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bug #8857

closed

NonUniqueObjectException when creating new taxon

Added by Katja Luther about 4 years ago. Updated about 3 years ago.

Status:
Closed
Priority:
Highest
Assignee:
Katja Luther
Category:
taxeditor
Target version:
Release 5.15
Start date:
Due date:
% Done:

100%

Estimated time:
Severity:
critical
Found in Version:
Tags:
deduplication

Description

mail WB:

Hallo,
beim Anlegen eines neuen Taxons unter Chamissoa acuminiata aus dem Navigator heraus – der Fehler scheint immer dann aufzutreten, wenn der Name Editor noch offen ist, nicht unbedingt für das Parent-Taxon, hatte schon mal so einen Effekt. Wenn man den Name Editor zu macht, geht’s – NEIN, zu früh gefreut, der Fehler tritt wieder auf.
Versuch: Reconnect. Jetzt kommt einfach nichts mehr, wenn ich aus dem Kontext-Menü New Taxon aufrufe.
Restart. Wieder der Fehler bei der Eingabe. Merkwürdig, das ist neu.
Ich will
Chamissoa acuminiata var. swansonii Sohmer in Bull. Torrey Bot. Club 104: 124. 1977
unter der Art
Chamissoa acuminata Mart.
eingeben.
Versuche es noch mal damit, den Namen als Synonym zu generieren und dann einzufügen.
Als Synonym unter C. acuminata funktioniert, liegt also nicht am Namen selbst.
Dann change to accepted – OK, habe ihn drin, kann weitermachen

