Andreas Müller's activity
From 06/17/2021 to 07/16/2021
07/16/2021
- 03:00 PM EDIT Wiki edit: Release_Notes (#690)
- 02:58 PM EDIT feature request #8529: [DISCUSS]Display of aggregated descriptions
- Need to have a look if these tickets for taxon default values already exist.
- 02:58 PM EDIT feature request #8529: [DISCUSS]Display of aggregated descriptions
- NK:
... es geht um die default values für höhere Taxa. Wenn das woanders schon steht, kann das ticket gelöscht werden - 07:58 AM EDIT Revision 7a2e8a6e (cdmlib-apps): Add cdmlight export activator
- 07:54 AM EDIT Revision f54ba0df (cdmlib-apps): cleanup and add AizoaceaeIdentifierActivator
07/15/2021
- 05:00 PM EDIT Revision 4ecba1cb (cdmlib): move escapeSingleQuote to base class
- 04:13 PM EDIT Revision b457c481 (cdmlib): ref #4311 fix single quote escape in collectorTitle updater (cont.)
- 04:09 PM EDIT Revision ace088b8 (cdmlib): ref #4311 fix single quote escape in collectorTitle updater
- 03:23 PM EDIT Revision 315d359e (cdmlib): ref #9657 cleanup and make Partial comparator configurable for null handling
- 02:52 PM EDIT bug #9657 (Resolved): OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException: More than one row with the given identifier was found: 51
- This should be fully fixed now. Comparing partials may not throw an exception anymore. Only the order of gathering ev...
- 01:14 PM EDIT bug #9657: OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException: More than one row with the given identifier was found: 51
- Can you please test this? As we do do not have a test server for flora-malesiana-prospective I can't do this easily.
- 12:00 PM EDIT bug #9657 (Resolved): OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon fails with HibernateException: More than one row with the given identifier was found: 51
- This problem occurs due to using the compareTo method for gatheringEvent.timeperiod.start in the newly updated compar...
- 02:47 PM EDIT Revision 8c341841 (cdmlib): ref #9657 fully implement compare method for partials used in CDM
- 11:52 AM EDIT Revision 2fb46fd8 (cdmlib): ref #9657 fix gatheringDate compare for empty dates (e.g. freetext dates)
- 09:57 AM EDIT bug #9263: Unify case for type designation status
- I put this to next current milestone as it should be reviewed soon. Please put to v5.18 once reviewed and tests adapt...
- 09:42 AM EDIT bug #9237 (In Progress): FeatureTree SortIndex updater creates wrong sortindex
- Unfortunately this does not seem to work yet. I tested with TaxEditor and the order of a feature tree changed after a...
- 09:36 AM EDIT bug #9705 (Closed): Nomenclatural references with no title and microreference are not correctly formatted
- 09:25 AM EDIT task #9711 (New): Further improve matrix performance
- see #9710 for why this is needed
- 09:16 AM EDIT bug #9710 (Closed): DataIntegrityViolationException after adding a specimen to the matrix
- Murat:
I come across this error message when I add a new specimen to the matrix.
Do I have to reopen the matrix w...
07/14/2021
- 06:37 PM EDIT feature request #9674: footnote keys for annotations to multilanguageText name descriptions inside brackets
- By the way, the test portal puts the note to the end while on production it is before sec which makes the situation w...
- 06:35 PM EDIT feature request #9674 (Feedback): footnote keys for annotations to multilanguageText name descriptions inside brackets
- Andreas Kohlbecker wrote:
> The dot at the end of the string needs more careful consideration as it seems if this co... - 06:28 PM EDIT feature request #9674: footnote keys for annotations to multilanguageText name descriptions inside brackets
- Andreas Kohlbecker wrote:
> The request referenced in comment 2 seems to be misplaced since i can't find this text i... - 03:44 PM EDIT Revision e13687ce (taxeditor): ref #9668 fix CCE due to unordered result.getUpdatedObjects() and NPE due to missing secSources and some cleanup and javadoc
- 03:42 PM EDIT Revision 64924f13 (taxeditor): cleanup
07/13/2021
- 03:00 PM EDIT bug #9707 (New): Update details view (almost) immediately after parsing name
- AM:
ja, das ist auch an vielen anderen Stellen sehr störend, dass der Detailsview für Namen sich nach dem Parsen e... - 01:57 PM EDIT Revision 9633326d (cdmlib): fix #9705 fix case with empty reference having only protected titleCache
- 10:54 AM EDIT bug #9705 (Resolved): Nomenclatural references with no title and microreference are not correctly formatted
- Applied in changeset commit:cdmlib|88271645aba1610b2066edffb29b98e833bdafcc.
