bug #10114
closedProblem with parser for author string with whitespace between initials
100%
Description
mail ERS:
irgendetwas stimmt mit dem Parser nicht.
Ich bekomme diese Fehlermeldung, wenn ich lediglich eine Initiale für einen Autor hinzufüge:
Muscari microstomum P. H. Davis & D. Stuart in Lily Year-Book 30: 124. 1966
wird noch geparst.
Richtig ist
Muscari microstomum P. H. Davis & D. C. Stuart in Lily Year-Book 30: 124. 1966
Wenn ich im Freitext-Editor das “C.“ bei Stuart hinzufüge, kommt die Fehlermeldung.
last remote method : https://api.cybertaxonomy.org:443/euromed/remoting/name.service last remote request client time : 2022-08-11T17:41:57.432 last remote request response header time : Thu, 11 Aug 2022 15:41:57 GMT client error time : 2022-08-11T17:41:57.929 login : e.raabstraube editor version : 5.32.0 server : api.cybertaxonomy.org (cybertaxonomy.org) / euromed schema version : 5.32.0.0.20220807 os : Windows 10 10.0 amd64 java : 1.8.0_201 org.eclipse.e4.core.di.InjectionException: javax.persistence.PersistenceException: org.hibernate.exception.GenericJDBCException: could not execute statement at org.eclipse.e4.core.internal.di.MethodRequestor.execute(MethodRequestor.java:65) at org.eclipse.e4.core.internal.di.InjectorImpl.invokeUsingClass(InjectorImpl.java:282) at org.eclipse.e4.core.internal.di.InjectorImpl.invoke(InjectorImpl.java:247) at org.eclipse.e4.core.contexts.ContextInjectionFactory.invoke(ContextInjectionFactory.java:90) at org.eclipse.e4.ui.internal.workbench.PartServiceSaveHandler.save(PartServiceSaveHandler.java:57) at org.eclipse.ui.internal.WorkbenchWindow$7.save(WorkbenchWindow.java:594) at org.eclipse.e4.ui.internal.workbench.PartServiceImpl.savePart(PartServiceImpl.java:1390) at org.eclipse.e4.ui.workbench.renderers.swt.StackRenderer.closePart(StackRenderer.java:1295) at org.eclipse.e4.ui.workbench.renderers.swt.StackRenderer.access$2(StackRenderer.java:1278) at org.eclipse.e4.ui.workbench.renderers.swt.StackRenderer$7.close(StackRenderer.java:1163) at org.eclipse.swt.custom.CTabFolder.onMouse(CTabFolder.java:1930) at org.eclipse.swt.custom.CTabFolder$1.handleEvent(CTabFolder.java:338) at org.eclipse.swt.widgets.EventTable.sendEvent(EventTable.java:84) at org.eclipse.swt.widgets.Display.sendEvent(Display.java:4418) at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1079) at org.eclipse.swt.widgets.Display.runDeferredEvents(Display.java:4236) at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:3824) at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine$4.run(PartRenderingEngine.java:1121) at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:336) at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine.run(PartRenderingEngine.java:1022) at org.eclipse.e4.ui.internal.workbench.E4Workbench.createAndRunUI(E4Workbench.java:150) at org.eclipse.ui.internal.Workbench$5.run(Workbench.java:693) at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:336) at org.eclipse.ui.internal.Workbench.createAndRunWorkbench(Workbench.java:610) at org.eclipse.ui.PlatformUI.createAndRunWorkbench(PlatformUI.java:148) at eu.etaxonomy.taxeditor.Application.start(Application.java:20) at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196) at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:134) at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104) at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:388) at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:243) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source) at java.lang.reflect.Method.invoke(Unknown Source) at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:673) at org.eclipse.equinox.launcher.Main.basicRun(Main.java:610) at org.eclipse.equinox.launcher.Main.run(Main.java:1519) Caused by: javax.persistence.PersistenceException: org.hibernate.exception.GenericJDBCException: could not execute statement at org.hibernate.internal.ExceptionConverterImpl.convert(ExceptionConverterImpl.java:154) at org.hibernate.internal.ExceptionConverterImpl.convert(ExceptionConverterImpl.java:181) at org.hibernate.internal.ExceptionConverterImpl.convert(ExceptionConverterImpl.java:188) at org.hibernate.internal.SessionImpl.doFlush(SessionImpl.java:1366) at org.hibernate.internal.SessionImpl.flush(SessionImpl.java:1349) at eu.etaxonomy.cdm.persistence.dao.hibernate.common.CdmGenericDaoImpl.findMatching(CdmGenericDaoImpl.java:638) at eu.etaxonomy.cdm.persistence.dao.hibernate.common.CdmGenericDaoImpl.findMatching(CdmGenericDaoImpl.java:625) at eu.etaxonomy.cdm.api.service.CommonServiceImpl.findMatching(CommonServiceImpl.java:273) at sun.reflect.GeneratedMethodAccessor24700.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333) at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157) at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99) at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:283) at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179) at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213) at com.sun.proxy.