Activity
From 09/09/2013 to 10/08/2013
10/08/2013
- 08:25 PM Revision 08649e6e (cdmlib): Removed hard-coded uuids and added methods to get the Taxon rootNode (for the taxon tree we want to publish) from the Taxon name and a method to get the default feature tree.
- 04:48 PM Revision ce620548 (cdmlib-apps): add Fdg 12-20
- 04:26 PM Revision 7ba126f0 (cdmlib): handle pages in FlorML
- 03:59 PM Revision 1c3b2bde (taxeditor): merge-update from trunk
- 03:59 PM Revision 55790ccd (taxeditor): updated getting started section on taxeditor site
- 02:49 PM Revision 8c8a087d (cdmlib): created a method in CdmUtils for creating a directory in ~/.cdmLibrary
- 02:47 PM Revision efa2708e (cdmlib): changed outputfile location
- 02:45 PM Revision 370821f1 (taxeditor): - added missing interface method
- 02:41 PM Revision 4aebadc9 (taxeditor): merge-update from trunk
- 02:29 PM Revision 91087794 (taxeditor): - fixed org.hamcrest dependency error which occurs when doing a fresh set up of the editor workspace
- 01:39 PM Revision bec9df5a (taxeditor): merge-update from trunk
- 01:23 PM Revision 4bb0a32b (taxeditor): - fixed org.hamcrest dependency error which occurs when doing a fresh set up of the editor workspace
- 12:55 PM Revision b934e25a (taxeditor): HACK attempt so solve myqsl type mapping problem: bit <> boolean
- 11:52 AM Revision 8c22460a (cdmlib): changed some output files save/delete flag stuff
- 11:30 AM Revision 046b235b (cdm-dataportal): fixing #3704 (show name in source for Distributions)
- 11:30 AM Revision 847bb49e (cdm-dataportal): bugfix
- 08:40 AM Revision 5a4afedd (taxeditor): - added DerivateView to workbench
- - implemented dummy content
- fixed warnings
10/07/2013
- 04:44 PM Revision 43d39485 (taxeditor): enabling taxeditor for inifinspan
- 04:17 PM Revision 15fc5483 (cdm-dataportal): #2432 [E+M][Portal] Implement search for multiple areas implemented
- 04:16 PM Revision 393b9cfc (cdmlib): including all sub areas
- 04:16 PM Revision 1bdb2791 (cdmlib): removing debug code line
- 04:16 PM Revision 4f560024 (cdmlib): modified area parameter binding for taxon/search REST services
- 04:16 PM Revision faef9879 (cdmlib): REST end point to page all NamedAreas in use
- 04:16 PM Revision 8c8b8af5 (cdmlib): methods to list and page all NamedAreas in use
- 04:16 PM Revision d52434e0 (cdmlib): removing dead method
- 04:16 PM Revision be924159 (cdmlib): renaming web application
- 04:16 PM Revision e6ed43d5 (cdmlib): typo
- 04:16 PM Revision f3eec1bd (cdmlib): TODO comment
- 03:55 PM Revision c6e379b7 (cdmlib): new branch for validation framework
- 03:54 PM Revision c8328661 (taxeditor): new branch for validation framework
- 03:12 PM Revision 01f54379 (taxeditor): - fixed imports
- 01:13 PM Revision c01155f7 (taxeditor): - added still non-functional classes for derivate tree view
- 12:13 PM Revision 79ca3e43 (cdmlib): fix titleCache truncation size issue (e.g. #3774)
10/02/2013
- 09:07 AM Revision a91f6dea (taxeditor): merge-update from trunk
- 08:59 AM Revision 73e1bdac (cdmlib): cleanup cdmlibio
- 08:33 AM Revision 2c1d082f (cdmlib): merge cdmlibio trunk into branch
- 08:32 AM Revision 58ce0321 (cdmlib): merge appimport trunk into branch
- 08:18 AM Revision 2272f4da (cdmlib): update branch appimport
- 08:18 AM Revision 75911411 (cdmlib): update branch taxonx
10/01/2013
- 10:43 PM Revision 52b97975 (taxeditor): local eclipse version specific dependecy changes
