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bug #6200

Exception when adding a new synonym (allowOverride)

Added by Patrick Plitzner almost 3 years ago. Updated almost 3 years ago.

Status:
Closed
Priority:
Highest
Category:
taxeditor
Target version:
-
Start date:
11/15/2016
Due date:
% Done:

100%

Severity:
normal
Found in Version:

Description

  1. In any DB press enter in the name editor to create a new synonym
  2. The following error is logged
org.hibernate.PropertyAccessException: Null value was assigned to a property [class eu.etaxonomy.cdm.model.metadata.CdmPreference.allowOverride] of primitive type setter of eu.etaxonomy.cdm.model.metadata.CdmPreference.allowOverride
    at org.hibernate.property.access.spi.SetterFieldImpl.set(SetterFieldImpl.java:44)
    at org.hibernate.tuple.entity.AbstractEntityTuplizer.setPropertyValues(AbstractEntityTuplizer.java:607)
    at org.hibernate.tuple.entity.PojoEntityTuplizer.setPropertyValues(PojoEntityTuplizer.java:220)
    at org.hibernate.persister.entity.AbstractEntityPersister.setPropertyValues(AbstractEntityPersister.java:4573)
    at org.hibernate.engine.internal.TwoPhaseLoad.doInitializeEntity(TwoPhaseLoad.java:172)
    at org.hibernate.engine.internal.TwoPhaseLoad.initializeEntity(TwoPhaseLoad.java:128)
    at org.hibernate.loader.plan.exec.process.internal.AbstractRowReader.performTwoPhaseLoad(AbstractRowReader.java:238)
    at org.hibernate.loader.plan.exec.process.internal.AbstractRowReader.finishUp(AbstractRowReader.java:209)
    at org.hibernate.loader.plan.exec.process.internal.ResultSetProcessorImpl.extractResults(ResultSetProcessorImpl.java:123)
    at org.hibernate.loader.plan.exec.internal.AbstractLoadPlanBasedLoader.executeLoad(AbstractLoadPlanBasedLoader.java:122)
    at org.hibernate.loader.plan.exec.internal.AbstractLoadPlanBasedLoader.executeLoad(AbstractLoadPlanBasedLoader.java:86)
    at org.hibernate.loader.entity.plan.AbstractLoadPlanBasedEntityLoader.load(AbstractLoadPlanBasedEntityLoader.java:167)
    at org.hibernate.persister.entity.AbstractEntityPersister.load(AbstractEntityPersister.java:3956)
    at org.hibernate.event.internal.DefaultLoadEventListener.loadFromDatasource(DefaultLoadEventListener.java:508)
    at org.hibernate.event.internal.DefaultLoadEventListener.doLoad(DefaultLoadEventListener.java:478)
    at org.hibernate.event.internal.DefaultLoadEventListener.load(DefaultLoadEventListener.java:219)
    at org.hibernate.event.internal.DefaultLoadEventListener.proxyOrLoad(DefaultLoadEventListener.java:262)
    at org.hibernate.event.internal.DefaultLoadEventListener.doOnLoad(DefaultLoadEventListener.java:121)
    at org.hibernate.event.internal.DefaultLoadEventListener.onLoad(DefaultLoadEventListener.java:89)
    at org.hibernate.internal.SessionImpl.fireLoad(SessionImpl.java:1129)
    at org.hibernate.internal.SessionImpl.access$2600(SessionImpl.java:164)
    at org.hibernate.internal.SessionImpl$IdentifierLoadAccessImpl.load(SessionImpl.java:2696)
    at org.hibernate.internal.SessionImpl.get(SessionImpl.java:975)
    at eu.etaxonomy.cdm.persistence.dao.hibernate.common.PreferenceDaoImpl.get(PreferenceDaoImpl.java:39)
    at eu.etaxonomy.cdm.api.service.PreferenceServiceImpl.find(PreferenceServiceImpl.java:49)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:606)
    at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:302)
    at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
    at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
    at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
    at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:281)
    at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
    at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
    at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)
    at com.sun.proxy.$Proxy170.find(Unknown Source)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:606)
    at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:302)
