bug #10277
closed
HibernateSystemException and BridgeException not in taxeditor dependencies
Added by Andreas Müller about 1 year ago.
Updated about 1 year ago.
Description
last remote service : http://132.248.13.83:8080/cdmserver/cdm_flora_mexico/remoting/taxonnode.service
last remote method : getDbSchemaVersion
last remote request client time : 2023-03-20T13:34:29.568
last remote request response header time : Mon, 20 Mar 2023 19:33:48 GMT
client error time : 2023-03-20T13:34:31.13
login : w.berendsohn
editor version : 5.35.0
server : 132.248.13.83 (Mexico) / cdm_flora_mexico
schema version : 5.35.1.0.20221218
os : Windows 10 10.0 amd64
java : 1.8.0_333
org.eclipse.e4.core.di.InjectionException: org.springframework.remoting.RemoteAccessException: Could not deserialize result from HTTP invoker remote service [http://132.248.13.83:8080/cdmserver/cdm_flora_mexico/remoting/taxonnode.service]; nested exception is java.lang.ClassNotFoundException: org.springframework.orm.hibernate5.HibernateSystemException cannot be found by eu.etaxonomy.taxeditor.cdmlib_5.35.0
at org.eclipse.e4.core.internal.di.MethodRequestor.execute(MethodRequestor.java:65)
at org.eclipse.e4.core.internal.di.InjectorImpl.invokeUsingClass(InjectorImpl.java:282)
at org.eclipse.e4.core.internal.di.InjectorImpl.invoke(InjectorImpl.java:247)
at org.eclipse.e4.core.contexts.ContextInjectionFactory.invoke(ContextInjectionFactory.java:90)
at org.eclipse.e4.ui.internal.workbench.PartServiceSaveHandler.save(PartServiceSaveHandler.java:57)
at org.eclipse.ui.internal.WorkbenchWindow$7.save(WorkbenchWindow.java:594)
at org.eclipse.e4.ui.internal.workbench.PartServiceImpl.savePart(PartServiceImpl.java:1390)
at eu.etaxonomy.taxeditor.workbench.SaveHandler.execute(SaveHandler.java:42)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.lang.reflect.Method.invoke(Unknown Source)
at org.eclipse.e4.core.internal.di.MethodRequestor.execute(MethodRequestor.java:55)
at org.eclipse.e4.core.internal.di.InjectorImpl.invokeUsingClass(InjectorImpl.java:282)
at org.eclipse.e4.core.internal.di.InjectorImpl.invoke(InjectorImpl.java:264)
at org.eclipse.e4.core.contexts.ContextInjectionFactory.invoke(ContextInjectionFactory.java:132)
at org.eclipse.e4.core.commands.internal.HandlerServiceHandler.execute(HandlerServiceHandler.java:152)
at org.eclipse.core.commands.Command.executeWithChecks(Command.java:494)
at org.eclipse.core.commands.ParameterizedCommand.executeWithChecks(ParameterizedCommand.java:488)
at org.eclipse.e4.core.commands.internal.HandlerServiceImpl.executeHandler(HandlerServiceImpl.java:210)
at org.eclipse.e4.ui.workbench.renderers.swt.HandledContributionItem.executeItem(HandledContributionItem.java:433)
at org.eclipse.e4.ui.workbench.renderers.swt.AbstractContributionItem.handleWidgetSelection(AbstractContributionItem.java:454)
at org.eclipse.e4.ui.workbench.renderers.swt.AbstractContributionItem$3.handleEvent(AbstractContributionItem.java:482)
at org.eclipse.swt.widgets.EventTable.sendEvent(EventTable.java:84)
at org.eclipse.swt.widgets.Display.sendEvent(Display.java:4418)
at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1079)
at org.eclipse.swt.widgets.Display.runDeferredEvents(Display.java:4236)
at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:3824)
at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine$4.run(PartRenderingEngine.java:1121)
at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:336)
at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine.run(PartRenderingEngine.java:1022)
at org.eclipse.e4.ui.internal.workbench.E4Workbench.createAndRunUI(E4Workbench.java:150)
at org.eclipse.ui.internal.Workbench$5.run(Workbench.java:693)
at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:336)
at org.eclipse.ui.internal.Workbench.createAndRunWorkbench(Workbench.java:610)
at org.eclipse.ui.PlatformUI.createAndRunWorkbench(PlatformUI.java:148)
at eu.etaxonomy.taxeditor.Application.start(Application.java:20)
