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bug #8088

open

Open taxon node wizard issues

Added by Andreas Müller about 5 years ago. Updated almost 5 years ago.

Status:
Feedback
Priority:
Highest
Assignee:
Katja Luther
Category:
taxeditor
Target version:
Release 5.8
Start date:
Due date:
% Done:

50%

Estimated time:
Severity:
critical
Found in Version:

Description

Urgent: reenable taxon selection for reusing taxa (see #8088#note-3) => hotfix 5.5.1

Copied from #7794

  • Classification selection for top level taxa (#7794#note-12)
  • If labels of existing data are long the wizard becomes extremely large, it should work with line break, truncation or scrolling and have always the same size except for users changing the size
  • Remove remaining classification chooser (#7794#note-9 and #7794 attachement picture585-1.png)
  • Show "Parent Child Relation Source" and "Detail" below Parent, with identation and shorten label to "Parent Relation Source" or simply "Relation Source" if identation is obvious enough
  • Alternatively: move all taxon node information (parent + relSource, classification) down below taxon information (name, sec, is public) (#7794#note-5, second part)
  • in EDIT mode:
    • do not show sec ref as it is usually part of the taxon title (minor) or at least disable lable
    • show parent instead of classification

Fixes for Hotfix 5.5.1:

  • TOE (see comment 7) and LLE (see comment 9) in saveNewTaxonNode fixed
  • Taxon Selection in Edit and New Wizard added

Files

picture661-1.png (109 KB) picture661-1.png Patrick Plitzner, 04/03/2019 04:06 PM

Related issues

Related to EDIT - bug #8223: Urgent TaxonNode wizard issuesResolvedAndreas Müller

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Copied from EDIT - bug #7794: Update TaxonNodeWizardClosedKatja Luther

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 #1

Updated by Andreas Müller about 5 years ago

  • Description updated (diff)
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 #2

Updated by Andreas Müller about 5 years ago

  • Copied from bug #7794: Update TaxonNodeWizard added
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 #3

Updated by Andreas Müller about 5 years ago

  • Description updated (diff)
  • Priority changed from New to Highest
  • Severity changed from normal to critical

Something went wrong in previous ticket #7794. The taxon itself should be selectable for both "New" and "Edit" mode. Currently it is not selectable in any of them. If not selectable it is impossible to reuse a taxon (a functionality that we currently use e.g. in phycobank and therefore it is urgent).

In both cases, if a taxon is reused the other taxon attributes should not be editable (like in "Edit" mode anyway). For "New" we also need a "remove" taxon selection button to reenable manual entering of a new taxon.

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 #4

Updated by Andreas Müller about 5 years ago

  • Description updated (diff)
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 #5

Updated by Andreas Müller about 5 years ago

  • Description updated (diff)
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 #6

Updated by Andreas Müller about 5 years ago

  • Target version changed from Release 5.6 to Reviewed Next Major Release
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 #7

Updated by Katja Luther about 5 years ago

  • Target version changed from Reviewed Next Major Release to Release 5.6

Ich habe versucht das Taxon eines Taxonnodes zu ändern und bekam den Fehler unten.
Gibt es dafür schon ein Ticket? Kannst du die Meldung da rein pasten. Ist dringend für den Hotfix.

