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bug #6668

NPE in DetailsView when deleting a type specimen

Added by Patrick Plitzner over 1 year ago. Updated 12 months ago.

Status:
Closed
Priority:
Highest
Assignee:
Patrick Plitzner
Category:
taxeditor
Target version:
Release 5.0
Start date:
05/22/2017
Due date:
% Done:

50%

Severity:
major
Found in Version:
Release 4.8

Description

  1. Create a type specimen for a taxon
  2. Delete the specimen in the specimen hierarchy editor
  3. switch back to the taxon name editor This even happens after a reconnect
login : admin
editor version : 4.8.0.qualifier
server : localhost (localhost-dev)
schema version : 4.1.0.0.201607300000
os : Linux 4.4.0-53-generic amd64
java : 1.8.0_121
java.lang.NullPointerException: CDM Entity of type eu.etaxonomy.cdm.model.occurrence.DerivedUnit with id 31 is null.
    at eu.etaxonomy.taxeditor.service.CachedCommonServiceImpl.find(CachedCommonServiceImpl.java:47)
    at org.hibernate.proxy.AbstractLazyInitializer.remoteInitialize(AbstractLazyInitializer.java:451)
    at org.hibernate.proxy.AbstractLazyInitializer.initialize(AbstractLazyInitializer.java:167)
    at org.hibernate.proxy.AbstractLazyInitializer.getImplementation(AbstractLazyInitializer.java:297)
    at org.hibernate.proxy.pojo.javassist.JavassistLazyInitializer.invoke(JavassistLazyInitializer.java:68)
    at eu.etaxonomy.cdm.model.occurrence.DerivedUnit_$$_jvst5cb_c.equals(DerivedUnit_$$_jvst5cb_c.java)
    at eu.etaxonomy.taxeditor.ui.element.SelectionArbitrator.selectionChanged(SelectionArbitrator.java:149)
    at org.eclipse.jface.viewers.Viewer$1.run(Viewer.java:158)
    at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42)
    at org.eclipse.ui.internal.JFaceUtil$1.run(JFaceUtil.java:50)
    at org.eclipse.jface.util.SafeRunnable.run(SafeRunnable.java:173)
    at org.eclipse.jface.viewers.Viewer.fireSelectionChanged(Viewer.java:155)
    at eu.etaxonomy.taxeditor.view.detail.DetailsViewer.setSelection(DetailsViewer.java:356)
    at org.eclipse.jface.viewers.Viewer.setSelection(Viewer.java:383)
    at eu.etaxonomy.taxeditor.view.AbstractCdmDataViewer.setInput(AbstractCdmDataViewer.java:108)
    at eu.etaxonomy.taxeditor.view.detail.DetailsViewer.setInput(DetailsViewer.java:161)
    at eu.etaxonomy.taxeditor.view.AbstractCdmViewPart.showViewer(AbstractCdmViewPart.java:118)
    at eu.etaxonomy.taxeditor.view.detail.DetailsViewPart.selectionChanged_internal(DetailsViewPart.java:95)
    at eu.etaxonomy.taxeditor.view.AbstractCdmEditorViewPart$DelaySelection.run(AbstractCdmEditorViewPart.java:52)
    at org.eclipse.swt.widgets.RunnableLock.run(RunnableLock.java:35)
    at org.eclipse.swt.widgets.Synchronizer.runAsyncMessages(Synchronizer.java:182)
    at org.eclipse.swt.widgets.Display.runAsyncMessages(Display.java:4536)
    at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:4154)
    at org.eclipse.jface.window.Window.runEventLoop(Window.java:818)
    at org.eclipse.jface.window.Window.open(Window.java:794)
    at org.eclipse.jface.dialogs.ErrorDialog.open(ErrorDialog.java:346)
    at eu.etaxonomy.taxeditor.model.MessagingUtils$1.run(MessagingUtils.java:279)
    at org.eclipse.swt.widgets.RunnableLock.run(RunnableLock.java:35)
    at org.eclipse.swt.widgets.Synchronizer.runAsyncMessages(Synchronizer.java:182)
    at org.eclipse.swt.widgets.Display.runAsyncMessages(Display.java:4536)
    at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:4154)
    at org.eclipse.jface.window.Window.runEventLoop(Window.java:818)
    at org.eclipse.jface.window.Window.open(Window.java:794)
    at org.eclipse.jface.dialogs.ErrorDialog.open(ErrorDialog.java:346)
    at eu.etaxonomy.taxeditor.model.MessagingUtils$1.run(MessagingUtils.java:279)
    at org.eclipse.swt.widgets.RunnableLock.run(RunnableLock.java:35)
    at org.eclipse.swt.widgets.Synchronizer.runAsyncMessages(Synchronizer.java:182)
    at org.eclipse.swt.widgets.Display.runAsyncMessages(Display.java:4536)
    at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:4154)
    at org.eclipse.jface.window.Window.runEventLoop(Window.java:818)
    at org.eclipse.jface.window.Window.open(Window.java:794)
    at org.eclipse.jface.dialogs.ErrorDialog.open(ErrorDialog.java:346)
    at eu.etaxonomy.taxeditor.model.MessagingUtils$1.run(MessagingUtils.java:279)
    at org.eclipse.swt.widgets.RunnableLock.run(RunnableLock.java:35)
    at org.eclipse.swt.widgets.Synchronizer.runAsyncMessages(Synchronizer.java:182)
    at org.eclipse.swt.widgets.Display.runAsyncMessages(Display.java:4536)
    at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:4154)
    at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine$4.run(PartRenderingEngine.java:1121)
    at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:336)
    at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine.run(PartRenderingEngine.java:1022)
    at org.eclipse.e4.ui.internal.workbench.E4Workbench.createAndRunUI(E4Workbench.java:150)
    at org.eclipse.ui.internal.Workbench$5.run(Workbench.java:693)
    at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:336)
    at org.eclipse.ui.internal.Workbench.createAndRunWorkbench(Workbench.java:610)
    at org.eclipse.ui.PlatformUI.createAndRunWorkbench(PlatformUI.java:148)
    at eu.etaxonomy.taxeditor.Application.start(Application.java:24)
    at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196)
    at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:134)
    at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104)
    at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:388)
    at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:243)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:498)
    at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:673)
    at org.eclipse.equinox.launcher.Main.basicRun(Main.java:610)
    at org.eclipse.equinox.launcher.Main.run(Main.java:1519)
    at org.eclipse.equinox.launcher.Main.main(Main.java:1492)

