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bug #6668
closedNPE in DetailsView when deleting a type specimen
Start date:
Due date:
% Done:
50%
Estimated time:
Severity:
major
Found in Version:
Description
- Create a type specimen for a taxon
- Delete the specimen in the specimen hierarchy editor
- switch back to the taxon name editor This even happens after a reconnect
login : admin
editor version : 4.8.0.qualifier
server : localhost (localhost-dev)
schema version : 4.1.0.0.201607300000
os : Linux 4.4.0-53-generic amd64
java : 1.8.0_121
java.lang.NullPointerException: CDM Entity of type eu.etaxonomy.cdm.model.occurrence.DerivedUnit with id 31 is null.
at eu.etaxonomy.taxeditor.service.CachedCommonServiceImpl.find(CachedCommonServiceImpl.java:47)
at org.hibernate.proxy.AbstractLazyInitializer.remoteInitialize(AbstractLazyInitializer.java:451)
at org.hibernate.proxy.AbstractLazyInitializer.initialize(AbstractLazyInitializer.java:167)
at org.hibernate.proxy.AbstractLazyInitializer.getImplementation(AbstractLazyInitializer.java:297)
at org.hibernate.proxy.pojo.javassist.JavassistLazyInitializer.invoke(JavassistLazyInitializer.java:68)
at eu.etaxonomy.cdm.model.occurrence.DerivedUnit_$$_jvst5cb_c.equals(DerivedUnit_$$_jvst5cb_c.java)
at eu.etaxonomy.taxeditor.ui.element.SelectionArbitrator.selectionChanged(SelectionArbitrator.java:149)
at org.eclipse.jface.viewers.Viewer$1.run(Viewer.java:158)
at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42)
at org.eclipse.ui.internal.JFaceUtil$1.run(JFaceUtil.java:50)
at org.eclipse.jface.util.SafeRunnable.run(SafeRunnable.java:173)
at org.eclipse.jface.viewers.Viewer.fireSelectionChanged(Viewer.java:155)
at eu.etaxonomy.taxeditor.view.detail.DetailsViewer.setSelection(DetailsViewer.java:356)
at org.eclipse.jface.viewers.Viewer.setSelection(Viewer.java:383)
at eu.etaxonomy.taxeditor.view.AbstractCdmDataViewer.setInput(AbstractCdmDataViewer.java:108)
at eu.etaxonomy.taxeditor.view.detail.DetailsViewer.setInput(DetailsViewer.java:161)
at eu.etaxonomy.taxeditor.view.AbstractCdmViewPart.showViewer(AbstractCdmViewPart.java:118)
at eu.etaxonomy.taxeditor.view.detail.DetailsViewPart.selectionChanged_internal(DetailsViewPart.java:95)
at eu.etaxonomy.taxeditor.view.AbstractCdmEditorViewPart$DelaySelection.run(AbstractCdmEditorViewPart.java:52)
at org.eclipse.swt.widgets.RunnableLock.run(RunnableLock.java:35)
at org.eclipse.swt.widgets.Synchronizer.runAsyncMessages(Synchronizer.java:182)
at org.eclipse.swt.widgets.Display.runAsyncMessages(Display.java:4536)
at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:4154)
at org.eclipse.jface.window.Window.runEventLoop(Window.java:818)
at org.eclipse.jface.window.Window.open(Window.java:794)
at org.eclipse.jface.dialogs.ErrorDialog.open(ErrorDialog.java:346)
at eu.etaxonomy.taxeditor.model.MessagingUtils$1.run(MessagingUtils.java:279)
at org.eclipse.swt.widgets.RunnableLock.run(RunnableLock.java:35)
at org.eclipse.swt.widgets.Synchronizer.runAsyncMessages(Synchronizer.java:182)
at org.eclipse.swt.widgets.Display.runAsyncMessages(Display.java:4536)
at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:4154)
at org.eclipse.jface.window.Window.runEventLoop(Window.java:818)
at org.eclipse.jface.window.Window.open(Window.java:794)
at org.eclipse.jface.dialogs.ErrorDialog.open(ErrorDialog.java:346)
at eu.etaxonomy.taxeditor.model.MessagingUtils$1.run(MessagingUtils.java:279)
at org.eclipse.swt.widgets.RunnableLock.run(RunnableLock.java:35)
at org.eclipse.swt.widgets.Synchronizer.runAsyncMessages(Synchronizer.java:182)
at org.eclipse.swt.widgets.Display.runAsyncMessages(Display.java:4536)
at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:4154)
at org.eclipse.jface.window.Window.runEventLoop(Window.java:818)
at org.eclipse.jface.window.Window.open(Window.java:794)
at org.eclipse.jface.dialogs.ErrorDialog.open(ErrorDialog.java:346)
