Project

General

Profile

bug #8533 » tissue_sample.xml

Patrick Plitzner, 09/30/2019 01:41 PM

 
1
<?xml version='1.0' encoding='UTF-8'?>
2
<biocase:response xmlns:abcd="http://www.tdwg.org/schemas/abcd/2.06" xmlns:biocase="http://www.biocase.org/schemas/protocol/1.3" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.biocase.org/schemas/protocol/1.3 http://www.bgbm.org/biodivinf/schema/protocol_1_31.xsd http://www.tdwg.org/schemas/abcd/2.06 http://rs.tdwg.org/abcd/2.06/ABCD_2.06.xsd">
3
  <!--XML generated by BioCASE PyWrapper software version 3.7.2. Made in Berlin.-->
4
  <biocase:header>
5
    <biocase:version software="os">nt</biocase:version>
6
    <biocase:version software="python">2.7.14 (v2.7.14:84471935ed, Sep 16 2017, 20:25:58) [MSC v.1500 64 bit (AMD64)]</biocase:version>
7
    <biocase:version software="pywrapper">3.7.2</biocase:version>
8
    <biocase:version software="dbmod">MS SQL Server module using pyODBC v4.0.23</biocase:version>
9
    <biocase:sendTime>2019-09-30T13:32:27.117000</biocase:sendTime>
10
    <biocase:source>Herbar_BinHum@ww3.bgbm.org</biocase:source>
11
    <biocase:destination>130.133.69.2</biocase:destination>
12
    <biocase:type>search</biocase:type>
13
  </biocase:header>
14
  <biocase:content recordCount="1" recordDropped="0" recordStart="0" totalSearchHits="1">
15
    <abcd:DataSets>
16
      <abcd:DataSet>
17
        <abcd:TechnicalContacts>
18
          <abcd:TechnicalContact>
19
            <abcd:Name>Botanic Garden and Botanical Museum Berlin</abcd:Name>
20
            <abcd:Email>biodiversitydata@bgbm.org</abcd:Email>
21
            <abcd:Address>Königin-Luise-Str. 6-8, 14195 Berlin, Germany</abcd:Address>
22
          </abcd:TechnicalContact>
23
        </abcd:TechnicalContacts>
24
        <abcd:ContentContacts>
25
          <abcd:ContentContact>
26
            <abcd:Name>Botanic Garden and Botanical Museum Berlin</abcd:Name>
27
            <abcd:Email>biodiversitydata@bgbm.org</abcd:Email>
28
            <abcd:Address>Königin-Luise-Str. 6-8, 14195 Berlin, Germany</abcd:Address>
29
          </abcd:ContentContact>
30
        </abcd:ContentContacts>
31
        <abcd:Metadata>
32
          <abcd:Description>
33
            <abcd:Representation language="en">
34
              <abcd:Title>Herbarium Berolinense</abcd:Title>
35
              <abcd:Details>The herbarium of the Botanic Garden and Botanical Museum Berlin-Dahlem (herbarium acronym: B) is the largest in Germany and holds a collection of more than 3.5 million preserved specimens. All plant groups – flowering plants, ferns, mosses, liverworts, and algae, as well as fungi and lichens – are represented in the collections which are worldwide in scope. Associated with the general herbarium are special collections of dried fruits and seeds, wood samples, and specimens preserved in alcohol. The collections of the herbarium are growing constantly through field research conducted by staff, and through gifts, acquisitions, and exchanges of specimens from other herbaria</abcd:Details>
36
            </abcd:Representation>
37
          </abcd:Description>
38
          <abcd:IconURI>http://ww3.bgbm.org/providerResources/BGBM.jpg</abcd:IconURI>
39
          <abcd:RevisionData>
40
            <abcd:Creators>Herbarium Berolinense</abcd:Creators>
41
            <abcd:DateCreated>2003-06-01T00:00:00</abcd:DateCreated>
42
            <abcd:DateModified>2016-06-14T10:42:00</abcd:DateModified>
43
          </abcd:RevisionData>
44
          <abcd:Owners>
45
            <abcd:Owner>
46
              <abcd:Organisation>
47
                <abcd:Name>
48
                  <abcd:Representation language="en">
49
                    <abcd:Text>Botanic Garden and Botanical Museum Berlin</abcd:Text>
50
                    <abcd:Abbreviation>BGBM</abcd:Abbreviation>
51
                  </abcd:Representation>
52
                </abcd:Name>
53
              </abcd:Organisation>
54
              <abcd:Addresses>
55
                <abcd:Address>Königin-Luise-Str. 6-8, 14195 Berlin, Germany</abcd:Address>
56
              </abcd:Addresses>
57
              <abcd:EmailAddresses>
58
                <abcd:EmailAddress>biodiversitydata@bgbm.org</abcd:EmailAddress>
59
              </abcd:EmailAddresses>
60
              <abcd:URIs>
61
                <abcd:URL>http://www.bgbm.org</abcd:URL>
62
