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From 12/31/2009 to 01/29/2010

01/29/2010

03:32 PM Revision b269a30e (cdmlib): added service to get all taxon nodes
Katja Luther
03:30 PM Revision 03081c9e (cdmlib): fix the jaxb import/export
Katja Luther
03:28 PM Revision 6e56392b (cdmlib): while unmarshalling the xml escaping has to be reversed
Katja Luther
03:15 PM Revision 2d693d7a (cdmlib): Added setter/getter for TaxonNamePropertyPath
Eun-Mok Lee
03:14 PM Revision 80f2190f (cdmlib): Added setter/getter for TaxonNamePropertyPath
Eun-Mok Lee
03:14 PM Revision 5e15bfbb (cdmlib): Handle errors in Excel file
Niels Hoffmann
03:13 PM Revision e6555980 (cdmlib): Using newly added TaxonNamePropertyPath
Eun-Mok Lee
03:11 PM Revision d34b446b (cdmlib): Handle errors in Excel file
Niels Hoffmann
03:02 PM Revision 94be4dbc (cdmlib): Handle errors in Excel file
Niels Hoffmann
02:48 PM Revision 7a069b4a (cdmlib): an & in the xml lead to errors during parsing
Niels Hoffmann
02:45 PM Revision 5bbb7fb7 (cdmlib): an & in the xml lead to errors during parsing
Niels Hoffmann
02:34 PM Revision a09b1c36 (cdmlib): XmlHelp munched exceptions. That is not very helpful.
Niels Hoffmann
02:15 PM Revision 7e9a8e82 (taxeditor): Added workedChecked().
Eun-Mok Lee
01:49 PM Revision 4c71dfaf (cdmlib): windows installation files
Francisco Revilla
11:13 AM Revision af0a1957 (cdmlib): new folder structure for installers
Francisco Revilla
11:12 AM Revision e889789a (cdmlib): new folder structure for installers
Francisco Revilla

01/28/2010

04:38 PM Revision b7e9c1f8 (cdmlib)
Katja Luther
03:38 PM Revision a2720e95 (cdmlib): minor
Niels Hoffmann
03:37 PM Revision 5d1cfa2b (taxeditor): fixes 1160 finally
Niels Hoffmann
03:21 PM Revision 07698444 (taxeditor): Import and Export now have a progress monitor.
Niels Hoffmann
03:20 PM Revision 06260b86 (taxeditor): matching is now configurable in the editor
Niels Hoffmann
03:20 PM Revision bccd16ea (taxeditor): matching is now configurable in the editor
Niels Hoffmann
03:19 PM Revision 3bab40a1 (taxeditor): matching is now configurable in the editor
Niels Hoffmann
03:19 PM Revision e6678492 (cdmlib): matching is now configurable in the editor
Niels Hoffmann
02:37 PM bug #1119: [PARSER] Duplicate inreferences created during parsing are NOT merged when data gets saved
Replying to [[comment5|n.hoffmann]]:
> InReferences are troubling.
> This is what I found out so far:
>
...
Andreas Müller
02:34 PM Revision b178d559 (cdmlib): minor
Andreas Müller