$Proxy2374.findMatching(Unknown Source) at eu.etaxonomy.cdm.api.service.NameServiceImpl.deduplicateTeam(NameServiceImpl.java:1285) at eu.etaxonomy.cdm.api.service.NameServiceImpl.deduplicateAuthor(NameServiceImpl.java:1274) at eu.etaxonomy.cdm.api.service.NameServiceImpl.parseName(NameServiceImpl.java:1231) at sun.reflect.GeneratedMethodAccessor25072.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333) at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157) at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99) at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:283) at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179) at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213) at com.sun.proxy.$Proxy2398.parseName(Unknown Source) at sun.reflect.GeneratedMethodAccessor25072.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333) at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157) at org.springframework.remoting.support.RemoteInvocationTraceInterceptor.invoke(RemoteInvocationTraceInterceptor.java:78) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179) at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213) at com.sun.proxy.$Proxy2509.parseName(Unknown Source) at sun.reflect.GeneratedMethodAccessor91722.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at org.springframework.remoting.support.RemoteInvocation.invoke(RemoteInvocation.java:212) at eu.etaxonomy.cdm.api.remoting.DebuggingRemoteInvocationExecutor.invoke(DebuggingRemoteInvocationExecutor.java:52) at org.springframework.remoting.support.RemoteInvocationBasedExporter.invoke(RemoteInvocationBasedExporter.java:78) at org.springframework.remoting.support.RemoteInvocationBasedExporter.invokeAndCreateResult(RemoteInvocationBasedExporter.java:114) at org.springframework.remoting.httpinvoker.HttpInvokerServiceExporter.handleRequest(HttpInvokerServiceExporter.java:80) at org.springframework.web.servlet.mvc.HttpRequestHandlerAdapter.handle(HttpRequestHandlerAdapter.java:51) at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:967) at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:901) at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:970) at org.springframework.web.servlet.FrameworkServlet.doPost(FrameworkServlet.java:872) at javax.servlet.http.HttpServlet.service(HttpServlet.java:707) at org.springframework.web.servlet.FrameworkServlet.service(FrameworkServlet.java:846) at javax.servlet.http.HttpServlet.service(HttpServlet.java:790) at org.eclipse.jetty.servlet.ServletHolder$NotAsyncServlet.service(ServletHolder.java:1395) at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:755) at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1617) at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:317) at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java:127) at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.doFilter(FilterSecurityInterceptor.java:91) at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331) at org.springframework.security.web.access.ExceptionTranslationFilter.doFilter(ExceptionTranslationFilter.java:114) at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331) at org.springframework.security.web.session.SessionManagementFilter.doFilter(SessionManagementFilter.java:137) at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331) at org.springframework.security.web.servletapi.SecurityContextHolderAwareRequestFilter.doFilter(SecurityContextHolderAwareRequestFilter.java:170) at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331) at org.springframework.security.web.savedrequest.RequestCacheAwareFilter.doFilter(RequestCacheAwareFilter.java:63) at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331) at org.springframework.security.web.authentication.www.BasicAuthenticationFilter.doFilterInternal(BasicAuthenticationFilter.java:215) at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107) at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331) at org.springframework.security.web.authentication.logout.LogoutFilter.doFilter(LogoutFilter.java:116) at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331) at org.springframework.security.web.header.HeaderWriterFilter.doFilterInternal(HeaderWriterFilter.java:66) at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107) at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331) at org.springframework.security.web.context.SecurityContextPersistenceFilter.doFilter(SecurityContextPersistenceFilter.java:105) at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331) at org.springframework.security.web.context.request.async.WebAsyncManagerIntegrationFilter.doFilterInternal(WebAsyncManagerIntegrationFilter.java:56) at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107) at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331) at org.springframework.security.web.FilterChainProxy.doFilterInternal(FilterChainProxy.java:214) at