreas Müller
07:39 PM Revision 560df098 (cdmlib): reordering and changing tests for OriginalSOurceType and make second non capital in MeasurementUnit.csv
Andreas Müller
07:38 PM Revision ebd0744c (cdmlib): minor
Andreas Müller
07:23 PM Revision 45287ef7 (cdmlib): Fix non capital meter #3760
Andreas Müller
07:10 PM Revision 7109757a (cdmlib): some bugfixes for the update script
Andreas Müller
06:05 PM feature request #3756 (New): Missing data and layout improvements for MediaSpecimen in data portal
There is a Media attribute in MediaSpecimen which needs to be shown.
#3614, #3597, #3751
====
For the /o...
Andreas Müller
04:19 PM task #3749 (In Progress): Check if all molecular data is shown correctly in data portal [also DISCUSS]
data available only for Alga Terra (needs new import) and maybe for campanula.
We may also want to use transient...
Andreas Müller
04:17 PM Revision dc435632 (cdm-dataportal): switching simple search back to old search and using new luncene bases search only for advances search
Andreas Kohlbecker
04:07 PM feature request #3312 (Closed): Add time period scope to DescriptionElementBase
Andreas Müller
04:07 PM feature request #3747 (Closed): Check if time period is handled correctly for description elements in data portals
~~also modifiers and modifyingText are not yet checked as not yet editable via TaxEditor~~ -->>> #8144
see #3312...
Andreas Müller
04:05 PM feature request #3746 (Closed): Implement time period scope for description elements in TaxEditor
~~also modifiers and modifyingText is still missing there. The later should be available only for NON-TextData.~~ =>... Andreas Müller
04:01 PM Revision ff20b28f (cdm-dataportal): #3744: Remove all usage of ICBN, replace by ICNAFP
Andreas Kohlbecker
03:34 PM feature request #3742 (Closed): Display altitude, distance to Ground and watersurface correctly in dataportal
see #2663, #3741, #3072, #3074,
Andreas Müller
03:34 PM Revision 7f6dcdcf (cdmlib): restoring old findTaxaAndNames controller methods
Andreas Kohlbecker
03:01 PM Revision fae36a2a (cdm-dataportal): renaming FeatureNode->children to childNodes [CDM 3.3]
Andreas Kohlbecker
02:45 PM Revision d1481c18 (taxeditor): - query parameters are read from wizard page
- enhanced query's toString() method Patrick Plitzner
02:45 PM Revision 6f8d5f80 (cdmlib): - query parameters are read from wizard page
- enhanced query's toString() method Patrick Plitzner
02:31 PM feature request #3740 (Closed): Allow recursively setting the publish bit for TaxonBase
implemented into ITaxonService (source:trunk/cdmlib/cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/ITaxon... Andreas Müller
12:42 PM bug #3737 (Closed): Protected caches for taxa and names behave inconsistent
Some name protected caches do not really work as expected here. We need to test the protected cache behaviour by hand... Andreas Müller
11:56 AM Revision a14ee477 (taxeditor): - implementing transient service layer to use wit ABCD import to not save the data
Patrick Plitzner
11:26 AM Revision 11aff7aa (cdmlib): adding POST capabilities to rest service endpoint
Andreas Kohlbecker
11:26 AM Revision c7533f2e (cdmlib): furher improvement to the TitleAndNameCacheAutoInitializer
Andreas Kohlbecker
11:10 AM Revision c9a0cc81 (cdmlib): fix missing taxon.titleCache length ->800 in update script
Andreas Müller
12:24 AM Revision 4138a41e (cdmlib): there is a class now, to do mediawiki export.method exportFromFile does not work proper. images have to be imported
Sybille Bürs
12:20 AM Revision b9a19ae2 (cdmlib): there is a class now, to do mediawiki export.method exportFromFile does not work proper. images have to be imported
Sybille Bürs