Herzlichen Gruß
Walter

last remote method : http://api.cybertaxonomy.org:80/caryophyllales_spp/remoting/taxonnode.service
last remote request client time : 2020-02-23T16:02:35.633
last remote request response header time : Sun, 23 Feb 2020 16:02:37 GMT
client error time : 2020-02-23T16:02:36.059
login : w.berendsohn
editor version : 5.12.0
server : api.cybertaxonomy.org (cybertaxonomy.org) / caryophyllales_spp
schema version : 5.12.0.0.20191202
os : Windows 10 10.0 amd64
java : 1.8.0_241
org.hibernate.NonUniqueObjectException: A different object with the same identifier value was already associated with the session : [eu.etaxonomy.cdm.model.agent.Person#437]
               at org.hibernate.engine.internal.StatefulPersistenceContext.checkUniqueness(StatefulPersistenceContext.java:648)
               at org.hibernate.event.internal.DefaultSaveOrUpdateEventListener.performUpdate(DefaultSaveOrUpdateEventListener.java:284)
               at org.hibernate.event.internal.DefaultSaveOrUpdateEventListener.entityIsDetached(DefaultSaveOrUpdateEventListener.java:227)
               at org.hibernate.event.internal.DefaultSaveOrUpdateEventListener.performSaveOrUpdate(DefaultSaveOrUpdateEventListener.java:92)
               at org.hibernate.event.internal.DefaultSaveOrUpdateEventListener.onSaveOrUpdate(DefaultSaveOrUpdateEventListener.java:73)
               at org.hibernate.internal.SessionImpl.fireSaveOrUpdate(SessionImpl.java:648)
               at org.hibernate.internal.SessionImpl.saveOrUpdate(SessionImpl.java:640)
               at org.hibernate.engine.spi.CascadingActions$5.cascade(CascadingActions.java:218)
               at org.hibernate.engine.internal.Cascade.cascadeToOne(Cascade.java:398)
               at org.hibernate.engine.internal.Cascade.cascadeAssociation(Cascade.java:323)
               at org.hibernate.engine.internal.Cascade.cascadeProperty(Cascade.java:162)
               at org.hibernate.engine.internal.Cascade.cascade(Cascade.java:111)
               at org.hibernate.event.internal.AbstractSaveEventListener.cascadeBeforeSave(AbstractSaveEventListener.java:425)
               at org.hibernate.event.internal.AbstractSaveEventListener.performSaveOrReplicate(AbstractSaveEventListener.java:249)
               at org.hibernate.event.internal.AbstractSaveEventListener.performSave(AbstractSaveEventListener.java:178)
               at org.hibernate.event.internal.AbstractSaveEventListener.saveWithGeneratedId(AbstractSaveEventListener.java:121)
               at org.hibernate.event.internal.DefaultSaveOrUpdateEventListener.saveWithGeneratedOrRequestedId(DefaultSaveOrUpdateEventListener.java:192)
               at org.hibernate.event.internal.DefaultSaveOrUpdateEventListener.entityIsTransient(DefaultSaveOrUpdateEventListener.java:177)
               at org.hibernate.event.internal.DefaultSaveOrUpdateEventListener.performSaveOrUpdate(DefaultSaveOrUpdateEventListener.java:97)
               at org.hibernate.event.internal.DefaultSaveOrUpdateEventListener.onSaveOrUpdate(DefaultSaveOrUpdateEventListener.java:73)
               at org.hibernate.internal.SessionImpl.fireSaveOrUpdate(SessionImpl.java:648)
               at org.hibernate.internal.SessionImpl.saveOrUpdate(SessionImpl.java:640)
               at org.hibernate.engine.spi.CascadingActions$5.cascade(CascadingActions.java:218)
               at org.hibernate.engine.internal.Cascade.cascadeToOne(Cascade.java:398)
               at org.hibernate.engine.internal.Cascade.cascadeAssociation(Cascade.java:323)
               at org.hibernate.engine.internal.Cascade.cascadeProperty(Cascade.java:162)
               at org.hibernate.engine.internal.Cascade.cascade(Cascade.java:111)
               at org.hibernate.event.internal.AbstractSaveEventListener.cascadeBeforeSave(AbstractSaveEventListener.java:425)
               at org.hibernate.event.internal.AbstractSaveEventListener.performSaveOrReplicate(AbstractSaveEventListener.java:249)
               at org.hibernate.event.internal.AbstractSaveEventListener.performSave(AbstractSaveEventListener.java:178)
               at org.hibernate.event.internal.AbstractSaveEventListener.saveWithGeneratedId(AbstractSaveEventListener.java:121)
               at org.hibernate.event.internal.DefaultSaveOrUpdateEventListener.saveWithGeneratedOrRequestedId(DefaultSaveOrUpdateEventListener.java:192)
               at org.hibernate.event.internal.DefaultSaveOrUpdateEventListener.entityIsTransient(DefaultSaveOrUpdateEventListener.java:177)
               at org.hibernate.event.internal.DefaultSaveOrUpdateEventListener.performSaveOrUpdate(DefaultSaveOrUpdateEventListener.java:97)
               at org.hibernate.event.internal.DefaultSaveOrUpdateEventListener.onSaveOrUpdate(DefaultSaveOrUpdateEventListener.java:73)
               at org.hibernate.internal.SessionImpl.fireSaveOrUpdate(SessionImpl.java:648)
               at org.hibernate.internal.SessionImpl.saveOrUpdate(SessionImpl.java:640)
               at org.hibernate.internal.SessionImpl.saveOrUpdate(SessionImpl.java:635)
               at eu.etaxonomy.cdm.persistence.dao.hibernate.common.CdmEntityDaoBase.saveOrUpdate(CdmEntityDaoBase.java:341)
               at eu.etaxonomy.cdm.api.service.ServiceBase.saveOrUpdate(ServiceBase.java:291)
               at eu.etaxonomy.cdm.api.service.ServiceBase.saveOrUpdate(ServiceBase.java:42)
               at sun.reflect.GeneratedMethodAccessor40629.invoke(Unknown Source)
               at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
               at java.lang.reflect.Method.invoke(Method.java:498)
               at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:302)
               at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
               at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
               at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
               at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:281)
               at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
               at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
               at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)
               at com.sun.proxy.$Proxy670.saveOrUpdate(Unknown Source)
               at eu.etaxonomy.cdm.api.service.TaxonNodeServiceImpl.saveNewTaxonNode(TaxonNodeServiceImpl.java:882)
               at sun.reflect.GeneratedMethodAccessor40395.invoke(Unknown Source)
               at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
               at java.lang.reflect.Method.invoke(Method.java:498)
               at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:302)
               at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
               at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
               at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
               at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:281)
               at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
               at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
               at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)
               at com.sun.proxy.$Proxy691.saveNewTaxonNode(Unknown Source)
               at sun.reflect.GeneratedMethodAccessor40395.invoke(Unknown Source)
               at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
               at java.lang.reflect.Method.invoke(Method.java:498)
               at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:302)
               at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
               at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
               at org.springframework.remoting.support.RemoteInvocationTraceInterceptor.invoke(RemoteInvocationTraceInterceptor.java:78)
               at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
               at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)
               at com.sun.proxy.$Proxy1123.saveNewTaxonNode(Unknown Source)
               at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
               at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
               at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
               at java.lang.reflect.Method.invoke(Method.java:498)
               at org.springframework.remoting.support.RemoteInvocation.invoke(RemoteInvocation.java:212)
