bug #10114: Problem with parser for author string with whitespace between initials - EDIT - EDIT Project Management

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bug #10114

closed

Problem with parser for author string with whitespace between initials

Added by Katja Luther over 1 year ago. Updated about 1 year ago.

Status:

Closed

Priority:

Highest

Assignee:

Andreas Müller

Category:

cdmlib

Target version:

Release 5.33

Start date:

Due date:

% Done:

100%

Estimated time:

Severity:

blocker

Found in Version:

Description

mail ERS:

irgendetwas stimmt mit dem Parser nicht.

Ich bekomme diese Fehlermeldung, wenn ich lediglich eine Initiale für einen Autor hinzufüge:

Muscari microstomum P. H. Davis & D. Stuart in Lily Year-Book 30: 124. 1966

wird noch geparst.

Richtig ist

Muscari microstomum P. H. Davis & D. C. Stuart in Lily Year-Book 30: 124. 1966

Wenn ich im Freitext-Editor das “C.“ bei Stuart hinzufüge, kommt die Fehlermeldung.

last remote method : https://api.cybertaxonomy.org:443/euromed/remoting/name.service
last remote request client time : 2022-08-11T17:41:57.432
last remote request response header time : Thu, 11 Aug 2022 15:41:57 GMT
client error time : 2022-08-11T17:41:57.929
login : e.raabstraube
editor version : 5.32.0
server : api.cybertaxonomy.org (cybertaxonomy.org) / euromed
schema version : 5.32.0.0.20220807
os : Windows 10 10.0 amd64
java : 1.8.0_201
org.eclipse.e4.core.di.InjectionException: javax.persistence.PersistenceException: org.hibernate.exception.GenericJDBCException: could not execute statement
                at org.eclipse.e4.core.internal.di.MethodRequestor.execute(MethodRequestor.java:65)
                at org.eclipse.e4.core.internal.di.InjectorImpl.invokeUsingClass(InjectorImpl.java:282)
                at org.eclipse.e4.core.internal.di.InjectorImpl.invoke(InjectorImpl.java:247)
                at org.eclipse.e4.core.contexts.ContextInjectionFactory.invoke(ContextInjectionFactory.java:90)
                at org.eclipse.e4.ui.internal.workbench.PartServiceSaveHandler.save(PartServiceSaveHandler.java:57)
                at org.eclipse.ui.internal.WorkbenchWindow$7.save(WorkbenchWindow.java:594)
                at org.eclipse.e4.ui.internal.workbench.PartServiceImpl.savePart(PartServiceImpl.java:1390)
                at org.eclipse.e4.ui.workbench.renderers.swt.StackRenderer.closePart(StackRenderer.java:1295)
                at org.eclipse.e4.ui.workbench.renderers.swt.StackRenderer.access$2(StackRenderer.java:1278)
                at org.eclipse.e4.ui.workbench.renderers.swt.StackRenderer$7.close(StackRenderer.java:1163)
                at org.eclipse.swt.custom.CTabFolder.onMouse(CTabFolder.java:1930)
                at org.eclipse.swt.custom.CTabFolder$1.handleEvent(CTabFolder.java:338)
                at org.eclipse.swt.widgets.EventTable.sendEvent(EventTable.java:84)
                at org.eclipse.swt.widgets.Display.sendEvent(Display.java:4418)
                at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1079)
                at org.eclipse.swt.widgets.Display.runDeferredEvents(Display.java:4236)
                at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:3824)
                at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine$4.run(PartRenderingEngine.java:1121)
                at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:336)
                at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine.run(PartRenderingEngine.java:1022)
                at org.eclipse.e4.ui.internal.workbench.E4Workbench.createAndRunUI(E4Workbench.java:150)
                at org.eclipse.ui.internal.Workbench$5.run(Workbench.java:693)
                at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:336)
                at org.eclipse.ui.internal.Workbench.createAndRunWorkbench(Workbench.java:610)
                at org.eclipse.ui.PlatformUI.createAndRunWorkbench(PlatformUI.java:148)
                at eu.etaxonomy.taxeditor.Application.start(Application.java:20)
                at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196)
                at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:134)
                at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104)
                at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:388)
                at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:243)
                at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
                at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
                at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
                at java.lang.reflect.Method.invoke(Unknown Source)
                at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:673)
                at org.eclipse.equinox.launcher.Main.basicRun(Main.java:610)
                at org.eclipse.equinox.launcher.Main.run(Main.java:1519)
Caused by: javax.persistence.PersistenceException: org.hibernate.exception.GenericJDBCException: could not execute statement
                at org.hibernate.internal.ExceptionConverterImpl.convert(ExceptionConverterImpl.java:154)
                at org.hibernate.internal.ExceptionConverterImpl.convert(ExceptionConverterImpl.java:181)
                at org.hibernate.internal.ExceptionConverterImpl.convert(ExceptionConverterImpl.java:188)
                at org.hibernate.internal.SessionImpl.doFlush(SessionImpl.java:1366)
                at org.hibernate.internal.SessionImpl.flush(SessionImpl.java:1349)
                at eu.etaxonomy.cdm.persistence.dao.hibernate.common.CdmGenericDaoImpl.findMatching(CdmGenericDaoImpl.java:638)
                at eu.etaxonomy.cdm.persistence.dao.hibernate.common.CdmGenericDaoImpl.findMatching(CdmGenericDaoImpl.java:625)
                at eu.etaxonomy.cdm.api.service.CommonServiceImpl.findMatching(CommonServiceImpl.java:273)
                at sun.reflect.GeneratedMethodAccessor24700.invoke(Unknown Source)
                at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
                at java.lang.reflect.Method.invoke(Method.java:498)
                at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
                at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
                at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
                at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:283)
                at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
                at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
                at com.sun.proxy.$Proxy2374.findMatching(Unknown Source)
                at eu.etaxonomy.cdm.api.service.NameServiceImpl.deduplicateTeam(NameServiceImpl.java:1285)
                at eu.etaxonomy.cdm.api.service.NameServiceImpl.deduplicateAuthor(NameServiceImpl.java:1274)
                at eu.etaxonomy.cdm.api.service.NameServiceImpl.parseName(NameServiceImpl.java:1231)
                at sun.reflect.GeneratedMethodAccessor25072.invoke(Unknown Source)