AM


login : admin
editor version : 5.6.0.201902191749
server : test.e-taxonomy.eu (edit-test) / rem_conf_am
schema version : 5.0.0.0.20180514
os : Windows Server 2012 R2 6.3 amd64
java : 1.8.0_121
org.springframework.dao.InvalidDataAccessApiUsageException: object references an unsaved transient instance - save the transient instance before flushing: eu.etaxonomy.cdm.model.taxon.TaxonNode; nested exception is org.hibernate.TransientObjectException: object references an unsaved transient instance - save the transient instance before flushing: eu.etaxonomy.cdm.model.taxon.TaxonNode
               at org.springframework.orm.hibernate5.SessionFactoryUtils.convertHibernateAccessException(SessionFactoryUtils.java:191)
               at org.springframework.orm.hibernate5.HibernateTransactionManager.convertHibernateAccessException(HibernateTransactionManager.java:741)
               at org.springframework.orm.hibernate5.HibernateTransactionManager.doCommit(HibernateTransactionManager.java:589)
               at org.springframework.transaction.support.AbstractPlatformTransactionManager.processCommit(AbstractPlatformTransactionManager.java:761)
               at org.springframework.transaction.support.AbstractPlatformTransactionManager.commit(AbstractPlatformTransactionManager.java:730)
               at org.springframework.transaction.interceptor.TransactionAspectSupport.commitTransactionAfterReturning(TransactionAspectSupport.java:485)
               at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:291)
               at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
               at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
               at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)
      ....
Caused by: org.hibernate.TransientObjectException: object references an unsaved transient instance - save the transient instance before flushing: eu.etaxonomy.cdm.model.taxon.TaxonNode
               at org.hibernate.engine.internal.ForeignKeys.getEntityIdentifierIfNotUnsaved(ForeignKeys.java:279)
               at org.hibernate.type.EntityType.getIdentifier(EntityType.java:455)
               at org.hibernate.type.ManyToOneType.nullSafeSet(ManyToOneType.java:144)
               at org.hibernate.persister.collection.AbstractCollectionPersister.writeElement(AbstractCollectionPersister.java:888)
               at org.hibernate.persister.collection.OneToManyPersister.writeIndex(OneToManyPersister.java:244)
               at org.hibernate.persister.collection.OneToManyPersister.insertRows(OneToManyPersister.java:178)
               at org.hibernate.action.internal.CollectionUpdateAction.execute(CollectionUpdateAction.java:85)
               at org.hibernate.engine.spi.ActionQueue.executeActions(ActionQueue.java:560)
               at org.hibernate.engine.spi.ActionQueue.executeActions(ActionQueue.java:434)
               at org.hibernate.event.internal.AbstractFlushingEventListener.performExecutions(AbstractFlushingEventListener.java:337)
               at org.hibernate.event.internal.DefaultFlushEventListener.onFlush(DefaultFlushEventListener.java:39)
               at org.hibernate.internal.SessionImpl.flush(SessionImpl.java:1282)
               at org.hibernate.internal.SessionImpl.managedFlush(SessionImpl.java:465)
               at org.hibernate.internal.SessionImpl.flushBeforeTransactionCompletion(SessionImpl.java:2963)
               at org.hibernate.internal.SessionImpl.beforeTransactionCompletion(SessionImpl.java:2339)
               at org.hibernate.engine.jdbc.internal.JdbcCoordinatorImpl.beforeTransactionCompletion(JdbcCoordinatorImpl.java:485)
               at org.hibernate.resource.transaction.backend.jdbc.internal.JdbcResourceLocalTransactionCoordinatorImpl.beforeCompletionCallback(JdbcResourceLocalTransactionCoordinatorImpl.java:147)
               at org.hibernate.resource.transaction.backend.jdbc.internal.JdbcResourceLocalTransactionCoordinatorImpl.access$100(JdbcResourceLocalTransactionCoordinatorImpl.java:38)
               at org.hibernate.resource.transaction.backend.jdbc.internal.JdbcResourceLocalTransactionCoordinatorImpl$TransactionDriverControlImpl.commit(JdbcResourceLocalTransactionCoordinatorImpl.java:231)
               at org.hibernate.engine.transaction.internal.TransactionImpl.commit(TransactionImpl.java:65)
               at org.springframework.orm.hibernate5.HibernateTransactionManager.doCommit(HibernateTransactionManager.java:581)
               ... 154 more
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 #8

Updated by Katja Luther about 5 years ago

  • Description updated (diff)
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 #9

Updated by Katja Luther about 5 years ago

Hallo,

bekomme diese Fehlermeldung beim Anlegen eines neuen Taxons.