org.springframework.security.web.FilterChainProxy.doFilter(FilterChainProxy.java:177) at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:347) at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:263) at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1604) at eu.etaxonomy.cdm.servlet.DateHeaderFilter.doFilter(DateHeaderFilter.java:56) at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1604) at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:197) at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107) at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1596) at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:545) at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143) at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:590) at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:127) at org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:235) at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:1607) at org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:233) at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1297) at org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:188) at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:485) at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:1577) at org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:186) at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1212) at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141) at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:127) at eu.etaxonomy.cdm.server.logging.InstanceLogWrapper.handle(InstanceLogWrapper.java:48) at org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:221) at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:127) at org.eclipse.jetty.server.Server.handle(Server.java:500) at org.eclipse.jetty.server.HttpChannel.lambda$handle$1(HttpChannel.java:383) at org.eclipse.jetty.server.HttpChannel.dispatch(HttpChannel.java:547) at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:375) at org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:270) at org.eclipse.jetty.io.AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:311) at org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:103) at org.eclipse.jetty.io.ChannelEndPoint$2.run(ChannelEndPoint.java:117) at org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.runTask(EatWhatYouKill.java:336) at org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.doProduce(EatWhatYouKill.java:313) at org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.tryProduce(EatWhatYouKill.java:171) at org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.run(EatWhatYouKill.java:129) at org.eclipse.jetty.util.thread.ReservedThreadExecutor$ReservedThread.run(ReservedThreadExecutor.java:388) at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:806) at org.eclipse.jetty.util.thread.QueuedThreadPool$Runner.run(QueuedThreadPool.java:938) at java.lang.Thread.run(Thread.java:748) at org.springframework.remoting.support.RemoteInvocationUtils.fillInClientStackTraceIfPossible(RemoteInvocationUtils.java:45) at org.springframework.remoting.support.RemoteInvocationResult.recreate(RemoteInvocationResult.java:149) at org.springframework.remoting.support.RemoteInvocationBasedAccessor.recreateRemoteInvocationResult(RemoteInvocationBasedAccessor.java:85) at org.springframework.remoting.httpinvoker.HttpInvokerClientInterceptor.invoke(HttpInvokerClientInterceptor.java:158) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179) at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213) at com.sun.proxy.$Proxy122.parseName(Unknown Source) at eu.etaxonomy.taxeditor.parser.ParseHandler.parseAndResolveDuplicatesNew(ParseHandler.java:141) at eu.etaxonomy.taxeditor.parser.ParseHandler.parseAndResolveDuplicates(ParseHandler.java:121) at eu.etaxonomy.taxeditor.editor.name.e4.container.AbstractGroupedContainerE4.persistName(AbstractGroupedContainerE4.java:435) at eu.etaxonomy.taxeditor.editor.name.e4.TaxonNameEditorE4.save(TaxonNameEditorE4.java:396) at sun.reflect.GeneratedMethodAccessor144.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source) at java.lang.reflect.Method.invoke(Unknown Source) at org.eclipse.e4.core.internal.di.MethodRequestor.execute(MethodRequestor.java:55) ... 