              </abcd:URIs>
63
            </abcd:Owner>
64
          </abcd:Owners>
65
          <abcd:IPRStatements>
66
            <abcd:TermsOfUseStatements>
67
              <abcd:TermsOfUse language="en">
68
                <abcd:Text>Textual metadata on specimens from the Herbarium Berolinense (B) are released under the Creative Commons 1.0 Public Domain Dedication waiver [http://creativecommons.org/publicdomain/zero/1.0/].</abcd:Text>
69
              </abcd:TermsOfUse>
70
            </abcd:TermsOfUseStatements>
71
            <abcd:Citations>
72
              <abcd:Citation language="en">
73
                <abcd:Text>Röpert D. (ed.) 2000+ [continuously updated]: Digital specimen images at the Herbarium Berolinense. - Published at http://ww2.bgbm.org/herbarium/default.cfm [accessed dd Mmm yyyy].     For reference to a specimen cite the stable identifier as shown on the specimen detail page   (e.g. http://herbarium.bgbm.org/object/B200072053).     For reference to an individual image, cite the barcode of the specimen as well as the image ID as shown on the image detail page.</abcd:Text>
74
              </abcd:Citation>
75
            </abcd:Citations>
76
          </abcd:IPRStatements>
77
        </abcd:Metadata>
78
        <abcd:Units>
79
          <abcd:Unit>
80
            <abcd:UnitGUID>http://herbarium.bgbm.org/object/BGT0023612</abcd:UnitGUID>
81
            <abcd:SourceInstitutionID>B</abcd:SourceInstitutionID>
82
            <abcd:SourceID>Herbarium Berolinense</abcd:SourceID>
83
            <abcd:UnitID>B GT 0023612</abcd:UnitID>
84
            <abcd:Identifications>
85
              <abcd:Identification>
86
                <abcd:Result>
87
                  <abcd:TaxonIdentified>
88
                    <abcd:HigherTaxa>
89
                      <abcd:HigherTaxon>
90
                        <abcd:HigherTaxonName>CACTACEAE</abcd:HigherTaxonName>
91
                        <abcd:HigherTaxonRank>familia</abcd:HigherTaxonRank>
92
                      </abcd:HigherTaxon>
93
                    </abcd:HigherTaxa>
94
                    <abcd:ScientificName>
95
                      <abcd:FullScientificNameString>Selenicereus dorschianus Ralf Bauer</abcd:FullScientificNameString>
96
                      <abcd:NameAtomised>
97
                        <abcd:Botanical>
98
                          <abcd:GenusOrMonomial>Selenicereus</abcd:GenusOrMonomial>
99
                          <abcd:FirstEpithet>dorschianus</abcd:FirstEpithet>
100
                          <abcd:AuthorTeam>Ralf Bauer</abcd:AuthorTeam>
101
                        </abcd:Botanical>
102
                      </abcd:NameAtomised>
103
                    </abcd:ScientificName>
104
                  </abcd:TaxonIdentified>
105
                </abcd:Result>
106
                <abcd:PreferredFlag>1</abcd:PreferredFlag>
107
              </abcd:Identification>
108
            </abcd:Identifications>
109
            <abcd:RecordBasis>PreservedSpecimen</abcd:RecordBasis>
110
            <abcd:KindOfUnit>tissue</abcd:KindOfUnit>
111
            <abcd:Gathering>
112
              <abcd:DateTime>
113
                <abcd:DateText>04.02.2001</abcd:DateText>
114
              </abcd:DateTime>
115
              <abcd:Agents>
116
                <abcd:GatheringAgentsText>Lautner</abcd:GatheringAgentsText>
117
              </abcd:Agents>
118
              <abcd:LocalityText>Jalisco. zwischen Conception de Buenas Aires und Union de Guadelupe an der Jal 410.</abcd:LocalityText>
119
              <abcd:Country>
120
                <abcd:Name>Mexico</abcd:Name>
121
                <abcd:ISO3166Code>MX</abcd:ISO3166Code>
122
              </abcd:Country>
123
              <abcd:NamedAreas>
124
                <abcd:NamedArea>
125
                  <abcd:AreaClass language="en">Continent</abcd:AreaClass>
126
                  <abcd:AreaName language="en">North America</abcd:AreaName>
127
                </abcd:NamedArea>
128
              </abcd:NamedAreas>
129
              <abcd:Altitude>
130
                <abcd:MeasurementOrFactAtomised>
131
                  <abcd:LowerValue>2150 m</abcd:LowerValue>
132
                </abcd:MeasurementOrFactAtomised>
133
              </abcd:Altitude>
134
              <abcd:Notes language="en" />
135
            </abcd:Gathering>
136