01/27/2010

05:04 PM Revision 895544ce (taxeditor): A progress view for #823 added.
Eun-Mok Lee
05:04 PM Revision ac4d6c58 (taxeditor): Needed for #823. It's more a guess than a certainty.
Eun-Mok Lee
04:45 PM Revision 9db0053a (cdmlib)
Katja Luther
04:22 PM Revision 5c923a67 (taxeditor): Change ImagesHelper to ImagesUtility redone.
Eun-Mok Lee
04:16 PM Revision 621a85d0 (taxeditor): #823 fixed.
Eun-Mok Lee
04:09 PM Revision 32c77136 (taxeditor): #823 fixed.
Eun-Mok Lee
04:09 PM Revision ac7a16fa (taxeditor): #823 fixed.
Eun-Mok Lee
04:08 PM Revision d846b86e (taxeditor): #823 fixed.
Eun-Mok Lee
04:08 PM Revision 84664412 (taxeditor): #823 fixed.
Eun-Mok Lee
04:07 PM Revision 7cb60eef (taxeditor): #823 fixed.
Eun-Mok Lee
04:02 PM Revision 1927d0da (cdmlib): moved image functionality into the library
Niels Hoffmann
03:52 PM Revision 75797dde (taxeditor): #823 fixed.
Eun-Mok Lee
03:51 PM Revision 0fd24773 (taxeditor): #823 fixed.
Eun-Mok Lee
03:50 PM Revision 28e06b85 (taxeditor): #823 fixed.
Eun-Mok Lee
03:49 PM Revision 6e491454 (taxeditor): #823 fixed.
Eun-Mok Lee
03:48 PM Revision 8fd79958 (taxeditor): #823 fixed.
Eun-Mok Lee
03:47 PM Revision dc26b111 (taxeditor): #823 fixed.
Eun-Mok Lee
03:46 PM Revision b8c0c784 (taxeditor): #823 fixed.
Eun-Mok Lee
03:45 PM Revision 65d953a8 (taxeditor): #823 fixed.
Eun-Mok Lee
03:44 PM Revision 22456867 (taxeditor): #823 fixed.
Eun-Mok Lee
03:42 PM Revision 10358437 (taxeditor): #823 fixed.
Eun-Mok Lee
03:42 PM Revision 9de52642 (taxeditor): #823 fixed.
Eun-Mok Lee
03:41 PM Revision df1c3add (taxeditor): #823 fixed.
Eun-Mok Lee
03:40 PM Revision 89223972 (taxeditor): #823 fixed.
Eun-Mok Lee
03:39 PM Revision 91f25442 (taxeditor): #823 fixed.
Eun-Mok Lee
03:38 PM Revision 0da03878 (taxeditor): #823 fixed.
Eun-Mok Lee
03:37 PM Revision 8ecf3bdf (taxeditor): #823 fixed.
Eun-Mok Lee
03:37 PM Revision 10ffbb17 (taxeditor): #823 fixed.
Eun-Mok Lee
03:34 PM Revision 48d8c5cf (taxeditor): #823 fixed.
Eun-Mok Lee
03:33 PM Revision 91a05f91 (taxeditor): #823 fixed.
Eun-Mok Lee
03:32 PM Revision e110c367 (taxeditor): #823 fixed.
Eun-Mok Lee
03:31 PM Revision b3d4151d (taxeditor): #823 fixed.
Eun-Mok Lee
03:30 PM Revision df442cc8 (taxeditor): #823 fixed.
Eun-Mok Lee
03:29 PM Revision c8c44a51 (taxeditor): #823 fixed.
Eun-Mok Lee
03:28 PM Revision 9b325fb8 (taxeditor): #823 fixed.
Eun-Mok Lee
03:27 PM Revision 0a8c8547 (taxeditor): #823 fixed.
Eun-Mok Lee
03:26 PM Revision f588da60 (taxeditor): #823 fixed.
Eun-Mok Lee
03:24 PM Revision 2854b0bf (taxeditor): #823 fixed.
Eun-Mok Lee
03:20 PM Revision b08c1798 (taxeditor): #823 fixed.
Eun-Mok Lee
02:14 PM Revision a345da86 (taxeditor): moved image functionality into the library
Niels Hoffmann
02:14 PM Revision c67e904d (cdmlib): moved image functionality into the library
Niels Hoffmann
01:53 PM Revision fe4370a9 (taxeditor): typo in @param description
Eun-Mok Lee
10:56 AM Revision 3aa58b57 (taxeditor): Did some code cleanup. Removed obsolete and deprecated classes.
Niels Hoffmann
10:38 AM Revision fd7acead (cdmlib)
Katja Luther
09:49 AM Revision 93a4d3f0 (taxeditor): #823
Eun-Mok Lee
09:49 AM Revision cde3a606 (taxeditor): #823
Eun-Mok Lee

01/26/2010

06:48 PM Revision b7bff57a (taxeditor): fixes #1407
Niels Hoffmann
06:48 PM Revision 0928a643 (cdmlib): fixes #1407
Niels Hoffmann
06:39 PM Revision 47734249 (cdmlib)
Niels Hoffmann
06:23 PM bug #1119: [PARSER] Duplicate inreferences created during parsing are NOT merged when data gets saved
I am refiling this as a bug, because inReferences are producing duplicate references as well as duplicate authors.
Niels Hoffmann

