Activity
From 02/19/2013 to 03/20/2013
03/20/2013
- 07:36 PM Revision b5519d3a (cdm-dataportal): fixing name rendering
- 04:07 PM Revision d3d16997 (cdmlib): categories work now
- 03:45 PM Revision 8d9c05d7 (cdmlib): fixing depencency problem
- 02:56 PM Revision e459d98b (cdmlib): stylesheet to translate CDM exports (xml) to mediawiki pages
- 10:46 AM Revision f0aafea6 (cdmlib-apps): updated xpert integration pom
- 10:45 AM Revision 6ec32685 (cdmlib-apps): update app-import pom
- 10:44 AM Revision 2d138fa6 (cdmlib-apps): updated eflora pom
- 10:42 AM Revision bbd4103c (cdmlib-apps): updated pesi pom
03/19/2013
- 02:52 PM Revision da3efc7b (cdm-server): setting correct snapshot version manually: 3.2.0-SNAPSHOT
- 02:15 PM Revision 7a976842 (cdmlib): setting correct snapshot version manually: 3.2.0-SNAPSHOT
- 01:50 PM Revision 9e0cba10 (cdmlib): [maven-release-plugin] prepare for next development iteration
- 01:50 PM Revision dfc19d68 (cdmlib): [maven-release-plugin] prepare release cdmlib-parent-3.2
- 10:05 AM Revision 2bdf5f11 (cdm-dataportal): markers and annotations for specimens
- 10:05 AM Revision 4ae6064e (cdm-dataportal): markers and annotations for specimens
- 10:05 AM Revision d52c100e (cdm-dataportal): minor javascript syntax issues
- 10:04 AM Revision f8305818 (cdmlib): portal controller: marker.makerType
03/18/2013
- 06:44 PM Revision 4acd90aa (cdmlib): remove build.xml from cdmlib-persistence. It was never needed.
- 05:33 PM Revision d9563c8a (cdmlib-apps): update cdmlib version in cdmlib-apps
- 05:29 PM Revision 9feefc7d (cdmlib): check if type of synonym relation is not null
- 05:01 PM Revision 3902bd1a (taxeditor): commented check to allow for the possibility of moving taxon with homotypic synonyms to a synonym
- 04:30 PM Revision 81d26cf3 (cdmlib): added possibility to move accepted taxon (with homotypic synonyms) to a synonym
- 02:52 PM Revision 861ebadd (cdmlib-apps): copy main method for abcd and synthesys excel import testing
- 02:46 PM Revision 996a15d5 (cdmlib): replace pom.xml
- 02:46 PM Revision be709878 (cdmlib): merge branche specimen import abcd and synthesys
- 01:49 PM Revision cb312b97 (cdmlib): integrating trunk to hibernate4 branch. Probably no real changes.