at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:134)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:388)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:243)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.lang.reflect.Method.invoke(Unknown Source)
at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:673)
at org.eclipse.equinox.launcher.Main.basicRun(Main.java:610)
at org.eclipse.equinox.launcher.Main.run(Main.java:1519)
Caused by: org.springframework.remoting.RemoteAccessException: Could not deserialize result from HTTP invoker remote service [http://132.248.13.83:8080/cdmserver/cdm_flora_mexico/remoting/taxonnode.service]; nested exception is java.lang.ClassNotFoundException: org.springframework.orm.hibernate5.HibernateSystemException cannot be found by eu.etaxonomy.taxeditor.cdmlib_5.35.0
at org.springframework.remoting.httpinvoker.HttpInvokerClientInterceptor.convertHttpInvokerAccessException(HttpInvokerClientInterceptor.java:221)
at org.springframework.remoting.httpinvoker.HttpInvokerClientInterceptor.invoke(HttpInvokerClientInterceptor.java:153)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
at com.sun.proxy.$Proxy89.merge(Unknown Source)
at eu.etaxonomy.taxeditor.editor.e4.TaxonEditorInput.merge(TaxonEditorInput.java:407)
at eu.etaxonomy.taxeditor.editor.name.e4.TaxonEditor.save(TaxonEditor.java:392)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.lang.reflect.Method.invoke(Unknown Source)
at org.eclipse.e4.core.internal.di.MethodRequestor.execute(MethodRequestor.java:55)
... 48 more
Caused by: java.lang.ClassNotFoundException: org.springframework.orm.hibernate5.HibernateSystemException cannot be found by eu.etaxonomy.taxeditor.cdmlib_5.35.0
at org.eclipse.osgi.internal.loader.BundleLoader.findClassInternal(BundleLoader.java:461)
at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:372)
at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:364)
at org.eclipse.osgi.internal.loader.ModuleClassLoader.loadClass(ModuleClassLoader.java:161)
at java.lang.ClassLoader.loadClass(Unknown Source)
at java.lang.Class.forName0(Native Method)
at java.lang.Class.forName(Unknown Source)
at java.io.ObjectInputStream.resolveClass(Unknown Source)
at org.springframework.core.ConfigurableObjectInputStream.resolveClass(ConfigurableObjectInputStream.java:78)
at java.io.ObjectInputStream.readNonProxyDesc(Unknown Source)
at java.io.ObjectInputStream.readClassDesc(Unknown Source)
at java.io.ObjectInputStream.readOrdinaryObject(Unknown Source)
at java.io.ObjectInputStream.readObject0(Unknown Source)
at java.io.ObjectInputStream.defaultReadFields(Unknown Source)
at java.io.ObjectInputStream.readSerialData(Unknown Source)
at java.io.ObjectInputStream.readOrdinaryObject(Unknown Source)
at java.io.ObjectInputStream.readObject0(Unknown Source)
at java.io.ObjectInputStream.defaultReadFields(Unknown Source)
at java.io.ObjectInputStream.readSerialData(Unknown Source)
at java.io.ObjectInputStream.readOrdinaryObject(Unknown Source)
at java.io.ObjectInputStream.readObject0(Unknown Source)
at java.io.ObjectInputStream.readObject(Unknown Source)
at java.io.ObjectInputStream.readObject(Unknown Source)
at org.springframework.remoting.httpinvoker.AbstractHttpInvokerRequestExecutor.doReadRemoteInvocationResult(AbstractHttpInvokerRequestExecutor.java:291)
at org.springframework.remoting.httpinvoker.AbstractHttpInvokerRequestExecutor.readRemoteInvocationResult(AbstractHttpInvokerRequestExecutor.java:242)
at org.springframework.remoting.httpinvoker.HttpComponentsHttpInvokerRequestExecutor.doExecuteRequest(HttpComponentsHttpInvokerRequestExecutor.java:248)
at org.springframework.remoting.httpinvoker.AbstractHttpInvokerRequestExecutor.executeRequest(AbstractHttpInvokerRequestExecutor.java:137)
at org.springframework.remoting.httpinvoker.HttpInvokerClientInterceptor.executeRequest(HttpInvokerClientInterceptor.java:202)
at org.springframework.remoting.httpinvoker.HttpInvokerClientInterceptor.executeRequest(HttpInvokerClientInterceptor.java:184)
at org.springframework.remoting.httpinvoker.CachingHttpInvokerProxyFactoryBean.doExecuteRequest(CachingHttpInvokerProxyFactoryBean.java:161)