01/25/2010

03:09 PM Revision 54873d2a (cdmlib): Latest TaxonX files for palms import added
Niels Hoffmann
03:04 PM bug #1119: [PARSER] Duplicate inreferences created during parsing are NOT merged when data gets saved
InReferences are troubling.
This is what I found out so far:
* The inReference itself does not get persisted corre...
Niels Hoffmann
02:33 PM Revision 036e34a0 (taxeditor): #823
Eun-Mok Lee
02:33 PM Revision 53875b15 (taxeditor): #823
Eun-Mok Lee
02:22 PM Revision f4ca3a9a (taxeditor): #823
Eun-Mok Lee
02:22 PM Revision 0ce99add (taxeditor): #823
Eun-Mok Lee

01/22/2010

05:24 PM Revision b498076a (cdmlib): Added WorkingSetDao & Service
Ben Clark
05:24 PM Revision e4b1c0be (cdmlib): Added WorkingSetDao & Service
Ben Clark
05:23 PM Revision a1587c24 (cdmlib): Changes to NonViralName.getTitleCache()
Ben Clark
03:34 PM Revision 34c45390 (cdmlib): getMatchMode() in DefaultMatchStrategy is now failsafe
Niels Hoffmann
11:10 AM Revision 61e364bb (taxeditor): Removed "Citation*" and "Microcitation" from labels. Removed librarycentric helper methods and adapted calls to use explicit methods in the library.
Niels Hoffmann

01/21/2010

08:30 PM Revision f480d4cb (cdmlib): moved functionality from editor to library
Niels Hoffmann
02:19 PM Revision ca4feec7 (taxeditor): Fixes #1412
Niels Hoffmann
01:56 PM Revision 74dac252 (taxeditor): #1287 fixed.
Eun-Mok Lee
11:55 AM Revision 3f945f28 (cdm-dataportal): demo: last minute fixes 2
Andreas Kohlbecker
11:47 AM Revision 4e3b65e6 (cdm-dataportal): demo: last minute fixes 1
Andreas Kohlbecker
11:34 AM Revision 17d259ea (taxeditor)
Niels Hoffmann
11:34 AM Revision a79ad37f (cdmlib)
Niels Hoffmann
11:18 AM Revision 6aa3d031 (taxeditor): minor
Niels Hoffmann
11:18 AM Revision 915bda6c (taxeditor)
Niels Hoffmann

01/20/2010

03:54 PM Revision 0b4d8b97 (taxeditor): #1415 fixed.
Eun-Mok Lee
01:56 PM Revision b73ea6e7 (cdmlib): shorter timeout for metadata service
Andreas Kohlbecker
01:54 PM Revision 99408892 (cdm-dataportal): hack for demo in Leiden
Andreas Kohlbecker
01:54 PM Revision 018df56c (cdm-dataportal): fixes and hacks for demo in Leiden
Andreas Kohlbecker

01/19/2010

09:29 PM Revision eba70e8f (cdmlib): mini fix
Andreas Kohlbecker
07:27 PM Revision cdeb3eaf (cdm-dataportal): fixing missing array when gallery captions are off
Andreas Kohlbecker
06:08 PM Revision 081bca15 (cdm-dataportal): default feature tree
Andreas Kohlbecker
05:44 PM Revision 004cbd7f (cdmlib): allowing to write
Andreas Kohlbecker
04:18 PM Revision 2a1f690c (cdmlib): FeatureTreeService now returns a default FeatureTree when no tree is in database. Testing it with portal now.
Niels Hoffmann
02:38 PM task #1404: References cache strategy should always render bibliographic references
Replying to [[comment4|n.hoffmann]]:
> Replying to [[comment3|a.mueller]]:
>
> > Shouldn't we use the title cache...
Andreas Müller
10:22 AM task #1404: References cache strategy should always render bibliographic references
Replying to [[comment3|a.mueller]]:
> Shouldn't we use the title cache for your purposes by using another cacheStra...
Niels Hoffmann
11:55 AM Revision 972696a2 (cdm-dataportal): updating module infos & improved uninstall update for cdm_api
Andreas Kohlbecker
11:34 AM Revision 42233c7c (cdm-dataportal)
Katja Luther
10:33 AM Revision 30f3257c (taxeditor): cleaned up plugin dependencies
Niels Hoffmann
10:32 AM Revision 3da235d1 (taxeditor): Initial import.
Niels Hoffmann