                at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
                at java.lang.reflect.Method.invoke(Method.java:498)
                at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
                at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
                at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
                at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:283)
                at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
                at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
                at com.sun.proxy.$Proxy2398.parseName(Unknown Source)
                at sun.reflect.GeneratedMethodAccessor25072.invoke(Unknown Source)
                at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
                at java.lang.reflect.Method.invoke(Method.java:498)
                at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
                at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
                at org.springframework.remoting.support.RemoteInvocationTraceInterceptor.invoke(RemoteInvocationTraceInterceptor.java:78)
                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
                at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
                at com.sun.proxy.$Proxy2509.parseName(Unknown Source)
                at sun.reflect.GeneratedMethodAccessor91722.invoke(Unknown Source)
                at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
                at java.lang.reflect.Method.invoke(Method.java:498)
                at org.springframework.remoting.support.RemoteInvocation.invoke(RemoteInvocation.java:212)
                at eu.etaxonomy.cdm.api.remoting.DebuggingRemoteInvocationExecutor.invoke(DebuggingRemoteInvocationExecutor.java:52)
                at org.springframework.remoting.support.RemoteInvocationBasedExporter.invoke(RemoteInvocationBasedExporter.java:78)
                at org.springframework.remoting.support.RemoteInvocationBasedExporter.invokeAndCreateResult(RemoteInvocationBasedExporter.java:114)
                at org.springframework.remoting.httpinvoker.HttpInvokerServiceExporter.handleRequest(HttpInvokerServiceExporter.java:80)
                at org.springframework.web.servlet.mvc.HttpRequestHandlerAdapter.handle(HttpRequestHandlerAdapter.java:51)
                at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:967)
                at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:901)
                at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:970)
                at org.springframework.web.servlet.FrameworkServlet.doPost(FrameworkServlet.java:872)
                at javax.servlet.http.HttpServlet.service(HttpServlet.java:707)
                at org.springframework.web.servlet.FrameworkServlet.service(FrameworkServlet.java:846)
                at javax.servlet.http.HttpServlet.service(HttpServlet.java:790)
                at org.eclipse.jetty.servlet.ServletHolder$NotAsyncServlet.service(ServletHolder.java:1395)
                at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:755)
                at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1617)
                at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:317)
                at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java:127)
                at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.doFilter(FilterSecurityInterceptor.java:91)
                at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
                at org.springframework.security.web.access.ExceptionTranslationFilter.doFilter(ExceptionTranslationFilter.java:114)
                at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
                at org.springframework.security.web.session.SessionManagementFilter.doFilter(SessionManagementFilter.java:137)
                at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
                at org.springframework.security.web.servletapi.SecurityContextHolderAwareRequestFilter.doFilter(SecurityContextHolderAwareRequestFilter.java:170)
                at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
                at org.springframework.security.web.savedrequest.RequestCacheAwareFilter.doFilter(RequestCacheAwareFilter.java:63)
                at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
                at org.springframework.security.web.authentication.www.BasicAuthenticationFilter.doFilterInternal(BasicAuthenticationFilter.java:215)
                at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
                at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
                at org.springframework.security.web.authentication.logout.LogoutFilter.doFilter(LogoutFilter.java:116)
                at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
                at org.springframework.security.web.header.HeaderWriterFilter.doFilterInternal(HeaderWriterFilter.java:66)
                at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
                at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
                at org.springframework.security.web.context.SecurityContextPersistenceFilter.doFilter(SecurityContextPersistenceFilter.java:105)
                at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
                at org.springframework.security.web.context.request.async.WebAsyncManagerIntegrationFilter.doFilterInternal(WebAsyncManagerIntegrationFilter.java:56)
                at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
                at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
                at org.springframework.security.web.FilterChainProxy.doFilterInternal(FilterChainProxy.java:214)
                at org.springframework.security.web.FilterChainProxy.doFilter(FilterChainProxy.java:177)
                at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:347)
                at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:263)
                at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1604)
                at eu.etaxonomy.cdm.servlet.DateHeaderFilter.doFilter(DateHeaderFilter.java:56)
                at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1604)
                at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:197)
                at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
                at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1596)
                at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:545)
                at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)
                at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:590)
                at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:127)
                at org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:235)
                at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:1607)
                at org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:233)