at org.springframework.remoting.httpinvoker.CachingHttpInvokerProxyFactoryBean.handleGeneralRequest(CachingHttpInvokerProxyFactoryBean.java:95)
at org.springframework.remoting.httpinvoker.CachingHttpInvokerProxyFactoryBean.executeRequest(CachingHttpInvokerProxyFactoryBean.java:88)
at org.springframework.remoting.httpinvoker.HttpInvokerClientInterceptor.invoke(HttpInvokerClientInterceptor.java:150)
... 58 more
- Status changed from New to Resolved
- Assignee changed from Andreas Müller to Katja Luther
- % Done changed from 0 to 70
I tried to fix this by adding the spring-orm dependency. Please review.
In the long run we should try to find a way to handle this without adding the dependency. However, it is difficult to solve as it is unclear why and when this exception is thrown.
- Status changed from Resolved to Feedback
- Assignee changed from Katja Luther to Andreas Müller
Unfortunatly I got this exception again with nightly and the flora mexico instance on test.
- Assignee changed from Andreas Müller to Katja Luther
Can you send me the stacktrace and can you check locally in your IDE if the class is available. From the stacktrace can you see which plugin requires the class?
Maybe we still need to add the classes package to the export packages in Manifest MF.
Can you take over this ticket?
Fixing the above dependency lead to a followup exception for another missing dependency. BridgeException in hibernate-search-engine.
Generally the problem does only appear if NamedArea vocabularies are not handled correct in the CDM db. It happened after moving some countries to a user defined vocabulary for named areas with some other named areas. But still unclear why it is thrown. Maybe a hidden ClassCastException.
More research shows that the exception was thrown by hibernate search and a CCE during indexing:
org.springframework.orm.hibernate5.HibernateSystemException: Error while indexing in Hibernate Search (before transaction completion); nested exception is org.hibernate.HibernateException: Error while indexing in Hibernate Search (before transaction completion)
at org.springframework.orm.hibernate5.SessionFactoryUtils.convertHibernateAccessException(SessionFactoryUtils.java:296)
at org.springframework.orm.hibernate5.HibernateTransactionManager.convertHibernateAccessException(HibernateTransactionManager.java:755)
at org.springframework.orm.hibernate5.HibernateTransactionManager.doCommit(HibernateTransactionManager.java:590)
at org.springframework.transaction.support.AbstractPlatformTransactionManager.processCommit(AbstractPlatformTransactionManager.java:765)
at org.springframework.transaction.support.AbstractPlatformTransactionManager.commit(AbstractPlatformTransactionManager.java:734)
at org.springframework.transaction.interceptor.TransactionAspectSupport.commitTransactionAfterReturning(TransactionAspectSupport.java:522)
at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:293)
at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
at com.sun.proxy.$Proxy4987.merge(Unknown Source)
at sun.reflect.GeneratedMethodAccessor2435.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
at org.springframework.remoting.support.RemoteInvocationTraceInterceptor.invoke(RemoteInvocationTraceInterceptor.java:78)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
at com.sun.proxy.$Proxy5574.merge(Unknown Source)
at sun.reflect.GeneratedMethodAccessor2533.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.springframework.remoting.support.RemoteInvocation.invoke(RemoteInvocation.java:212)
at eu.etaxonomy.cdm.api.remoting.DebuggingRemoteInvocationExecutor.invoke(DebuggingRemoteInvocationExecutor.java:52)
at org.springframework.remoting.support.RemoteInvocationBasedExporter.invoke(RemoteInvocationBasedExporter.java:78)
at org.springframework.remoting.support.RemoteInvocationBasedExporter.invokeAndCreateResult(RemoteInvocationBasedExporter.java:114)
at org.springframework.remoting.httpinvoker.HttpInvokerServiceExporter.handleRequest(HttpInvokerServiceExporter.java:80)
at org.springframework.web.servlet.mvc.HttpRequestHandlerAdapter.handle(HttpRequestHandlerAdapter.java:51)