    at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
    at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
    at org.springframework.remoting.support.RemoteInvocationTraceInterceptor.invoke(RemoteInvocationTraceInterceptor.java:78)
    at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
    at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)
    at com.sun.proxy.$Proxy252.find(Unknown Source)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:606)
    at org.springframework.remoting.support.RemoteInvocation.invoke(RemoteInvocation.java:212)
    at org.springframework.remoting.support.DefaultRemoteInvocationExecutor.invoke(DefaultRemoteInvocationExecutor.java:39)
    at org.springframework.remoting.support.RemoteInvocationBasedExporter.invoke(RemoteInvocationBasedExporter.java:78)
    at org.springframework.remoting.support.RemoteInvocationBasedExporter.invokeAndCreateResult(RemoteInvocationBasedExporter.java:114)
    at org.springframework.remoting.httpinvoker.HttpInvokerServiceExporter.handleRequest(HttpInvokerServiceExporter.java:74)
    at org.springframework.web.servlet.mvc.HttpRequestHandlerAdapter.handle(HttpRequestHandlerAdapter.java:51)
    at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:959)
    at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:893)
    at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:969)
    at org.springframework.web.servlet.FrameworkServlet.doPost(FrameworkServlet.java:871)
    at javax.servlet.http.HttpServlet.service(HttpServlet.java:727)
    at org.springframework.web.servlet.FrameworkServlet.service(FrameworkServlet.java:845)
    at javax.servlet.http.HttpServlet.service(HttpServlet.java:820)
    at org.mortbay.jetty.servlet.ServletHolder.handle(ServletHolder.java:511)
    at org.mortbay.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1221)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:316)
    at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java:126)
    at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.doFilter(FilterSecurityInterceptor.java:90)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
    at org.springframework.security.web.access.ExceptionTranslationFilter.doFilter(ExceptionTranslationFilter.java:114)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
    at org.springframework.security.web.session.SessionManagementFilter.doFilter(SessionManagementFilter.java:122)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
    at org.springframework.security.web.servletapi.SecurityContextHolderAwareRequestFilter.doFilter(SecurityContextHolderAwareRequestFilter.java:169)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
    at org.springframework.security.web.savedrequest.RequestCacheAwareFilter.doFilter(RequestCacheAwareFilter.java:48)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
    at org.springframework.security.web.authentication.www.BasicAuthenticationFilter.doFilterInternal(BasicAuthenticationFilter.java:213)
    at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
    at org.springframework.security.web.authentication.logout.LogoutFilter.doFilter(LogoutFilter.java:120)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
    at org.springframework.security.web.header.HeaderWriterFilter.doFilterInternal(HeaderWriterFilter.java:64)
    at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
    at org.springframework.security.web.context.SecurityContextPersistenceFilter.doFilter(SecurityContextPersistenceFilter.java:91)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
    at org.springframework.security.web.context.request.async.WebAsyncManagerIntegrationFilter.doFilterInternal(WebAsyncManagerIntegrationFilter.java:53)
    at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
    at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:330)
    at org.springframework.security.web.FilterChainProxy.doFilterInternal(FilterChainProxy.java:213)
    at org.springframework.security.web.FilterChainProxy.doFilter(FilterChainProxy.java:176)