- 11:44 AM Revision 8796b32c (cdm-server): [maven-release-plugin] prepare for next development iteration
- 11:44 AM Revision c060ae96 (cdm-server): [maven-release-plugin] prepare release cdm-server-3.1.4
- 11:16 AM Revision aea832d3 (cdmlib): [maven-release-plugin] prepare for next development iteration
- 11:16 AM Revision 2322e931 (cdmlib): [maven-release-plugin] prepare release cdmlib-parent-3.1.4
03/16/2013
03/15/2013
- 08:56 PM Revision b386ae48 (cdm-dataportal): ahah-content, cdm_dynabox, footnotes as real jQuery plugins and fixing #3272 (Footnote highlighting and ahah content are not workin in Dynabox) by listening to custom DOM event
- 02:29 PM Revision 34dd7be9 (cdm-dataportal): paging for specimens implemented, common pager functions modified also for taxon search
- 02:29 PM Revision 733a5a26 (cdm-dataportal): harmonizing image thumbnail caption font size
- 02:26 PM Revision f5db5aee (cdmlib): paging mechanism of pageByAssociatedTaxon() fixed
03/14/2013
03/13/2013
- 11:34 PM Revision 3a874294 (cdm-dataportal): typo
- 11:32 PM Revision ccde8251 (cdm-dataportal): restructuring settings
- 11:16 PM Revision a950f2f9 (cdm-dataportal): Lists all Media found in an any TaxonDescription, NameDescription, SpecimenOrObservationBase, DnaSample Chromatograms, etc. associated with this taxon for #3305 (Collect images via taxon relations)
- 11:10 PM Revision d8815cf0 (cdmlib): Lists all Media found in an any TaxonDescription, NameDescription, SpecimenOrObservationBase, DnaSample Chromatograms, etc. associated with this taxon for #3305 (Collect images via taxon relations)
- 04:12 PM Revision 2196c738 (cdm-dataportal): splitting locus and locus description
- 02:31 PM Revision 9b2e2c97 (cdm-dataportal): fixing intendation of specimen details
- 02:31 PM Revision eeb98da8 (cdm-dataportal): missing field added and sort order fixed for #3329 (Implement DNASample for Dataportal display)
- 01:27 PM Revision e6c5a8ab (cdmlib): circumventing missing sequence service to get annotations
- 10:52 AM Revision 19767ae7 (cdmlib): adding default case to switch statement in ReferenceType.getCacheStrategy()
- 10:46 AM Revision 4985d440 (cdmlib): code with now effect commented out
03/12/2013
03/11/2013
- 04:34 PM Revision 419886d9 (cdm-server): hope ...
- 04:31 PM Revision 76a28911 (cdm-server): mvn 2 compliance
- 04:24 PM Revision 92f0d02c (cdm-server): configuring localhost Maven Repository
- 03:48 PM Revision 09872fe4 (cdm-server): always take latest snapshot dependency
03/08/2013
- 06:10 PM Revision 1b57b3c1 (cdm-dataportal): missing fields for dna sample display for #3329 (Implement DNASample for Dataportal display)
- 06:10 PM Revision 1a6c9ee0 (cdmlib): missing fields for dna sample display for #3329 (Implement DNASample for Dataportal display)
- 03:33 PM Revision c7f8e919 (cdmlib): handling null value
- 03:30 PM Revision 0de9cf51 (cdm-dataportal): implementing dna sample display for #3329 (Implement DNASample for Dataportal display)
- 12:37 PM Revision 338ac480 (cdmlib): Added a temporary test class for testing the XML creation for print publishing.
- 10:26 AM Revision c12835dd (taxeditor): added new oprhaned taxa icon
- 10:25 AM Revision b4ca72fe (taxeditor): SearchResultLabelProvider : display new orphaned-taxa image icon for orphaned taxa
- AbstractGroupedContainer : updated 'isNameUsedMultipleTimes' to factor in orphaned taxa
TaxonEditorInput : added disp... - 10:07 AM Revision 1a22121a (cdmlib): TaxonNodeServiceImpl : added clearing of relation sets
- TaxonDaoHibernateImpl : added 'isOrphaned' field to hql query for building UuidAndTitleCache objects
- 10:02 AM Revision bbb1400c (cdmlib): UuidAndTitleCache : added new member isOrphaned (new constructor + getter)
- TaxonBase : added getIsOrphaned declaration
Taxon : added getIsOrphaned definition
Synonym : added getIsOrphaned defi...