37 more Caused by: org.hibernate.exception.GenericJDBCException: could not execute statement at org.hibernate.exception.internal.StandardSQLExceptionConverter.convert(StandardSQLExceptionConverter.java:47) at org.hibernate.engine.jdbc.spi.SqlExceptionHelper.convert(SqlExceptionHelper.java:113) at org.hibernate.engine.jdbc.spi.SqlExceptionHelper.convert(SqlExceptionHelper.java:99) at org.hibernate.engine.jdbc.internal.ResultSetReturnImpl.executeUpdate(ResultSetReturnImpl.java:200) at org.hibernate.persister.collection.BasicCollectionPersister.doUpdateRow(BasicCollectionPersister.java:310) at org.hibernate.persister.collection.BasicCollectionPersister.doUpdateRows(BasicCollectionPersister.java:227) at org.hibernate.persister.collection.AbstractCollectionPersister.updateRows(AbstractCollectionPersister.java:1754) at org.hibernate.action.internal.CollectionUpdateAction.execute(CollectionUpdateAction.java:88) at org.hibernate.engine.spi.ActionQueue.executeActions(ActionQueue.java:604) at org.hibernate.engine.spi.ActionQueue.lambda$executeActions$1(ActionQueue.java:478) at java.util.LinkedHashMap.forEach(LinkedHashMap.java:684) at org.hibernate.engine.spi.ActionQueue.executeActions(ActionQueue.java:475) at org.hibernate.event.internal.AbstractFlushingEventListener.performExecutions(AbstractFlushingEventListener.java:344) at org.hibernate.event.internal.DefaultFlushEventListener.onFlush(DefaultFlushEventListener.java:40) at org.hibernate.event.service.internal.EventListenerGroupImpl.fireEventOnEachListener(EventListenerGroupImpl.java:99) at org.hibernate.internal.SessionImpl.doFlush(SessionImpl.java:1362) ... 181 more Caused by: java.sql.SQLException: Connection is read-only. Queries leading to data modification are not allowed at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:129) at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:97) at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:89) at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:63) at com.mysql.cj.jdbc.ClientPreparedStatement.executeUpdateInternal(ClientPreparedStatement.java:1033) at com.mysql.cj.jdbc.ClientPreparedStatement.executeUpdateInternal(ClientPreparedStatement.java:1009) at com.mysql.cj.jdbc.ClientPreparedStatement.executeLargeUpdate(ClientPreparedStatement.java:1320) at com.mysql.cj.jdbc.ClientPreparedStatement.executeUpdate(ClientPreparedStatement.java:994) at com.mchange.v2.c3p0.impl.NewProxyPreparedStatement.executeUpdate(NewProxyPreparedStatement.java:384) at org.hibernate.engine.jdbc.internal.ResultSetReturnImpl.executeUpdate(ResultSetReturnImpl.java:197) ... 193 more
Related issues
Updated by Katja Luther about 2 years ago
The exception appears while session.flush() before starting search for matching persons in CdmGenericDaoImpl (line 638)
Updated by Katja Luther about 2 years ago
This exception also appears when trying to update sortindex in caryo_amaranthaceae.
Updated by Andreas Müller about 2 years ago
ERS:
danke für das Ticket. Dabei ist zu beachten, dass dieser Fehler durchaus nicht immer auftritt, sondern sogar eher selten. Ich gebe öfter Initialen so mit Leerzeichen ein, und dies ist das erste Mal, dass der Fehler kommt. Wovon das abhängt, ist mir unklar. Vielleicht ist bei genau diesem String noch etwas anderes falsch.
Updated by Andreas Müller about 2 years ago
- Status changed from New to In Progress
- Priority changed from New to Highest
- Target version changed from Release 5.49 to Release 5.33
- Severity changed from normal to blocker
This should have highest priority.
Updated by Andreas Müller about 2 years ago
- Related to task #10067: Update to hibernate 5.4 (or higher) and hibernate search 5.11 and lucene 5.5 added
Updated by Andreas Müller about 2 years ago
ERS:
ich hatte jetzt die Autoreninitialen vorläufig als D.C. ohne Leerzeichen eingetragen. Es genügt, das Leerzeichen zwischen D. und C. hinzuzufügen, um wieder den Fehler zu produzieren. Vielleicht hilft euch das ja bei der Lösung.
Updated by Andreas Müller almost 2 years ago
- Status changed from In Progress to Feedback
Updated by Andreas Müller almost 2 years ago
KL:
in der Methode CdmGenericDaoImpl.findMatching() in Zeile 635 wird als erstes ein flush() aufgerufen, wenn man das raus nimmt, dann kommt der Fehler nicht. Ist nur die Frage, warum das in diesem einen Fall zu Problemen führt.
AM:
... zur Frage, warum das nur hier passiert. Ich nehme an, dass da versucht wird einen titleCache zu updaten. Anders als bei allen anderen DBs wurden die titleCaches bei E+M noch nicht allgemein geupdated, da zu viele um es aus dem Editor heraus zu machen. Muss ich mal von Commandline aus machen. Das reduziert das Problem aber natürlich nur und behebt es nicht. Aber vielleicht kannst du ja auch genauer sehen, was da wirklich versucht wird zu verändern an den Daten.
Updated by Andreas Müller almost 2 years ago
- Status changed from Feedback to Resolved
- % Done changed from 0 to 70
Applied in changeset cdmlib|25e433f2a4b506913253961cfea7a931b11afa1b.
Updated by Andreas Müller almost 2 years ago
- Assignee changed from Andreas Müller to Katja Luther
This is hopefully fixed. Can you please review?
Updated by Andreas Müller almost 2 years ago
Katja Luther wrote in #note-2:
This exception also appears when trying to update sortindex in caryo_amaranthaceae.
Please also check if this is solved with this fix. It might be another method that is read-only here and also needs to be adapted.
Updated by Katja Luther almost 2 years ago
Andreas Müller wrote in #note-11:
Katja Luther wrote in #note-2:
This exception also appears when trying to update sortindex in caryo_amaranthaceae.