                at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1297)
                at org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:188)
                at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:485)
                at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:1577)
                at org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:186)
                at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1212)
                at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
                at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:127)
                at eu.etaxonomy.cdm.server.logging.InstanceLogWrapper.handle(InstanceLogWrapper.java:48)
                at org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:221)
                at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:127)
                at org.eclipse.jetty.server.Server.handle(Server.java:500)
                at org.eclipse.jetty.server.HttpChannel.lambda$handle$1(HttpChannel.java:383)
                at org.eclipse.jetty.server.HttpChannel.dispatch(HttpChannel.java:547)
                at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:375)
                at org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:270)
                at org.eclipse.jetty.io.AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:311)
                at org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:103)
                at org.eclipse.jetty.io.ChannelEndPoint$2.run(ChannelEndPoint.java:117)
                at org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.runTask(EatWhatYouKill.java:336)
                at org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.doProduce(EatWhatYouKill.java:313)
                at org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.tryProduce(EatWhatYouKill.java:171)
                at org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.run(EatWhatYouKill.java:129)
                at org.eclipse.jetty.util.thread.ReservedThreadExecutor$ReservedThread.run(ReservedThreadExecutor.java:388)
                at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:806)
                at org.eclipse.jetty.util.thread.QueuedThreadPool$Runner.run(QueuedThreadPool.java:938)
                at java.lang.Thread.run(Thread.java:748)
                at org.springframework.remoting.support.RemoteInvocationUtils.fillInClientStackTraceIfPossible(RemoteInvocationUtils.java:45)
                at org.springframework.remoting.support.RemoteInvocationResult.recreate(RemoteInvocationResult.java:149)
                at org.springframework.remoting.support.RemoteInvocationBasedAccessor.recreateRemoteInvocationResult(RemoteInvocationBasedAccessor.java:85)
                at org.springframework.remoting.httpinvoker.HttpInvokerClientInterceptor.invoke(HttpInvokerClientInterceptor.java:158)
                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
                at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
                at com.sun.proxy.$Proxy122.parseName(Unknown Source)
                at eu.etaxonomy.taxeditor.parser.ParseHandler.parseAndResolveDuplicatesNew(ParseHandler.java:141)
                at eu.etaxonomy.taxeditor.parser.ParseHandler.parseAndResolveDuplicates(ParseHandler.java:121)
                at eu.etaxonomy.taxeditor.editor.name.e4.container.AbstractGroupedContainerE4.persistName(AbstractGroupedContainerE4.java:435)
                at eu.etaxonomy.taxeditor.editor.name.e4.TaxonNameEditorE4.save(TaxonNameEditorE4.java:396)
                at sun.reflect.GeneratedMethodAccessor144.invoke(Unknown Source)
                at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
                at java.lang.reflect.Method.invoke(Unknown Source)
                at org.eclipse.e4.core.internal.di.MethodRequestor.execute(MethodRequestor.java:55)
                ... 37 more
Caused by: org.hibernate.exception.GenericJDBCException: could not execute statement
                at org.hibernate.exception.internal.StandardSQLExceptionConverter.convert(StandardSQLExceptionConverter.java:47)
                at org.hibernate.engine.jdbc.spi.SqlExceptionHelper.convert(SqlExceptionHelper.java:113)
                at org.hibernate.engine.jdbc.spi.SqlExceptionHelper.convert(SqlExceptionHelper.java:99)
                at org.hibernate.engine.jdbc.internal.ResultSetReturnImpl.executeUpdate(ResultSetReturnImpl.java:200)
                at org.hibernate.persister.collection.BasicCollectionPersister.doUpdateRow(BasicCollectionPersister.java:310)
                at org.hibernate.persister.collection.BasicCollectionPersister.doUpdateRows(BasicCollectionPersister.java:227)
                at org.hibernate.persister.collection.AbstractCollectionPersister.updateRows(AbstractCollectionPersister.java:1754)
                at org.hibernate.action.internal.CollectionUpdateAction.execute(CollectionUpdateAction.java:88)
                at org.hibernate.engine.spi.ActionQueue.executeActions(ActionQueue.java:604)
                at org.hibernate.engine.spi.ActionQueue.lambda$executeActions$1(ActionQueue.java:478)
                at java.util.LinkedHashMap.forEach(LinkedHashMap.java:684)
                at org.hibernate.engine.spi.ActionQueue.executeActions(ActionQueue.java:475)
                at org.hibernate.event.internal.AbstractFlushingEventListener.performExecutions(AbstractFlushingEventListener.java:344)
                at org.hibernate.event.internal.DefaultFlushEventListener.onFlush(DefaultFlushEventListener.java:40)
                at org.hibernate.event.service.internal.EventListenerGroupImpl.fireEventOnEachListener(EventListenerGroupImpl.java:99)
                at org.hibernate.internal.SessionImpl.doFlush(SessionImpl.java:1362)
                ... 181 more
Caused by: java.sql.SQLException: Connection is read-only. Queries leading to data modification are not allowed
                at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:129)
                at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:97)
                at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:89)
                at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:63)
                at com.mysql.cj.jdbc.ClientPreparedStatement.executeUpdateInternal(ClientPreparedStatement.java:1033)
                at com.mysql.cj.jdbc.ClientPreparedStatement.executeUpdateInternal(ClientPreparedStatement.java:1009)
                at com.mysql.cj.jdbc.ClientPreparedStatement.executeLargeUpdate(ClientPreparedStatement.java:1320)
                at com.mysql.cj.jdbc.ClientPreparedStatement.executeUpdate(ClientPreparedStatement.java:994)
                at com.mchange.v2.c3p0.impl.NewProxyPreparedStatement.executeUpdate(NewProxyPreparedStatement.java:384)
                at org.hibernate.engine.jdbc.internal.ResultSetReturnImpl.executeUpdate(ResultSetReturnImpl.java:197)
                ... 193 more