viele Grüße und schöne WE
Nadja


login : n.korotkova
editor version : 5.5.0
server : api.cybertaxonomy.org (cybertaxonomy.org) / caryophyllales_spp
schema version : 5.0.0.0.20180514
os : Windows 7 6.1 amd64
java : 1.8.0_20
org.hibernate.LazyInitializationException: could not initialize proxy - no Session
                at org.hibernate.proxy.AbstractLazyInitializer.initialize(AbstractLazyInitializer.java:148)
                at org.hibernate.proxy.AbstractLazyInitializer.getImplementation(AbstractLazyInitializer.java:266)
                at org.hibernate.proxy.pojo.javassist.JavassistLazyInitializer.invoke(JavassistLazyInitializer.java:68)
                at eu.etaxonomy.cdm.model.taxon.TaxonNode_$$_jvsta01_6c.treeIndex(TaxonNode_$$_jvsta01_6c.java)
                at eu.etaxonomy.cdm.persistence.hibernate.SaveOrUpdateEntityListener.reindex(SaveOrUpdateEntityListener.java:55)
                at eu.etaxonomy.cdm.persistence.hibernate.SaveOrUpdateEntityListener.saveOrUpdate(SaveOrUpdateEntityListener.java:39)
                at eu.etaxonomy.cdm.persistence.hibernate.SaveOrUpdateEntityListener.onSaveOrUpdate(SaveOrUpdateEntityListener.java:29)
                at org.hibernate.internal.SessionImpl.fireSaveOrUpdate(SessionImpl.java:648)
                at org.hibernate.internal.SessionImpl.saveOrUpdate(SessionImpl.java:640)
                at org.hibernate.engine.spi.CascadingActions$5.cascade(CascadingActions.java:218)
                at org.hibernate.engine.internal.Cascade.cascadeToOne(Cascade.java:398)
                at org.hibernate.engine.internal.Cascade.cascadeAssociation(Cascade.java:323)
                at org.hibernate.engine.internal.Cascade.cascadeProperty(Cascade.java:162)
                at org.hibernate.engine.internal.Cascade.cascade(Cascade.java:111)
                at org.hibernate.engine.internal.Cascade.cascade(Cascade.java:61)
                at org.hibernate.event.internal.DefaultSaveOrUpdateEventListener.cascadeOnUpdate(DefaultSaveOrUpdateEventListener.java:358)
                at org.hibernate.event.internal.DefaultSaveOrUpdateEventListener.performUpdate(DefaultSaveOrUpdateEventListener.java:332)
                at org.hibernate.event.internal.DefaultSaveOrUpdateEventListener.entityIsDetached(DefaultSaveOrUpdateEventListener.java:227)
                at org.hibernate.event.internal.DefaultSaveOrUpdateEventListener.performSaveOrUpdate(DefaultSaveOrUpdateEventListener.java:92)
                at org.hibernate.event.internal.DefaultSaveOrUpdateEventListener.onSaveOrUpdate(DefaultSaveOrUpdateEventListener.java:73)
                at org.hibernate.internal.SessionImpl.fireSaveOrUpdate(SessionImpl.java:648)
                at org.hibernate.internal.SessionImpl.saveOrUpdate(SessionImpl.java:640)
                at org.hibernate.engine.spi.CascadingActions$5.cascade(CascadingActions.java:218)
                at org.hibernate.engine.internal.Cascade.cascadeToOne(Cascade.java:398)
                at org.hibernate.engine.internal.Cascade.cascadeAssociation(Cascade.java:323)
                at org.hibernate.engine.internal.Cascade.cascadeProperty(Cascade.java:162)
                at org.hibernate.engine.internal.Cascade.cascade(Cascade.java:111)
                at org.hibernate.event.internal.AbstractSaveEventListener.cascadeBeforeSave(AbstractSaveEventListener.java:425)
                at org.hibernate.event.internal.AbstractSaveEventListener.performSaveOrReplicate(AbstractSaveEventListener.java:249)
                at org.hibernate.event.internal.AbstractSaveEventListener.performSave(AbstractSaveEventListener.java:178)
                at org.hibernate.event.internal.AbstractSaveEventListener.saveWithGeneratedId(AbstractSaveEventListener.java:121)
                at org.hibernate.event.internal.DefaultSaveOrUpdateEventListener.saveWithGeneratedOrRequestedId(DefaultSaveOrUpdateEventListener.java:192)
                at org.hibernate.event.internal.DefaultSaveOrUpdateEventListener.entityIsTransient(DefaultSaveOrUpdateEventListener.java:177)
                at org.hibernate.event.internal.DefaultSaveOrUpdateEventListener.performSaveOrUpdate(DefaultSaveOrUpdateEventListener.java:97)
                at org.hibernate.event.internal.DefaultSaveOrUpdateEventListener.onSaveOrUpdate(DefaultSaveOrUpdateEventListener.java:73)
                at org.hibernate.internal.SessionImpl.fireSaveOrUpdate(SessionImpl.java:648)
                at org.hibernate.internal.SessionImpl.saveOrUpdate(SessionImpl.java:640)
                at org.hibernate.engine.spi.CascadingActions$5.cascade(CascadingActions.java:218)
                at org.hibernate.engine.internal.Cascade.cascadeToOne(Cascade.java:398)
                at org.hibernate.engine.internal.Cascade.cascadeAssociation(Cascade.java:323)
                at org.hibernate.engine.internal.Cascade.cascadeProperty(Cascade.java:162)
                at org.hibernate.engine.internal.Cascade.cascadeCollectionElements(Cascade.java:431)
                at org.hibernate.engine.internal.Cascade.cascadeCollection(Cascade.java:363)
                at org.hibernate.engine.internal.Cascade.cascadeAssociation(Cascade.java:326)
                at org.hibernate.engine.internal.Cascade.cascadeProperty(Cascade.java:162)
                at org.hibernate.engine.internal.Cascade.cascade(Cascade.java:111)
                at org.hibernate.event.internal.AbstractSaveEventListener.cascadeAfterSave(AbstractSaveEventListener.java:456)