at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:967)
at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:901)
at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:970)
at org.springframework.web.servlet.FrameworkServlet.doPost(FrameworkServlet.java:872)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:707)
at org.springframework.web.servlet.FrameworkServlet.service(FrameworkServlet.java:846)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:790)
at org.eclipse.jetty.servlet.ServletHolder$NotAsyncServlet.service(ServletHolder.java:1395)
at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:755)
at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1617)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:317)
at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java:127)
at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.doFilter(FilterSecurityInterceptor.java:91)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
at org.springframework.security.web.access.ExceptionTranslationFilter.doFilter(ExceptionTranslationFilter.java:114)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
at org.springframework.security.web.session.SessionManagementFilter.doFilter(SessionManagementFilter.java:137)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
at org.springframework.security.web.servletapi.SecurityContextHolderAwareRequestFilter.doFilter(SecurityContextHolderAwareRequestFilter.java:170)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
at org.springframework.security.web.savedrequest.RequestCacheAwareFilter.doFilter(RequestCacheAwareFilter.java:63)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
at org.springframework.security.web.authentication.www.BasicAuthenticationFilter.doFilterInternal(BasicAuthenticationFilter.java:215)
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
at org.springframework.security.web.authentication.logout.LogoutFilter.doFilter(LogoutFilter.java:116)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
at org.springframework.security.web.header.HeaderWriterFilter.doFilterInternal(HeaderWriterFilter.java:66)
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
at org.springframework.security.web.context.SecurityContextPersistenceFilter.doFilter(SecurityContextPersistenceFilter.java:105)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
at org.springframework.security.web.context.request.async.WebAsyncManagerIntegrationFilter.doFilterInternal(WebAsyncManagerIntegrationFilter.java:56)
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
at org.springframework.security.web.FilterChainProxy.doFilterInternal(FilterChainProxy.java:214)
at org.springframework.security.web.FilterChainProxy.doFilter(FilterChainProxy.java:177)
at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:347)
at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:263)
at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1604)
at eu.etaxonomy.cdm.servlet.DateHeaderFilter.doFilter(DateHeaderFilter.java:56)
at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1604)
at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:197)
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1596)
at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:545)
at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)
at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:590)
at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:127)
at org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:235)
at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:1607)
at org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:233)
at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1297)
at org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:188)
at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:485)
at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:1577)
at org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:186)
at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1212)
at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:127)