Related issues

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Updated by Katja Luther over 1 year ago

The exception appears while session.flush() before starting search for matching persons in CdmGenericDaoImpl (line 638)

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Updated by Katja Luther over 1 year ago

This exception also appears when trying to update sortindex in caryo_amaranthaceae.

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Updated by Andreas Müller over 1 year ago

ERS:

danke für das Ticket. Dabei ist zu beachten, dass dieser Fehler durchaus nicht immer auftritt, sondern sogar eher selten. Ich gebe öfter Initialen so mit Leerzeichen ein, und dies ist das erste Mal, dass der Fehler kommt. Wovon das abhängt, ist mir unklar. Vielleicht ist bei genau diesem String noch etwas anderes falsch.

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Updated by Andreas Müller over 1 year ago

Status changed from New to In Progress
Priority changed from New to Highest
Target version changed from Release 5.43 to Release 5.33
Severity changed from normal to blocker

This should have highest priority.

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Updated by Andreas Müller over 1 year ago

Related to task #10067: Update to hibernate 5.4 (or higher) and hibernate search 5.11 and lucene 5.5 added

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Updated by Andreas Müller over 1 year ago

ERS:

ich hatte jetzt die Autoreninitialen vorläufig als D.C. ohne Leerzeichen eingetragen. Es genügt, das Leerzeichen zwischen D. und C. hinzuzufügen, um wieder den Fehler zu produzieren. Vielleicht hilft euch das ja bei der Lösung.

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Updated by Andreas Müller about 1 year ago

Status changed from In Progress to Feedback

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Updated by Andreas Müller about 1 year ago

KL:

in der Methode CdmGenericDaoImpl.findMatching() in Zeile 635 wird als erstes ein flush() aufgerufen, wenn man das raus nimmt, dann kommt der Fehler nicht. Ist nur die Frage, warum das in diesem einen Fall zu Problemen führt.

AM:

... zur Frage, warum das nur hier passiert. Ich nehme an, dass da versucht wird einen titleCache zu updaten. Anders als bei allen anderen DBs wurden die titleCaches bei E+M noch nicht allgemein geupdated, da zu viele um es aus dem Editor heraus zu machen. Muss ich mal von Commandline aus machen. Das reduziert das Problem aber natürlich nur und behebt es nicht. Aber vielleicht kannst du ja auch genauer sehen, was da wirklich versucht wird zu verändern an den Daten.

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Updated by Andreas Müller about 1 year ago

Status changed from Feedback to Resolved
% Done changed from 0 to 70

Applied in changeset cdmlib|25e433f2a4b506913253961cfea7a931b11afa1b.

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#10

Updated by Andreas Müller about 1 year ago

Assignee changed from Andreas Müller to Katja Luther

This is hopefully fixed. Can you please review?