at eu.etaxonomy.taxeditor.model.MessagingUtils$1.run(MessagingUtils.java:279)
at org.eclipse.swt.widgets.RunnableLock.run(RunnableLock.java:35)
at org.eclipse.swt.widgets.Synchronizer.runAsyncMessages(Synchronizer.java:182)
at org.eclipse.swt.widgets.Display.runAsyncMessages(Display.java:4536)
at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:4154)
at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine$4.run(PartRenderingEngine.java:1121)
at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:336)
at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine.run(PartRenderingEngine.java:1022)
at org.eclipse.e4.ui.internal.workbench.E4Workbench.createAndRunUI(E4Workbench.java:150)
at org.eclipse.ui.internal.Workbench$5.run(Workbench.java:693)
at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:336)
at org.eclipse.ui.internal.Workbench.createAndRunWorkbench(Workbench.java:610)
at org.eclipse.ui.PlatformUI.createAndRunWorkbench(PlatformUI.java:148)
at eu.etaxonomy.taxeditor.Application.start(Application.java:24)
at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:134)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:388)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:243)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:673)
at org.eclipse.equinox.launcher.Main.basicRun(Main.java:610)
at org.eclipse.equinox.launcher.Main.run(Main.java:1519)
at org.eclipse.equinox.launcher.Main.main(Main.java:1492)
Related issues
Updated by Andreas Müller over 5 years ago
- Priority changed from New to Highest
- Target version changed from Unassigned CDM tickets to Release 4.8
Updated by Katja Luther over 5 years ago
I can't reproduce it in this way. If the type specimen is deleted in specimen editor and the name editor is already open, the name editor is not refreshed and the type designation is still there. But if you close the name editor and reopen it, the type designation is gone and no exception.
when clicking on the edit-button of the specimen following exception appears:
!ENTRY org.eclipse.ui 4 0 2017-06-21 11:49:04.669
!MESSAGE This is an unexpected error.
Please contact EDIT Support (EditSupport@bgbm.org) with the error trace below (click on the 'Details' button).
!STACK 0
java.lang.Exception: login : admin
editor version : 4.8.0.qualifier
server : localhost (localhost-dev)
schema version : 4.7.0.0.201710040000
os : Windows 7 6.1 amd64
java : 1.8.0_121
java.lang.NullPointerException
at eu.etaxonomy.taxeditor.ui.selection.EditFromSelectionWizard.addPages(EditFromSelectionWizard.java:101)
at org.eclipse.jface.wizard.WizardDialog.createContents(WizardDialog.java:585)
at org.eclipse.jface.window.Window.create(Window.java:426)
at org.eclipse.jface.dialogs.Dialog.create(Dialog.java:1095)
at org.eclipse.jface.window.Window.open(Window.java:783)
at eu.etaxonomy.taxeditor.ui.selection.EntitySelectionElement$EditListener.widgetSelected(EntitySelectionElement.java:434)
at org.eclipse.swt.widgets.TypedListener.handleEvent(TypedListener.java:249)
at org.eclipse.swt.widgets.EventTable.sendEvent(EventTable.java:84)
at org.eclipse.swt.widgets.Display.sendEvent(Display.java:4418)
at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1079)
at org.eclipse.swt.widgets.Display.runDeferredEvents(Display.java:4236)
at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:3824)
at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine$4.run(PartRenderingEngine.java:1121)
at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:336)
at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine.run(PartRenderingEngine.java:1022)
at org.eclipse.e4.ui.internal.workbench.E4Workbench.createAndRunUI(E4Workbench.java:150)
at org.eclipse.ui.internal.Workbench$5.run(Workbench.java:693)
at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:336)
at org.eclipse.ui.internal.Workbench.createAndRunWorkbench(Workbench.java:610)