    at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:346)
    at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:262)
    at org.mortbay.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1212)
    at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:121)
    at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
    at org.mortbay.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1212)
    at org.mortbay.jetty.servlet.ServletHandler.handle(ServletHandler.java:399)
    at org.mortbay.jetty.security.SecurityHandler.handle(SecurityHandler.java:216)
    at org.mortbay.jetty.servlet.SessionHandler.handle(SessionHandler.java:182)
    at org.mortbay.jetty.handler.ContextHandler.handle(ContextHandler.java:766)
    at org.mortbay.jetty.webapp.WebAppContext.handle(WebAppContext.java:450)
    at org.mortbay.jetty.handler.HandlerWrapper.handle(HandlerWrapper.java:152)
    at org.mortbay.jetty.Server.handle(Server.java:326)
    at org.mortbay.jetty.HttpConnection.handleRequest(HttpConnection.java:542)
    at org.mortbay.jetty.HttpConnection$RequestHandler.content(HttpConnection.java:945)
    at org.mortbay.jetty.HttpParser.parseNext(HttpParser.java:756)
    at org.mortbay.jetty.HttpParser.parseAvailable(HttpParser.java:218)
    at org.mortbay.jetty.HttpConnection.handle(HttpConnection.java:404)
    at org.mortbay.io.nio.SelectChannelEndPoint.run(SelectChannelEndPoint.java:410)
    at org.mortbay.thread.QueuedThreadPool$PoolThread.run(QueuedThreadPool.java:582)
    at org.springframework.remoting.support.RemoteInvocationUtils.fillInClientStackTraceIfPossible(RemoteInvocationUtils.java:45)
    at org.springframework.remoting.support.RemoteInvocationResult.recreate(RemoteInvocationResult.java:149)
    at org.springframework.remoting.support.RemoteInvocationBasedAccessor.recreateRemoteInvocationResult(RemoteInvocationBasedAccessor.java:85)
    at org.springframework.remoting.httpinvoker.HttpInvokerClientInterceptor.invoke(HttpInvokerClientInterceptor.java:150)
    at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
    at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)
    at com.sun.proxy.$Proxy38.find(Unknown Source)
    at eu.etaxonomy.taxeditor.preference.PreferencesUtil.getPreferredNomenclaturalCode(PreferencesUtil.java:168)
    at eu.etaxonomy.taxeditor.preference.PreferencesUtil.getPreferredNomenclaturalCode(PreferencesUtil.java:150)
    at eu.etaxonomy.taxeditor.parser.ParseHandler.parseReferencedName(ParseHandler.java:93)
    at eu.etaxonomy.taxeditor.editor.name.container.AbstractGroupedContainer.handleSplitText(AbstractGroupedContainer.java:384)
    at eu.etaxonomy.taxeditor.editor.name.container.AbstractGroupedContainer$9.handleSplitText(AbstractGroupedContainer.java:1123)
    at eu.etaxonomy.taxeditor.editor.name.container.LineBreakListener.verifyText(LineBreakListener.java:83)
    at org.eclipse.swt.widgets.TypedListener.handleEvent(TypedListener.java:265)
    at org.eclipse.swt.widgets.EventTable.sendEvent(EventTable.java:84)
    at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1258)
    at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1282)
    at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1267)
    at org.eclipse.swt.widgets.Widget.notifyListeners(Widget.java:1061)
    at org.eclipse.swt.custom.StyledText.modifyContent(StyledText.java:7148)
    at org.eclipse.swt.custom.StyledText.sendKeyEvent(StyledText.java:7994)
    at org.eclipse.swt.custom.StyledText.doContent(StyledText.java:2456)
    at org.eclipse.swt.custom.StyledText.handleKey(StyledText.java:5911)
    at org.eclipse.swt.custom.StyledText.handleKeyDown(StyledText.java:5941)
    at org.eclipse.swt.custom.StyledText$7.handleEvent(StyledText.java:5635)
    at org.eclipse.swt.widgets.EventTable.sendEvent(EventTable.java:84)
    at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1258)
    at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1282)
    at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1267)