01/18/2010

10:13 PM task #1404: References cache strategy should always render bibliographic references
Another cache field makes the model more complicated and we try to keep the model as simple as possible. It also blow... Andreas Müller
01:30 PM task #1404: References cache strategy should always render bibliographic references
Just an explanation: FilteredSelectionDialogs is an eclipse technique. We feed it with all strings that need filterin... Niels Hoffmann
05:54 PM discussion #1410 (Closed): DISCUSS - CDM product names
we need to define and fix the names for the cdm products, currently there is a big variety in inconsistency in the na... Andreas Kohlbecker
01:44 PM Revision 33754acb (taxeditor): minor
Niels Hoffmann
11:02 AM Revision 275a9964 (cdm-dataportal)
Andreas Kohlbecker
11:00 AM Revision de8baedd (cdm-dataportal): new screenshot.png
Andreas Kohlbecker
10:58 AM Revision f70ef42a (cdm-dataportal): new theme info
Andreas Kohlbecker
10:55 AM Revision c3d47478 (cdm-dataportal): fixing IE7 (IE8 compatibility mode)
Andreas Kohlbecker

01/17/2010

08:39 PM Revision d20e3517 (cdmlib): Added constraints to Taxon.synonymRelations, Synonym.synonymRelations, and SynonymRelationship.relatedFrom & SynonymRelationship.relatedTo to mark orphaned synonyms as invalid. [https://dev.e-taxonomy.eu/trac/ticket/1347]
Also, added constraint such that two accepted names or an accepted name and a synonym with the same sec reference and... Ben Clark
08:38 PM Revision c6f9cb19 (cdmlib): Added constraints to Taxon.synonymRelations, Synonym.synonymRelations, and SynonymRelationship.relatedFrom & SynonymRelationship.relatedTo to mark orphaned synonyms as invalid. [https://dev.e-taxonomy.eu/trac/ticket/1347]
Also, added constraint such that two accepted names or an accepted name and a synonym with the same sec reference and... Ben Clark

01/16/2010

12:12 AM task #1404: References cache strategy should always render bibliographic references
Yes this is a problem. I have no concrete idea how to solve it but here is just what came into my mind when I thought... Andreas Müller

01/15/2010

05:44 PM task #1404 (Rejected): References cache strategy should always render bibliographic references
This is a longer story.
The first implementation of the `ReferenceFilteredSelection` and the underlying `getUuid...
Niels Hoffmann
05:19 PM Revision a235b25e (cdmlib): Trace
Maxime Venin
05:14 PM Revision e22d0515 (cdmlib): Trace v2
Andreas Kohlbecker
05:10 PM Revision 535ddd15 (cdmlib): Trace
Andreas Kohlbecker
05:07 PM Revision 9aebc9fd (cdmlib): test commit
Andreas Kohlbecker
01:24 PM Revision 37c336c3 (cdmlib)
Katja Luther
01:23 PM Revision 592b466a (cdmlib)
Katja Luther
01:22 PM Revision 0ef5b976 (cdmlib): in xml file taxonnode is referenced by id
#1277 jaxb import Katja Luther
01:21 PM Revision a0b80723 (cdmlib): #1277 jaxb import, set id to @XmlTransient
Katja Luther
01:20 PM Revision 087d567e (cdmlib): #1277 jaxb import
Katja Luther
12:11 PM Revision d09b674b (cdmlib): Added isDatabaseSchemaCompatible().
Eun-Mok Lee
12:10 PM Revision 156ad497 (cdmlib): Added isDatabaseSchemaCompatible().
Eun-Mok Lee
12:10 PM Revision d81fe01c (taxeditor): Datasource chooser is shown in case of a version mismatch (model vs. database). Related to #1287
Eun-Mok Lee
12:09 PM Revision 14020867 (taxeditor): Message text can be added individually.
Eun-Mok Lee
11:00 AM Revision 5fa829e4 (cdm-dataportal): initial commit of theme for cdm bundle website
Andreas Kohlbecker