03/07/2013
- 10:43 PM Revision 1efe13d4 (cdmlib): remove import
- 10:42 PM Revision 9214e186 (cdmlib): minor
- 10:41 PM Revision dca4d4c1 (cdmlib): add lazy load GenBankAccession test
- 05:16 PM Revision 0e40f189 (cdmlib): TransmissionEngineOccurrence now creates descriptions tagged with MarkerType: COMPUTED
- 05:16 PM Revision ddf0eb46 (cdmlib): adding new MarkerType: COMPUTED
- 05:16 PM Revision 0397a6c1 (cdmlib): adding missing records to the test TermsDataSet
- 05:16 PM Revision 1507f5a0 (cdmlib): adding missing default case for switch
- 05:16 PM Revision 4578b552 (cdmlib): removing variable assignment with no effect
- 04:36 PM Revision 1dd924fa (cdmlib): Allow Locus to be loaded by javassist (fixing #3340)
- 03:44 PM Revision 16dd4184 (cdm-dataportal): fixing max zoom level in maps - default options where not used
- 02:50 PM Revision 788c31d0 (cdm-dataportal): commenting
- 02:50 PM Revision bdcb2628 (cdm-dataportal): Foonotes and typedesignations of the accepted taxon will also and only be rendered in the homotypic synonymy group even if the group is empty - removing dead code
- 02:50 PM Revision 15b7c460 (cdm-dataportal): Foonotes and typedesignations of the accepted taxon will also and only be rendered in the homotypic synonymy group even if the group is empty
- 02:50 PM Revision ff4f2e07 (cdm-dataportal): more test for typedesignations
- 01:34 AM Revision 392e3504 (cdmlib): minor
03/06/2013
- 09:41 AM Revision 3dceedb5 (cdm-dataportal): smaller spacing between homotypic synonymy groups
- 09:38 AM Revision 119273a4 (cdm-dataportal): removing unused launch configs
- 09:38 AM Revision 4ce833f2 (cdm-dataportal): fixing protologue icon url
- 01:32 AM Revision a48d3260 (cdmlib): some more dependency changes #3332
- 01:26 AM Revision e9d13054 (cdmlib): parent pom update
- 01:17 AM Revision 66634aaa (cdmlib): update some further dependencies
03/05/2013
- 10:45 PM Revision 072d19a3 (cdmlib): minor typo
- 08:13 PM Revision f338f8bd (cdmlib): Added a new Controller and DTO classes to create a flattened structure for presentation of Polytomous keys.
- 06:48 PM Revision a27c1026 (cdmlib): Moved methods to superclass AbstractController and refactoring.
- 05:40 PM Revision b4764a47 (cdmlib): updated jdom dependency in cdmlib-print
- 05:01 PM Revision 16eee8e1 (cdmlib): minor
- 05:00 PM Revision 135da351 (cdmlib): adapt benchmark test (compile error before)
- 04:58 PM Revision 8e78a64c (cdmlib): update a set of cdmlib dependencies (not yet spring, hibernate, and other critical ones)
- 04:55 PM Revision 47f5f914 (cdmlib): update a set of cdmlib dependencies (not yet spring, hibernate, and other critical ones)
- 04:53 PM Revision e61f044e (cdmlib): update wrong interface type for benchmark test
- 04:32 PM Revision 5132ede4 (cdmlib): update all cdmlib dependencies except for those creating test problems, spring, hibernate, jdbcs, Xerces and some others
- 01:44 AM Revision 35e279bc (cdmlib): minor
- 01:42 AM Revision 337c585e (cdmlib): commit merge from trunck
- 01:29 AM Revision e0c3ab58 (taxeditor): some more TaxEditor dependencies
- 12:46 AM Revision 9017ed0f (cdmlib): add httpcomponents/http-core
03/04/2013
- 11:58 PM Revision 8b1cedf8 (taxeditor): update TaxEditor dependencies for #3332 (not yet dependencies of dependencies)
- 10:46 PM Revision 4983d588 (cdmlib): update dependencies for httpclient, ezmorph, poi, wsdl4j (1.6.2), jaxen (1.1.4), xpp3 (1.1.4c) #3332
- 06:52 PM Revision fb170c3c (cdmlib): updated wsdl4j (1.6.2), jaxen (1.1.4), xpp3 (1.1.4c)
