Activity
From 07/02/2013 to 07/31/2013
07/31/2013
- 08:05 PM Revision 5b8d05af (cdmlib): exclude <> features from logging
- 08:03 PM Revision 04fd5f07 (cdmlib-apps): some minor changes to FM activator
- 01:30 PM Revision 2a233487 (cdmlib)
07/30/2013
- 06:12 PM Revision d2fd2a4c (cdm-dataportal): upgrading OpenLayers to 2.13.1; refactoring cdm_openlayers maps, and thus fixing problems
- 04:41 PM Revision 03903893 (cdmlib): updated search mechanism produce more accurate results
- 04:00 PM Revision f1b79c14 (cdmlib): the controller can now be called with classification name or uuid to get statistics for this particular classification
- 03:57 PM Revision 9754fbb7 (cdmlib): some cosmetic changes
- 03:54 PM Revision 18b4c740 (cdmlib): save actual state
- 12:02 PM Revision 45112b6a (cdmlib): ManagementController : reverting back to default list when no class name is 'manually' specified
- CdmMassIndexer : removed requirement for type array param to be always need as we have a default indexed classes list.
07/29/2013
- 02:41 PM Revision 6635b6cf (cdmlib): ManagementController : updated reindex method to include multi-param 'type' which allows to choose the classes to be indexed,
- also added init binder methods to bind the 'type' string input to cdmbase classes
CdmTypePropertyEditor : corrected f... - 02:39 PM Revision ece6cbb6 (cdmlib): ICdmMassIndexer : added methods to clear and add classes to the list of indexed classes
- CdmMassIndexer : implemented the new methods in ICdmMassIndexer
TaxonServiceSearchTest : updated test to initialise t... - 11:44 AM Revision 3fd8f26b (cdmlib): added excluded and unplaced fields since lucene checks to see if these are null.
07/26/2013
- 03:33 PM Revision 2f50e942 (cdmlib): added @IndexedEmbedded annotation to the taxonBases set to allow the TaxonBase class bridges to work
- 02:54 PM Revision 16495c16 (cdmlib): NameCatalogueController : updated controller to improve exact and fuzzy name search to use lucene document only searches
- NameSearch : updated dto to accomodate lucene documents
- 02:52 PM Revision ed07b709 (cdmlib): Added ANALYZE setting for the atomised name components to help the fuzzy search
- 02:50 PM Revision 55d7bb64 (cdmlib): added class bridges for class info and accepted taxon information
- 02:42 PM Revision cb312388 (cdmlib): INameService : added findByNameExactSearch to return lucene search documents for name searches
- NameServiceImpl : implemented and updated exact / fuzzy name searching
- 02:30 PM Revision 8287f797 (cdmlib): ClassInfoBridge : New class bridge to set class information in the index
- AcceptedTaxonBridge : New class bridge to set accepted taxon information in the index
- 01:52 PM Revision d494a61d (cdmlib): ISearchResultBuilder : added method to return lucene document only results
- SearchResultBuilder : implemented method to return lucene document only results
DocumentSearchResult : new class whic...
07/25/2013
- 06:19 PM Revision 336de0a4 (cdmlib): just save actual state
- 04:51 PM Revision c15f42ec (cdmlib): Added ignore to print publishing test.