Please also check if this is solved with this fix. It might be another method that is read-only here and also needs to be adapted.
here we still get the exception.
14:31:53.959 [Thread-21] ERROR org.hibernate.engine.jdbc.spi.SqlExceptionHelper - Connection is read-only. Queries leading to data modification are not allowed
But I do not have the stacktrace and no exception pops up in the editor???
Updated by Katja Luther almost 2 years ago
Another appearance from Nadja:
ich bekomme diese Fehlermeldung wenn ich ganz normal eine nomenklatorische Referenz eingeben will
Taxon Mcneillia stellata
last remote method : https://api.cybertaxonomy.org:443/caryophyllales_spp/remoting/name.service last remote request client time : 2022-08-23T16:55:51.918 last remote request response header time : Tue, 23 Aug 2022 14:55:51 GMT client error time : 2022-08-23T16:55:52.364 login : n.korotkova editor version : 5.32.0 server : api.cybertaxonomy.org (cybertaxonomy.org) / caryophyllales_spp schema version : 5.32.0.0.20220807 os : Windows 10 10.0 amd64 java : 1.8.0_121 org.eclipse.e4.core.di.InjectionException: javax.persistence.PersistenceException: org.hibernate.exception.GenericJDBCException: could not execute statement at org.eclipse.e4.core.internal.di.MethodRequestor.execute(MethodRequestor.java:65) at org.eclipse.e4.core.internal.di.InjectorImpl.invokeUsingClass(InjectorImpl.java:282) at org.eclipse.e4.core.internal.di.InjectorImpl.invoke(InjectorImpl.java:247) at org.eclipse.e4.core.contexts.ContextInjectionFactory.invoke(ContextInjectionFactory.java:90) at org.eclipse.e4.ui.internal.workbench.PartServiceSaveHandler.save(PartServiceSaveHandler.java:57) at org.eclipse.ui.internal.WorkbenchWindow$7.save(WorkbenchWindow.java:594) at org.eclipse.e4.ui.internal.workbench.PartServiceImpl.savePart(PartServiceImpl.java:1390) at eu.etaxonomy.taxeditor.workbench.SaveHandler.execute(SaveHandler.java:38) at sun.reflect.GeneratedMethodAccessor126.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at org.eclipse.e4.core.internal.di.MethodRequestor.execute(MethodRequestor.java:55) at org.eclipse.e4.core.internal.di.InjectorImpl.invokeUsingClass(InjectorImpl.java:282) at org.eclipse.e4.core.internal.di.InjectorImpl.invoke(InjectorImpl.java:264) at org.eclipse.e4.core.contexts.ContextInjectionFactory.invoke(ContextInjectionFactory.java:132) at org.eclipse.e4.core.commands.internal.HandlerServiceHandler.execute(HandlerServiceHandler.java:152) at org.eclipse.core.commands.Command.executeWithChecks(Command.java:494) at org.eclipse.core.commands.ParameterizedCommand.executeWithChecks(ParameterizedCommand.java:488) at org.eclipse.e4.core.commands.internal.HandlerServiceImpl.executeHandler(HandlerServiceImpl.java:210) at org.eclipse.e4.ui.workbench.renderers.swt.HandledContributionItem.executeItem(HandledContributionItem.java:433) at org.eclipse.e4.ui.workbench.renderers.swt.AbstractContributionItem.handleWidgetSelection(AbstractContributionItem.java:454) at org.eclipse.e4.ui.workbench.renderers.swt.AbstractContributionItem$3.handleEvent(AbstractContributionItem.java:482) at org.eclipse.swt.widgets.EventTable.sendEvent(EventTable.java:84) at org.eclipse.swt.widgets.Display.sendEvent(Display.java:4418) at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1079) at org.eclipse.swt.widgets.Display.runDeferredEvents(Display.java:4236) at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:3824) at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine$4.run(PartRenderingEngine.java:1121) at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:336) at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine.run(PartRenderingEngine.java:1022) at org.eclipse.e4.ui.internal.workbench.E4Workbench.createAndRunUI(E4Workbench.java:150) at org.eclipse.ui.internal.Workbench$5.run(Workbench.java:693) at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:336) at org.eclipse.ui.internal.Workbench.createAndRunWorkbench(Workbench.java:610) at org.eclipse.ui.PlatformUI.createAndRunWorkbench(PlatformUI.java:148) at eu.etaxonomy.taxeditor.Application.start(Application.java:20) at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196) at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:134) at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104) at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:388) at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:243) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:673) at org.eclipse.equinox.launcher.Main.basicRun(Main.java:610) at org.eclipse.equinox.launcher.Main.run(Main.java:1519) Caused by: javax.persistence.PersistenceException: org.hibernate.exception.GenericJDBCException: could not execute statement at org.hibernate.internal.ExceptionConverterImpl.convert(ExceptionConverterImpl.java:154) at org.hibernate.internal.ExceptionConverterImpl.convert(ExceptionConverterImpl.java:181) at org.hibernate.internal.ExceptionConverterImpl.convert(ExceptionConverterImpl.java:188) at org.hibernate.internal.SessionImpl.doFlush(SessionImpl.java:1366) at org.hibernate.internal.SessionImpl.flush(SessionImpl.java:1349) at eu.etaxonomy.cdm.persistence.dao.hibernate.common.CdmGenericDaoImpl.findMatching(CdmGenericDaoImpl.java:638) at eu.etaxonomy.cdm.persistence.dao.hibernate.common.CdmGenericDaoImpl.findMatching(CdmGenericDaoImpl.java:625) at eu.etaxonomy.cdm.api.service.CommonServiceImpl.findMatching(CommonServiceImpl.java:273) at sun.reflect.GeneratedMethodAccessor15694.