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bug #7945
closedTaxonNamePopupEditor: missing genus causes exception when updating name parts visibility
Start date:
Due date:
% Done:
0%
Estimated time:
Severity:
normal
Found in Version:
Description
Incomplete data (missing genus) can result in exceptions being thrown:
org.hibernate.HibernateException: A collection with cascade="all-delete-orphan" was no longer referenced by the owning entity instance: eu.etaxonomy.cdm.model.common.DefinedTermBase.representations at org.hibernate.engine.internal.Collections.processDereferencedCollection(Collections.java:99) at org.hibernate.engine.internal.Collections.processUnreachableCollection(Collections.java:50) at org.hibernate.event.internal.AbstractFlushingEventListener.flushCollections(AbstractFlushingEventListener.java:243) at org.hibernate.event.internal.AbstractFlushingEventListener.flushEverythingToExecutions(AbstractFlushingEventListener.java:86) at org.hibernate.event.internal.DefaultAutoFlushEventListener.onAutoFlush(DefaultAutoFlushEventListener.java:44) at org.hibernate.internal.SessionImpl.autoFlushIfRequired(SessionImpl.java:1251) at org.hibernate.internal.SessionImpl.list(SessionImpl.java:1319) at org.hibernate.internal.QueryImpl.list(QueryImpl.java:87) at org.hibernate.internal.AbstractQueryImpl.uniqueResult(AbstractQueryImpl.java:960) at eu.etaxonomy.cdm.persistence.dao.hibernate.name.TaxonNameDaoHibernateImpl.countTaxonNameParts(TaxonNameDaoHibernateImpl.java:997) at eu.etaxonomy.cdm.api.service.NameServiceImpl.findTaxonNameParts(NameServiceImpl.java:354) at eu.etaxonomy.cdm.api.service.NameServiceImpl.findTaxonNameParts(NameServiceImpl.java:375) at sun.reflect.GeneratedMethodAccessor1781.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:302) at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157) at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99) at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:281) at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179) at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208) at com.sun.proxy.$Proxy611.findTaxonNameParts(Unknown Source) at eu.etaxonomy.cdm.service.TaxonNameStringFilterablePagingProvider.size(TaxonNameStringFilterablePagingProvider.java:196) at org.vaadin.viritin.fields.LazyComboBox$7.size(LazyComboBox.java:261) at org.vaadin.viritin.LazyList.size(LazyList.java:229) at org.vaadin.viritin.LazyList$1.<init>(LazyList.java:302) at org.vaadin.viritin.LazyList.iterator(LazyList.java:299) at java.util.AbstractCollection.contains(AbstractCollection.java:99) at org.vaadin.viritin.LazyList.contains(LazyList.java:284) at eu.etaxonomy.vaadin.component.WeaklyRelatedEntityCombobox.setValue(WeaklyRelatedEntityCombobox.java:199) at eu.etaxonomy.cdm.vaadin.view.name.TaxonNameEditorPresenter.onFieldReplaceEvent(TaxonNameEditorPresenter.java:379) at sun.reflect.GeneratedMethodAccessor1906.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at org.vaadin.spring.events.internal.MethodListenerWrapper.publish(MethodListenerWrapper.java:78) at org.vaadin.spring.events.internal.ListenerCollection.publish(ListenerCollection.java:167) at org.vaadin.spring.events.internal.ScopedEventBus.publish(ScopedEventBus.java:116) at org.vaadin.spring.events.internal.ScopedEventBus.publish(ScopedEventBus.java:109) at eu.etaxonomy.vaadin.mvp.AbstractPopupEditor.replaceComponent(AbstractPopupEditor.java:928) at eu.etaxonomy.cdm.vaadin.view.name.TaxonNamePopupEditor.updateFieldVisibility(TaxonNamePopupEditor.java:730) at eu.etaxonomy.cdm.vaadin.view.name.TaxonNamePopupEditor.updateAuthorshipFields(TaxonNamePopupEditor.java:628) at eu.etaxonomy.cdm.vaadin.view.name.TaxonNamePopupEditor.afterItemDataSourceSet(TaxonNamePopupEditor.java:556) at eu.etaxonomy.vaadin.mvp.AbstractPopupEditor.loadInEditor(AbstractPopupEditor.java:812) at eu.etaxonomy.cdm.vaadin.view.registration.RegistrationWorkingsetPresenter.onTaxonNameEditorActionEdit(RegistrationWorkingsetPresenter.java:435) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at org.vaadin.spring.events.internal.MethodListenerWrapper.publish(MethodListenerWrapper.java:78) at org.vaadin.spring.events.internal.ListenerCollection.publish(ListenerCollection.java:167) at org.vaadin.spring.events.internal.ScopedEventBus.publish(ScopedEventBus.java:116) at org.vaadin.spring.events.internal.ScopedEventBus.publish(ScopedEventBus.java:109) at eu.etaxonomy.cdm.vaadin.view.registration.RegistrationWorksetViewBean.lambda$putRegistrationListComponent$e83e5a40$1(RegistrationWorksetViewBean.java:354) at sun.reflect.GeneratedMethodAccessor1663.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at com.vaadin.event.ListenerMethod.receiveEvent(ListenerMethod.java:510) at com.vaadin.event.EventRouter.fireEvent(EventRouter.java:200) at com.vaadin.event.EventRouter.fireEvent(EventRouter.java:163) at com.vaadin.server.AbstractClientConnector.fireEvent(AbstractClientConnector.java:1015) at com.vaadin.ui.Button.fireClick(Button.java:377) at com.vaadin.ui.Button$1.click(Button.java:54) at sun.reflect.GeneratedMethodAccessor1662.