Actions
bug #7945
closedTaxonNamePopupEditor: missing genus causes exception when updating name parts visibility
Start date:
Due date:
% Done:
0%
Estimated time:
Severity:
normal
Found in Version:
Description
Incomplete data (missing genus) can result in exceptions being thrown:
org.hibernate.HibernateException: A collection with cascade="all-delete-orphan" was no longer referenced by the owning entity instance: eu.etaxonomy.cdm.model.common.DefinedTermBase.representations
at org.hibernate.engine.internal.Collections.processDereferencedCollection(Collections.java:99)
at org.hibernate.engine.internal.Collections.processUnreachableCollection(Collections.java:50)
at org.hibernate.event.internal.AbstractFlushingEventListener.flushCollections(AbstractFlushingEventListener.java:243)
at org.hibernate.event.internal.AbstractFlushingEventListener.flushEverythingToExecutions(AbstractFlushingEventListener.java:86)
at org.hibernate.event.internal.DefaultAutoFlushEventListener.onAutoFlush(DefaultAutoFlushEventListener.java:44)
at org.hibernate.internal.SessionImpl.autoFlushIfRequired(SessionImpl.java:1251)
at org.hibernate.internal.SessionImpl.list(SessionImpl.java:1319)
at org.hibernate.internal.QueryImpl.list(QueryImpl.java:87)
at org.hibernate.internal.AbstractQueryImpl.uniqueResult(AbstractQueryImpl.java:960)
at eu.etaxonomy.cdm.persistence.dao.hibernate.name.TaxonNameDaoHibernateImpl.countTaxonNameParts(TaxonNameDaoHibernateImpl.java:997)
at eu.etaxonomy.cdm.api.service.NameServiceImpl.findTaxonNameParts(NameServiceImpl.java:354)
at eu.etaxonomy.cdm.api.service.NameServiceImpl.findTaxonNameParts(NameServiceImpl.java:375)
at sun.reflect.GeneratedMethodAccessor1781.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:302)
at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:281)
at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)
at com.sun.proxy.$Proxy611.findTaxonNameParts(Unknown Source)
at eu.etaxonomy.cdm.service.TaxonNameStringFilterablePagingProvider.size(TaxonNameStringFilterablePagingProvider.java:196)
at org.vaadin.viritin.fields.LazyComboBox$7.size(LazyComboBox.java:261)
at org.vaadin.viritin.LazyList.size(LazyList.java:229)
at org.vaadin.viritin.LazyList$1.<init>(LazyList.java:302)
at org.vaadin.viritin.LazyList.iterator(LazyList.java:299)
at java.util.AbstractCollection.contains(AbstractCollection.java:99)
at org.vaadin.viritin.LazyList.contains(LazyList.java:284)
at eu.etaxonomy.vaadin.component.WeaklyRelatedEntityCombobox.setValue(WeaklyRelatedEntityCombobox.java:199)
at eu.etaxonomy.cdm.vaadin.view.name.TaxonNameEditorPresenter.onFieldReplaceEvent(TaxonNameEditorPresenter.java:379)
at sun.reflect.GeneratedMethodAccessor1906.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.vaadin.spring.events.internal.MethodListenerWrapper.publish(MethodListenerWrapper.java:78)
at org.vaadin.spring.events.internal.ListenerCollection.publish(ListenerCollection.java:167)
at org.vaadin.spring.events.internal.ScopedEventBus.publish(ScopedEventBus.java:116)
at org.vaadin.spring.events.internal.ScopedEventBus.publish(ScopedEventBus.java:109)
at eu.etaxonomy.vaadin.mvp.AbstractPopupEditor.replaceComponent(AbstractPopupEditor.java:928)
at eu.etaxonomy.cdm.vaadin.view.name.TaxonNamePopupEditor.updateFieldVisibility(TaxonNamePopupEditor.java:730)
at eu.etaxonomy.cdm.vaadin.view.name.TaxonNamePopupEditor.updateAuthorshipFields(TaxonNamePopupEditor.java:628)
at eu.etaxonomy.cdm.vaadin.view.name.TaxonNamePopupEditor.afterItemDataSourceSet(TaxonNamePopupEditor.java:556)
at eu.etaxonomy.vaadin.mvp.AbstractPopupEditor.loadInEditor(AbstractPopupEditor.java:812)
at eu.etaxonomy.cdm.vaadin.view.registration.RegistrationWorkingsetPresenter.onTaxonNameEditorActionEdit(RegistrationWorkingsetPresenter.java:435)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.vaadin.spring.events.internal.MethodListenerWrapper.publish(MethodListenerWrapper.java:78)
at org.vaadin.spring.events.internal.ListenerCollection.publish(ListenerCollection.java:167)
at org.vaadin.spring.events.internal.ScopedEventBus.publish(ScopedEventBus.java:116)
at org.vaadin.spring.events.internal.ScopedEventBus.publish(ScopedEventBus.java:109)
at eu.etaxonomy.cdm.vaadin.view.registration.RegistrationWorksetViewBean.lambda$putRegistrationListComponent$e83e5a40$1(RegistrationWorksetViewBean.java:354)
at sun.reflect.GeneratedMethodAccessor1663.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at com.vaadin.event.ListenerMethod.receiveEvent(ListenerMethod.java:510)
at com.vaadin.event.EventRouter.fireEvent(EventRouter.java:200)
at com.vaadin.event.EventRouter.fireEvent(EventRouter.java:163)
at com.vaadin.server.AbstractClientConnector.fireEvent(AbstractClientConnector.java:1015)
at com.vaadin.ui.Button.fireClick(Button.java:377)
at com.vaadin.ui.Button$1.click(Button.java:54)
at sun.reflect.GeneratedMethodAccessor1662.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at com.vaadin.server.ServerRpcManager.applyInvocation(ServerRpcManager.java:158)
at com.vaadin.server.ServerRpcManager.applyInvocation(ServerRpcManager.java:119)
at com.vaadin.server.communication.ServerRpcHandler.handleInvocation(ServerRpcHandler.java:437)
at com.vaadin.server.communication.ServerRpcHandler.handleInvocations(ServerRpcHandler.java:402)
at com.vaadin.server.communication.ServerRpcHandler.handleRpc(ServerRpcHandler.java:273)
at com.vaadin.server.communication.UidlRequestHandler.synchronizedHandleRequest(UidlRequestHandler.java:90)
at com.vaadin.server.SynchronizedRequestHandler.handleRequest(SynchronizedRequestHandler.java:41)
at com.vaadin.server.VaadinService.handleRequest(VaadinService.java:1435)
at com.vaadin.server.VaadinServlet.service(VaadinServlet.java:380)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:790)
at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:808)
at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1669)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:316)
at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java:126)
at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.doFilter(FilterSecurityInterceptor.java:90)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