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333) at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157) at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99) at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:283) at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179) at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213) at com.sun.proxy.$Proxy713.findMatching(Unknown Source) at eu.etaxonomy.cdm.api.service.NameServiceImpl.deduplicateTeam(NameServiceImpl.java:1285) at eu.etaxonomy.cdm.api.service.NameServiceImpl.deduplicateAuthor(NameServiceImpl.java:1274) at eu.etaxonomy.cdm.api.service.NameServiceImpl.parseName(NameServiceImpl.java:1231) at sun.reflect.GeneratedMethodAccessor15604.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333) at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157) at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99) at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:283) at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179) at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213) at com.sun.proxy.$Proxy812.parseName(Unknown Source) at sun.reflect.GeneratedMethodAccessor15604.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:333) at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157) at org.springframework.remoting.support.RemoteInvocationTraceInterceptor.invoke(RemoteInvocationTraceInterceptor.java:78) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179) at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213) at com.sun.proxy.$Proxy1315.parseName(Unknown Source) at sun.reflect.GeneratedMethodAccessor16027.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at org.springframework.remoting.support.RemoteInvocation.invoke(RemoteInvocation.java:212) at eu.etaxonomy.cdm.api.remoting.DebuggingRemoteInvocationExecutor.invoke(DebuggingRemoteInvocationExecutor.java:52) at org.springframework.remoting.support.RemoteInvocationBasedExporter.invoke(RemoteInvocationBasedExporter.java:78) at org.springframework.remoting.support.RemoteInvocationBasedExporter.invokeAndCreateResult(RemoteInvocationBasedExporter.java:114) at org.springframework.remoting.httpinvoker.HttpInvokerServiceExporter.handleRequest(HttpInvokerServiceExporter.java:80) at org.springframework.web.servlet.mvc.HttpRequestHandlerAdapter.handle(HttpRequestHandlerAdapter.java:51) at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:967) at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:901) at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:970) at org.springframework.web.servlet.FrameworkServlet.doPost(FrameworkServlet.java:872) at javax.servlet.http.HttpServlet.service(HttpServlet.java:707) at org.springframework.web.servlet.FrameworkServlet.service(FrameworkServlet.java:846) at javax.servlet.http.HttpServlet.service(HttpServlet.java:790) at org.eclipse.jetty.servlet.ServletHolder$NotAsyncServlet.service(ServletHolder.java:1395) at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:755) at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1617) at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:317) at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java:127) at org.springframework.security.web.access.intercept.FilterSecurityInterceptor.doFilter(FilterSecurityInterceptor.java:91) at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331) at org.springframework.security.web.access.ExceptionTranslationFilter.doFilter(ExceptionTranslationFilter.java:114) at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331) at org.springframework.security.web.session.SessionManagementFilter.doFilter(SessionManagementFilter.java:137) at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331) at org.springframework.security.web.servletapi.SecurityContextHolderAwareRequestFilter.doFilter(SecurityContextHolderAwareRequestFilter.java:170) at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331) at org.springframework.security.web.savedrequest.RequestCacheAwareFilter.doFilter(RequestCacheAwareFilter.java:63) at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331) at org.springframework.security.web.authentication.www.BasicAuthenticationFilter.doFilterInternal(BasicAuthenticationFilter.java:215) at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107) at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331) at