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task #8397

Algae Names Index - presentation

Added by Andreas Kohlbecker about 1 year ago. Updated about 1 year ago.

Status:
New
Priority:
Highest
Category:
DataPortal
Target version:
-
Start date:
07/23/2019
Due date:
% Done:

0%


Description

This ticket covers ideas, notes and requirement regarding the presentation of the PhycoBank Index in the portal

picture892-1.png View (94.6 KB) Wolf-Henning Kusber, 07/23/2019 06:45 PM


Related issues

Related to PhycoBank - feature request #8356: Algae Names Index - implementation In Progress 07/08/2019
Related to UTIS - bug #8400: scientific names in Aphia client responses are missing authors citation Closed 07/23/2019
Related to UTIS - feature request #8394: org.cybertaxonomy.utis.tnr.msg.TaxonName add URL field New 07/22/2019
Related to UTIS - bug #8401: WoRMS client returns synonym for accepted name Closed 07/23/2019

Associated revisions

Revision 975de0cc (diff)
Added by Andreas Kohlbecker about 1 year ago

ref #8397 adding default status message as hint to phycobank index

History

#1 Updated by Andreas Kohlbecker about 1 year ago

#2 Updated by Wolf-Henning Kusber about 1 year ago

  • Assignee changed from Wolf-Henning Kusber to Andreas Kohlbecker

UTIS search (Portal) as of 23 July 2019

PhycoBank Name links to taxon page and should link to species page
PhycoBank names have partly authors

"Navicula pseudosemenicula Rodionova, E.V. & Pomazkina, G.V. in Limnology and Freshwater Biology 2019(1): 187. 22.4.2019"
could be find with UTIS, this record is lacking standardised nomenclatural authors and, thus is under preparation.

Diatombase is perfectly connected. The only thing is that authors are missing. The entries are not duplicates but a name, a later homonym (heterotypic) and an isonym of the later homonym (with different reference and year). Search is not restricted: freshwater, marine and fossile diatoms are searchable.

Navicula abnormis
Checklist: DiatomBase
Navicula abnormis
Checklist: DiatomBase
Navicula abnormis
Checklist: DiatomBase

For authors see WorMS

WorMS:
standard filter is marine:
Marine species can be linked to directly
Example: Petroneis punctigera
Very strange: The searched name appear without authors but is displayed as synonym of the same name with authors - strange
May be "synonym for" could be replaced by "name author year"

#3 Updated by Andreas Kohlbecker about 1 year ago

  • Related to bug #8400: scientific names in Aphia client responses are missing authors citation added

#4 Updated by Andreas Kohlbecker about 1 year ago

Wolf-Henning Kusber wrote:

UTIS search (Portal) as of 23 July 2019

PhycoBank Name links to taxon page and should link to species page

... is handled in #8394

PhycoBank names have partly authors

"Navicula pseudosemenicula Rodionova, E.V. & Pomazkina, G.V. in Limnology and Freshwater Biology 2019(1): 187. 22.4.2019"
could be find with UTIS, this record is lacking standardised nomenclatural authors and, thus is under preparation.

Diatombase is perfectly connected. The only thing is that authors are missing. The entries are not duplicates but a name, a later homonym (heterotypic) and an isonym of the later homonym (with different reference and year). Search is not restricted: freshwater, marine and fossile diatoms are searchable.

... is handled in #8400

WorMS:
standard filter is marine:
Marine species can be linked to directly

Example: Petroneis punctigera
Very strange: The searched name appear without authors but is displayed as synonym of the same name with authors - strange
May be "synonym for" could be replaced by "name author year"

... is handled in #8401

#5 Updated by Andreas Kohlbecker about 1 year ago

#6 Updated by Andreas Kohlbecker about 1 year ago

  • Related to bug #8401: WoRMS client returns synonym for accepted name added

#7 Updated by Wolf-Henning Kusber about 1 year ago

Just an Idea to make UTIS usable for Vaadin data entries.

There are two possibilities to place this feature, (i) in list view [not recommendet], (ii) in the Name editor.

Proposed place (see Screen shot) "Check if this name already occurs in other data sources" or "Check if this name already occurs in the PhycoBank Index".

There could be (a) just a link to the Portal page [new tab], (b) a name field for a name with hand over to UTIS search in a new tab, or (c) full integration?

#8 Updated by Wolf-Henning Kusber about 1 year ago

UTIS request for names, entered in PhycoBank some time ago (or recently) failes, if only clickbox Phycobank is used:
Examples:
Planothidium victori
Planothidium caputium
Sanguina

#9 Updated by Andreas Kohlbecker about 1 year ago

Wolf-Henning Kusber wrote:

UTIS request for names, entered in PhycoBank some time ago (or recently) failes, if only clickbox Phycobank is used:
Examples:
Planothidium victori
Planothidium caputium
Sanguina

This problem has already been fixed and will become available with the next release.

#10 Updated by Andreas Kohlbecker about 1 year ago

Wolf-Henning Kusber wrote:

Just an Idea to make UTIS usable for Vaadin data entries.

There are two possibilities to place this feature, (i) in list view [not recommendet], (ii) in the Name editor.

Proposed place (see Screen shot)... or "Check if this name already occurs in the PhycoBank Index".

implemented by commit:cdm-vaadin|975de0c

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