01/14/2010

12:01 PM Revision 8da611f4 (taxeditor): fixes #1401
Niels Hoffmann
11:43 AM Revision 870575ab (taxeditor): fixes #1402
Niels Hoffmann

01/13/2010

05:52 PM Revision 86bf1564 (cdmlib): Corrected bug in AuditEventDao
Ben Clark
01:37 PM Revision 443c2e2c (taxeditor): removed old projects
Niels Hoffmann
01:30 PM Revision f9dc4154 (taxeditor): p2izing the editor
Niels Hoffmann
01:01 PM Revision 70beb32c (cdmlib): management service (/manager/datasources/*) ( and management page (/index.jsp)
Andreas Kohlbecker
12:59 PM Revision d1091397 (cdmlib): improving datasource management
Andreas Kohlbecker
12:37 PM Revision 7005ad75 (taxeditor): fixes #1395
Niels Hoffmann
11:46 AM Revision e25f65ef (cdmlib)
Katja Luther
11:46 AM Revision 1d8f2bcb (cdmlib)
Katja Luther
11:46 AM Revision b38b226c (cdmlib)
Katja Luther
11:38 AM Revision a94651fc (cdmlib): new test for the delete method of TaxonNameDao
Katja Luther
11:38 AM Revision 5a8ed82c (taxeditor)
Niels Hoffmann
11:31 AM Revision ea285316 (cdmlib): implement the delete method, to delete the refering taxonbases #1390
Katja Luther
11:21 AM Revision 4c5f91bd (taxeditor): switching to buckminster
Niels Hoffmann
11:13 AM Revision 58711a90 (taxeditor): Initial import.
Niels Hoffmann

01/12/2010

04:54 PM Revision b9aac961 (cdmlib): Added protected setter methods to Synonym.synonymRelations and Taxon.relationsToThisTaxon to allow bean initialization
Ben Clark
02:46 PM Revision 0270c7b6 (taxeditor): #1279
Eun-Mok Lee
02:45 PM Revision 26848502 (cdmlib): #1279
Eun-Mok Lee
02:45 PM Revision 5185fb4b (cdmlib): #1279
Eun-Mok Lee
10:56 AM Revision cb5fe12a (taxeditor): #1395
Eun-Mok Lee
10:55 AM Revision 5f20b407 (taxeditor): #1395
Eun-Mok Lee
09:59 AM Revision e80c3df1 (cdmlib): minor change
Andreas Kohlbecker

01/11/2010

05:17 PM Revision 459a2ed4 (cdmlib): fixed bug in listDescriptions
Ben Clark
05:08 PM Revision 9dc8a26e (cdmlib): Updated cascade sematics for determinations
Ben Clark
04:19 PM Revision 35a22941 (taxeditor): #1154 done.
Eun-Mok Lee
03:28 PM Revision 05c85966 (cdmlib): #1390
Katja Luther
03:15 PM Revision f35f6e4e (cdmlib): #1390
Katja Luther
03:14 PM Revision 6c3d4dd9 (cdmlib): #1390
Katja Luther
01:21 PM Revision 8ff851c6 (cdm-dataportal): Framework to tread and use cdm entities as real Drupal nodes. Example implementation for taxon.
Andreas Kohlbecker
12:34 PM Revision 25762ffa (taxeditor): #1397 done.
Eun-Mok Lee
12:34 PM Revision d399947b (taxeditor): #1397 done.
Eun-Mok Lee
10:54 AM Revision dd64d16a (taxeditor): #1395 done.
Eun-Mok Lee
10:54 AM Revision 303d8fc7 (taxeditor): fixes #1111
Niels Hoffmann

01/08/2010

05:45 PM Revision f39d2e1f (cdmlib): Preparatory work for ticket #1347.
Eun-Mok Lee
05:45 PM Revision dfe7c023 (cdmlib): Preparatory work for ticket #1347.
Eun-Mok Lee
05:44 PM Revision e25724b6 (cdmlib): Preparatory work for ticket #1347.
Eun-Mok Lee
05:41 PM Revision 78140a75 (taxeditor): fixes #1365 and #1366
Niels Hoffmann
05:41 PM Revision 79ff3269 (cdmlib): fixes #1365 and #1366
Niels Hoffmann
05:41 PM Revision c9277829 (taxeditor): Preparatory work for ticket #1347.
Eun-Mok Lee
05:41 PM Revision 1504f742 (taxeditor): Preparatory work for ticket #1347.
Eun-Mok Lee
01:40 PM Revision ef7dae5d (cdmlib): Allowed replace(T x, T y) to accept null for the second argument and globally replace x with null or remove x from collections
Ben Clark