org.springframework.security.web.authentication.logout.LogoutFilter.doFilter(LogoutFilter.java:116) at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331) at org.springframework.security.web.header.HeaderWriterFilter.doFilterInternal(HeaderWriterFilter.java:66) at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107) at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331) at org.springframework.security.web.context.SecurityContextPersistenceFilter.doFilter(SecurityContextPersistenceFilter.java:105) at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331) at org.springframework.security.web.context.request.async.WebAsyncManagerIntegrationFilter.doFilterInternal(WebAsyncManagerIntegrationFilter.java:56) at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107) at org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:331) at org.springframework.security.web.FilterChainProxy.doFilterInternal(FilterChainProxy.java:214) at org.springframework.security.web.FilterChainProxy.doFilter(FilterChainProxy.java:177) at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:347) at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:263) at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1604) at eu.etaxonomy.cdm.servlet.DateHeaderFilter.doFilter(DateHeaderFilter.java:56) at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1604) at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:197) at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107) at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1596) at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:545) at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143) at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:590) at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:127) at org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:235) at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:1607) at org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:233) at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1297) at org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:188) at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:485) at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:1577) at org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:186) at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1212) at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141) at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:127) at eu.etaxonomy.cdm.server.logging.InstanceLogWrapper.handle(InstanceLogWrapper.java:48) at org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:221) at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:127) at org.eclipse.jetty.server.Server.handle(Server.java:500) at org.eclipse.jetty.server.HttpChannel.lambda$handle$1(HttpChannel.java:383) at org.eclipse.jetty.server.HttpChannel.dispatch(HttpChannel.java:547) at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:375) at org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:270) at org.eclipse.jetty.io.AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:311) at org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:103) at org.eclipse.jetty.io.ChannelEndPoint$2.run(ChannelEndPoint.java:117) at org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.runTask(EatWhatYouKill.java:336) at org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.doProduce(EatWhatYouKill.java:313) at org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.tryProduce(EatWhatYouKill.java:171) at org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.run(EatWhatYouKill.java:129) at org.eclipse.jetty.util.thread.ReservedThreadExecutor$ReservedThread.run(ReservedThreadExecutor.java:388) at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:806) at org.eclipse.jetty.util.thread.QueuedThreadPool$Runner.run(QueuedThreadPool.java:938) at java.lang.Thread.run(Thread.java:748) at org.springframework.remoting.support.RemoteInvocationUtils.fillInClientStackTraceIfPossible(RemoteInvocationUtils.java:45) at org.springframework.remoting.support.RemoteInvocationResult.recreate(RemoteInvocationResult.java:149) at org.springframework.remoting.support.RemoteInvocationBasedAccessor.recreateRemoteInvocationResult(RemoteInvocationBasedAccessor.java:85) at org.springframework.remoting.httpinvoker.HttpInvokerClientInterceptor.invoke(HttpInvokerClientInterceptor.java:158) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179) at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:213) at com.sun.proxy.