- 04:31 PM Revision abfc040c (cdmlib): just save actual state
- 04:28 PM Revision 50541b20 (cdmlib): just save actual state
- 04:28 PM Revision 5132e66a (cdmlib): just save actual state
- 12:22 PM Revision 3eb8fbfb (cdm-dataportal): separating out map functionality in extra file
- 10:42 AM Revision 7c8ca82e (cdmlib): minor changes
07/24/2013
- 12:22 PM Revision 14a1655f (cdm-dataportal): adapting test framwork to changes in selenium api
- 11:25 AM Revision 0b606c0d (cdm-dataportal): bugfix
- 11:08 AM Revision 75f01b13 (cdm-dataportal): bugfix
- 11:03 AM Revision d63803ea (cdm-dataportal): bugfix
- 10:52 AM Revision 4e9ba486 (taxeditor): removed pop-up dialog for original source type and instead directly set the default type as PrimaryTaxonomicSource
- 10:41 AM Revision 49c2cd03 (cdmlib): logging of request method in remote controllers
- 10:41 AM Revision d595ca2b (cdmlib): support for POST requests to /portal/descriptionElement/byTaxon and /portal/descriptionElement/byFeature
- 10:38 AM Revision fa35ed26 (cdm-dataportal): adding full support for POST requests
- 10:38 AM Revision 2ebf0428 (cdm-dataportal): adding full support for POST requests
- 09:48 AM Revision e321340c (cdmlib): test SecurityTest.testTaxonDeleteAllow_2() adapted, changed taxonService.delete(Taxon) to taxonService.deleteTaxon(Taxon) and adapted the xml file -> Ticket #3086
- add a test for the deletion of the taxondescriptions (ticket #2982)
07/23/2013
- 05:34 PM Revision 1c4f6bb6 (taxeditor): FIME:3.3MC tags for code to be aligned with the 3.3 model changes related to the 'Uses' perspective
- 05:32 PM Revision cbc4c164 (taxeditor): removed commented code
- 05:30 PM Revision 6873dc8e (taxeditor): added method to filter DefinedTerm objects by TermType
- 05:29 PM Revision 6a58183a (taxeditor): GeneralDetailElement : removed elevation element
- FieldObservationDetailElement : calling new create function for filling in DefinedTerm combos (still requires a model...
- 05:26 PM Revision 0574feac (taxeditor): check to see if entity is null before loading by hibernate
- 05:24 PM Revision 9dda5772 (taxeditor): CdmFormFactory : added createmethods for GatheringEventUnitElement, MinMaxTextSection and createDefinedTermComboElement
- MinMaxTextSection : new section for the min / max / text values of elevation / distance to ground / distance to water...
- 01:31 PM Revision f9726ce7 (taxeditor): merge-update from trunk
- 01:18 PM Revision 89e7a3e1 (taxeditor): - reverted accidentally commited changes of campanula branch
- 11:17 AM Revision 00e1ad00 (cdmlib): some changes for object deletion, especially the implementation of the childhandling.
- 02:46 AM Revision 1747fb8f (cdmlib): update update script such that no validation errors exist anymore
07/22/2013
- 07:43 PM Revision 475a7212 (taxeditor): reintegrated campanula branch: removed enum EntityDetailType and all its uses
- 07:42 PM Revision 46f21ce3 (taxeditor): merge-update from trunk
- 07:41 PM Revision 8743e9e9 (taxeditor): merge-update from trunk
- 07:03 PM Revision 5a479f39 (cdmlib): change some names in molecular and update the update script
- 06:57 PM Revision 0dc1fdaf (cdmlib): add references as URL extensions to DwcA-in
- 06:52 PM Revision 28744727 (cdmlib): add javadoc
- 06:41 PM Revision 2874935c (taxeditor): reintegrated campanula branch: removed enum DetailType and all its uses
- 06:13 PM Revision ef06e613 (taxeditor): merge-update from trunk
- 06:13 PM Revision 8b178e73 (taxeditor): added comments
- 06:07 PM Revision c25ddfcf (taxeditor): changed TimePeriod object to TimePeriodParser
- 06:03 PM Revision 3dfb5304 (taxeditor): AnnotatedLineEditor : added check and code for the case when the creator also saves the entity
- NewObjectHandler : removed popup for title cache
DynamicNewObjectMenu : menu item for SpecimenOrObservationType.Field... - 05:58 PM Revision 6ab5c17a (taxeditor): updated wizard to return new DerivedUnit for given type
- 05:55 PM Revision 5a26bee6 (taxeditor): NumberWithLabelElement : added getDouble method
- CdmFormFactory : updated create methods for creating elements for DefinedTerm and DerivedUnit objects
DateDetailSecti... - 05:49 PM Revision 40ffaa10 (taxeditor): UseRecordDetailElement : FIXME tag for 'Uses' code
- SpecimenTypeDesignationElement : updated construction of DervivedUnit using default SpecimenOrObservationType
ScopeRe... - 05:41 PM Revision e92bdb50 (taxeditor): DescribedSpecimenSection : updated element for change in TaxonDescription which now has a single specimen object instead of a list
- DescriptionDetailElement : Added FIXME tag for feature tree code (which is not used currently). Needs furthur discuss...