- 06:32 PM Revision 1f8e88d0 (cdmlib): update dependencies for opencsv, easymock, jtds, httpclient, ezmorph and poi #3332
- 06:20 PM Revision 35977f36 (cdmlib): adapt DwcaZipToStreamConverter to opencsvReadr 2.3
- 06:02 PM Revision 16ac1510 (cdmlib): revert log4j version to 1.2.15 as in creates problems with javax.mail dependency in cdmlib-io
- 05:48 PM Revision 2ac4a851 (cdmlib): remove dependency from javax.mail exceptions
- 05:15 PM Revision f0e4186c (cdmlib): update dependencies for opencsv, log4j, easymock and jdts
- 05:14 PM Revision ff096362 (cdmlib): fix unicode in MobotOpenUrlServiceWrapperTest
- 03:27 PM Revision 05ae7e1b (cdmlib): Create branch for hibernate 4 migration
- 03:12 PM Revision 8387687a (cdmlib-apps): some more unicodes in eflora
- 03:08 PM Revision 505a61dd (cdmlib-apps): change modul name in eflora
- 03:05 PM Revision 19ee65c5 (cdmlib-apps): some more unicodes in eflora
- 02:51 PM Revision 1f046e97 (cdmlib-apps): ferns import with unicode e acute
- 02:39 PM Revision ed155238 (cdmlib-apps): changed unitils dependency in eflora
- 02:31 PM Revision 9c03a941 (cdmlib-apps): latest imports for AlgaTerra (DNAFacts)
- 02:30 PM Revision 5f66b5eb (cdmlib-apps): update parent pom version number for eFlora
- 02:28 PM Revision dfc74e02 (cdmlib-apps): update parent pom version number for PESI (not sure if correct)
- 02:01 PM Revision 4eb88cab (cdmlib-apps): update parent pom version number for PESI (not sure if correct)
- 01:46 PM Revision e81b8e81 (cdmlib-apps): adapt PESI export to new signature of loadRankSpecificRootNode
03/01/2013
- 05:54 PM Revision acf481aa (cdmlib): re-enabling TransmissionEngineOccurrenceTest
- 05:42 PM Revision f53f71bf (cdmlib): solving application context problem
- 05:42 PM Revision cd070339 (cdmlib): solving wired resource not found problem
- 05:42 PM Revision 91c035ee (cdmlib): ignoring test to prevent from running in eclipse
- 05:42 PM Revision e405a58d (cdmlib): increasing heap for tests to avoid garbage collection execesses
02/28/2013
- 06:25 PM Revision 28cf9db3 (cdmlib): TransmissionEngineOccurrence done also with test + some improvements regarding test data generation
- 06:25 PM Revision f71ee1b8 (cdmlib): documentation
- 06:25 PM Revision b346a12d (cdmlib): deleting temp file
- 06:25 PM Revision 7eac67ed (cdmlib): fixing absence terms in datasets
- 06:25 PM Revision 0a71e914 (cdmlib): first implementation of TransmissionEngineOccurrence and basic test
- 06:25 PM Revision 9f52d1e1 (cdmlib): CdmApplicationDefaultConfiguration bean explicite in app context config
- 06:25 PM Revision 777fd02e (cdmlib): documentation
- 06:25 PM Revision 1ae9f0ff (cdmlib): calls to loadRankSpecificRootNodes() in tests and other classes adapted
- 06:25 PM Revision 05da02fa (cdmlib): loadRankSpecificRootNodes() documentation
- 06:25 PM Revision 9245c69a (cdmlib): loadRankSpecificRootNodes() extended, according test enabled and extended
- 06:25 PM Revision 3988f79e (cdmlib): typo
- 02:18 PM Revision 839470cd (cdmlib): Factory method for Derivation Event
- 11:52 AM Revision 673e3168 (cdmlib): factory method for IndividualAssociation
- 11:43 AM Revision 9d8f5814 (cdmlib): add getTaxon in BerlinModelImportBase
- 11:25 AM Revision 84539d07 (cdmlib): minor
- 10:49 AM Revision 0807b51a (cdm-dataportal): taking screenshot of illicium during test run
02/27/2013
- 07:02 PM Revision 51b4fe08 (cdmlib-apps): uncommit ignore for AT picture import