at eu.etaxonomy.cdm.server.logging.InstanceLogWrapper.handle(InstanceLogWrapper.java:48)
at org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:221)
at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:127)
at org.eclipse.jetty.server.Server.handle(Server.java:500)
at org.eclipse.jetty.server.HttpChannel.lambda$handle$1(HttpChannel.java:383)
at org.eclipse.jetty.server.HttpChannel.dispatch(HttpChannel.java:547)
at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:375)
at org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:270)
at org.eclipse.jetty.io.AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:311)
at org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:103)
at org.eclipse.jetty.io.ChannelEndPoint$2.run(ChannelEndPoint.java:117)
at org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.runTask(EatWhatYouKill.java:336)
at org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.doProduce(EatWhatYouKill.java:313)
at org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.tryProduce(EatWhatYouKill.java:171)
at org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.run(EatWhatYouKill.java:129)
at org.eclipse.jetty.util.thread.ReservedThreadExecutor$ReservedThread.run(ReservedThreadExecutor.java:388)
at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:806)
at org.eclipse.jetty.util.thread.QueuedThreadPool$Runner.run(QueuedThreadPool.java:938)
at java.lang.Thread.run(Thread.java:748)
at org.springframework.remoting.support.RemoteInvocationUtils.fillInClientStackTraceIfPossible(RemoteInvocationUtils.java:45)
at org.springframework.remoting.support.RemoteInvocationResult.recreate(RemoteInvocationResult.java:149)
at org.springframework.remoting.support.RemoteInvocationBasedAccessor.recreateRemoteInvocationResult(RemoteInvocationBasedAccessor.java:85)
at org.springframework.remoting.httpinvoker.HttpInvokerClientInterceptor.invoke(HttpInvokerClientInterceptor.java:158)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
at com.sun.proxy.$Proxy93.merge(Unknown Source)
at eu.etaxonomy.taxeditor.editor.e4.TaxonEditorInput.merge(TaxonEditorInput.java:409)
at eu.etaxonomy.taxeditor.editor.name.e4.TaxonEditor.save(TaxonEditor.java:392)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.eclipse.e4.core.internal.di.MethodRequestor.execute(MethodRequestor.java:55)
at org.eclipse.e4.core.internal.di.InjectorImpl.invokeUsingClass(InjectorImpl.java:282)
at org.eclipse.e4.core.internal.di.InjectorImpl.invoke(InjectorImpl.java:247)
at org.eclipse.e4.core.contexts.ContextInjectionFactory.invoke(ContextInjectionFactory.java:90)
at org.eclipse.e4.ui.internal.workbench.PartServiceSaveHandler.save(PartServiceSaveHandler.java:57)
at org.eclipse.ui.internal.WorkbenchWindow$7.save(WorkbenchWindow.java:594)
at org.eclipse.e4.ui.internal.workbench.PartServiceImpl.savePart(PartServiceImpl.java:1390)
at eu.etaxonomy.taxeditor.workbench.SaveHandler.execute(SaveHandler.java:42)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.eclipse.e4.core.internal.di.MethodRequestor.execute(MethodRequestor.java:55)
at org.eclipse.e4.core.internal.di.InjectorImpl.invokeUsingClass(InjectorImpl.java:282)
at org.eclipse.e4.core.internal.di.InjectorImpl.invoke(InjectorImpl.java:264)
at org.eclipse.e4.core.contexts.ContextInjectionFactory.invoke(ContextInjectionFactory.java:132)
at org.eclipse.e4.core.commands.internal.HandlerServiceHandler.execute(HandlerServiceHandler.java:152)
at org.eclipse.core.commands.Command.executeWithChecks(Command.java:494)
at org.eclipse.core.commands.ParameterizedCommand.executeWithChecks(ParameterizedCommand.java:488)
at org.eclipse.e4.core.commands.internal.HandlerServiceImpl.executeHandler(HandlerServiceImpl.java:210)
at org.eclipse.e4.ui.bindings.keys.KeyBindingDispatcher.executeCommand(KeyBindingDispatcher.java:286)
at org.eclipse.e4.ui.bindings.keys.KeyBindingDispatcher.press(KeyBindingDispatcher.java:507)
at org.eclipse.e4.ui.bindings.keys.KeyBindingDispatcher.processKeyEvent(KeyBindingDispatcher.java:558)
at org.eclipse.e4.ui.bindings.keys.KeyBindingDispatcher.filterKeySequenceBindings(KeyBindingDispatcher.java:378)