- 10:38 PM Revision a5525b10 (taxeditor): branch for infinispan - clustered lucene index
- 10:37 PM Revision 9d9682a7 (taxeditor): undoing last commit
- 10:24 PM Revision 8c19f965 (taxeditor): local eclipse version specific dependecy changes
- 03:12 PM Revision 89fdf8a2 (taxeditor): - organized plugin.xml extensions
- - check if data source is connected when starting BioCaseQuery
- converted combo selections to text fields for speci... - 11:57 AM Revision 0f595da2 (taxeditor): - added missing enum switches with logger warnings
09/30/2013
- 05:13 PM Revision c75bc08f (cdmlib): - some refactoring
- 04:38 PM Revision c59fde9f (cdmlib): - added ABCD paths for missing query params
- 09:49 AM Revision ac681fe1 (cdmlib): - fixed NPE in BioCaseQueryGenerator
- 09:29 AM Revision c55c6773 (taxeditor): - added javadoc
- 09:29 AM Revision 0cb402a7 (cdmlib): - added javadoc
09/28/2013
- 03:05 AM Revision 84635420 (cdmlib): add FeatureNodeService test #3757
- 03:04 AM Revision 4b856c86 (cdmlib): handle missing featureTree for treeNode #3757
- 01:31 AM Revision cd7ef734 (cdmlib): added TaxonNode order to preferences #3773
- 01:26 AM Revision f2231418 (cdmlib): Clean up DescriptionBase (minor)
- 12:37 AM Revision 2881a717 (cdmlib): correct handling of null abbrev label in SingleTermUpdater
09/27/2013
- 07:48 PM Revision a90bc33f (cdmlib): some bugfixes for the update script (merge r19034 into trunk)
- 07:39 PM Revision 560df098 (cdmlib): reordering and changing tests for OriginalSOurceType and make second non capital in MeasurementUnit.csv
- 07:38 PM Revision ebd0744c (cdmlib): minor
- 07:23 PM Revision 45287ef7 (cdmlib): Fix non capital meter #3760
- 07:10 PM Revision 7109757a (cdmlib): some bugfixes for the update script
- 04:17 PM Revision dc435632 (cdm-dataportal): switching simple search back to old search and using new luncene bases search only for advances search
- 04:01 PM Revision ff20b28f (cdm-dataportal): #3744: Remove all usage of ICBN, replace by ICNAFP
- 03:34 PM Revision 7f6dcdcf (cdmlib): restoring old findTaxaAndNames controller methods
- 03:01 PM Revision fae36a2a (cdm-dataportal): renaming FeatureNode->children to childNodes [CDM 3.3]
- 02:45 PM Revision d1481c18 (taxeditor): - query parameters are read from wizard page
- - enhanced query's toString() method
- 02:45 PM Revision 6f8d5f80 (cdmlib): - query parameters are read from wizard page
- - enhanced query's toString() method
- 11:56 AM Revision a14ee477 (taxeditor): - implementing transient service layer to use wit ABCD import to not save the data
- 11:26 AM Revision 11aff7aa (cdmlib): adding POST capabilities to rest service endpoint
- 11:26 AM Revision c7533f2e (cdmlib): furher improvement to the TitleAndNameCacheAutoInitializer
- 11:10 AM Revision c9a0cc81 (cdmlib): fix missing taxon.titleCache length ->800 in update script
- 12:24 AM Revision 4138a41e (cdmlib): there is a class now, to do mediawiki export.method exportFromFile does not work proper. images have to be imported
- 12:20 AM Revision b9a19ae2 (cdmlib): there is a class now, to do mediawiki export.method exportFromFile does not work proper. images have to be imported
09/26/2013
- 06:38 PM Revision 7abcdc53 (cdmlib): minor updates to updater
- 06:37 PM Revision 1ad5532c (cdmlib): preliminary fix for ICBN bug #3658
- 06:24 PM Revision 7cf7cd5f (cdmlib): some bugfixes for update script