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at com.vaadin.server.ServerRpcManager.applyInvocation(ServerRpcManager.java:158) at com.vaadin.server.ServerRpcManager.applyInvocation(ServerRpcManager.java:119) at com.vaadin.server.communication.ServerRpcHandler.handleInvocation(ServerRpcHandler.java:437) at com.vaadin.server.communication.ServerRpcHandler.handleInvocations(ServerRpcHandler.java:402) at com.vaadin.server.communication.ServerRpcHandler.handleRpc(ServerRpcHandler.java:273) at com.vaadin.server.communication.UidlRequestHandler.synchronizedHandleRequest(UidlRequestHandler.java:90) at com.vaadin.server.SynchronizedRequestHandler.handleRequest(SynchronizedRequestHandler.java:41) at com.vaadin.server.VaadinService.handleRequest(VaadinService.java:1435) at com.vaadin.server.VaadinServlet.service(VaadinServlet.java:380) at javax.servlet.http.HttpServlet.service(HttpServlet.java:790) at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:808) at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1669) at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:316) at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java:126) at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.doFilter(FilterSecurityInterceptor.java:90) at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330) at org.springframework.security.web.access.ExceptionTranslationFilter.doFilter(ExceptionTranslationFilter.java:114) at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330) at org.springframework.security.web.session.SessionManagementFilter.doFilter(SessionManagementFilter.java:122) at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330) at org.springframework.security.web.authentication.AnonymousAuthenticationFilter.doFilter(AnonymousAuthenticationFilter.java:111) at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330) at org.springframework.security.web.servletapi.SecurityContextHolderAwareRequestFilter.doFilter(SecurityContextHolderAwareRequestFilter.java:169) at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330) at org.springframework.security.web.savedrequest.RequestCacheAwareFilter.doFilter(RequestCacheAwareFilter.java:48) at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330) at org.springframework.security.web.authentication.www.BasicAuthenticationFilter.doFilterInternal(BasicAuthenticationFilter.java:158) at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107) at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330) at org.springframework.security.oauth2.provider.authentication.OAuth2AuthenticationProcessingFilter.doFilter(OAuth2AuthenticationProcessingFilter.java:176) at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330) at org.springframework.security.web.authentication.logout.LogoutFilter.doFilter(LogoutFilter.java:120) at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330) at org.springframework.security.web.header.HeaderWriterFilter.doFilterInternal(HeaderWriterFilter.java:64) at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107) at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330) at org.springframework.security.web.context.SecurityContextPersistenceFilter.doFilter(SecurityContextPersistenceFilter.java:91) at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330) at org.springframework.security.web.context.request.async.WebAsyncManagerIntegrationFilter.doFilterInternal(WebAsyncManagerIntegrationFilter.java:53) at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107) at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330) at org.springframework.security.web.FilterChainProxy.doFilterInternal(FilterChainProxy.java:213) at org.springframework.security.web.FilterChainProxy.doFilter(FilterChainProxy.java:176) at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:346) at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:262) at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1652) at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:121) at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107) at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1652) at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:585) at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143) at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:577) at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:223) at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1127) at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:515) at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:185) at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1061) at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141) at org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:215) at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:97) at org.eclipse.jetty.server.Server.handle(Server.java:497) at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:310) at org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:257) at org.eclipse.jetty.io.AbstractConnection$2.run(AbstractConnection.java:540) at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:635) at org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:555) at java.lang.Thread.run(Thread.java:748)
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