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#11

Updated by Andreas Müller about 1 year ago

Katja Luther wrote in #note-2:

This exception also appears when trying to update sortindex in caryo_amaranthaceae.

Please also check if this is solved with this fix. It might be another method that is read-only here and also needs to be adapted.

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#12

Updated by Katja Luther about 1 year ago

Andreas Müller wrote in #note-11:

Katja Luther wrote in #note-2:

This exception also appears when trying to update sortindex in caryo_amaranthaceae.

Please also check if this is solved with this fix. It might be another method that is read-only here and also needs to be adapted.

here we still get the exception.

14:31:53.959 [Thread-21] ERROR org.hibernate.engine.jdbc.spi.SqlExceptionHelper - Connection is read-only. Queries leading to data modification are not allowed

But I do not have the stacktrace and no exception pops up in the editor???

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#13

Updated by Katja Luther about 1 year ago

Another appearance from Nadja:

ich bekomme diese Fehlermeldung wenn ich ganz normal eine nomenklatorische Referenz eingeben will

Taxon Mcneillia stellata

last remote method : https://api.cybertaxonomy.org:443/caryophyllales_spp/remoting/name.service
last remote request client time : 2022-08-23T16:55:51.918
last remote request response header time : Tue, 23 Aug 2022 14:55:51 GMT
client error time : 2022-08-23T16:55:52.364
login : n.korotkova
editor version : 5.32.0
server : api.cybertaxonomy.org (cybertaxonomy.org) / caryophyllales_spp
schema version : 5.32.0.0.20220807
os : Windows 10 10.0 amd64
java : 1.8.0_121
org.eclipse.e4.core.di.InjectionException: javax.persistence.PersistenceException: org.hibernate.exception.GenericJDBCException: could not execute statement
                at org.eclipse.e4.core.internal.di.MethodRequestor.execute(MethodRequestor.java:65)
                at org.eclipse.e4.core.internal.di.InjectorImpl.invokeUsingClass(InjectorImpl.java:282)
                at org.eclipse.e4.core.internal.di.InjectorImpl.invoke(InjectorImpl.java:247)
                at org.eclipse.e4.core.contexts.ContextInjectionFactory.invoke(ContextInjectionFactory.java:90)
                at org.eclipse.e4.ui.internal.workbench.PartServiceSaveHandler.save(PartServiceSaveHandler.java:57)
                at org.eclipse.ui.internal.WorkbenchWindow$7.save(WorkbenchWindow.java:594)
                at org.eclipse.e4.ui.internal.workbench.PartServiceImpl.savePart(PartServiceImpl.java:1390)
                at eu.etaxonomy.taxeditor.workbench.SaveHandler.execute(SaveHandler.java:38)
                at sun.reflect.GeneratedMethodAccessor126.invoke(Unknown Source)
                at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
                at java.lang.reflect.Method.invoke(Method.java:498)
                at org.eclipse.e4.core.internal.di.MethodRequestor.execute(MethodRequestor.java:55)
                at org.eclipse.e4.core.internal.di.InjectorImpl.invokeUsingClass(InjectorImpl.java:282)
                at org.eclipse.e4.core.internal.di.InjectorImpl.invoke(InjectorImpl.java:264)
                at org.eclipse.e4.core.contexts.ContextInjectionFactory.invoke(ContextInjectionFactory.java:132)
                at org.eclipse.e4.core.commands.internal.HandlerServiceHandler.execute(HandlerServiceHandler.java:152)
                at org.eclipse.core.commands.Command.executeWithChecks(Command.java:494)
                at org.eclipse.core.commands.ParameterizedCommand.executeWithChecks(ParameterizedCommand.java:488)
                at org.eclipse.e4.core.commands.internal.HandlerServiceImpl.executeHandler(HandlerServiceImpl.java:210)
                at org.eclipse.e4.ui.workbench.renderers.swt.HandledContributionItem.executeItem(HandledContributionItem.java:433)
                at org.eclipse.e4.ui.workbench.renderers.swt.AbstractContributionItem.handleWidgetSelection(AbstractContributionItem.java:454)
                at org.eclipse.e4.ui.workbench.renderers.swt.AbstractContributionItem$3.handleEvent(AbstractContributionItem.java:482)
                at org.eclipse.swt.widgets.EventTable.sendEvent(EventTable.java:84)
                at org.eclipse.swt.widgets.Display.sendEvent(Display.java:4418)
                at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1079)
                at org.eclipse.swt.widgets.Display.runDeferredEvents(Display.java:4236)
                at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:3824)
                at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine$4.run(PartRenderingEngine.java:1121)
                at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:336)
                at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine.run(PartRenderingEngine.java:1022)
                at org.eclipse.e4.ui.internal.workbench.E4Workbench.createAndRunUI(E4Workbench.java:150)
                at org.eclipse.ui.internal.Workbench$5.run(Workbench.java:693)
                at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:336)
                at org.eclipse.ui.internal.Workbench.createAndRunWorkbench(Workbench.java:610)
                at org.eclipse.ui.PlatformUI.createAndRunWorkbench(PlatformUI.java:148)
                at eu.etaxonomy.taxeditor.Application.start(Application.java:20)
                at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196)
                at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:134)
                at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104)
                at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:388)
                at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:243)
                at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
                at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
                at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