- 05:45 PM Revision 6c2ad6ce (cdmlib): improving the TitleCacheAutoInitializer and turning it into a TitleAndNameCacheAutoInitializer
- 05:45 PM Revision b9cbcc7c (cdmlib): moving all beaninitializer classes to new package 'eu.etaxonomy.cdm.persistence.dao.initializer'
- 03:55 PM Revision 544878ef (taxeditor): - DataImportSpecimenEditorInput now call cdmlib-ext to query BioCASE provider and calls cmlib-io to use ABCD-import for converting ABCD into SpecimenOrObservationBase objects
- - implemented TransientCdmRepository an TransientOccurenceService for that
- 03:00 PM Revision 59d9c17d (cdm-server): switching project version to 3.3.0-SNAPSHOT
- 02:50 PM Revision 7d436597 (cdmlib): refactoring MatchMode class
- 02:50 PM Revision 4881279a (cdmlib): todo comment regarding #2432 ([E+M][Portal] Implement search for multiple areas)
- 02:50 PM Revision 2a76bd4e (cdmlib): using the recomendet requestPathAndQuery() for logging HTTP requests in controllers
- 02:50 PM Revision b6ace648 (cdmlib): using the new search method in the controlers and fixing a bug with missing grouping_by field
- 02:02 PM Revision 6280e639 (cdm-dataportal): using new freetext taxon search in portal + fixing problem in settings
- 02:02 PM Revision 8faca2e1 (cdm-dataportal): comment to maps
- 01:22 PM Revision 2c5f5b34 (cdmlib): changes on Widgetset
- 01:18 PM Revision 2bad9416 (cdmlib): changes on Widgetset
- 09:08 AM Revision 3c462983 (cdmlib): - fixed BioCASE query XML
09/25/2013
- 05:23 PM Revision d748f4f4 (taxeditor): merge-update from trunk
- 04:56 PM Revision 423c7510 (taxeditor): - added more information to results
- 04:51 PM Revision 85e782b2 (taxeditor): merged latest model changes from trunk
- 04:43 PM Revision 27f5197f (taxeditor): adapting to latest model changes for change of package
- 04:23 PM Revision 2fe1fe8f (taxeditor): Snapshot branch for version 3.3.0-SNAPSHOT
- 04:23 PM Revision 6fb3c431 (taxeditor): Updated version in config files to 3.3.0-SNAPSHOT
- 04:07 PM Revision 46c12f49 (taxeditor): reintegrated model changes from branch 3.3-MC-SNAPSHOT
- 03:54 PM Revision bb38665e (cdmlib-apps): reintegrate cdmlib-app-3.3 branch into trunk
- 03:21 PM Revision 752d2335 (cdmlib): reintegrate cdm-3.3 branch into trunk
- 03:14 PM Revision 85b82fb6 (cdmlib): minor
- 03:13 PM Revision 7eb1f517 (cdmlib): change version of parent pom -> 3.3.0
- 03:12 PM Revision cfcdda3c (cdmlib): change version ->3.3.0, move CdmMetaData, change schema version -> 20130924, fix TaxonServiceSearch test, update update-script
- 01:39 PM Revision 3ee20195 (taxeditor): - moved actual query execution from the wizard to the editor
- 01:38 PM Revision 854a914f (cdmlib): - added hashCode(), equals(), and toString() method to BioCaseQuery
- 01:37 PM Revision a434540d (cdmlib): merge trunk into cdmlib v3.3 branch
- 01:34 PM Revision ccd68eb8 (cdmlib): remove old TermsDataSet
- 01:28 PM Revision d716c44b (cdmlib): merge trunk into cdmlib v3.3 branch
- 01:15 PM Revision e63753b4 (cdmlib): cleaning up
- 01:14 PM Revision 173f67a2 (cdmlib): adding missing type restriction for common names
- 12:44 PM Revision 0ce81abb (cdmlib): comment automated writing of test dataset
- 12:43 PM Revision 6a9ce9d3 (taxeditor): - commented compile errors due to model changes (Ticket #3732)
- 12:42 PM Revision e7cf324d (cdmlib): minor
- 12:05 PM Revision 6ac58758 (taxeditor): - commented compile errors due to model changes (Ticket #3732)