Related issues

Copied to Edit - feature request #7301: Refresh open name editors when deleting specimen used in type designation Worksforme 03/02/2018

Associated revisions

Revision 159247e6 (diff)
Added by Patrick Plitzner 12 months ago

ref #6668 Update taxon name editor when deleting the type specimen

Revision a797ba42 (diff)
Added by Patrick Plitzner 12 months ago

ref #6668 Evaluate update based on existence of type designation match

Revision bd1626d9 (diff)
Added by Patrick Plitzner 12 months ago

ref #6668 Include deleted derivatives recursively into DeleteResult

Revision c9d662a3 (diff)
Added by Patrick Plitzner 12 months ago

ref #6668 Remove unused method parameter

History

#1 Updated by Andreas Müller over 1 year ago

  • Priority changed from New to Highest
  • Target version changed from Unassigned CDM tickets to Release 4.8

#2 Updated by Andreas Müller over 1 year ago

  • Found in Version set to Release 4.8

#3 Updated by Katja Luther over 1 year ago

I can't reproduce it in this way. If the type specimen is deleted in specimen editor and the name editor is already open, the name editor is not refreshed and the type designation is still there. But if you close the name editor and reopen it, the type designation is gone and no exception.
when clicking on the edit-button of the specimen following exception appears:

!ENTRY org.eclipse.ui 4 0 2017-06-21 11:49:04.669
!MESSAGE This is an unexpected error.
Please contact EDIT Support (EditSupport@bgbm.org) with the error trace below (click on the 'Details' button).
!STACK 0
java.lang.Exception: login : admin
editor version : 4.8.0.qualifier
server : localhost (localhost-dev)
schema version : 4.7.0.0.201710040000
os : Windows 7 6.1 amd64
java : 1.8.0_121
java.lang.NullPointerException
    at eu.etaxonomy.taxeditor.ui.selection.EditFromSelectionWizard.addPages(EditFromSelectionWizard.java:101)
    at org.eclipse.jface.wizard.WizardDialog.createContents(WizardDialog.java:585)
    at org.eclipse.jface.window.Window.create(Window.java:426)
    at org.eclipse.jface.dialogs.Dialog.create(Dialog.java:1095)
    at org.eclipse.jface.window.Window.open(Window.java:783)
    at eu.etaxonomy.taxeditor.ui.selection.EntitySelectionElement$EditListener.widgetSelected(EntitySelectionElement.java:434)
    at org.eclipse.swt.widgets.TypedListener.handleEvent(TypedListener.java:249)
    at org.eclipse.swt.widgets.EventTable.sendEvent(EventTable.java:84)
    at org.eclipse.swt.widgets.Display.sendEvent(Display.java:4418)
    at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1079)
    at org.eclipse.swt.widgets.Display.runDeferredEvents(Display.java:4236)
    at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:3824)
    at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine$4.run(PartRenderingEngine.java:1121)
    at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:336)
    at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine.run(PartRenderingEngine.java:1022)
    at org.eclipse.e4.ui.internal.workbench.E4Workbench.createAndRunUI(E4Workbench.java:150)
    at org.eclipse.ui.internal.Workbench$5.run(Workbench.java:693)
    at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:336)
    at org.eclipse.ui.internal.Workbench.createAndRunWorkbench(Workbench.java:610)
    at org.eclipse.ui.PlatformUI.createAndRunWorkbench(PlatformUI.java:148)
    at eu.etaxonomy.taxeditor.Application.start(Application.java:24)
    at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196)
    at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:134)
    at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104)
    at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:388)
    at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:243)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