                at org.hibernate.event.internal.AbstractSaveEventListener.performSaveOrReplicate(AbstractSaveEventListener.java:278)
                at org.hibernate.event.internal.AbstractSaveEventListener.performSave(AbstractSaveEventListener.java:178)
                at org.hibernate.event.internal.AbstractSaveEventListener.saveWithGeneratedId(AbstractSaveEventListener.java:121)
                at org.hibernate.event.internal.DefaultSaveOrUpdateEventListener.saveWithGeneratedOrRequestedId(DefaultSaveOrUpdateEventListener.java:192)
                at org.hibernate.event.internal.DefaultSaveOrUpdateEventListener.entityIsTransient(DefaultSaveOrUpdateEventListener.java:177)
                at org.hibernate.event.internal.DefaultSaveOrUpdateEventListener.performSaveOrUpdate(DefaultSaveOrUpdateEventListener.java:97)
                at org.hibernate.event.internal.DefaultSaveOrUpdateEventListener.onSaveOrUpdate(DefaultSaveOrUpdateEventListener.java:73)
                at org.hibernate.internal.SessionImpl.fireSaveOrUpdate(SessionImpl.java:648)
                at org.hibernate.internal.SessionImpl.saveOrUpdate(SessionImpl.java:640)
                at org.hibernate.internal.SessionImpl.saveOrUpdate(SessionImpl.java:635)
                at eu.etaxonomy.cdm.persistence.dao.hibernate.common.CdmEntityDaoBase.saveOrUpdate(CdmEntityDaoBase.java:341)
                at eu.etaxonomy.cdm.api.service.ServiceBase.saveOrUpdate(ServiceBase.java:285)
                at eu.etaxonomy.cdm.api.service.ServiceBase.saveOrUpdate(ServiceBase.java:42)
                at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
                at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
                at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
                at java.lang.reflect.Method.invoke(Method.java:498)
                at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:302)
                at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
                at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
                at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:281)
                at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
                at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)
                at com.sun.proxy.$Proxy1733.saveOrUpdate(Unknown Source)
                at eu.etaxonomy.cdm.api.service.TaxonNodeServiceImpl.saveNewTaxonNode(TaxonNodeServiceImpl.java:866)
                at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
                at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
                at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
                at java.lang.reflect.Method.invoke(Method.java:498)
                at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:302)
                at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
                at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
                at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:281)
                at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
                at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)
                at com.sun.proxy.$Proxy1744.saveNewTaxonNode(Unknown Source)
                at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
                at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
                at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
                at java.lang.reflect.Method.invoke(Method.java:498)
                at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:302)
                at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
                at org.springframework.remoting.support.RemoteInvocationTraceInterceptor.invoke(RemoteInvocationTraceInterceptor.java:78)
                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
                at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)
                at com.sun.proxy.$Proxy2013.saveNewTaxonNode(Unknown Source)
                at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
...
                at org.springframework.remoting.support.RemoteInvocationBasedAccessor.recreateRemoteInvocationResult(RemoteInvocationBasedAccessor.java:85)
                at org.springframework.remoting.httpinvoker.HttpInvokerClientInterceptor.invoke(HttpInvokerClientInterceptor.java:150)
                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
                at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)
                at com.sun.proxy.$Proxy48.saveNewTaxonNode(Unknown Source)
                at eu.etaxonomy.taxeditor.newWizard.NewTaxonNodeWizard.saveEntity(NewTaxonNodeWizard.java:80)
                at eu.etaxonomy.taxeditor.newWizard.AbstractNewEntityWizard.performFinish(AbstractNewEntityWizard.java:54)
                at org.eclipse.jface.wizard.WizardDialog.finishPressed(WizardDialog.java:790)
                at org.eclipse.jface.wizard.WizardDialog.buttonPressed(WizardDialog.java:423)
                at org.eclipse.jface.dialogs.Dialog$2.widgetSelected(Dialog.java:618)
                at org.eclipse.swt.widgets.TypedListener.handleEvent(TypedListener.java:249)
                at org.eclipse.swt.widgets.EventTable.sendEvent(EventTable.java:84)
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 #10

