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feature request #6203

open

Implement unplaced and excluded in dataportal

Added by Andreas Müller over 7 years ago. Updated about 5 years ago.

Status:
New
Priority:
Priority13
Category:
cdm-dataportal
Start date:
Due date:
% Done:

0%

Estimated time:
(Total: 0:00 h)
Severity:
major

Description

The unplaced and excluded flags have been moved from Taxon to TaxonNode (#3925). This should be taken in account in dataportal code. DONE

Unplaced taxon nodes should be put to an incertis sedis node in the tree. Excluded nodes should be put to an excluded node in the tree.

I don't know if this already happened for the flag in Taxon class. NOPE!

Also we should mention the state somehow on the taxon page. --> see #6221

see cdm_daaportal.module#cdm_dataportal_shortname_of() DONE

At least for phycobank a special configuration options are needed in the portal:

  • [ ] virtual classification nodes for unplaced and excluded taxa ( default = true, description = "Unplaced taxa are shown at the end of the classification. If this option is activated unplaced taxa will be put into the virtual classification node incertis sedis, excluded taxa in the virtual node excluded. If this option is inactive the taxa flagged as unplaced or excluded are shown as separately ordered set at the end of the siblings list with first unplaced then excluded taxa and internally ordered by rank and alphabet.

Subtasks 1 (1 open0 closed)

bug #6414: use short name for excluded, unplaced taxa when the genus of the parent taxa is differentNewAndreas Kohlbecker

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Related issues

Related to EDIT - feature request #6547: Implement excluded and unplaced in taxon navigatorClosedKatja Luther

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Related to EDIT - bug #9741: cdm_dataportal_shortname_of truncates uninomial with not abbreviated author strings and causes other oddsNewAndreas Kohlbecker

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Precedes EDIT - feature request #3925: Unplaced and excluded to TaxonNodeClosedAndreas Müller

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Copied to EDIT - task #6221: mention the unplaced and excluded states in the taxon pageNewAndreas Kohlbecker

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