- 10:44 AM EDIT bug #9705 (Closed): Nomenclatural references with no title and microreference are not correctly formatted
- E.g. Catapedia Frisch & G.Thor in Jaklitsch & al., . 2016 from lichenes database.
- 10:54 AM EDIT Revision 88271645 (cdmlib): fix #9705 remove nomRef token and fix nomRef formatting for references without title
07/12/2021
- 05:28 PM EDIT Revision 60ae63a1 (taxeditor): adapt CdmLightExportWizardE4 to new CdmLighExportConfigurator
- 05:27 PM EDIT Revision 3deaf1d3 (taxeditor): cleanup
- 05:18 PM EDIT Revision 86021918 (cdmlib): adapt setter for CdmLightExportConfigurator.condensedDistributionConfiguration
- 04:12 PM EDIT Revision 3a2731eb (cdmlib): cleanup
- 04:12 PM EDIT Revision 2d679a33 (cdmlib): improve logging for existing identifiers in IdentifierImport
- 04:11 PM EDIT Revision 0bd9c712 (cdmlib): add factory method to CdmLightExportConfigurator
- 04:10 PM EDIT Revision 273e1a7f (cdmlib): cleanup
07/09/2021
- 09:33 PM EDIT bug #9703 (Resolved): Improve handling of type designations with no status in TypeDesignationSetManager
- This should be fixed and can be reviewed.
- 03:41 PM EDIT bug #7108: supress unwanted sourcetypes in handle_annotations_and_sources()
- Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > Works fine now and ticket can be closed.
> >
> > I only wo... - 03:30 PM EDIT bug #9704 (Closed): Several issues when trying to move taxon with dialogue
- When entering "*" I got the first exception.
When selecting the classification (root) as new parent I got the seco... - 03:15 PM EDIT bug #9360 (Feedback): Parsed hybrids can not be persisted
- 03:09 PM EDIT bug #8140 (Closed): Update list of type designation status which allow an explicit source
- Paralectotypes have been removed now. So I guess we can close this ticket.
- 03:07 PM EDIT bug #8140 (Resolved): Update list of type designation status which allow an explicit source
- Applied in changeset commit:cdmlib|e06767f2cf1514dc0521e5ba712e371d8f4e4de3.
- 03:07 PM EDIT Revision e06767f2 (cdmlib): fix #8140 #note-5 removed paralectotype from list of sourcable type designation status
- 02:58 PM EDIT bug #9453: Implement NameDesignationBase.hasDesignationSource() which takes isRejected and isConserved into account
- What exactly is meant here? Do we need an additional source field for the source saying that the type is rejected/con...
- 02:37 PM EDIT feature request #9114: Handle malformed URIs in user type
- This still needs feedback so I move to current milestone. Once it is fixed we can move to 5.19 where most of the work...
- 02:30 PM EDIT feature request #6866 (In Progress): Improve specimen page
- Looks like this is at least in progress as there are many commits.
Can we split this ticket into resolved issues a... - 02:27 PM EDIT bug #7781: original spelling is missing for accepted taxon in taxon page
- This is a feature users asked for frequently
- 02:24 PM EDIT bug #8965: Separator missing for aggregated descriptions of higher character tree nodes
- I guess this can be implemented fast.
- 02:13 PM EDIT feature request #8989: Implement flowering periods (temporal facts) in dataportal
- This has hight priority and should be implemented latest in next milestone (if not possible in current milestone).
- 01:43 PM EDIT Revision 1863bfc6 (taxeditor): cleanup
- 01:27 PM EDIT bug #9661: Add possibility to clone a MAN
- I guess this is fast to implement.
- 01:26 PM EDIT bug #9662: CDMLight: Output should summarize all MAN with same name and err. sec
- Katja, Andreas, should we think about a general formatter for homotypic groups, misapplication groups and full synony...
- 01:07 PM EDIT bug #9688 (Closed): Make disabled fields copyable
- For usernames it works as expected.