09/26/2013

06:58 PM bug #3658: Update Nomenclatural code for datasources
preliminary bugfix in CdmPersistentDataSource: r19021
Andreas Müller
06:38 PM Revision 7abcdc53 (cdmlib): minor updates to updater
Andreas Müller
06:37 PM Revision 1ad5532c (cdmlib): preliminary fix for ICBN bug #3658
Andreas Müller
06:24 PM Revision 7cf7cd5f (cdmlib): some bugfixes for update script
Andreas Müller
05:45 PM Revision 6c2ad6ce (cdmlib): improving the TitleCacheAutoInitializer and turning it into a TitleAndNameCacheAutoInitializer
Andreas Kohlbecker
05:45 PM Revision b9cbcc7c (cdmlib): moving all beaninitializer classes to new package 'eu.etaxonomy.cdm.persistence.dao.initializer'
Andreas Kohlbecker
03:55 PM Revision 544878ef (taxeditor): - DataImportSpecimenEditorInput now call cdmlib-ext to query BioCASE provider and calls cmlib-io to use ABCD-import for converting ABCD into SpecimenOrObservationBase objects
- implemented TransientCdmRepository an TransientOccurenceService for that Patrick Plitzner
03:00 PM Revision 59d9c17d (cdm-server): switching project version to 3.3.0-SNAPSHOT
Andreas Kohlbecker
02:50 PM Revision 7d436597 (cdmlib): refactoring MatchMode class
Andreas Kohlbecker
02:50 PM Revision 4881279a (cdmlib): todo comment regarding #2432 ([E+M][Portal] Implement search for multiple areas)
Andreas Kohlbecker
02:50 PM Revision 2a76bd4e (cdmlib): using the recomendet requestPathAndQuery() for logging HTTP requests in controllers
Andreas Kohlbecker
02:50 PM Revision b6ace648 (cdmlib): using the new search method in the controlers and fixing a bug with missing grouping_by field
Andreas Kohlbecker
02:02 PM Revision 6280e639 (cdm-dataportal): using new freetext taxon search in portal + fixing problem in settings
Andreas Kohlbecker
02:02 PM Revision 8faca2e1 (cdm-dataportal): comment to maps
Andreas Kohlbecker
01:22 PM Revision 2c5f5b34 (cdmlib): changes on Widgetset
Alexander Oppermann
01:18 PM Revision 2bad9416 (cdmlib): changes on Widgetset
Alexander Oppermann
10:03 AM feature request #3734 (Closed): Stop separating term and schema update
This creates problems if you go for more then 1 update. Terms may not work with the latest version of the schema. Che... Andreas Müller
09:08 AM Revision 3c462983 (cdmlib): - fixed BioCASE query XML
Patrick Plitzner