Updated by Katja Luther about 5 years ago

  • Description updated (diff)
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 #11

Updated by Andreas Müller about 5 years ago

  • Description updated (diff)
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 #12

Updated by Katja Luther about 5 years ago

  • Description updated (diff)
  • Status changed from New to Resolved
  • Assignee changed from Katja Luther to Andreas Müller

please review the hotfix tasks.

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 #13

Updated by Andreas Müller about 5 years ago

  • Description updated (diff)

The hotfix tasks seem to work now.

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 #14

Updated by Katja Luther about 5 years ago

  • Assignee changed from Andreas Müller to Patrick Plitzner
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 #15

Updated by Patrick Plitzner about 5 years ago

Tested on nightly.

  • taxon selection is possible in edit and new wizard
  • #8088#note-7 works
  • #8088#note-9 still throws an exception. I tried to add a child node and just specified the name and hit Finish (see image)

login : admin
editor version : 5.6.0.201904031330
server : 160.45.63.175 (edit-test) / rem_conf_am
schema version : 5.5.0.0.20190221
os : Linux 4.15.0-46-generic amd64
java : 1.8.0_121
org.hibernate.LazyInitializationException: could not initialize proxy - no Session
    at org.hibernate.proxy.AbstractLazyInitializer.initialize(AbstractLazyInitializer.java:148)
    at org.hibernate.proxy.AbstractLazyInitializer.getImplementation(AbstractLazyInitializer.java:266)
    at org.hibernate.proxy.pojo.javassist.JavassistLazyInitializer.invoke(JavassistLazyInitializer.java:68)
    at eu.etaxonomy.cdm.model.agent.TeamOrPersonBase_$$_jvstcd8_62.getTitleCache(TeamOrPersonBase_$$_jvstcd8_62.java)
    at eu.etaxonomy.cdm.strategy.cache.taxon.TaxonBaseDefaultCacheStrategy.getSecundumTags(TaxonBaseDefaultCacheStrategy.java:136)
    at eu.etaxonomy.cdm.strategy.cache.taxon.TaxonBaseDefaultCacheStrategy.getTaggedTitle(TaxonBaseDefaultCacheStrategy.java:81)
    at eu.etaxonomy.cdm.strategy.cache.taxon.TaxonBaseDefaultCacheStrategy.getTitleCache(TaxonBaseDefaultCacheStrategy.java:158)
    at eu.etaxonomy.cdm.strategy.cache.taxon.TaxonBaseDefaultCacheStrategy.getTitleCache(TaxonBaseDefaultCacheStrategy.java:46)
    at eu.etaxonomy.cdm.strategy.cache.taxon.TaxonBaseDefaultCacheStrategy.getTitleCache(TaxonBaseDefaultCacheStrategy.java:1)
    at eu.etaxonomy.cdm.model.common.IdentifiableEntity.generateTitle(IdentifiableEntity.java:591)
    at eu.etaxonomy.cdm.model.common.IdentifiableEntity.getTitleCache(IdentifiableEntity.java:206)
    at eu.etaxonomy.cdm.persistence.hibernate.CdmPreDataChangeListener.generateCaches(CdmPreDataChangeListener.java:151)
    at eu.etaxonomy.cdm.persistence.hibernate.CacheStrategyGenerator.saveOrUpdateOrMerge(CacheStrategyGenerator.java:48)
    at eu.etaxonomy.cdm.persistence.hibernate.CacheStrategyGenerator.onSaveOrUpdate(CacheStrategyGenerator.java:33)
    at org.hibernate.internal.SessionImpl.fireSaveOrUpdate(SessionImpl.java:648)
    at org.hibernate.internal.SessionImpl.saveOrUpdate(SessionImpl.java:640)
    at org.hibernate.internal.SessionImpl.saveOrUpdate(SessionImpl.java:635)
    at eu.etaxonomy.cdm.persistence.dao.hibernate.common.CdmEntityDaoBase.saveOrUpdate(CdmEntityDaoBase.java:341)
    at eu.etaxonomy.cdm.api.service.ServiceBase.saveOrUpdate(ServiceBase.java:285)
    at eu.etaxonomy.cdm.api.service.ServiceBase.saveOrUpdate(ServiceBase.java:42)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:498)
    at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:302)
    at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
    at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
    at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
    at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:281)
    at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
    at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
    at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)
    at com.sun.proxy.$Proxy658.saveOrUpdate(Unknown Source)
    at eu.etaxonomy.cdm.api.service.TaxonNodeServiceImpl.saveNewTaxonNode(TaxonNodeServiceImpl.java:874)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:498)
    at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:302)
    at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
    at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
    at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
    at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:281)
    at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
    at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
    at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)
    at com.sun.proxy.$Proxy670.saveNewTaxonNode(Unknown Source)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:498)
    at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:302)
    at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
    at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