$Proxy88.parseName(Unknown Source) at eu.etaxonomy.taxeditor.parser.ParseHandler.parseAndResolveDuplicatesNew(ParseHandler.java:141) at eu.etaxonomy.taxeditor.parser.ParseHandler.parseAndResolveDuplicates(ParseHandler.java:121) at eu.etaxonomy.taxeditor.editor.name.e4.container.AbstractGroupedContainerE4.persistName(AbstractGroupedContainerE4.java:435) at eu.etaxonomy.taxeditor.editor.name.e4.container.AbstractGroupedContainerE4$2.focusLost(AbstractGroupedContainerE4.java:173) at org.eclipse.swt.widgets.TypedListener.handleEvent(TypedListener.java:144) at org.eclipse.swt.widgets.EventTable.sendEvent(EventTable.java:84) at org.eclipse.swt.widgets.Display.sendEvent(Display.java:4418) at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1079) at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1103) at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1084) at org.eclipse.swt.widgets.Control.sendFocusEvent(Control.java:2934) at org.eclipse.swt.widgets.Widget.wmKillFocus(Widget.java:1961) at org.eclipse.swt.widgets.Control.WM_KILLFOCUS(Control.java:5180) at org.eclipse.swt.widgets.Canvas.WM_KILLFOCUS(Canvas.java:469) at org.eclipse.swt.widgets.Control.windowProc(Control.java:4833) at org.eclipse.swt.widgets.Canvas.windowProc(Canvas.java:359) at org.eclipse.swt.widgets.Display.windowProc(Display.java:5110) at org.eclipse.swt.internal.win32.OS.EnableWindow(Native Method) at org.eclipse.swt.widgets.Control.enableWidget(Control.java:986) at org.eclipse.swt.widgets.Control.setEnabled(Control.java:3426) at eu.etaxonomy.taxeditor.editor.name.e4.container.AbstractGroupedContainerE4.persistName(AbstractGroupedContainerE4.java:431) at eu.etaxonomy.taxeditor.editor.name.e4.TaxonNameEditorE4.save(TaxonNameEditorE4.java:396) at sun.reflect.GeneratedMethodAccessor127.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at org.eclipse.e4.core.internal.di.MethodRequestor.execute(MethodRequestor.java:55) ... 47 more Caused by: org.hibernate.exception.GenericJDBCException: could not execute statement at org.hibernate.exception.internal.StandardSQLExceptionConverter.convert(StandardSQLExceptionConverter.java:47) at org.hibernate.engine.jdbc.spi.SqlExceptionHelper.convert(SqlExceptionHelper.java:113) at org.hibernate.engine.jdbc.spi.SqlExceptionHelper.convert(SqlExceptionHelper.java:99) at org.hibernate.engine.jdbc.internal.ResultSetReturnImpl.executeUpdate(ResultSetReturnImpl.java:200) at org.hibernate.persister.collection.BasicCollectionPersister.doUpdateRow(BasicCollectionPersister.java:310) at org.hibernate.persister.collection.BasicCollectionPersister.doUpdateRows(BasicCollectionPersister.java:227) at org.hibernate.persister.collection.AbstractCollectionPersister.updateRows(AbstractCollectionPersister.java:1754) at org.hibernate.action.internal.CollectionUpdateAction.execute(CollectionUpdateAction.java:88) at org.hibernate.engine.spi.ActionQueue.executeActions(ActionQueue.java:604) at org.hibernate.engine.spi.ActionQueue.lambda$executeActions$1(ActionQueue.java:478) at java.util.LinkedHashMap.forEach(LinkedHashMap.java:684) at org.hibernate.engine.spi.ActionQueue.executeActions(ActionQueue.java:475) at org.hibernate.event.internal.AbstractFlushingEventListener.performExecutions(AbstractFlushingEventListener.java:344) at org.hibernate.event.internal.DefaultFlushEventListener.onFlush(DefaultFlushEventListener.java:40) at org.hibernate.event.service.internal.EventListenerGroupImpl.fireEventOnEachListener(EventListenerGroupImpl.java:99) at org.hibernate.internal.SessionImpl.doFlush(SessionImpl.java:1362) ... 209 more Caused by: java.sql.SQLException: Connection is read-only. Queries leading to data modification are not allowed at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:129) at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:97) at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:89) at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:63) at com.mysql.cj.jdbc.ClientPreparedStatement.executeUpdateInternal(ClientPreparedStatement.java:1033) at com.mysql.cj.jdbc.ClientPreparedStatement.executeUpdateInternal(ClientPreparedStatement.java:1009) at com.mysql.cj.jdbc.ClientPreparedStatement.executeLargeUpdate(ClientPreparedStatement.java:1320) at com.mysql.cj.jdbc.ClientPreparedStatement.executeUpdate(ClientPreparedStatement.java:994) at com.mchange.v2.c3p0.impl.NewProxyPreparedStatement.executeUpdate(NewProxyPreparedStatement.java:384) at org.hibernate.engine.jdbc.internal.ResultSetReturnImpl.executeUpdate(ResultSetReturnImpl.java:197) ... 221 more
Updated by Katja Luther almost 2 years ago
The nomenclatural reference problem seems to be solved, I could not reproduce it anymore.
Updated by Katja Luther almost 2 years ago
- Status changed from Resolved to Feedback
- Assignee changed from Katja Luther to Andreas Müller
Problems with the parsing of names seem to be solved. The problem with the sortindex updater still exist.
Updated by Katja Luther almost 2 years ago
- Status changed from Feedback to Resolved
Katja Luther wrote in #note-15:
Problems with the parsing of names seem to be solved. The problem with the sortindex updater still exist.
This problem should be fixed with the last commit. Please review.
Updated by Andreas Müller almost 2 years ago
- Status changed from Resolved to Closed
- % Done changed from 70 to 100
Also the sortindex updater works as expected now.