09/25/2013

05:23 PM Revision d748f4f4 (taxeditor): merge-update from trunk
Patrick Plitzner
04:56 PM Revision 423c7510 (taxeditor): - added more information to results
Patrick Plitzner
04:51 PM Revision 85e782b2 (taxeditor): merged latest model changes from trunk
Cherian Mathew
04:43 PM Revision 27f5197f (taxeditor): adapting to latest model changes for change of package
Cherian Mathew
04:23 PM Revision 2fe1fe8f (taxeditor): Snapshot branch for version 3.3.0-SNAPSHOT
Cherian Mathew
04:23 PM Revision 6fb3c431 (taxeditor): Updated version in config files to 3.3.0-SNAPSHOT
Cherian Mathew
04:07 PM Revision 46c12f49 (taxeditor): reintegrated model changes from branch 3.3-MC-SNAPSHOT
Cherian Mathew
03:54 PM Revision bb38665e (cdmlib-apps): reintegrate cdmlib-app-3.3 branch into trunk
Andreas Müller
03:21 PM Revision 752d2335 (cdmlib): reintegrate cdm-3.3 branch into trunk
Andreas Müller
03:14 PM Revision 85b82fb6 (cdmlib): minor
Andreas Müller
03:13 PM Revision 7eb1f517 (cdmlib): change version of parent pom -> 3.3.0
Andreas Müller
03:12 PM Revision cfcdda3c (cdmlib): change version ->3.3.0, move CdmMetaData, change schema version -> 20130924, fix TaxonServiceSearch test, update update-script
Andreas Müller
01:39 PM Revision 3ee20195 (taxeditor): - moved actual query execution from the wizard to the editor
Patrick Plitzner
01:38 PM Revision 854a914f (cdmlib): - added hashCode(), equals(), and toString() method to BioCaseQuery
Patrick Plitzner
01:37 PM Revision a434540d (cdmlib): merge trunk into cdmlib v3.3 branch
Andreas Müller
01:34 PM Revision ccd68eb8 (cdmlib): remove old TermsDataSet
Andreas Müller
01:28 PM Revision d716c44b (cdmlib): merge trunk into cdmlib v3.3 branch
Andreas Müller
01:15 PM Revision e63753b4 (cdmlib): cleaning up
Andreas Kohlbecker
01:14 PM Revision 173f67a2 (cdmlib): adding missing type restriction for common names
Andreas Kohlbecker
12:44 PM Revision 0ce81abb (cdmlib): comment automated writing of test dataset
Andreas Müller
12:43 PM Revision 6a9ce9d3 (taxeditor): - commented compile errors due to model changes (Ticket #3732)
Patrick Plitzner
12:42 PM Revision e7cf324d (cdmlib): minor
Andreas Müller
12:05 PM Revision 6ac58758 (taxeditor): - commented compile errors due to model changes (Ticket #3732)
Patrick Plitzner
12:00 PM bug #3732 (New): adapt DerivedUnitBaseDetailElement and PreservationMethodMenuPreferences to cdm model changes
PreservationMethod has become a subclass of MaterialOrMethodEvent with a DefinedTerm containing the information of th... Patrick Plitzner
11:38 AM Revision 43dcd8e2 (cdmlib): fixing invalid test data
Andreas Kohlbecker
11:11 AM Revision b623f722 (taxeditor): merged trunk into branch
Patrick Plitzner
11:07 AM Revision 5552e3cf (cdmlib): commenting potential bug, see #3728 (DescriptionListPortalController.getDescriptionElementsForTaxon() seems to be using inapproptiate init strategy)
Andreas Kohlbecker
11:07 AM Revision 6788c990 (cdmlib): documentation
Andreas Kohlbecker
11:07 AM Revision 8657812d (cdmlib): commenting out non working part of test, see #3730 (Taxon.removeTaxonRelation() raises error on update)
Andreas Kohlbecker
11:07 AM Revision b75051b1 (cdmlib): all search tests running successful
Andreas Kohlbecker
11:07 AM Revision 63c4d12f (cdmlib): implemnting TaxonRelationshipClassBridge to also allow filtering misapplications by distribution, but run into a potential java bug which is really weired the solution i found to circumvent it is documented in TaxonServiceImpl.java
Andreas Kohlbecker
11:07 AM Revision e85caaae (cdmlib): TODO comment to the ClassInfoBridge
Andreas Kohlbecker
11:07 AM Revision e18a1639 (cdmlib): another TODO comments regarding the AcceptedTaxonBridge
Andreas Kohlbecker
11:07 AM Revision 4636717c (cdmlib): another TODO comments regarding the AcceptedTaxonBridge
Andreas Kohlbecker
11:07 AM Revision 41bb4c3b (cdmlib): search by synonym also working with distrubution filter. TODO comments to the AcceptedTaxonBridge
Andreas Kohlbecker
11:07 AM Revision da9fe05a (cdmlib): adding missing @Override
Andreas Kohlbecker
11:07 AM Revision 73785906 (cdmlib): changing test data a little bit
Andreas Kohlbecker
11:07 AM Revision 2481bd0b (cdmlib): distribution filter now working for taxon search by common names. commit includes results from research on best way to imnplement this
Andreas Kohlbecker
11:06 AM Revision f1fd0785 (cdmlib): refactoring for a lucene cross index search
Andreas Kohlbecker
11:06 AM Revision 1b4a1874 (cdmlib): further tests show that cross index search is not working, commenting out these tests for refactoring
Andreas Kohlbecker
11:06 AM Revision b2ccab05 (cdmlib): turning off spell check index purging
Andreas Kohlbecker
11:06 AM Revision 652fe14a (cdmlib): filtering of lucene searches by distributions basically implemented, needs to be improved though
Andreas Kohlbecker
11:04 AM Revision 5c3e7cc7 (taxeditor): reintegrated 3.2.4 SNAPSHOT
Patrick Plitzner
11:00 AM Revision f6a8dc56 (taxeditor): merged model adaptions to cdmlib 3.2.4 from campanula branch
Patrick Plitzner

09/24/2013

11:24 AM Revision 52198e03 (taxeditor): merge-update from trunk
Patrick Plitzner

09/23/2013

05:54 PM Revision 9b2cbc32 (taxeditor): - adapted AbcdImportWizard to model (using input stream as input)
- added exception logging Patrick Plitzner
05:48 PM Revision 5f7fd72e (taxeditor): - added new DataImportEditor for displaying/editing results of specimen search wizard
- disabled PreservationMethod related widget as they have not been adapted to the model changes yet Patrick Plitzner
01:52 PM Revision 6ea38932 (cdmlib): *bug fix for taxonNode which have no classification
Alexander Oppermann
01:11 PM Revision 9e59c2ac (taxeditor): - @Override annotation
- fixed some more warnings Patrick Plitzner
11:59 AM Revision 81b909ab (cdmlib): \
Alexander Oppermann
11:57 AM Revision 656c531d (cdmlib): added a simple wizard
Alexander Oppermann
 

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