01/07/2010

11:02 PM Revision 636161e7 (cdmlib): Altered ReferringObjectMetadataFactoryImpl to exclude bidirectional relationships where the replaced entity is the "owner" of the related entity (i.e. the relationship is mapped by @OneToMany & mappedBy != null) since those kind of relationships don't make sense in the context of a global replace method.
Ben Clark
02:01 PM Revision b86fa7f3 (taxeditor): Ticket #1352 fixed.
Eun-Mok Lee
02:01 PM Revision e0200b04 (taxeditor): Ticket #1352 fixed.
Eun-Mok Lee
01:27 PM Revision 42657b35 (taxeditor): Ticket #1352 fixed.
Eun-Mok Lee
01:27 PM Revision 0e8bc905 (taxeditor): Ticket #1352 fixed.
Eun-Mok Lee
11:52 AM Revision 5c4a9678 (cdmlib): Implemented a new method to return taxon relationships that are between two taxa.
Niels Hoffmann
11:42 AM Revision cad577d7 (taxeditor): fixes #1357
Niels Hoffmann
11:42 AM Revision 636d99d1 (cdmlib): fixes #1357
Niels Hoffmann
11:26 AM Revision 3326906c (taxeditor): .
Eun-Mok Lee
11:18 AM Revision 28e8057e (cdm-dataportal): tickets #844 and 1338 are solved
Francisco Revilla
12:10 AM Revision ef8997ad (cdmlib): Updated ICdmEntityDao replace(T x, T y) and refresh(T t, LockMode lockMode, List<String> propertyPaths) and added methods to IAnnotationDao
Ben Clark
12:09 AM Revision d0054879 (cdmlib): Updated ICdmEntityDao replace(T x, T y) and refresh(T t, LockMode lockMode, List<String> propertyPaths) and added methods to IAnnotationDao
Ben Clark

01/06/2010

02:41 PM Revision 2b9fc923 (taxeditor): Deleted test code.
Eun-Mok Lee
12:12 PM Revision cf9446f9 (taxeditor): Refactoring
Eun-Mok Lee
12:11 PM Revision ce3e2301 (taxeditor): Ticket #1363 fixed.
Eun-Mok Lee
11:07 AM Revision 546ce13c (taxeditor): Refactoring and ticket #1363 fixed.
Eun-Mok Lee
11:06 AM Revision 5b2c88db (taxeditor): test
Niels Hoffmann

01/05/2010

07:45 PM Revision 365130fc (taxeditor): partly reverted the changes for #1365
Niels Hoffmann
06:12 PM Revision 48c767e3 (taxeditor): fixes #1365
Niels Hoffmann
06:11 PM Revision f0d37193 (taxeditor): removed a very obsolete log message
Niels Hoffmann
04:23 PM Revision 0c79fd93 (cdmlib): On behalf of Niels: Check for multiple parents changed in addParentChild()
Eun-Mok Lee
03:52 PM Revision c08d7a59 (cdmlib): fixes #1343
Niels Hoffmann
03:51 PM Revision b455bf12 (taxeditor): fixes #1343
Niels Hoffmann

01/04/2010

01:35 PM Revision e95898a0 (cdmlib): fixes #1022
Niels Hoffmann
01:23 PM Revision 57d92b59 (cdmlib): fixes an issue with bulk adding of taxon nodes to a taxonomic tree
Niels Hoffmann
10:30 AM feature request #1362 (Rejected): Version number should be located at one place
Due to unknown reasons {featureVersion} isn't parsed correctly in the about text, so the version number is hard coded... Eun-Mok Lee
10:21 AM Revision 78a22d46 (taxeditor): About text was added (ticket #1127). Due to unknown reasons {featureVersion} isn't parsed correctly, so the version number is hard coded for the present.
Eun-Mok Lee
 

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