at org.eclipse.ui.PlatformUI.createAndRunWorkbench(PlatformUI.java:148)
at eu.etaxonomy.taxeditor.Application.start(Application.java:24)
at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:134)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:388)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:243)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.lang.reflect.Method.invoke(Unknown Source)
at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:673)
at org.eclipse.equinox.launcher.Main.basicRun(Main.java:610)
at org.eclipse.equinox.launcher.Main.run(Main.java:1519)
at org.eclipse.equinox.launcher.Main.main(Main.java:1492)
at eu.etaxonomy.taxeditor.model.MessagingUtils$1.run(MessagingUtils.java:286)
at org.eclipse.swt.widgets.RunnableLock.run(RunnableLock.java:35)
at org.eclipse.swt.widgets.Synchronizer.runAsyncMessages(Synchronizer.java:182)
at org.eclipse.swt.widgets.Display.runAsyncMessages(Display.java:4211)
at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:3827)
at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine$4.run(PartRenderingEngine.java:1121)
at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:336)
at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine.run(PartRenderingEngine.java:1022)
at org.eclipse.e4.ui.internal.workbench.E4Workbench.createAndRunUI(E4Workbench.java:150)
at org.eclipse.ui.internal.Workbench$5.run(Workbench.java:693)
at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:336)
at org.eclipse.ui.internal.Workbench.createAndRunWorkbench(Workbench.java:610)
at org.eclipse.ui.PlatformUI.createAndRunWorkbench(PlatformUI.java:148)
at eu.etaxonomy.taxeditor.Application.start(Application.java:24)
at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:134)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:388)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:243)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.lang.reflect.Method.invoke(Unknown Source)
at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:673)
at org.eclipse.equinox.launcher.Main.basicRun(Main.java:610)
at org.eclipse.equinox.launcher.Main.run(Main.java:1519)
at org.eclipse.equinox.launcher.Main.main(Main.java:1492)
Updated by Patrick Plitzner over 5 years ago
- Target version changed from Release 4.8 to Release 4.9
Updated by Andreas Müller over 5 years ago
- Target version changed from Release 4.9 to Release 4.10
Updated by Andreas Müller over 5 years ago
- Target version changed from Release 4.10 to Release 4.11
Updated by Andreas Müller over 5 years ago
- Target version changed from Release 4.11 to Release 4.12
Updated by Andreas Müller about 5 years ago
- Target version changed from Release 4.12 to Release 4.13
Updated by Andreas Müller about 5 years ago
- Target version changed from Release 4.13 to Release 4.14
Updated by Andreas Müller almost 5 years ago
- Target version changed from Release 4.14 to Release 5.0
Updated by Patrick Plitzner almost 5 years ago
- Status changed from New to Resolved
- Assignee changed from Patrick Plitzner to Katja Luther
- % Done changed from 0 to 50
Updated by Katja Luther almost 5 years ago
- Status changed from Resolved to Closed
it works, but we have to refresh the name editor otherwise the NPE of note-3 appears. Maybe we should open a new ticket, because this is a refresh problem. see #7301
Updated by Katja Luther almost 5 years ago
- Copied to feature request #7301: Refresh open name editors when deleting specimen used in type designation added
Updated by Katja Luther almost 5 years ago
- Assignee changed from Katja Luther to Patrick Plitzner
Katja Luther wrote:
it works, but we have to refresh the name editor otherwise the NPE of note-3 appears. Maybe we should open a new ticket, because this is a refresh problem. see #7301
sorry, it works. Maybe my workspace was not updated.
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