- 05:35 PM Revision dbe52ecb (taxeditor): SourceCollectionDetailSection : updated construction of DervivedUnit using SpecimenOrObservationType
- SpecimenCollectionDetailSection : updated construction of DervivedUnit using SpecimenOrObservationType
GeneralDetailE... - 05:30 PM Revision c158c2cf (taxeditor): SpecimenOrObservationTypeSelectionDialog : new dialog which allows user to choose from known SpecimenOrObservationTypes
- AbstractFilteredCdmResourceSelectionDialog: added check to make sure that wizard does return a non-null entity
- 05:25 PM Revision 0f7ee425 (taxeditor): added sorting for the TermType Enum list and added separators between 'Other' vocabularies and known vocabularies
- 05:24 PM Revision 41513bae (taxeditor): declared savesEntity method to return a flag indicating whether the creator class also saves the entity
- 05:22 PM Revision c0692f1e (taxeditor): OccurrenceCreator: updated createNewEntity method to return wizard created object based on given SpecimenOrObservationType, added comparator for the key label pairs map
- Other classes : implemented savesEntity method to return a flag indicating whether the creator class also saves the e...
- 05:09 PM Revision 5b087075 (taxeditor): - completely removed EntityDetailType enum and all its uses
- 04:47 PM Revision 136e16b1 (cdmlib): merge trunk to branch cdm-3.3
- 04:07 PM Revision 59c2c696 (cdmlib): merge trunk to cdm-3.3 branch
- 03:41 PM Revision 691f8353 (cdmlib): reintegrate branch from patricia (debug userinteraction) into trunk
- 03:39 PM Revision 9041c205 (cdmlib): update branch with actual trunk
- 03:33 PM Revision 2a99f685 (cdmlib): add param for user interaction
- 03:04 PM Revision e418de6b (cdmlib): minor
- 01:50 PM Revision 204d7987 (taxeditor): merge-update from trunk
- 12:35 PM Revision 98cfec8f (cdmlib): #3626 (description feature and it's children missing in Flora Malesiana)
- 12:33 PM Revision a08fca00 (cdmlib): some changes to the update script
- 12:31 PM Revision a5b11b44 (cdmlib): set max length for idInVocabulary
- 11:13 AM Revision fe8220ae (cdm-dataportal): updating selenium test code to new api
07/21/2013
- 02:10 AM Revision 2083d133 (cdmlib): use strings for recordBasis (#2615 und #3544)
- 01:56 AM Revision 99375cb9 (cdmlib): use strings for rankClass (#2615 und #3544)
- 01:05 AM Revision b17af11f (cdmlib): use strings for sourcetypes (#2615 und #3544)
07/19/2013
- 01:36 PM Revision ee7cb616 (taxeditor): merge-update from trunk
- 01:36 PM Revision b5724324 (taxeditor): deleted merge-info
- 01:35 PM Revision 67b5ea6c (taxeditor): merge-update from trunk
- 01:33 PM Revision ae9d8f29 (taxeditor): deleted merge-info
- 01:32 PM Revision 46f08714 (taxeditor): deleted merge-info
- 12:58 PM Revision f8989f45 (taxeditor): added merge-info by merging with trunk
- 12:47 PM Revision 03db5595 (taxeditor): added merge-info to sub folder my merging with sub folder from trunk
- 11:57 AM Revision 42147b11 (taxeditor): added merge-info to sub folder my merging with sub folder from trunk
- 10:28 AM Revision 3e438be9 (taxeditor): merge-update from trunk
- 12:29 AM Revision 5f9ffdeb (cdmlib): use strings for termtypes (#2615 und #3544)
07/18/2013
- 06:26 PM Revision 0cec47a5 (taxeditor): ScopeRestrictionSection : creating new DefinedTerm with TermType:Scope
- DetailsViewer : removed (for the moment commented out) DescriptionSourceSection since this is already in the suppleme...