    at org.springframework.remoting.support.RemoteInvocationTraceInterceptor.invoke(RemoteInvocationTraceInterceptor.java:78)
    at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
    at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)
    at com.sun.proxy.$Proxy998.saveNewTaxonNode(Unknown Source)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:498)
    at org.springframework.remoting.support.RemoteInvocation.invoke(RemoteInvocation.java:212)
    at org.springframework.remoting.support.DefaultRemoteInvocationExecutor.invoke(DefaultRemoteInvocationExecutor.java:39)
    at org.springframework.remoting.support.RemoteInvocationBasedExporter.invoke(RemoteInvocationBasedExporter.java:78)
    at org.springframework.remoting.support.RemoteInvocationBasedExporter.invokeAndCreateResult(RemoteInvocationBasedExporter.java:114)
    at org.springframework.remoting.httpinvoker.HttpInvokerServiceExporter.handleRequest(HttpInvokerServiceExporter.java:74)
    at org.springframework.web.servlet.mvc.HttpRequestHandlerAdapter.handle(HttpRequestHandlerAdapter.java:51)
    at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:959)
    at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:893)
    at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:969)
    at org.springframework.web.servlet.FrameworkServlet.doPost(FrameworkServlet.java:871)
    at javax.servlet.http.HttpServlet.service(HttpServlet.java:707)
    at org.springframework.web.servlet.FrameworkServlet.service(FrameworkServlet.java:845)
    at javax.servlet.http.HttpServlet.service(HttpServlet.java:790)
    at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:808)
    at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1669)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:316)
    at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java:126)
    at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.doFilter(FilterSecurityInterceptor.java:90)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
    at org.springframework.security.web.access.ExceptionTranslationFilter.doFilter(ExceptionTranslationFilter.java:114)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
    at org.springframework.security.web.session.SessionManagementFilter.doFilter(SessionManagementFilter.java:122)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
    at org.springframework.security.web.servletapi.SecurityContextHolderAwareRequestFilter.doFilter(SecurityContextHolderAwareRequestFilter.java:169)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
    at org.springframework.security.web.savedrequest.RequestCacheAwareFilter.doFilter(RequestCacheAwareFilter.java:48)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
    at org.springframework.security.web.authentication.www.BasicAuthenticationFilter.doFilterInternal(BasicAuthenticationFilter.java:213)
    at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
    at org.springframework.security.web.authentication.logout.LogoutFilter.doFilter(LogoutFilter.java:120)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
    at org.springframework.security.web.header.HeaderWriterFilter.doFilterInternal(HeaderWriterFilter.java:64)
    at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
    at org.springframework.security.web.context.SecurityContextPersistenceFilter.doFilter(SecurityContextPersistenceFilter.java:91)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
    at org.springframework.security.web.context.request.async.WebAsyncManagerIntegrationFilter.doFilterInternal(WebAsyncManagerIntegrationFilter.java:53)
    at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
    at org.springframework.security.web.FilterChainProxy.doFilterInternal(FilterChainProxy.java:213)
    at org.springframework.security.web.FilterChainProxy.doFilter(FilterChainProxy.java:176)
    at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:346)
    at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:262)
    at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1652)
    at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:121)
    at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
    at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1652)
    at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:585)
    at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)
    at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:577)
    at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:223)
    at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1127)
    at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:515)
    at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:185)
    at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1061)
    at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
    at org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:215)
    at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:97)
    at org.eclipse.jetty.server.Server.handle(Server.java:497)
    at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:310)