                at java.lang.reflect.Method.invoke(Method.java:498)
                at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:673)
                at org.eclipse.equinox.launcher.Main.basicRun(Main.java:610)
                at org.eclipse.equinox.launcher.Main.run(Main.java:1519)
Caused by: javax.persistence.PersistenceException: org.hibernate.exception.GenericJDBCException: could not execute statement
                at org.hibernate.internal.ExceptionConverterImpl.convert(ExceptionConverterImpl.java:154)
                at org.hibernate.internal.ExceptionConverterImpl.convert(ExceptionConverterImpl.java:181)
                at org.hibernate.internal.ExceptionConverterImpl.convert(ExceptionConverterImpl.java:188)
                at org.hibernate.internal.SessionImpl.doFlush(SessionImpl.java:1366)
                at org.hibernate.internal.SessionImpl.flush(SessionImpl.java:1349)
                at eu.etaxonomy.cdm.persistence.dao.hibernate.common.CdmGenericDaoImpl.findMatching(CdmGenericDaoImpl.java:638)
                at eu.etaxonomy.cdm.persistence.dao.hibernate.common.CdmGenericDaoImpl.findMatching(CdmGenericDaoImpl.java:625)
                at eu.etaxonomy.cdm.api.service.CommonServiceImpl.findMatching(CommonServiceImpl.java:273)
                at sun.reflect.GeneratedMethodAccessor15694.invoke(Unknown Source)
                at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
                at java.lang.reflect.Method.invoke(Method.java:498)
                at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
                at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
                at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
                at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:283)
                at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
                at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
                at com.sun.proxy.$Proxy713.findMatching(Unknown Source)
                at eu.etaxonomy.cdm.api.service.NameServiceImpl.deduplicateTeam(NameServiceImpl.java:1285)
                at eu.etaxonomy.cdm.api.service.NameServiceImpl.deduplicateAuthor(NameServiceImpl.java:1274)
                at eu.etaxonomy.cdm.api.service.NameServiceImpl.parseName(NameServiceImpl.java:1231)
                at sun.reflect.GeneratedMethodAccessor15604.invoke(Unknown Source)
                at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
                at java.lang.reflect.Method.invoke(Method.java:498)
                at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
                at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
                at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
                at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:283)
                at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
                at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
                at com.sun.proxy.$Proxy812.parseName(Unknown Source)
                at sun.reflect.GeneratedMethodAccessor15604.invoke(Unknown Source)
                at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
                at java.lang.reflect.Method.invoke(Method.java:498)
                at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333)
                at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
                at org.springframework.remoting.support.RemoteInvocationTraceInterceptor.invoke(RemoteInvocationTraceInterceptor.java:78)
                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
                at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
                at com.sun.proxy.$Proxy1315.parseName(Unknown Source)
                at sun.reflect.GeneratedMethodAccessor16027.invoke(Unknown Source)
                at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
                at java.lang.reflect.Method.invoke(Method.java:498)
                at org.springframework.remoting.support.RemoteInvocation.invoke(RemoteInvocation.java:212)
                at eu.etaxonomy.cdm.api.remoting.DebuggingRemoteInvocationExecutor.invoke(DebuggingRemoteInvocationExecutor.java:52)
                at org.springframework.remoting.support.RemoteInvocationBasedExporter.invoke(RemoteInvocationBasedExporter.java:78)
                at org.springframework.remoting.support.RemoteInvocationBasedExporter.invokeAndCreateResult(RemoteInvocationBasedExporter.java:114)
                at org.springframework.remoting.httpinvoker.HttpInvokerServiceExporter.handleRequest(HttpInvokerServiceExporter.java:80)
                at org.springframework.web.servlet.mvc.HttpRequestHandlerAdapter.handle(HttpRequestHandlerAdapter.java:51)
                at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:967)
                at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:901)
                at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:970)
                at org.springframework.web.servlet.FrameworkServlet.doPost(FrameworkServlet.java:872)
                at javax.servlet.http.HttpServlet.service(HttpServlet.java:707)
                at org.springframework.web.servlet.FrameworkServlet.service(FrameworkServlet.java:846)
                at javax.servlet.http.HttpServlet.service(HttpServlet.java:790)
                at org.eclipse.jetty.servlet.ServletHolder$NotAsyncServlet.service(ServletHolder.java:1395)
                at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:755)
                at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1617)
                at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:317)
                at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java:127)
                at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.doFilter(FilterSecurityInterceptor.java:91)
                at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
                at org.springframework.security.web.access.ExceptionTranslationFilter.doFilter(ExceptionTranslationFilter.java:114)