- 11:38 AM Revision 43dcd8e2 (cdmlib): fixing invalid test data
- 11:11 AM Revision b623f722 (taxeditor): merged trunk into branch
- 11:07 AM Revision 5552e3cf (cdmlib): commenting potential bug, see #3728 (DescriptionListPortalController.getDescriptionElementsForTaxon() seems to be using inapproptiate init strategy)
- 11:07 AM Revision 6788c990 (cdmlib): documentation
- 11:07 AM Revision 8657812d (cdmlib): commenting out non working part of test, see #3730 (Taxon.removeTaxonRelation() raises error on update)
- 11:07 AM Revision b75051b1 (cdmlib): all search tests running successful
- 11:07 AM Revision 63c4d12f (cdmlib): implemnting TaxonRelationshipClassBridge to also allow filtering misapplications by distribution, but run into a potential java bug which is really weired the solution i found to circumvent it is documented in TaxonServiceImpl.java
- 11:07 AM Revision e85caaae (cdmlib): TODO comment to the ClassInfoBridge
- 11:07 AM Revision e18a1639 (cdmlib): another TODO comments regarding the AcceptedTaxonBridge
- 11:07 AM Revision 4636717c (cdmlib): another TODO comments regarding the AcceptedTaxonBridge
- 11:07 AM Revision 41bb4c3b (cdmlib): search by synonym also working with distrubution filter. TODO comments to the AcceptedTaxonBridge
- 11:07 AM Revision da9fe05a (cdmlib): adding missing @Override
- 11:07 AM Revision 73785906 (cdmlib): changing test data a little bit
- 11:07 AM Revision 2481bd0b (cdmlib): distribution filter now working for taxon search by common names. commit includes results from research on best way to imnplement this
- 11:06 AM Revision f1fd0785 (cdmlib): refactoring for a lucene cross index search
- 11:06 AM Revision 1b4a1874 (cdmlib): further tests show that cross index search is not working, commenting out these tests for refactoring
- 11:06 AM Revision b2ccab05 (cdmlib): turning off spell check index purging
- 11:06 AM Revision 652fe14a (cdmlib): filtering of lucene searches by distributions basically implemented, needs to be improved though
- 11:04 AM Revision 5c3e7cc7 (taxeditor): reintegrated 3.2.4 SNAPSHOT
- 11:00 AM Revision f6a8dc56 (taxeditor): merged model adaptions to cdmlib 3.2.4 from campanula branch
09/24/2013
09/23/2013
- 05:54 PM Revision 9b2cbc32 (taxeditor): - adapted AbcdImportWizard to model (using input stream as input)
- - added exception logging
- 05:48 PM Revision 5f7fd72e (taxeditor): - added new DataImportEditor for displaying/editing results of specimen search wizard
- - disabled PreservationMethod related widget as they have not been adapted to the model changes yet
- 01:52 PM Revision 6ea38932 (cdmlib): *bug fix for taxonNode which have no classification
- 01:11 PM Revision 9e59c2ac (taxeditor): - @Override annotation
- - fixed some more warnings
- 11:59 AM Revision 81b909ab (cdmlib): \
- 11:57 AM Revision 656c531d (cdmlib): added a simple wizard
09/20/2013
- 06:05 PM Revision 89a75777 (utis-core): more updates for the new GBIF API, including manual merge from Fran's fork
- 04:48 PM Revision fd3df06e (cdmlib): *further adds for wizard
- 04:47 PM Revision 2f8a7a25 (cdmlib): added Wizard, and excel export
09/19/2013
- 06:30 PM Revision d92b6993 (cdmlib)
- 06:30 PM Revision 4a0c2989 (cdmlib): Added method to upload transformed xml to mediwiki
- 06:25 PM Revision 38f21307 (cdmlib): some merging with Lorna
- 05:50 PM Revision 94ac8c33 (cdmlib): Added new classes to import mediwiki files uwing Mediwiki API.
