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bug #9934

closed

IOOB Exception after creating new taxon

Added by Katja Luther over 1 year ago. Updated over 1 year ago.

Status:
Closed
Priority:
New
Assignee:
Category:
taxeditor
Target version:
Start date:
Due date:
% Done:

100%

Estimated time:
Severity:
normal
Found in Version:

Description

mail AM:

last remote method : http://localhost:65391/remoting/taxonnode.service
last remote request client time : 2022-02-09T20:01:32.655
last remote request response header time : Wed, 09 Feb 2022 19:01:32 GMT
client error time : 2022-02-09T20:01:32.729
login : admin
editor version : 5.29.0.202201270053
server : localhost (localhost mgd.) / cdm_local_test
schema version : 5.27.1.0.20210922
os : Windows Server 2012 R2 6.3 amd64
java : 1.8.0_131
org.eclipse.swt.SWTException: Failed to execute runnable (org.eclipse.e4.core.di.InjectionException: java.lang.IndexOutOfBoundsException: Index: 0, Size: 0)
            at org.eclipse.swt.SWT.error(SWT.java:4533)
            at org.eclipse.swt.SWT.error(SWT.java:4448)
            at org.eclipse.swt.widgets.Synchronizer.runAsyncMessages(Synchronizer.java:185)
            at org.eclipse.swt.widgets.Display.runAsyncMessages(Display.java:4211)
            at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:3827)
            at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine$4.run(PartRenderingEngine.java:1121)
            at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:336)
            at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine.run(PartRenderingEngine.java:1022)
            at org.eclipse.e4.ui.internal.workbench.E4Workbench.createAndRunUI(E4Workbench.java:150)
            at org.eclipse.ui.internal.Workbench$5.run(Workbench.java:693)
            at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:336)
            at org.eclipse.ui.internal.Workbench.createAndRunWorkbench(Workbench.java:610)
            at org.eclipse.ui.PlatformUI.createAndRunWorkbench(PlatformUI.java:148)
            at eu.etaxonomy.taxeditor.Application.start(Application.java:20)
            at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196)
            at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:134)
            at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104)
            at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:388)
            at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:243)
            at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
            at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
            at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
            at java.lang.reflect.Method.invoke(Method.java:498)
            at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:673)
            at org.eclipse.equinox.launcher.Main.basicRun(Main.java:610)
            at org.eclipse.equinox.launcher.Main.run(Main.java:1519)
Caused by: org.eclipse.e4.core.di.InjectionException: java.lang.IndexOutOfBoundsException: Index: 0, Size: 0
            at org.eclipse.e4.core.internal.di.MethodRequestor.execute(MethodRequestor.java:65)
            at org.eclipse.e4.ui.internal.di.UIEventObjectSupplier$UIEventHandler$1.run(UIEventObjectSupplier.java:56)
            at org.eclipse.swt.widgets.RunnableLock.run(RunnableLock.java:35)
            at org.eclipse.swt.widgets.Synchronizer.runAsyncMessages(Synchronizer.java:182)
            ... 23 more
Caused by: java.lang.IndexOutOfBoundsException: Index: 0, Size: 0
            at java.util.ArrayList.rangeCheck(ArrayList.java:653)
            at java.util.ArrayList.get(ArrayList.java:429)
            at eu.etaxonomy.cdm.persistence.dao.hibernate.taxon.TaxonNodeDaoHibernateImpl.getTaxonNodeDto(TaxonNodeDaoHibernateImpl.java:1186)
            at eu.etaxonomy.cdm.api.service.TaxonNodeServiceImpl.dto(TaxonNodeServiceImpl.java:283)
            at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
            at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
            at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
            at java.lang.reflect.Method.invoke(Method.java:498)
            at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
            at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
            at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
            at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
            at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:283)
            at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
            at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
            at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
            at com.sun.proxy.$Proxy206.dto(Unknown Source)
            at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
            at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
            at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
            at java.lang.reflect.Method.invoke(Method.java:498)
            at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
            at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
            at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
            at org.springframework.remoting.support.RemoteInvocationTraceInterceptor.invoke(RemoteInvocationTraceInterceptor.java:78)
            at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
            at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
            at com.sun.proxy.$Proxy317.dto(Unknown Source)
            at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
            at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
            at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
            at java.lang.reflect.Method.invoke(Method.java:498)
            at org.springframework.remoting.support.RemoteInvocation.invoke(RemoteInvocation.java:212)
            at eu.etaxonomy.cdm.api.remoting.DebuggingRemoteInvocationExecutor.invoke(DebuggingRemoteInvocationExecutor.java:52)
            at org.springframework.remoting.support.RemoteInvocationBasedExporter.invoke(RemoteInvocationBasedExporter.java:78)
            at org.springframework.remoting.support.RemoteInvocationBasedExporter.invokeAndCreateResult(RemoteInvocationBasedExporter.java:114)
            at org.springframework.remoting.httpinvoker.HttpInvokerServiceExporter.handleRequest(HttpInvokerServiceExporter.java:80)
            at org.springframework.web.servlet.mvc.HttpRequestHandlerAdapter.handle(HttpRequestHandlerAdapter.java:51)
            at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:967)
            at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:901)
            at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:970)
            at org.springframework.web.servlet.FrameworkServlet.doPost(FrameworkServlet.java:872)
            at javax.servlet.http.HttpServlet.service(HttpServlet.java:707)
            at org.springframework.web.servlet.FrameworkServlet.service(FrameworkServlet.java:846)
            at javax.servlet.http.HttpServlet.service(HttpServlet.java:790)
            at org.eclipse.jetty.servlet.ServletHolder$NotAsyncServlet.service(ServletHolder.java:1395)
            at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:755)
            at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1617)
            at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:317)
            at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java:127)
            at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.doFilter(FilterSecurityInterceptor.java:91)
            at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