    at org.eclipse.swt.widgets.Widget.sendKeyEvent(Widget.java:1294)
    at org.eclipse.swt.widgets.Widget.gtk_key_press_event(Widget.java:730)
    at org.eclipse.swt.widgets.Control.gtk_key_press_event(Control.java:3019)
    at org.eclipse.swt.widgets.Composite.gtk_key_press_event(Composite.java:734)
    at org.eclipse.swt.widgets.Widget.windowProc(Widget.java:1743)
    at org.eclipse.swt.widgets.Control.windowProc(Control.java:5016)
    at org.eclipse.swt.widgets.Display.windowProc(Display.java:4408)
    at org.eclipse.swt.internal.gtk.OS._gtk_main_do_event(Native Method)
    at org.eclipse.swt.internal.gtk.OS.gtk_main_do_event(OS.java:8422)
    at org.eclipse.swt.widgets.Display.eventProc(Display.java:1245)
    at org.eclipse.swt.internal.gtk.OS._g_main_context_iteration(Native Method)
    at org.eclipse.swt.internal.gtk.OS.g_main_context_iteration(OS.java:2276)
    at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:3207)
    at org.eclipse.ui.internal.Workbench.runEventLoop(Workbench.java:2701)
    at org.eclipse.ui.internal.Workbench.runUI(Workbench.java:2665)
    at org.eclipse.ui.internal.Workbench.access$4(Workbench.java:2499)
    at org.eclipse.ui.internal.Workbench$7.run(Workbench.java:679)
    at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:332)
    at org.eclipse.ui.internal.Workbench.createAndRunWorkbench(Workbench.java:668)
    at org.eclipse.ui.PlatformUI.createAndRunWorkbench(PlatformUI.java:149)
    at eu.etaxonomy.taxeditor.Application.start(Application.java:24)
    at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196)
    at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:110)
    at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:79)
    at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:344)
    at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:179)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:606)
    at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:622)
    at org.eclipse.equinox.launcher.Main.basicRun(Main.java:577)
    at org.eclipse.equinox.launcher.Main.run(Main.java:1410)
    at org.eclipse.equinox.launcher.Main.main(Main.java:1386)
Caused by: java.lang.IllegalArgumentException: Can not set boolean field eu.etaxonomy.cdm.model.metadata.CdmPreference.allowOverride to null value
    at sun.reflect.UnsafeFieldAccessorImpl.throwSetIllegalArgumentException(UnsafeFieldAccessorImpl.java:164)
    at sun.reflect.UnsafeFieldAccessorImpl.throwSetIllegalArgumentException(UnsafeFieldAccessorImpl.java:168)
    at sun.reflect.UnsafeBooleanFieldAccessorImpl.set(UnsafeBooleanFieldAccessorImpl.java:80)
    at java.lang.reflect.Field.set(Field.java:741)
    at org.hibernate.property.access.spi.SetterFieldImpl.set(SetterFieldImpl.java:38)
    ... 177 more

Associated revisions

Revision b6ee6df4 (diff)
Added by Andreas Müller almost 3 years ago

fix #6200 Change order of NomenclaturalCodeUpdater and allowOverride adder to avoid null values

History

#1 Updated by Andreas Müller almost 3 years ago

  • Status changed from New to Resolved
  • % Done changed from 0 to 50

#2 Updated by Andreas Müller almost 3 years ago

  • Priority changed from New to Highest
  • Target version changed from Unassigned CDM tickets to Release 4.4

This was probably an issue in the update script. Fixed now, but for database which already ran the update script you may manually need to update the allowOverride flag in CdmPreference and set it to false

#3 Updated by Patrick Plitzner almost 3 years ago

In my case setting the only one existing preference for which code to use to 0 solved the problem. Before the value was null which caused the error.

Can you close this ticket, Andreas?

#4 Updated by Andreas Müller almost 3 years ago

  • Status changed from Resolved to Closed
  • Target version deleted (Release 4.4)
  • % Done changed from 50 to 100

Update script has been adapted. Remove target version as this was a temporary issue only caused by model update coming with 4.4

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