- 06:23 PM Revision 9cb4269e (taxeditor): added original source type selection dialog for creating Identifiable source
- 06:20 PM Revision 4f1767d9 (taxeditor): cretating new IdentifiableSources and DefinedTerms using (OriginalSource/Term)Types
- 06:18 PM Revision 5967bf6b (taxeditor): AbstractFilteredCdmEnumSelectionDialog : new abstract class for a filtered selection dialog on IEnumTerm objects
- OriginalSourceTypeSelectionDialog : first concrete implementation of AbstractFilteredCdmEnumSelectionDialog for Origi...
- 04:50 PM Revision 37a3cbc8 (cdmlib): fix characters problem in KeyImport
- 04:49 PM Revision b8824884 (cdmlib): fix characters problem in KeyImport
- 04:40 PM Revision acb8bc98 (taxeditor): merge-update from trunk
- 04:36 PM Revision 139902da (taxeditor): - completely removed DetailType enum and all its uses
- 03:36 PM Revision 49e39c10 (taxeditor): replaced term editor menu with dynamic menu factory
- 03:30 PM Revision e717eb17 (taxeditor): TermLabelProvider : added styling to distinguish between vocabularies and terms
- DefinedTermMenuFactory : Factory to dynamically build recursive menu for defined term editor
DefinedTermEditor : main... - 03:27 PM Revision cc26e350 (taxeditor): updated operations to use the new TermEditorInput and also added pop-up warnings when,
- - user tries to delete a CDM system vocabulary / term
- user tries to add a defined term base object to a vocabulary... - 03:24 PM Revision 6931cd11 (taxeditor): updated handlers to be more consistent and use the new TermEditorInput which stores the in memory list of vocabularies
- OpenDefinedTermMenu : not used anymore
- 03:21 PM Revision 27e3249a (taxeditor): with the move to term types in model change 3.3 we no longer need term specific editor inputs, all term specific inputs have been deleted.
- TermEditorInput : sincle term editor input which handles all cases (for all term types)
AbstractDefinedTermEditorInpu... - 03:11 PM Revision 6c43f741 (cdmlib): allow taxon status 5 for occurrences in BM import
- 03:10 PM Revision d367e2a1 (cdmlib): change on logging, try find error for stracktrace handling
- 03:09 PM Revision 86a6f5ba (cdmlib): change on logging, try find error for stracktrace handling
- 03:08 PM Revision 9f48bb63 (cdmlib): merging trunk to pesiimport3
- 03:02 PM Revision 40368de1 (cdmlib): VocabularyServiceImpl.java, TermVocabularyDaoImpl.java, IVocabularyService.java, ITermVocabularyDao.java : added method (findByTermType) to find all vocabularies related to a particular term type.
- TermType.java : Added method (getEmptyDefinedTermBase) to return DefinedTermBase object corresponding to the (this) T...
- 03:00 PM Revision 0c15025e (cdmlib): change on logging, try find error for stracktrace handling
- 02:47 PM Revision 8b8d0e2f (cdmlib): merging trunk to pesiimport3
- 02:45 PM Revision 4d67e0b7 (cdmlib): minor
- 02:41 PM Revision a40aae79 (cdmlib): minor
- 02:35 PM Revision 9811b011 (cdmlib): minor
- 01:33 PM Revision aeb2b855 (cdmlib): change on logging, try find error for stracktrace handling
- 10:38 AM Revision 6b42cb32 (cdmlib): add materials and methods feature to markup
07/17/2013
- 06:50 PM Revision 4e641ba7 (cdmlib): remove imports