at org.eclipse.e4.ui.bindings.keys.KeyBindingDispatcher.access$0(KeyBindingDispatcher.java:324)
at org.eclipse.e4.ui.bindings.keys.KeyBindingDispatcher$KeyDownFilter.handleEvent(KeyBindingDispatcher.java:86)
at org.eclipse.swt.widgets.EventTable.sendEvent(EventTable.java:84)
at org.eclipse.swt.widgets.Display.filterEvent(Display.java:1270)
at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1078)
at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1103)
at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1088)
at org.eclipse.swt.widgets.Widget.sendKeyEvent(Widget.java:1130)
at org.eclipse.swt.widgets.Text.sendKeyEvent(Text.java:1789)
at org.eclipse.swt.widgets.Widget.sendKeyEvent(Widget.java:1126)
at org.eclipse.swt.widgets.Widget.wmChar(Widget.java:1547)
at org.eclipse.swt.widgets.Control.WM_CHAR(Control.java:4918)
at org.eclipse.swt.widgets.Text.WM_CHAR(Text.java:2722)
at org.eclipse.swt.widgets.Control.windowProc(Control.java:4799)
at org.eclipse.swt.widgets.Text.windowProc(Text.java:2704)
at org.eclipse.swt.widgets.Display.windowProc(Display.java:5110)
at org.eclipse.swt.internal.win32.OS.DispatchMessageW(Native Method)
at org.eclipse.swt.internal.win32.OS.DispatchMessage(OS.java:2552)
at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:3822)
at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine$4.run(PartRenderingEngine.java:1121)
at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:336)
at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine.run(PartRenderingEngine.java:1022)
at org.eclipse.e4.ui.internal.workbench.E4Workbench.createAndRunUI(E4Workbench.java:150)
at org.eclipse.ui.internal.Workbench$5.run(Workbench.java:693)
at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:336)
at org.eclipse.ui.internal.Workbench.createAndRunWorkbench(Workbench.java:610)
at org.eclipse.ui.PlatformUI.createAndRunWorkbench(PlatformUI.java:148)
at eu.etaxonomy.taxeditor.Application.start(Application.java:20)
at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:134)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:388)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:243)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:673)
at org.eclipse.equinox.launcher.Main.basicRun(Main.java:610)
at org.eclipse.equinox.launcher.Main.run(Main.java:1519)
at org.eclipse.equinox.launcher.Main.main(Main.java:1492)
Caused by: org.hibernate.HibernateException: Error while indexing in Hibernate Search (before transaction completion)
at org.hibernate.search.event.impl.EventSourceTransactionContext$DelegateToSynchronizationOnBeforeTx.doBeforeTransactionCompletion(EventSourceTransactionContext.java:173)
at org.hibernate.engine.spi.ActionQueue$BeforeTransactionCompletionProcessQueue.beforeTransactionCompletion(ActionQueue.java:954)
at org.hibernate.engine.spi.ActionQueue.beforeTransactionCompletion(ActionQueue.java:525)
at org.hibernate.internal.SessionImpl.beforeTransactionCompletion(SessionImpl.java:2381)
at org.hibernate.engine.jdbc.internal.JdbcCoordinatorImpl.beforeTransactionCompletion(JdbcCoordinatorImpl.java:448)
at org.hibernate.resource.transaction.backend.jdbc.internal.JdbcResourceLocalTransactionCoordinatorImpl.beforeCompletionCallback(JdbcResourceLocalTransactionCoordinatorImpl.java:183)
at org.hibernate.resource.transaction.backend.jdbc.internal.JdbcResourceLocalTransactionCoordinatorImpl.access$300(JdbcResourceLocalTransactionCoordinatorImpl.java:40)
at org.hibernate.resource.transaction.backend.jdbc.internal.JdbcResourceLocalTransactionCoordinatorImpl$TransactionDriverControlImpl.commit(JdbcResourceLocalTransactionCoordinatorImpl.java:281)
at org.hibernate.engine.transaction.internal.TransactionImpl.commit(TransactionImpl.java:101)
at org.springframework.orm.hibernate5.HibernateTransactionManager.doCommit(HibernateTransactionManager.java:582)
... 184 more
Caused by: org.hibernate.search.bridge.BridgeException: Exception while calling bridge#set
entity class: eu.etaxonomy.cdm.model.description.Distribution
entity property path: area
document field name: area.