            at org.springframework.security.web.access.ExceptionTranslationFilter.doFilter(ExceptionTranslationFilter.java:114)
            at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
            at org.springframework.security.web.session.SessionManagementFilter.doFilter(SessionManagementFilter.java:137)
            at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
            at org.springframework.security.web.servletapi.SecurityContextHolderAwareRequestFilter.doFilter(SecurityContextHolderAwareRequestFilter.java:170)
            at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
            at org.springframework.security.web.savedrequest.RequestCacheAwareFilter.doFilter(RequestCacheAwareFilter.java:63)
            at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
            at org.springframework.security.web.authentication.www.BasicAuthenticationFilter.doFilterInternal(BasicAuthenticationFilter.java:215)
            at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
            at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
            at org.springframework.security.web.authentication.logout.LogoutFilter.doFilter(LogoutFilter.java:116)
            at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
            at org.springframework.security.web.header.HeaderWriterFilter.doFilterInternal(HeaderWriterFilter.java:66)
            at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
            at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
            at org.springframework.security.web.context.SecurityContextPersistenceFilter.doFilter(SecurityContextPersistenceFilter.java:105)
            at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
            at org.springframework.security.web.context.request.async.WebAsyncManagerIntegrationFilter.doFilterInternal(WebAsyncManagerIntegrationFilter.java:56)
            at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
            at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
            at org.springframework.security.web.FilterChainProxy.doFilterInternal(FilterChainProxy.java:214)
            at org.springframework.security.web.FilterChainProxy.doFilter(FilterChainProxy.java:177)
            at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:347)
            at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:263)
            at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1604)
            at eu.etaxonomy.cdm.servlet.DateHeaderFilter.doFilter(DateHeaderFilter.java:55)
            at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1604)
            at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:197)
            at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
            at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1596)
            at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:545)
            at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)
            at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:590)
            at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:127)
            at org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:235)
            at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:1607)
            at org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:233)
            at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1297)
            at org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:188)
            at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:485)
            at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:1577)
            at org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:186)
            at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1212)
            at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
            at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:127)
            at org.eclipse.jetty.server.Server.handle(Server.java:500)
            at org.eclipse.jetty.server.HttpChannel.lambda$handle$1(HttpChannel.java:383)
            at org.eclipse.jetty.server.HttpChannel.dispatch(HttpChannel.java:547)
            at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:375)
            at org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:270)
            at org.eclipse.jetty.io.AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:311)
            at org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:103)
            at org.eclipse.jetty.io.ChannelEndPoint$2.run(ChannelEndPoint.java:117)
            at org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.runTask(EatWhatYouKill.java:336)
            at org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.doProduce(EatWhatYouKill.java:313)
            at org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.tryProduce(EatWhatYouKill.java:171)
            at org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.run(EatWhatYouKill.java:129)
            at org.eclipse.jetty.util.thread.ReservedThreadExecutor$ReservedThread.run(ReservedThreadExecutor.java:388)
            at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:806)
            at org.eclipse.jetty.util.thread.QueuedThreadPool$Runner.run(QueuedThreadPool.java:938)
            at java.lang.Thread.run(Thread.java:748)
            at org.springframework.remoting.support.RemoteInvocationUtils.fillInClientStackTraceIfPossible(RemoteInvocationUtils.java:45)
            at org.springframework.remoting.support.RemoteInvocationResult.recreate(RemoteInvocationResult.java:149)
            at org.springframework.remoting.support.RemoteInvocationBasedAccessor.recreateRemoteInvocationResult(RemoteInvocationBasedAccessor.java:85)
            at org.springframework.remoting.httpinvoker.HttpInvokerClientInterceptor.invoke(HttpInvokerClientInterceptor.java:158)
            at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
            at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
            at com.sun.proxy.$Proxy352.dto(Unknown Source)
            at eu.etaxonomy.taxeditor.util.TaxonTreeNodeContentProvider.getParent(TaxonTreeNodeContentProvider.java:86)
            at org.eclipse.jface.viewers.AbstractTreeViewer.getParentElement(AbstractTreeViewer.java:1704)
            at org.eclipse.jface.viewers.TreeViewer.getParentElement(TreeViewer.java:558)
            at org.eclipse.jface.viewers.AbstractTreeViewer.internalExpand(AbstractTreeViewer.java:1631)
            at org.eclipse.jface.viewers.AbstractTreeViewer.reveal(AbstractTreeViewer.java:2286)
            at eu.etaxonomy.taxeditor.navigation.navigator.e4.TaxonNavigatorE4.updateView(TaxonNavigatorE4.java:581)
            at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
            at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
            at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
            at java.lang.reflect.Method.invoke(Method.java:498)
            at org.eclipse.e4.core.internal.di.MethodRequestor.execute(MethodRequestor.java:55)
            ... 26 more
Actions #1

Updated by Katja Luther over 1 year ago

  • Description updated (diff)
  • Status changed from New to Resolved
  • Assignee changed from Katja Luther to Andreas Müller
Actions #2

Updated by Katja Luther over 1 year ago

  • % Done changed from 0 to 60
Actions #3

Updated by Andreas Müller over 1 year ago

  • Target version changed from Release 5.40 to Release 5.29
Actions #4

Updated by Andreas Müller over 1 year ago

  • Status changed from Resolved to Closed
  • Assignee changed from Andreas Müller to Katja Luther
  • % Done changed from 60 to 100

Works as expected. Did you check that the fix has no negative side effects?

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