- 08:50 AM Revision dd7f4987 (cdmlib): deletionconfigurator tests and implementations
07/15/2013
- 10:28 PM Revision 42414138 (cdmlib): implement some more term hierarchies and isKindOf and getGeneralizationOf(recursive) for IDefinedTerm #3611
- 09:27 PM Revision 4e6343a4 (cdmlib): added isKindOf and getGeneralisationOf(recursive) to IEnumTerm #3611
- 02:22 PM Revision 8278620c (cdmlib)
- 09:18 AM Revision 68788da9 (cdmlib): fixing delete functionality and adding tests
- 05:34 AM Revision c398ed0b (cdmlib): implemented IEnumTerm and its hierarchies #3611, #3618
07/14/2013
- 10:51 PM Revision cc3a997a (cdmlib): Separate interface for DefinedTermBase and enumerations #3618
- 10:13 PM Revision a8541d12 (cdmlib): fix test after removing media from specimenOrObservation #3597
- 10:04 PM Revision 7d6a432d (cdmlib): remove superflous test from NameServiceImplTest
- 09:48 PM Revision bf0b0699 (cdmlib): Remove media from SpecimenOrOBseravationBase #3597
- 08:29 PM Revision 3a1cd9fb (cdmlib): devided TimePeriod and TimePeriodParser #3617
- 06:55 PM Revision 69637162 (cdmlib): fix failing tests for adding descriptionElementBase.timeperiod #3312 and clean up TimePeriod class
- 06:18 PM Revision c9c6b8e2 (cdmlib): add timeperiod to descriptionElementBase #3312
- 05:58 PM Revision fc3346c1 (cdmlib): harden the EventBase.timePeriod setter
- 05:27 PM Revision 6500a613 (cdmlib): javadoc
- 05:04 PM Revision d47acaf2 (cdmlib): update script for genbank accession removal #3552
- 04:51 PM Revision 9fdefe59 (cdmlib): update script (first part) for new specimen handling in DescriptionBase #3571
- 04:44 PM Revision 3733052b (cdmlib): update script for new mediaSpecimen attribute #3614
- 04:36 PM Revision bd07c1ce (cdmlib): remove descriptive system from description base #2202
- 04:22 PM Revision ace720cf (cdmlib): Add MediaSpecimen (still missing schema updater and tests) #3614
- 02:53 PM Revision f7678187 (cdmlib): first implementation of new molecular package #3360
- 12:23 PM Revision 8accd608 (cdmlib): add serial version id
- 12:21 PM Revision 0014d956 (cdmlib): moving code
07/12/2013
- 03:57 PM Revision 2f1d893f (cdmlib): minor
- 03:44 PM Revision 60068a72 (cdmlib): remove import
07/11/2013
- 04:26 PM Revision 2a30fa7c (taxeditor): updated classpath to 3.2.3 version
- 02:29 PM Revision 7fb736d8 (taxeditor): merge-update from trunk
- 02:19 PM Revision c6fe549a (taxeditor): - simplified code/refactoring
- - fixing warnings
- 02:17 PM Revision c8b2e7f8 (taxeditor): merge-update from trunk
- 02:00 PM Revision 2312fc7b (taxeditor): merge-update from trunk
- 01:58 PM Revision eccca676 (taxeditor): merge-update from trunk
- 01:16 PM Revision 8bf0afdb (cdmlib): minor
- 01:02 PM Revision 32c3be39 (cdmlib): implement kindOf for term types #3161
07/10/2013
- 04:28 PM Revision d2d8e95d (taxeditor): refactored NumberWithLabelElement to a single constructor with java.lang.Number as argument
- 04:05 PM Revision 124424d0 (taxeditor): updates for 3.3 model changes. Phase two commit, which contains method changes / updates
- 03:38 PM Revision 49a64920 (taxeditor): Aligning Editor with 3.3 model changes. First phase commit which updates only the classes.
- Branch not compilable at the moment.