- 04:36 PM Revision 5529882a (utis-core): initial commit for PESI related stuff
- 04:34 PM Revision ee9fc568 (utis-core): updates for new GBIF api, version changes, added version of workflow which targets beta interaction pages
- 03:46 PM Revision 2b38907f (cdmlib): - merged changes from campanula branch
- - added BioCASE query support to cdmlib-ext
- 03:33 PM Revision 64c9b080 (cdmlib): fix ABCD import
- 03:31 PM Revision fb297954 (cdmlib): minor
- 03:23 PM Revision bc0bd9a4 (cdmlib): moving preferences into new package and some minor changes
- 01:36 PM Revision 4fc358e2 (cdmlib): minor
- 01:34 PM Revision f96df645 (cdmlib): refactor Abcd import so that save can be handled separately, not yet complete
- 01:32 PM Revision 6462dfe0 (cdmlib): change cdmApp type in ioConfig to interface #3726
- 01:31 PM Revision 58bafdd8 (cdmlib): minor
- 12:10 PM Revision 37b477d5 (cdmlib): just commit to be able to revert locally
- 10:11 AM Revision b672d5ca (taxeditor): Snapshot branch for version 3.2.4-SNAPSHOT
- 10:11 AM Revision 427996e9 (taxeditor): Updated version in config files to 3.2.4-SNAPSHOT
09/18/2013
- 03:12 PM Revision 197336ef (cdmlib): created local tmp folder to store the mediawiki xml source file
- 03:11 PM Revision a3e32c88 (cdmlib): merge-update from trunk
- 02:46 PM Revision 3d9822eb (cdmlib): commit after an other merge from trunk
- 02:43 PM Revision b1e8b231 (cdmlib): Added cichorieae to test XML output in PublisherTest
- 02:40 PM Revision 0b257e47 (cdmlib): Add getReferences method so references now harvested in the XML output for print publishing.
- 12:21 PM Revision 2e408754 (cdmlib): commit after merging from trunk
- 10:30 AM Revision 411b32b4 (taxeditor): - changed cdm dependency to 3.2.4
- 10:29 AM Revision c7af639c (taxeditor): - added BioCaseQuery to the API
- - adapted taxeditor
- this is EXPERIMENTAL
09/17/2013
- 02:56 PM Revision 810b7215 (cdmlib): merge trunk into v3.3 branch
- 02:43 PM Revision 57b4a945 (cdmlib): *Vaadin Update to 7.1
- *Fixed path in web.xml
*fixed issue with heartbeat
*update of AppWidgetSet - 02:29 PM Revision 34f7342e (taxeditor): - renamed ComboFieldController to ComboDefinedTermController
- 02:27 PM Revision 4f70cce5 (taxeditor): - adapted WaterbodyOrCountry separation
- 11:30 AM Revision 53ada01e (taxeditor): merge-update from 3.3 branch
- 11:19 AM Revision 602b224c (taxeditor): - added debug text field to result wizard page
- 10:42 AM Revision 199ed72a (cdmlib): change parent pom version in 3.3
- 10:41 AM Revision 39e7733f (cdmlib): minor
- 10:40 AM Revision 239cfeb8 (cdmlib): some more changes to CdmPreferences including key size
- 10:37 AM Revision ba5668d3 (cdmlib): Some more changes to Preference service
- 09:49 AM Revision c6c03f97 (taxeditor): - added source code to cdm libs
09/16/2013
- 04:04 PM Revision 22254c3f (cdmlib): just changed paths to relative
- 02:22 PM Revision 2f87b374 (cdmlib): some better implementation for CdmPreferences dao including some tests #3555
- 02:06 PM Revision 4679014d (cdmlib): Added a new output module for print publishing of Mediawiki files.