field bridge: eu.etaxonomy.cdm.hibernate.search.DefinedTermBaseClassBridge@35a75614
at org.hibernate.search.bridge.util.impl.ContextualExceptionBridgeHelper.buildBridgeException(ContextualExceptionBridgeHelper.java:104)
at org.hibernate.search.bridge.util.impl.ContextualExceptionBridgeHelper$OneWayConversionContextImpl.set(ContextualExceptionBridgeHelper.java:138)
at org.hibernate.search.engine.spi.DocumentBuilderIndexedEntity.buildDocumentFieldForClassBridges(DocumentBuilderIndexedEntity.java:901)
at org.hibernate.search.engine.spi.DocumentBuilderIndexedEntity.buildDocumentFields(DocumentBuilderIndexedEntity.java:465)
at org.hibernate.search.engine.spi.DocumentBuilderIndexedEntity.buildDocumentFieldsForEmbeddedObjects(DocumentBuilderIndexedEntity.java:593)
at org.hibernate.search.engine.spi.DocumentBuilderIndexedEntity.buildDocumentFields(DocumentBuilderIndexedEntity.java:482)
at org.hibernate.search.engine.spi.DocumentBuilderIndexedEntity.getDocument(DocumentBuilderIndexedEntity.java:402)
at org.hibernate.search.engine.spi.DocumentBuilderIndexedEntity.createUpdateWork(DocumentBuilderIndexedEntity.java:312)
at org.hibernate.search.engine.spi.DocumentBuilderIndexedEntity.addWorkToQueue(DocumentBuilderIndexedEntity.java:254)
at org.hibernate.search.engine.impl.WorkPlan$PerEntityWork.enqueueLuceneWork(WorkPlan.java:560)
at org.hibernate.search.engine.impl.WorkPlan$PerClassWork.enqueueLuceneWork(WorkPlan.java:322)
at org.hibernate.search.engine.impl.WorkPlan.getPlannedLuceneWork(WorkPlan.java:188)
at org.hibernate.search.backend.impl.WorkQueue.prepareWorkPlan(WorkQueue.java:115)
at org.hibernate.search.backend.impl.BatchedQueueingProcessor.prepareWorks(BatchedQueueingProcessor.java:55)
at org.hibernate.search.backend.impl.PostTransactionWorkQueueSynchronization.beforeCompletion(PostTransactionWorkQueueSynchronization.java:69)
at org.hibernate.search.event.impl.EventSourceTransactionContext$DelegateToSynchronizationOnBeforeTx.doBeforeTransactionCompletion(EventSourceTransactionContext.java:170)
... 193 more
Caused by: java.lang.ClassCastException: Cannot cast eu.etaxonomy.cdm.model.location.NamedArea to eu.etaxonomy.cdm.model.location.Country
at java.lang.Class.cast(Class.java:3369)
at eu.etaxonomy.cdm.hibernate.HibernateProxyHelper.deproxy(HibernateProxyHelper.java:50)
at eu.etaxonomy.cdm.model.common.CdmBase.deproxy(CdmBase.java:339)
at eu.etaxonomy.cdm.model.term.DefinedTermBase.getPartOf(DefinedTermBase.java:291)
at eu.etaxonomy.cdm.model.location.NamedArea.getPartOf(NamedArea.java:281)
at eu.etaxonomy.cdm.model.location.NamedArea.getPartOf(NamedArea.java:1)
at eu.etaxonomy.cdm.hibernate.search.DefinedTermBaseClassBridge.set(DefinedTermBaseClassBridge.java:65)
at org.hibernate.search.bridge.util.impl.ContextualExceptionBridgeHelper$OneWayConversionContextImpl.set(ContextualExceptionBridgeHelper.java:135)
... 207 more
- Copied to task #10285: Catch hibernate search exception so hibernate search dependencies are not needed anymore added
- Status changed from Feedback to Closed
- Assignee changed from Katja Luther to Andreas Müller
- Priority changed from New to Priority13
- % Done changed from 70 to 100
The issue is fixed by adding 2 missing libraries (in case a similar exception is thrown again), by fixing #5556 (the reason why originally a CCE was thrown) and by fixing data in eFloraMex DB (remove countries from user defined vocabulary).
Open issue to handle exceptions better moved to #10285
- Subject changed from HibernateSystemException not in taxeditor dependencies to HibernateSystemException and BridgeException not in taxeditor dependencies
- Related to bug #5556: Class Cast Exception in DefinedTermDaoImpl.getPartOf added
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