- 02:00 PM Revision 6b056e8b (cdmlib-apps): update vibrant source name
- 10:43 AM Revision f97cc8c6 (cdmlib): refactor app-import proibiosphere
- 10:42 AM Revision 18564c8d (cdmlib): refactor specimen and taxonx2013
- 10:35 AM Revision 3e6b9ed7 (cdmlib): create branch for pro ibiosphere dev
- 10:33 AM Revision e508e82d (cdmlib): create branch for pro ibiosphere dev
- 10:08 AM Revision 754e5a32 (cdmlib): merged trunk
07/09/2013
- 12:14 PM Revision a2632d72 (cdmlib): minor
07/08/2013
- 12:45 PM Revision 5c88054c (cdmlib): compile fix for updater
- 12:39 PM Revision 51a0db3f (taxeditor): creating branch for 3.3 cdmlib model changes
07/05/2013
- 04:08 PM Revision 71be2731 (cdmlib): delete not needed Schema Updater
- 03:55 PM Revision cfe9193f (cdmlib): change Exception type NoSuchMethod -> DatabaseTypeNotSupportedException #3592
- 03:45 PM Revision ff3882c8 (cdmlib): Rename RightsTerm -> RightsType #1306
- 02:31 PM Revision 05911eca (cdmlib-apps): update pom docu
- 02:23 PM Revision c44cf1e0 (cdmlib): minor
07/04/2013
- 04:31 PM Revision 4a1716d7 (utis-core): update version and documentation for beta, stable workflow and update script
- 04:15 PM Revision 74c0253c (utis-core): update script now includes change of drf-workflow artifact version
- updated data_refinement_workflow.t2flow to make it stable
- 04:11 PM Revision 6fb5b356 (utis-core): added beta (snapshot) version of workflow.
- added script to update snapshot to stable version
- 02:43 PM Revision d2a6f45e (cdmlib): add isonym relationship (#2901) and original spelling (#2874)
- 02:39 PM Revision 6257c2ab (cdmlib): minor
- 10:46 AM Revision d64237a9 (utis-core): adding workflow
07/03/2013
- 08:07 PM Revision e4ef4d83 (cdmlib): add isonym relationship (#2901) and symmetric, transitiv to term updater.
- 07:02 PM Revision ae736720 (cdmlib): add name relationship type "original spelling for" #2874
- 06:14 PM Revision 28923905 (cdmlib): implement CDMPreferences #3555
- 06:08 PM Revision 726194ff (cdmlib): implement CDMPreferences #3555
- 04:17 PM Revision d70e5db5 (cdmlib): Merged the latest changes from the trunk into the branch ui-gwt
- 03:53 PM Revision 9347564c (cdmlib): Make Specimen - SpecimenDescription one-to-many #3571
- 02:13 PM Revision e844aace (cdmlib): *some more changes at parent pom.xml, in order to compile vaadin's widgetset properly
- 01:44 PM Revision 9fe1b3da (cdmlib): *cleaning the repository from compiled data of the widgetset
- *in order to generate these files do a mvn vaadin:update-widgetset install
- 01:38 PM Revision b7c5e25f (cdmlib): *check in of parent pom.xml which include vaadin specific changes
- *renewed widgetset of vaadin version 7.0.7
- 01:31 PM Revision 382036e8 (cdm-server): updated project version to 3.2.3-SNAPSHOT
- 12:16 PM Revision b93b4b03 (cdmlib): changed cache folder to save under user home dir
- 12:12 AM Revision cc2a20a3 (cdmlib): implement sortIndex for TaxonNode (#3508)
- 12:09 AM Revision efdb6847 (cdmlib): implement sortIndex for TaxonNode and remove usedSynonym from addChildNode methods (#3508)
07/02/2013
- 06:45 PM Revision 2494fa1d (cdmlib): add stacktrace to log
- 11:18 AM Revision d535f4fb (cdmlib): renaming CategoricalData.states -> stateData (#2923)
- 11:02 AM Revision 0f0f606a (cdmlib): make Sequence-PhylogeneticTree ManyToMany (#2540)
- 10:56 AM Revision ddbcdcf3 (utis-core): updated main pom file for maven repo settings and changing jar name
- AggregateChecklistClient,BgbmEditClient
- 10:53 AM Revision ca2c7b03 (utis-core): adding project files
- adding taverna plugin sub-project
- 10:39 AM Revision 94ff3012 (cdmlib): renaming CategoricalData.states -> stateData, update Lucene search (#2923)
- 10:24 AM Revision cd3908b7 (cdmlib): update tests for rename states to stateData #2923
- 10:15 AM Revision 4349acec (cdmlib): renaming CategoricalData.states -> stateData (#2923)
- 10:00 AM Revision f3dabfca (cdmlib): resizing titleCache and fullTitleCache (#1592) and renaming CategoricalData.states -> stateData (#2923)
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