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task #7192

open

DwC-A of phycobank names for GBIF

Added by Andreas Kohlbecker about 6 years ago. Updated 12 months ago.

Status:
Feedback
Priority:
Highest
Category:
data
Start date:
Due date:
% Done:

40%

Estimated time:
Severity:
normal
Tags:

Description

The below request URI triggers the export with following settings:

  • doMisapplieds=false
  • doSynonyms=true
  • doImages=false
  • doDescriptions=false
  • doDistributions=false
  • doVernaculars=false
  • doTypesAndSpecimen=true
  • doResourceRelations=true
  • doReferences=true
  • withHigherClassification=true
  • includeHeader=true

http://test.e-taxonomy.eu:80/cdmserver/phycobank/dwca/dwcaTaxExport?doMisapplieds=false&doSynonyms=true&doImages=false&doDescriptions=false&doDistributions=false&doVernaculars=false&doTypesAndSpecimen=true&doResourceRelations=true&doReferences=true&withHigherClassification=true&includeHeader=true


Related issues

Related to EDIT - bug #7161: DwC-A meta.xml file csv file references invalidClosedKatja Luther

Actions
Related to EDIT - bug #7175: DwC-A export optionally filters by published flagClosedKatja Luther

Actions
Related to EDIT - bug #7160: DwC-A meta.xml file has wrong file extensionClosedKatja Luther

Actions
Actions #1

Updated by Andreas Kohlbecker about 6 years ago

  • Description updated (diff)
Actions #2

Updated by Andreas Kohlbecker about 6 years ago

  • Description updated (diff)
Actions #4

Updated by Andreas Kohlbecker about 6 years ago

  • Related to bug #7161: DwC-A meta.xml file csv file references invalid added
Actions #5

Updated by Andreas Kohlbecker about 6 years ago

  • Related to bug #7175: DwC-A export optionally filters by published flag added
Actions #6

Updated by Andreas Kohlbecker about 6 years ago

  • Related to bug #7160: DwC-A meta.xml file has wrong file extension added
Actions #7

Updated by Andreas Kohlbecker about 6 years ago

  • Description updated (diff)
Actions #8

Updated by Andreas Kohlbecker about 6 years ago

The export looks ok, but produces the following warnings on data problems

Warnings:
=========
No rank available for Laurencia subgen. Chondrophycus Tokida & Y.Saito(1166)[handleTaxonBase(eu.etaxonomy.cdm.io.dwca.out.DwcaTaxonExport:243)]
No rank available for Cymbella subgen. Cymbopleura Krammer(1242)[handleTaxonBase(eu.etaxonomy.cdm.io.dwca.out.DwcaTaxonExport:243)]
No rank available for Chaetoceros sch?ttii var. circinalis Meunier(727)[handleTaxonBase(eu.etaxonomy.cdm.io.dwca.out.DwcaTaxonExport:243)]
No rank available for Desmidiales s.l.(1833)[handleTaxonBase(eu.etaxonomy.cdm.io.dwca.out.DwcaTaxonExport:243)]
No rank available for Bacillariophyta, incertae sedis(2023)[handleTaxonBase(eu.etaxonomy.cdm.io.dwca.out.DwcaTaxonExport:243)]
No rank available for Chlorophyta, incertae sedis(2026)[handleTaxonBase(eu.etaxonomy.cdm.io.dwca.out.DwcaTaxonExport:243)]
There is a taxon without sec Micrhystridium Deflandre sec. ???(1964)[handleTaxonBase(eu.etaxonomy.cdm.io.dwca.out.DwcaTaxonExport:200)]
There is a taxon without sec Meredithia compaginata G.W.Saunders sec. ???(2158)[handleTaxonBase(eu.etaxonomy.cdm.io.dwca.out.DwcaTaxonExport:200)]

@Henning: Please can you fix these problems in the data if possible?

Actions #9

Updated by Andreas Kohlbecker about 6 years ago

  • Status changed from New to Feedback
  • Assignee changed from Andreas Kohlbecker to Wolf-Henning Kusber
  • Priority changed from New to Highest
Actions #10

Updated by Andreas Kohlbecker about 6 years ago

  • % Done changed from 0 to 40
Actions #11

Updated by Andreas Müller about 1 year ago

  • Tags set to phycobank
  • Project changed from PhycoBank to EDIT
  • Category set to data
  • Target version set to Phycobank ready for submitters
  • Severity set to normal

Do these data issues still need to be fixed?

Actions #12

Updated by Andreas Müller 12 months ago

The above issues seem to be fixed. The error report does not include any issues.

However, there are currently 6132 entries in coreTax which seems to be too large.

Actions

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