                at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
                at org.springframework.security.web.session.SessionManagementFilter.doFilter(SessionManagementFilter.java:137)
                at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
                at org.springframework.security.web.servletapi.SecurityContextHolderAwareRequestFilter.doFilter(SecurityContextHolderAwareRequestFilter.java:170)
                at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
                at org.springframework.security.web.savedrequest.RequestCacheAwareFilter.doFilter(RequestCacheAwareFilter.java:63)
                at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
                at org.springframework.security.web.authentication.www.BasicAuthenticationFilter.doFilterInternal(BasicAuthenticationFilter.java:215)
                at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
                at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
                at org.springframework.security.web.authentication.logout.LogoutFilter.doFilter(LogoutFilter.java:116)
                at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
                at org.springframework.security.web.header.HeaderWriterFilter.doFilterInternal(HeaderWriterFilter.java:66)
                at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
                at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
                at org.springframework.security.web.context.SecurityContextPersistenceFilter.doFilter(SecurityContextPersistenceFilter.java:105)
                at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
                at org.springframework.security.web.context.request.async.WebAsyncManagerIntegrationFilter.doFilterInternal(WebAsyncManagerIntegrationFilter.java:56)
                at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
                at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331)
                at org.springframework.security.web.FilterChainProxy.doFilterInternal(FilterChainProxy.java:214)
                at org.springframework.security.web.FilterChainProxy.doFilter(FilterChainProxy.java:177)
                at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:347)
                at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:263)
                at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1604)
                at eu.etaxonomy.cdm.servlet.DateHeaderFilter.doFilter(DateHeaderFilter.java:56)
                at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1604)
                at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:197)
                at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
                at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1596)
                at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:545)
                at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)
                at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:590)
                at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:127)
                at org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:235)
                at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:1607)
                at org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:233)
                at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1297)
                at org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:188)
                at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:485)
                at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:1577)
                at org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:186)
                at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1212)
                at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
                at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:127)
                at eu.etaxonomy.cdm.server.logging.InstanceLogWrapper.handle(InstanceLogWrapper.java:48)
                at org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:221)
                at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:127)
                at org.eclipse.jetty.server.Server.handle(Server.java:500)
                at org.eclipse.jetty.server.HttpChannel.lambda$handle$1(HttpChannel.java:383)
                at org.eclipse.jetty.server.HttpChannel.dispatch(HttpChannel.java:547)
                at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:375)
                at org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:270)
                at org.eclipse.jetty.io.AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:311)
                at org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:103)
                at org.eclipse.jetty.io.ChannelEndPoint$2.run(ChannelEndPoint.java:117)
                at org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.runTask(EatWhatYouKill.java:336)
                at org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.doProduce(EatWhatYouKill.java:313)
                at org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.tryProduce(EatWhatYouKill.java:171)
                at org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.run(EatWhatYouKill.java:129)
                at org.eclipse.jetty.util.thread.ReservedThreadExecutor$ReservedThread.run(ReservedThreadExecutor.java:388)
                at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:806)
                at org.eclipse.jetty.util.thread.QueuedThreadPool$Runner.run(QueuedThreadPool.java:938)
                at java.lang.Thread.run(Thread.java:748)
                at org.springframework.remoting.support.RemoteInvocationUtils.fillInClientStackTraceIfPossible(RemoteInvocationUtils.java:45)
                at org.springframework.remoting.support.RemoteInvocationResult.recreate(RemoteInvocationResult.java:149)