               at org.springframework.remoting.support.DefaultRemoteInvocationExecutor.invoke(DefaultRemoteInvocationExecutor.java:39)
               at org.springframework.remoting.support.RemoteInvocationBasedExporter.invoke(RemoteInvocationBasedExporter.java:78)
               at org.springframework.remoting.support.RemoteInvocationBasedExporter.invokeAndCreateResult(RemoteInvocationBasedExporter.java:114)
               at org.springframework.remoting.httpinvoker.HttpInvokerServiceExporter.handleRequest(HttpInvokerServiceExporter.java:74)
               at org.springframework.web.servlet.mvc.HttpRequestHandlerAdapter.handle(HttpRequestHandlerAdapter.java:51)
               at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:959)
               at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:893)
               at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:969)
               at org.springframework.web.servlet.FrameworkServlet.doPost(FrameworkServlet.java:871)
               at javax.servlet.http.HttpServlet.service(HttpServlet.java:707)
               at org.springframework.web.servlet.FrameworkServlet.service(FrameworkServlet.java:845)
               at javax.servlet.http.HttpServlet.service(HttpServlet.java:790)
               at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:808)
               at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1669)
               at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:316)
               at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java:126)
               at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.doFilter(FilterSecurityInterceptor.java:90)
               at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
               at org.springframework.security.web.access.ExceptionTranslationFilter.doFilter(ExceptionTranslationFilter.java:114)
               at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
               at org.springframework.security.web.session.SessionManagementFilter.doFilter(SessionManagementFilter.java:122)
               at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
               at org.springframework.security.web.servletapi.SecurityContextHolderAwareRequestFilter.doFilter(SecurityContextHolderAwareRequestFilter.java:169)
               at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
               at org.springframework.security.web.savedrequest.RequestCacheAwareFilter.doFilter(RequestCacheAwareFilter.java:48)
               at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
               at org.springframework.security.web.authentication.www.BasicAuthenticationFilter.doFilterInternal(BasicAuthenticationFilter.java:213)
               at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
               at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
               at org.springframework.security.web.authentication.logout.LogoutFilter.doFilter(LogoutFilter.java:120)
               at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
               at org.springframework.security.web.header.HeaderWriterFilter.doFilterInternal(HeaderWriterFilter.java:64)
               at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
               at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
               at org.springframework.security.web.context.SecurityContextPersistenceFilter.doFilter(SecurityContextPersistenceFilter.java:91)
               at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
               at org.springframework.security.web.context.request.async.WebAsyncManagerIntegrationFilter.doFilterInternal(WebAsyncManagerIntegrationFilter.java:53)
               at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
               at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
               at org.springframework.security.web.FilterChainProxy.doFilterInternal(FilterChainProxy.java:213)
               at org.springframework.security.web.FilterChainProxy.doFilter(FilterChainProxy.java:176)
               at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:346)
               at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:262)
               at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1652)
               at eu.etaxonomy.cdm.remote.DateHeaderFilter.doFilter(DateHeaderFilter.java:52)
               at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1652)
               at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:121)
               at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
               at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1652)
               at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:585)
               at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)
               at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:577)
               at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:223)
               at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1127)
               at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:515)
               at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:185)
               at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1061)
               at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
               at org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:215)
               at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:97)
               at org.eclipse.jetty.server.Server.handle(Server.java:497)
               at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:310)
               at org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:257)
               at org.eclipse.jetty.io.AbstractConnection$2.run(AbstractConnection.java:540)
               at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:635)
               at org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:555)
               at java.lang.Thread.run(Thread.java:748)
               at org.springframework.remoting.support.RemoteInvocationUtils.fillInClientStackTraceIfPossible(RemoteInvocationUtils.java:45)
               at org.springframework.remoting.support.RemoteInvocationResult.recreate(RemoteInvocationResult.java:149)
               at org.springframework.remoting.support.RemoteInvocationBasedAccessor.recreateRemoteInvocationResult(RemoteInvocationBasedAccessor.java:85)
               at org.springframework.remoting.httpinvoker.HttpInvokerClientInterceptor.invoke(HttpInvokerClientInterceptor.java:150)
               at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
               at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)
               at com.sun.proxy.$Proxy48.saveNewTaxonNode(Unknown Source)
               at eu.etaxonomy.taxeditor.newWizard.NewTaxonNodeWizard.saveEntity(NewTaxonNodeWizard.java:80)
               at eu.etaxonomy.taxeditor.newWizard.AbstractNewEntityWizard.performFinish(AbstractNewEntityWizard.java:54)
               at org.eclipse.jface.wizard.WizardDialog.finishPressed(WizardDialog.java:790)
               at org.eclipse.jface.wizard.WizardDialog.buttonPressed(WizardDialog.java:423)
               at org.eclipse.jface.dialogs.Dialog$2.widgetSelected(Dialog.java:618)
               at org.eclipse.swt.widgets.TypedListener.handleEvent(TypedListener.java:249)
               at org.eclipse.swt.widgets.EventTable.sendEvent(EventTable.java:84)
               at org.eclipse.swt.widgets.Display.sendEvent(Display.java:4418)
               at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1079)
               at org.eclipse.swt.widgets.Display.runDeferredEvents(Display.java:4236)
               at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:3824)
               at org.eclipse.jface.window.Window.runEventLoop(Window.java:818)
               at org.eclipse.jface.window.Window.open(Window.java:794)
               at eu.etaxonomy.taxeditor.navigation.navigator.e4.handler.NewTaxonNodeHandlerE4.execute(NewTaxonNodeHandlerE4.java:58)

Files

picture395-1.png (164 KB) picture395-1.png Andreas Müller, 04/17/2020 12:18 PM

Related issues

Related to EDIT - feature request #9078: Handle name parsing and deduplication on server sideClosedAndreas Müller

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