- 01:01 PM EDIT bug #9688 (Resolved): Make disabled fields copyable
- Katja Luther wrote:
> Fixed it for the Userdetails but the group name never was disabled. I can do this as well, but... - 10:26 AM EDIT bug #9688 (Feedback): Make disabled fields copyable
- I have to reopen this as now the Username and Group.name fields are editable again, but shouldn't. See also #8277.
... - 10:32 AM EDIT bug #9672 (Feedback): NPE when CDMPreference contains allowOverride=NULL
- I think this ticket can be closed (after reducing the description), as the only open issue is handled in #9673
- 10:29 AM EDIT bug #8277 (Duplicate): Username (and other fields) should allow c&p
- This is a duplicate for#9688 and was generally fixed there. But be aware that there is a regression for username and ...
- 10:11 AM EDIT bug #9646: CDM Light: Add name relationship to concatenated string for homotypic group
- is this already fixed?
- 10:08 AM EDIT task #2452 (Resolved): Media entities and Webpages
- Decide, how far this is open and what needs to be done.
- 10:06 AM EDIT bug #8113 (Resolved): Update TypeDesignationStatus labels
- Check if fully fixed. Move back to UML 5.5 afterwards.
- 10:05 AM EDIT feature request #8062 (Resolved): Make default preferences deletable serverside
- Check, how far this is fixed. Create open issues ticket and move this ticket back to 5.8
- 09:59 AM EDIT bug #7904 (Resolved): DerivedUnitFacadeFieldUnitCacheStrategy.getCollectorAndFieldNumber() creates temporary Team objects which can not be garbage collected.
- I guess this is solved with #9678. So the implemented solution is modification 1. The new cache strategy does not use...
- 09:46 AM EDIT feature request #7932 (Resolved): Implement subject resolver for CdmPreferences
- Needs to be reviewed and then moved back to 5.8. Open issues (also the one from note-14 should be moved to new ticket).
07/08/2021
- 08:11 PM EDIT Revision 50365e57 (cdmlib): cleanup CdmLightClassificationExport
- 07:19 PM EDIT Revision 7e1af4e5 (cdmlib): cleanup (cont.)
- 06:52 PM EDIT Revision 7b000bdc (cdmlib): cleanup
- 06:49 PM EDIT Revision 3733da48 (cdmlib): ref #9703 Improve handling of type designations with no status in TypeDesignationSetManager
- 06:46 PM EDIT bug #9703 (Resolved): Improve handling of type designations with no status in TypeDesignationSetManager
- Currently they are labeled as "Nametype: " wich is obviously not (always) correct.
Generally they should not get a... - 06:43 PM EDIT Revision 2bbade98 (cdmlib): cleanup
- 12:50 PM EDIT bug #9702: TypeDesignationSetManager repeats specimen string for specimens without field unit
- please review
- 12:49 PM EDIT bug #9702 (Resolved): TypeDesignationSetManager repeats specimen string for specimens without field unit
- Applied in changeset commit:cdmlib|81de71a63d3ccf4f0ecfe9ba1981b1df86bd5678.
- 10:31 AM EDIT bug #9702 (Closed): TypeDesignationSetManager repeats specimen string for specimens without field unit
- If the type specimen only has a protected titleCache the specimen string is repeated 2x.
E.g. Prionus coriatius L.... - 12:49 PM EDIT Revision 81de71a6 (cdmlib): fix #9702 handle specimen without field unit correctly in TypeDesignationSetManager
- 12:47 PM EDIT Revision 2d35c9d9 (cdmlib): ref #9702 add factory method for Collection
07/07/2021
- 06:09 PM EDIT bug #9237 (Resolved): FeatureTree SortIndex updater creates wrong sortindex
- Applied in changeset commit:cdmlib|8be5973f6635380f96052983a1f74aa118b2db41.
- 06:08 PM EDIT Revision 8be5973f (cdmlib): fix #9237 fix incorrect sortIndex updating (use existing sortindex, not id order)
- 06:06 PM EDIT Revision 57fa241c (cdmlib): cleanup
- 05:17 PM EDIT Revision c59b615e (cdmlib): cleanup
- 05:17 PM EDIT Revision 59c07ce1 (cdmlib): remove unused methods in AgentDao and AgentService (cont.)
- 05:06 PM EDIT Revision bf130acb (cdmlib): remove unused methods in AgentDao and AgentService
- 05:04 PM EDIT Revision c7ed8255 (taxeditor): cleanup
- 04:42 PM EDIT feature request #9680 (Closed): Show collectorTitleCache and protectedCollectorTitleCache+ protectedNomenclaturalTitleCache in BulkEditor
- Works now as expected
- 04:34 PM EDIT feature request #9700: Improve symbols for flags in use for term trees in term tree editor
- AK: ...