            <abcd:RecordURI>http://herbarium.bgbm.org/object/BGT0023612</abcd:RecordURI>
137
          </abcd:Unit>
138
        </abcd:Units>
139
      </abcd:DataSet>
140
    </abcd:DataSets>
141
  </biocase:content>
142
  <biocase:diagnostics>
143
    <biocase:diagnostic severity="INFO">Datasource wrapper Herbar_BinHum requested</biocase:diagnostic>
144
    <biocase:diagnostic severity="INFO">Reading PSF from C:\bps2\config\datasources\Herbar_BinHum\provider_setup_file.xml</biocase:diagnostic>
145
    <biocase:diagnostic severity="INFO">BioCASe protocol used.</biocase:diagnostic>
146
    <biocase:diagnostic severity="INFO">HTTP parameter 'query' used for building the request.</biocase:diagnostic>
147
    <biocase:diagnostic severity="INFO">Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06</biocase:diagnostic>
148
    <biocase:diagnostic severity="INFO">Load CMFile 'C:\bps2\config\datasources\Herbar_BinHum\cmf_ABCD_2.06.xml'</biocase:diagnostic>
149
    <biocase:diagnostic severity="INFO">Executing SQL: 'SELECT DISTINCT TOP 11 [specimen].[SpecimenIdentifikationID] FROM [wrapper_table_with_associated_units] AS [specimen] WHERE ([specimen].[UnitID] LIKE 'B GT 0023612' ) ORDER BY [specimen].[SpecimenIdentifikationID]'</biocase:diagnostic>
150
    <biocase:diagnostic severity="INFO">Hits: 1</biocase:diagnostic>
151
    <biocase:diagnostic severity="INFO">Executing SQL: 'SELECT [specimen].[SpecimenIdentifikationID], [meta].[supplier_organisation], [meta].[supplier_email], [meta].[supplier_telephone], [meta].[supplier_adress], [meta].[legal_owner_organisation], [meta].[legal_owner_email], [meta].[legal_owner_telephone], [meta].[legal_owner_adress], [meta].[source_name], [meta].[description], [meta].[logo_url], [meta].[supplier_supplied_when], [meta].[source_update], [meta].[legal_owner_organisation_code], [meta].[legal_owner_person], [meta].[legal_owner_url], [meta].[ipr], [meta].[copyright], [meta].[rights_url], [meta].[terms_of_use], [meta].[disclaimer], [meta].[statement_url], [meta].[acknowledgement], [specimen].[StableURI], [meta].[source_code], [specimen].[UnitID], [identification].[Family], [identification].[FullNameCache], [identification].[Genus], [identification].[Spepi], [identification].[Inepi], [identification].[Rank], [identification].[BasionymAutor], [identification].[Author], [identification].[StorageNameFlag], [identification].[Identifier], [identification].[IdentifierDate], [specimen].[MaterialCategory], [specimen].[KindOfUnit], [identification].[TypeStatus], [images].[FileURI], [images].[ProductURI], [images].[imageformat], [images].[statement], [images].[statementURI], [specimen].[associatedUnitID], [specimen].[SpecimenQuailifier_eng], [specimen].[Sammeldatum], [specimen].[CollectionDateBegin], [specimen].[CollectionDateEnd], [specimen].[Sammlerteam], [specimen].[TitelEtikett], [specimen].[LokaleAngabe], [specimen].[DefinitionAndExplanation], [specimen].[kIsoCode], [specimen].[kontinent], [specimen].[Longitude], [specimen].[Latitude], [specimen].[hoehenangabe], [specimen].[OekologischeBesonderheiten], [specimen].[Anmerkungen], [specimen].[SammelNr], [specimen].[geschlecht], [meta].[source_code], [specimen].[SpecimenIdentifikationID], [identification].[BestID_PK], [images].[image_id] FROM [metadata] AS [meta], [wrapper_table_with_associated_units] AS [specimen] LEFT JOIN [view_bestimmung_table] AS [identification] ON ([identification].[SpecimenIdentifikationID] = [specimen].[SpecimenIdentifikationID]) LEFT JOIN [view_multimedia_objects] AS [images] ON ([images].[SpecimenIdentifikationID] = [specimen].[SpecimenIdentifikationID]) WHERE ([specimen].[SpecimenIdentifikationID] IN (279678)) ORDER BY [specimen].[SpecimenIdentifikationID]'</biocase:diagnostic>
152
    <biocase:diagnostic severity="INFO">Hits: 1</biocase:diagnostic>
153
    <biocase:diagnostic severity="INFO">Time for executing SQL queries (in seconds): 0.126 (get IDs), 0.140 (load full data).</biocase:diagnostic>
154
    <biocase:diagnostic severity="WARNING">The mandatory child element AssociatedUnitID could not be created [0 existing, but 1 required]. The element /DataSets/DataSet/Units/Unit/Associations/UnitAssociation was also dropped.</biocase:diagnostic>
155
    <biocase:diagnostic severity="INFO">Time for creating XML document object: 0.016sec.</biocase:diagnostic>
156
  </biocase:diagnostics>
157
</biocase:response>
(4-4/4)