    at org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:257)
    at org.eclipse.jetty.io.AbstractConnection$2.run(AbstractConnection.java:540)
    at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:635)
    at org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:555)
    at java.lang.Thread.run(Thread.java:748)
    at org.springframework.remoting.support.RemoteInvocationUtils.fillInClientStackTraceIfPossible(RemoteInvocationUtils.java:45)
    at org.springframework.remoting.support.RemoteInvocationResult.recreate(RemoteInvocationResult.java:149)
    at org.springframework.remoting.support.RemoteInvocationBasedAccessor.recreateRemoteInvocationResult(RemoteInvocationBasedAccessor.java:85)
    at org.springframework.remoting.httpinvoker.HttpInvokerClientInterceptor.invoke(HttpInvokerClientInterceptor.java:150)
    at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
    at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)
    at com.sun.proxy.$Proxy48.saveNewTaxonNode(Unknown Source)
    at eu.etaxonomy.taxeditor.newWizard.NewTaxonNodeWizard.saveEntity(NewTaxonNodeWizard.java:79)
    at eu.etaxonomy.taxeditor.newWizard.AbstractNewEntityWizard.performFinish(AbstractNewEntityWizard.java:54)
    at org.eclipse.jface.wizard.WizardDialog.finishPressed(WizardDialog.java:790)
    at org.eclipse.jface.wizard.WizardDialog.buttonPressed(WizardDialog.java:423)
    at org.eclipse.jface.dialogs.Dialog$2.widgetSelected(Dialog.java:618)
    at org.eclipse.swt.widgets.TypedListener.handleEvent(TypedListener.java:249)
    at org.eclipse.swt.widgets.EventTable.sendEvent(EventTable.java:84)
    at org.eclipse.swt.widgets.Display.sendEvent(Display.java:5227)
    at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1340)
    at org.eclipse.swt.widgets.Display.runDeferredEvents(Display.java:4561)
    at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:4151)
    at org.eclipse.jface.window.Window.runEventLoop(Window.java:818)
    at org.eclipse.jface.window.Window.open(Window.java:794)
    at eu.etaxonomy.taxeditor.navigation.navigator.e4.handler.NewTaxonNodeHandlerE4.execute(NewTaxonNodeHandlerE4.java:57)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:498)
    at org.eclipse.e4.core.internal.di.MethodRequestor.execute(MethodRequestor.java:55)
    at org.eclipse.e4.core.internal.di.InjectorImpl.invokeUsingClass(InjectorImpl.java:282)
    at org.eclipse.e4.core.internal.di.InjectorImpl.invoke(InjectorImpl.java:264)
    at org.eclipse.e4.core.contexts.ContextInjectionFactory.invoke(ContextInjectionFactory.java:132)
    at org.eclipse.e4.core.commands.internal.HandlerServiceHandler.execute(HandlerServiceHandler.java:152)
    at org.eclipse.core.commands.Command.executeWithChecks(Command.java:494)
    at org.eclipse.core.commands.ParameterizedCommand.executeWithChecks(ParameterizedCommand.java:488)
    at org.eclipse.e4.core.commands.internal.HandlerServiceImpl.executeHandler(HandlerServiceImpl.java:210)
    at org.eclipse.e4.ui.workbench.renderers.swt.HandledContributionItem.executeItem(HandledContributionItem.java:433)
    at org.eclipse.e4.ui.workbench.renderers.swt.AbstractContributionItem.handleWidgetSelection(AbstractContributionItem.java:454)
    at org.eclipse.e4.ui.workbench.renderers.swt.AbstractContributionItem$3.handleEvent(AbstractContributionItem.java:482)
    at org.eclipse.swt.widgets.EventTable.sendEvent(EventTable.java:84)
    at org.eclipse.swt.widgets.Display.sendEvent(Display.java:5227)
    at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1340)
    at org.eclipse.swt.widgets.Display.runDeferredEvents(Display.java:4561)
    at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:4151)
    at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine$4.run(PartRenderingEngine.java:1121)
    at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:336)
    at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine.run(PartRenderingEngine.java:1022)
    at org.eclipse.e4.ui.internal.workbench.E4Workbench.createAndRunUI(E4Workbench.java:150)
    at org.eclipse.ui.internal.Workbench$5.run(Workbench.java:693)
    at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:336)
    at org.eclipse.ui.internal.Workbench.createAndRunWorkbench(Workbench.java:610)
    at org.eclipse.ui.PlatformUI.createAndRunWorkbench(PlatformUI.java:148)
    at eu.etaxonomy.taxeditor.Application.start(Application.java:24)
    at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196)
    at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:134)
    at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104)
    at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:388)
    at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:243)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:498)
    at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:673)
    at org.eclipse.equinox.launcher.Main.basicRun(Main.java:610)
    at org.eclipse.equinox.launcher.Main.run(Main.java:1519)
    at org.eclipse.equinox.launcher.Main.main(Main.java:1492)
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 #16