ZU den Icons unten:
das zweite das hier für "order relevant" vorgeschlagen ist, be... - 04:15 PM EDIT feature request #9700 (New): Improve symbols for flags in use for term trees in term tree editor
- copied from #9288
- 04:21 PM EDIT feature request #9572 (Closed): After creating a new term tree set the focus to the new tree
- This works now as expected.
- 04:20 PM EDIT feature request #9288 (Closed): Add symbols for flags in use for term trees in term tree editor
- "is flat" is now implemented. Move open issues for "allow duplicates" and "order relevant" to follow up ticket #9700
- 04:13 PM EDIT feature request #9337 (Closed): Open issues for reimplementation of termtree editors
- Issues related to notes 60 and 67 work as expected now.
Issue related to 64 needs further investigation and theref... - 12:11 PM EDIT feature request #9337 (Resolved): Open issues for reimplementation of termtree editors
- 12:09 PM EDIT feature request #9337: Open issues for reimplementation of termtree editors
- Katja Luther wrote:
> #61 is not fully solved I think but I will check this again.
You are right, this is not yet... - 03:16 PM EDIT Wiki edit: Release_Notes (#688)
- 02:54 PM EDIT Wiki edit: Release_Notes (#687)
- 02:32 PM EDIT Wiki edit: Release_Notes (#686)
- 02:31 PM EDIT Wiki edit: Release_Notes (#685)
- 02:25 PM EDIT Wiki edit: Release_Notes (#684)
- 02:24 PM EDIT Wiki edit: Release_Notes (#683)
- 12:15 PM EDIT bug #9668 (In Progress): Secundum reference is switched when swap synonym and accepted taxon
07/06/2021
- 03:02 PM EDIT Revision 030173c5 (cdmlib): cleanup
- 02:46 PM EDIT Revision 2692be07 (cdmlib): adapt generics in TeamOrPersonUuidAndTitleCache (cont. 2)
- 02:09 PM EDIT feature request #9680: Show collectorTitleCache and protectedCollectorTitleCache+ protectedNomenclaturalTitleCache in BulkEditor
- The column "collector titlecache" seems to show the collector title not the collector titleCache. At least for Person...
- 01:46 PM EDIT feature request #9680: Show collectorTitleCache and protectedCollectorTitleCache+ protectedNomenclaturalTitleCache in BulkEditor
- Andreas Müller wrote:
> Andreas Müller wrote:
> > Searching for a collector (from FieldUnit details view) does also... - 01:43 PM EDIT feature request #9680: Show collectorTitleCache and protectedCollectorTitleCache+ protectedNomenclaturalTitleCache in BulkEditor
- Andreas Müller wrote:
> Searching for a collector (from FieldUnit details view) does also not yet give a result for ... - 01:40 PM EDIT feature request #9680: Show collectorTitleCache and protectedCollectorTitleCache+ protectedNomenclaturalTitleCache in BulkEditor
- Andreas Müller wrote:
> Search in bulk editor does not yet include search on collector titlecache
works now - 02:03 PM EDIT Revision ba049a9a (cdmlib): adapt generics in TeamOrPersonUuidAndTitleCache (cont.)
- 01:56 PM EDIT Revision 3f359201 (cdmlib): adapt generics in TeamOrPersonUuidAndTitleCache
- 01:56 PM EDIT Revision 841d2453 (cdmlib): cleanup
- 01:16 PM EDIT feature request #9337: Open issues for reimplementation of termtree editors
- ... by the way this should be the behvior anyway and also works for tree nodes but does not seem to work for trees.
- 01:15 PM EDIT feature request #9337: Open issues for reimplementation of termtree editors
- #note-67 does not fully work for me yet. The new tree seems to get the focus but immediately looses it again. Looks l...
- 12:35 PM EDIT feature request #9337 (Feedback): Open issues for reimplementation of termtree editors
- Are the other issues also fixed (#60, #61, #64, #67)
- 11:12 AM EDIT feature request #9337: Open issues for reimplementation of termtree editors
- Also the "Open issue" is not reproducable anymore today. There must have been some strange problem with the build yes...