    at java.lang.reflect.Method.invoke(Unknown Source)
    at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:673)
    at org.eclipse.equinox.launcher.Main.basicRun(Main.java:610)
    at org.eclipse.equinox.launcher.Main.run(Main.java:1519)
    at org.eclipse.equinox.launcher.Main.main(Main.java:1492)

    at eu.etaxonomy.taxeditor.model.MessagingUtils$1.run(MessagingUtils.java:286)
    at org.eclipse.swt.widgets.RunnableLock.run(RunnableLock.java:35)
    at org.eclipse.swt.widgets.Synchronizer.runAsyncMessages(Synchronizer.java:182)
    at org.eclipse.swt.widgets.Display.runAsyncMessages(Display.java:4211)
    at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:3827)
    at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine$4.run(PartRenderingEngine.java:1121)
    at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:336)
    at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine.run(PartRenderingEngine.java:1022)
    at org.eclipse.e4.ui.internal.workbench.E4Workbench.createAndRunUI(E4Workbench.java:150)
    at org.eclipse.ui.internal.Workbench$5.run(Workbench.java:693)
    at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:336)
    at org.eclipse.ui.internal.Workbench.createAndRunWorkbench(Workbench.java:610)
    at org.eclipse.ui.PlatformUI.createAndRunWorkbench(PlatformUI.java:148)
    at eu.etaxonomy.taxeditor.Application.start(Application.java:24)
    at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196)
    at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:134)
    at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104)
    at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:388)
    at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:243)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
    at java.lang.reflect.Method.invoke(Unknown Source)
    at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:673)
    at org.eclipse.equinox.launcher.Main.basicRun(Main.java:610)
    at org.eclipse.equinox.launcher.Main.run(Main.java:1519)
    at org.eclipse.equinox.launcher.Main.main(Main.java:1492)

#4 Updated by Patrick Plitzner over 1 year ago

  • Target version changed from Release 4.8 to Release 4.9

#5 Updated by Andreas Müller over 1 year ago

  • Target version changed from Release 4.9 to Release 4.10

#6 Updated by Andreas Müller over 1 year ago

  • Target version changed from Release 4.10 to Release 4.11

#7 Updated by Andreas Müller over 1 year ago

  • Target version changed from Release 4.11 to Release 4.12

#8 Updated by Andreas Müller about 1 year ago

  • Target version changed from Release 4.12 to Release 4.13

#9 Updated by Andreas Müller about 1 year ago

  • Target version changed from Release 4.13 to Release 4.14

#10 Updated by Andreas Müller about 1 year ago

  • Target version changed from Release 4.14 to Release 5.0

#11 Updated by Patrick Plitzner 12 months ago

  • Status changed from New to Resolved
  • Assignee changed from Patrick Plitzner to Katja Luther
  • % Done changed from 0 to 50

#12 Updated by Katja Luther 12 months ago

  • Status changed from Resolved to Closed

it works, but we have to refresh the name editor otherwise the NPE of note-3 appears. Maybe we should open a new ticket, because this is a refresh problem. see #7301

#13 Updated by Katja Luther 12 months ago

  • Copied to feature request #7301: Refresh open name editors when deleting specimen used in type designation added

#14 Updated by Katja Luther 12 months ago

  • Assignee changed from Katja Luther to Patrick Plitzner

Katja Luther wrote:

it works, but we have to refresh the name editor otherwise the NPE of note-3 appears. Maybe we should open a new ticket, because this is a refresh problem. see #7301

sorry, it works. Maybe my workspace was not updated.

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