                at org.springframework.remoting.support.RemoteInvocationBasedAccessor.recreateRemoteInvocationResult(RemoteInvocationBasedAccessor.java:85)
                at org.springframework.remoting.httpinvoker.HttpInvokerClientInterceptor.invoke(HttpInvokerClientInterceptor.java:158)
                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
                at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213)
                at com.sun.proxy.$Proxy88.parseName(Unknown Source)
                at eu.etaxonomy.taxeditor.parser.ParseHandler.parseAndResolveDuplicatesNew(ParseHandler.java:141)
                at eu.etaxonomy.taxeditor.parser.ParseHandler.parseAndResolveDuplicates(ParseHandler.java:121)
                at eu.etaxonomy.taxeditor.editor.name.e4.container.AbstractGroupedContainerE4.persistName(AbstractGroupedContainerE4.java:435)
                at eu.etaxonomy.taxeditor.editor.name.e4.container.AbstractGroupedContainerE4$2.focusLost(AbstractGroupedContainerE4.java:173)
                at org.eclipse.swt.widgets.TypedListener.handleEvent(TypedListener.java:144)
                at org.eclipse.swt.widgets.EventTable.sendEvent(EventTable.java:84)
                at org.eclipse.swt.widgets.Display.sendEvent(Display.java:4418)
                at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1079)
                at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1103)
                at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1084)
                at org.eclipse.swt.widgets.Control.sendFocusEvent(Control.java:2934)
                at org.eclipse.swt.widgets.Widget.wmKillFocus(Widget.java:1961)
                at org.eclipse.swt.widgets.Control.WM_KILLFOCUS(Control.java:5180)
                at org.eclipse.swt.widgets.Canvas.WM_KILLFOCUS(Canvas.java:469)
                at org.eclipse.swt.widgets.Control.windowProc(Control.java:4833)
                at org.eclipse.swt.widgets.Canvas.windowProc(Canvas.java:359)
                at org.eclipse.swt.widgets.Display.windowProc(Display.java:5110)
                at org.eclipse.swt.internal.win32.OS.EnableWindow(Native Method)
                at org.eclipse.swt.widgets.Control.enableWidget(Control.java:986)
                at org.eclipse.swt.widgets.Control.setEnabled(Control.java:3426)
                at eu.etaxonomy.taxeditor.editor.name.e4.container.AbstractGroupedContainerE4.persistName(AbstractGroupedContainerE4.java:431)
                at eu.etaxonomy.taxeditor.editor.name.e4.TaxonNameEditorE4.save(TaxonNameEditorE4.java:396)
                at sun.reflect.GeneratedMethodAccessor127.invoke(Unknown Source)
                at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
                at java.lang.reflect.Method.invoke(Method.java:498)
                at org.eclipse.e4.core.internal.di.MethodRequestor.execute(MethodRequestor.java:55)
                ... 47 more
Caused by: org.hibernate.exception.GenericJDBCException: could not execute statement
                at org.hibernate.exception.internal.StandardSQLExceptionConverter.convert(StandardSQLExceptionConverter.java:47)
                at org.hibernate.engine.jdbc.spi.SqlExceptionHelper.convert(SqlExceptionHelper.java:113)
                at org.hibernate.engine.jdbc.spi.SqlExceptionHelper.convert(SqlExceptionHelper.java:99)
                at org.hibernate.engine.jdbc.internal.ResultSetReturnImpl.executeUpdate(ResultSetReturnImpl.java:200)
                at org.hibernate.persister.collection.BasicCollectionPersister.doUpdateRow(BasicCollectionPersister.java:310)
                at org.hibernate.persister.collection.BasicCollectionPersister.doUpdateRows(BasicCollectionPersister.java:227)
                at org.hibernate.persister.collection.AbstractCollectionPersister.updateRows(AbstractCollectionPersister.java:1754)
                at org.hibernate.action.internal.CollectionUpdateAction.execute(CollectionUpdateAction.java:88)
                at org.hibernate.engine.spi.ActionQueue.executeActions(ActionQueue.java:604)
                at org.hibernate.engine.spi.ActionQueue.lambda$executeActions$1(ActionQueue.java:478)
                at java.util.LinkedHashMap.forEach(LinkedHashMap.java:684)
                at org.hibernate.engine.spi.ActionQueue.executeActions(ActionQueue.java:475)
                at org.hibernate.event.internal.AbstractFlushingEventListener.performExecutions(AbstractFlushingEventListener.java:344)
                at org.hibernate.event.internal.DefaultFlushEventListener.onFlush(DefaultFlushEventListener.java:40)
                at org.hibernate.event.service.internal.EventListenerGroupImpl.fireEventOnEachListener(EventListenerGroupImpl.java:99)
                at org.hibernate.internal.SessionImpl.doFlush(SessionImpl.java:1362)
                ... 209 more
Caused by: java.sql.SQLException: Connection is read-only. Queries leading to data modification are not allowed
                at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:129)
                at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:97)
                at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:89)
                at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:63)
                at com.mysql.cj.jdbc.ClientPreparedStatement.executeUpdateInternal(ClientPreparedStatement.java:1033)
                at com.mysql.cj.jdbc.ClientPreparedStatement.executeUpdateInternal(ClientPreparedStatement.java:1009)
                at com.mysql.cj.jdbc.ClientPreparedStatement.executeLargeUpdate(ClientPreparedStatement.java:1320)
                at com.mysql.cj.jdbc.ClientPreparedStatement.executeUpdate(ClientPreparedStatement.java:994)
                at com.mchange.v2.c3p0.impl.NewProxyPreparedStatement.executeUpdate(NewProxyPreparedStatement.java:384)
                at org.hibernate.engine.jdbc.internal.ResultSetReturnImpl.executeUpdate(ResultSetReturnImpl.java:197)
                ... 221 more

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