Updated by Katja Luther about 5 years ago

this should be fixed with the last commit in cdmlib

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 #17

Updated by Katja Luther about 5 years ago

  • Status changed from Feedback to Resolved
  • Assignee changed from Katja Luther to Patrick Plitzner
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 #18

Updated by Patrick Plitzner about 5 years ago

  • Assignee changed from Patrick Plitzner to Andreas Müller
  • % Done changed from 0 to 50

The exception when creating a new taxon is now also fixed. Tested on nightly

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 #19

Updated by Andreas Müller about 5 years ago

  • Status changed from Resolved to Feedback
  • Assignee changed from Andreas Müller to Katja Luther

Classification selection for top level taxa

This is not yet fixed

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 #20

Updated by Andreas Müller about 5 years ago

Andreas Müller wrote:

Classification selection for top level taxa

This is not yet fixed

At least for new taxon nodes it is not shown at all and also not selectable. For existing nodes it is shown but not selectable (which might be acceptable as nodes can be moved via move operation)

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 #21

Updated by Katja Luther about 5 years ago

Sorry, the review should be done only on the hotfix tasks, I will split this ticket.

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 #22

Updated by Katja Luther about 5 years ago

  • Status changed from Feedback to In Progress

moved all fixed issues to a new ticket

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 #23

Updated by Katja Luther about 5 years ago

  • Related to bug #8221: When changing nomenclatural code the name detail elements are not available anymore added
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 #24

Updated by Katja Luther about 5 years ago

  • Related to deleted (bug #8221: When changing nomenclatural code the name detail elements are not available anymore)
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 #25

Updated by Katja Luther about 5 years ago

  • Related to bug #8223: Urgent TaxonNode wizard issues added
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 #26

Updated by Katja Luther about 5 years ago

  • Target version changed from Release 5.6 to Release 5.7

the urgent issues are handled in #8223, the rest will be implemented in 5.7

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 #27

Updated by Katja Luther almost 5 years ago

  • Target version changed from Release 5.7 to Release 5.8
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 #28

Updated by Andreas Müller almost 5 years ago

  • Status changed from In Progress to Feedback

can we close this and create a new ticket with open issues? There are already several commits on this ticket.
Let me know if I should review something.

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