- 11:30 AM Revision 1dda33c7 (cdmlib): Cascade saveUpdate from Sequence to GenBankAccession
- 11:23 AM Revision bec2153a (cdmlib): Cascade saveUpdate from DNASample to Sequence
02/26/2013
- 07:07 PM Revision 18559a66 (cdmlib): factory method for molecular.GenBankAccession
- 06:44 PM Revision d6ad43ba (cdmlib-apps): latest AlgaTerra import updates
- 06:28 PM Revision b0b3a4ab (cdmlib): factory method for molecular.Locus (update Test)
- 05:59 PM Revision fa28b537 (cdmlib): #3324:
- - re-formatted code
- extracted strings to global constants
- cleaned up comments - 05:04 PM Revision 7cf104d0 (cdmlib): factory method for molecular.Locus
- 04:56 PM Revision be034f37 (cdmlib): Factory method for molecular.Sequence
- 04:13 PM Revision c45b9ceb (cdmlib): #3279:
- - fixed test by using BlankDataSet.xml to use a clean data base for the test (accidentally removed before)
- 09:39 AM Revision 8e862269 (cdmlib): #3279:
- - initially try to parse the scientific name before checking the atomised data
- changed expected value to 11 since ...
02/25/2013
- 12:38 PM Revision 41fcd4f0 (cdmlib): added classification to initialization startegy
- 10:42 AM Revision 5861ede5 (cdmlib): added accepted name search web service endpoint
- 10:41 AM Revision 901528f6 (cdmlib): new dto for accepted namesearch endpoint in the name catalogue controller
- 08:20 AM Revision 46ca8bd6 (cdm-dataportal): default picture for missing images
- 08:20 AM Revision d5f0e39e (cdm-dataportal): fixing image url paths
- 08:17 AM Revision 47521317 (cdmlib): fixing lazy loading exception
- 08:17 AM Revision b437488a (cdmlib): configuring the .cdmLibrary folder in a central place, see #2387
- 08:16 AM Revision 5f0a7752 (cdmlib): removing property from launcher
- 08:16 AM Revision fd907881 (cdmlib): web application properties for cdmlib-remote can now be defined in a per user properties file: ~/.cdmLibrary/cdmlib-remote.properties
02/22/2013
- 04:51 PM Revision f5e87cb1 (cdmlib): Refactored processing for Term Representation label into a separate class.
- 04:14 PM Revision fc13aa30 (cdm-dataportal): fixing last bug related to #2890 (Classification switch not working when not signed-in before)
- 01:51 PM Revision c9ffb64e (cdm-dataportal): upgrading to selenium 2.30.0
- 01:35 PM Revision 61b6ee11 (cdm-dataportal): searching on all classifications now possible and fixing some bugs related to #2896
- 01:35 PM Revision 4050a8a2 (cdm-dataportal): different link color for synonyms
- 01:11 PM Revision 15cf560f (cdmlib): creating branch for remote ui gwt
- 12:52 PM Revision c3796517 (cdmlib): service method to list Classifications for taxonBase
- 10:27 AM Revision 1226b494 (cdmlib): moved this controller to .. remote.controller.dto package
02/21/2013
- 05:18 PM Revision 162aa018 (cdmlib): Added new package for Controllers that return DTO's
- 01:41 PM Revision 571606d1 (cdmlib): Made Xpath for selecting features from descriptions more specific so that only the feature associated with a particular Taxon is selected. Fix IndexOutOfBounds exception for parsing date string.
02/20/2013
- 05:31 PM Revision 95d76db6 (cdmlib): more queries for the references...
- 03:49 PM Revision dbf4b8a8 (cdm-dataportal): fixing #2896 (Classification switch should affect search results)
- 03:49 PM Revision 308b5f90 (cdm-dataportal): moving function to other file
02/19/2013
- 06:35 PM Revision aa366c44 (cdm-dataportal): - added description for drupal caching mechanism
- - fixed typos
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