feature request #3685
Updated by Andreas Müller almost 7 years ago
this ticket holds all remaining tasks for #3360 Open fields from Excel tabel: * Separate class for tissue samples needed? (separate recordBasis already exists) see also #4233 * (DNA) Extraction Number, maybe handled by any of the existing DerivedUnit identifiers? * Preservation (probably handled by MaterialsAndMethods) * Medium, temperature, date, * repeatable (first condition, later second condition ,...) * Preparation (probably handled by MaterialsAndMethods) * Materials&Methods, prepared by, date - #4442 * Sample Type (Tissue, DNA, RNA) !! - do we need an extra recordBasis for RNA? * DNA Quality #4434 * DNA Purification Method: Datatype * Use Material&Method also for DerivationEvent (#3717) * How to implement link to Material&Method citation * Primer: how to implement link of reference * DNASample do have the important field SampleProvidedBy. This could maybe be modeled as a DerivationEvent.actor of an Accessioning Event, but probably this is not clear enough. Needs to be discussed. Do we need this field for other types of Specimen too? -> do we need to store this in CDM at all (we are not a collection management system!)? * sequence references may also include not only the publication but also additional files which hold the data itself. We need to handle this somehow * DnaSamples may include multiple taxa, only the Consensus Sequence may belong to a single taxon (e.g. algae samples), do we need determination also for Sequence? * see also #3713 for the CollectionUnit <-> Specimen discussion * marker hierarchies: currently combined markers are handled as parents of each single marker, this may not work if we have 2 overlapping combined markers, therefore we need a more general handling of marker terms here (a single parent for each marker is not enough) * MaterialSample type #4137 GGBN data standard: see http://goo.gl/WgsAqs