- 01:13 PM Revision 3a3d2816 (cdmlib): minor
- 12:58 PM Revision 55a9bac0 (cdmlib): move AbstractStringComparator to cdmlib-commons and refactor a bit
- 11:57 AM Revision a3326dd6 (cdmlib): exchange comments on treeNodes for issues related to OrderColumn (#3722)
09/13/2013
- 04:10 PM Revision 63296b3d (cdmlib): removing problematic ids from result data set
- 04:10 PM Revision ec4f0881 (cdmlib): search for misapplied name implemented in findTaxaAndNamesByFullText() also adapting testdata and fixing a big bunch of problems with grouping and other freetext search features
- 04:10 PM Revision 823cf53f (cdmlib): adding dependency for lucene-join
- 04:10 PM Revision 132309a0 (cdmlib): cleaning up
- 04:10 PM Revision 6001b224 (cdmlib): adapting test data to changes in previous commit
- 04:10 PM Revision eeafb0fc (cdmlib): problem of termloading which was overriding hibernate_sequences in testdatasets solved
- 04:10 PM Revision c151707b (cdmlib): first implementation towards a full functional TaxonService.findTaxaAndNamesByFullText() 2
- 04:10 PM Revision 2d1bfb73 (cdmlib): first implementation towards a full functional TaxonService.findTaxaAndNamesByFullText()
- 04:10 PM Revision df89da4d (cdmlib): adding method documentation
- 02:06 PM Revision f352fc6f (cdmlib): javadoc for amplification
- 01:30 PM Revision d0fbf21c (cdmlib): some bugfixes for TaxonNode sorting #3508
09/12/2013
- 09:30 PM Revision e6c18d2b (cdmlib): minor
- 09:30 PM Revision b79c5c7b (cdmlib): minor
- 02:55 PM Revision 9510dca4 (cdmlib): partial implementation of CDM preferences (dao, service and enums): #3555
- 02:49 PM Revision 89985892 (taxeditor): - added source code to cdm libs
- 02:49 PM Revision 877628fe (taxeditor): - added specimen search wizard (no functionality yet)
- 02:48 PM Revision 659ffe12 (cdmlib): rename ISectionBase -> ISection
- 02:31 PM Revision 0b49080a (cdmlib): implement Section as ReferenceType #2853
- 02:22 PM Revision 7feeeef0 (cdmlib): as my last branch is broken i start a new one
- 01:48 PM Revision 5f23090b (cdmlib): Javadoc for DnaMarker
- 01:48 PM Revision 101e1952 (cdmlib): Javadoc for molecular classes
09/11/2013
- 11:49 PM Revision dea864ea (cdmlib): minor
- 06:43 PM Revision f8d69f2a (cdmlib): - fixed bug #3695 (Description elements do not appear in data portal if there is only one element)
- 05:03 PM Revision 00e9083c (cdmlib): rename materialMethodTerm -> definedMaterialOrMethod
- 04:31 PM Revision ba08dfd7 (cdmlib): final implementation of MaterialOrMethodEvent, Cloning, PreservationMethod, ... #3360
- 02:36 PM Revision b20bd122 (cdmlib): as reintegration failed i copied the statistic files manually into the trunk, and now commit
- 02:23 PM Revision 1219d74b (cdmlib): as reintegration failed i copied the statistic files manually into the trunk, and now commit
09/10/2013
- 05:16 PM Revision 7689590d (cdm-dataportal): fixing broken distribution maps for palmweb
- 05:16 PM Revision 6bbf4d45 (cdm-dataportal): avoiding php notices - cleaning code
- 04:25 PM Revision 6f1a217c (cdm-dataportal): implementing #3710 (Refresh button for cdm node type pages)
09/09/2013
- 04:10 PM Revision 77884310 (cdmlib): add serId
- 03:54 PM Revision 03688f95 (cdmlib): update script for vocabulary representations #3708 and some bugfixes on vocabularies and code
- 03:01 PM Revision 4792c243 (cdmlib): minor
- 02:59 PM Revision 9e2a5d33 (cdmlib): add new derivation events #3714
- 12:00 PM Revision 80ee2b55 (cdmlib): minor
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