at org.springframework.security.web.access.ExceptionTranslationFilter.doFilter(ExceptionTranslationFilter.java:114)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
at org.springframework.security.web.session.SessionManagementFilter.doFilter(SessionManagementFilter.java:122)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
at org.springframework.security.web.authentication.AnonymousAuthenticationFilter.doFilter(AnonymousAuthenticationFilter.java:111)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
at org.springframework.security.web.servletapi.SecurityContextHolderAwareRequestFilter.doFilter(SecurityContextHolderAwareRequestFilter.java:169)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
at org.springframework.security.web.savedrequest.RequestCacheAwareFilter.doFilter(RequestCacheAwareFilter.java:48)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
at org.springframework.security.web.authentication.www.BasicAuthenticationFilter.doFilterInternal(BasicAuthenticationFilter.java:158)
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
at org.springframework.security.oauth2.provider.authentication.OAuth2AuthenticationProcessingFilter.doFilter(OAuth2AuthenticationProcessingFilter.java:176)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
at org.springframework.security.web.authentication.logout.LogoutFilter.doFilter(LogoutFilter.java:120)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
at org.springframework.security.web.header.HeaderWriterFilter.doFilterInternal(HeaderWriterFilter.java:64)
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
at org.springframework.security.web.context.SecurityContextPersistenceFilter.doFilter(SecurityContextPersistenceFilter.java:91)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
at org.springframework.security.web.context.request.async.WebAsyncManagerIntegrationFilter.doFilterInternal(WebAsyncManagerIntegrationFilter.java:53)
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
at org.springframework.security.web.FilterChainProxy.doFilterInternal(FilterChainProxy.java:213)
at org.springframework.security.web.FilterChainProxy.doFilter(FilterChainProxy.java:176)
at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:346)
at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:262)
at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1652)
at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:121)
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1652)
at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:585)
at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)
at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:577)
at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:223)
at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1127)
at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:515)
at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:185)
at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1061)
at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
at org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:215)
at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:97)
at org.eclipse.jetty.server.Server.handle(Server.java:497)
at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:310)
at org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:257)
at org.eclipse.jetty.io.AbstractConnection$2.run(AbstractConnection.java:540)
at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:635)
at org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:555)
at java.lang.Thread.run(Thread.java:748)
Related issues
Updated by Andreas Kohlbecker over 5 years ago
- Tags set to phycobank
- Subject changed from TaxonNamePopupEditor: missing genus causes exception when updating name parts vi to TaxonNamePopupEditor: missing genus causes exception when updating name parts visibility
- Category set to cdm-vaadin
- Priority changed from New to Highest
- Target version changed from Unassigned CDM tickets to Release 5.5
Updated by Andreas Kohlbecker over 5 years ago
- Related to bug #7944: TaxonNamePopEditor: name part fields are required added
Updated by Andreas Kohlbecker over 5 years ago
- Assignee set to Andreas Kohlbecker
Updated by Andreas Kohlbecker over 5 years ago
- Target version changed from Release 5.5 to Release 5.6
This error can not be reproduced by saving a variety taxon name with blank genus. So the problem that causes the exception to be raced must have been caused by something else. Most probably this has something to to with an un-clean session.
Updated by Andreas Kohlbecker over 5 years ago
- Priority changed from Highest to Priority13
Updated by Andreas Kohlbecker about 5 years ago
- Related to bug #8075: multiple cascade all-delete-orphan exceptions related to DefinedTermBase.representations added
Updated by Andreas Kohlbecker about 5 years ago
- Target version changed from Release 5.6 to Vaadin Taxon Concept Editor
Updated by Andreas Kohlbecker about 5 years ago
- Target version changed from Vaadin Taxon Concept Editor to Reviewed Next Major Release
Updated by Andreas Müller about 5 years ago
- Priority changed from Priority13 to Priority10
Updated by Andreas Kohlbecker about 5 years ago
- Priority changed from Priority10 to Priority13
Updated by Andreas Kohlbecker about 5 years ago
- Priority changed from Priority13 to Highest
- Target version changed from Reviewed Next Major Release to Release 5.6
potentially duplicate of #8161
Updated by Andreas Kohlbecker about 5 years ago
- Is duplicate of bug #8161: *FilterablePagingProvider classes as transactional readonly spring beans added
Updated by Andreas Kohlbecker about 5 years ago
- Status changed from New to Rejected
the *FilterablePagingProviders only are using service methods which are anyway annotated with @Transactional(readOnly=true), therefore it makes not much sense managing transactions in the *FilterablePagingProvider classes. - rejecting ticket
Updated by Andreas Müller about 5 years ago
- Target version deleted (
Release 5.6)
Actions