- 11:09 AM EDIT feature request #9337: Open issues for reimplementation of termtree editors
- Katja Luther wrote:
> Andreas Müller wrote:
> > In the Character Editor the details view does not show data anymore... - 11:08 AM EDIT feature request #9337: Open issues for reimplementation of termtree editors
- Katja Luther wrote:
> Andreas Müller wrote:
> > > in Character Editor allow adding the new created Character at the... - 12:58 PM EDIT bug #9629: Better handling of OptionalDataException
- This should be fixed. I tested by adding the following code to the beginning of BulkEditorUtil.openBulkEditor()
~~... - 12:54 PM EDIT bug #9629 (Resolved): Better handling of OptionalDataException
- Applied in changeset commit:taxeditor|c5a4c165774d6bf77b9927370983f7aad1cb09b3.
- 12:54 PM EDIT Revision c5a4c165 (taxeditor): fix #9629 handle OptionalDataException earlier in stack and recursive getCause()
- 12:54 PM EDIT Revision bdb4e94a (taxeditor): cleanup
- 11:59 AM EDIT Revision f8d675da (taxeditor): cleanup
- 11:35 AM EDIT Revision 9536f3f2 (taxeditor): ref #9629 cleanup t != null check and OptionalDataException check.
- 11:15 AM EDIT feature request #9288: Add symbols for flags in use for term trees in term tree editor
- Now, trees show a symbol but lists don't. I think either we show a symbol for both or for none of them.
- 10:51 AM EDIT feature request #5655: [DISCUSS] Do we need further "non xxx" relations?
- Before closing this ticket we need to check dataportal and cdmlight to include this relationship in the set of "non"-...
- 10:47 AM EDIT feature request #5655: [DISCUSS] Do we need further "non xxx" relations?
- AM:
Was ich dafür noch bräuchte wären passende Labels für beide Richtungen. Da diese Beziehung als solches nicht v... - 10:40 AM EDIT feature request #5655 (Resolved): [DISCUSS] Do we need further "non xxx" relations?
- 10:41 AM EDIT feature request #5640 (Duplicate): [DISCUSS] Do we need a general "non" name relationship
- 10:39 AM EDIT feature request #9698 (New): Make name relationship filter a DB preference
- ... similar to the nomenclatural status filter
To define the set of available name relationships for a project. So... - 10:35 AM EDIT Revision c7c43b5b (cdmlib): ref #5655, ref #5640 unspecific 'non' NameRelationshipType added
- 10:30 AM EDIT Revision c54186b7 (cdmlib): cleanup
07/05/2021
- 09:16 PM EDIT feature request #9572 (Feedback): After creating a new term tree set the focus to the new tree
- As mentioned in #9337 already, now, having the dialog, we do not need the focus setting anymore or better we should d...
- 09:05 PM EDIT feature request #9337: Open issues for reimplementation of termtree editors
- >After creating a new term tree set the focus to the new tree and in details view in title cache field
As we have ... - 08:57 PM EDIT feature request #9337: Open issues for reimplementation of termtree editors
- >Add "Open in Vocabulary" to term tree editor context menu;
also this is not visible anymore to me - 08:55 PM EDIT feature request #9337: Open issues for reimplementation of termtree editors
- > Add "Open in Referencing Objects view" to term tree editor context menu
This does not seem to work, neither in t... - 08:48 PM EDIT feature request #9337: Open issues for reimplementation of termtree editors
- sub issue #8756 to me is a critical issue. If possible we should try to fix it within this milestone.
- 08:46 PM EDIT feature request #9337: Open issues for reimplementation of termtree editors
- In the Character Editor the details view does not show data anymore. This to me seems critical as this is a place whe...
- 08:44 PM EDIT feature request #9337: Open issues for reimplementation of termtree editors
- > in Character Editor allow adding the new created Character at the focus place, not only on top
This to me still ... - 08:43 PM EDIT feature request #9337: Open issues for reimplementation of termtree editors
- > d&d from vocabulary editor to character editor not yet supported (maybe handled in #8554, #8238)
This to me seem... - 08:29 PM EDIT feature request #9337 (Feedback): Open issues for reimplementation of termtree editors
- >Show supplemental data
The UUID and Oject ID fields are now editable (or at least changeable), this seems to be a... - 08:04 PM EDIT feature request #9337: Open issues for reimplementation of termtree editors
- I moved all issues still marked as open to a new ticket #9697.
The issues marked as fixed are for review. - 12:35 PM EDIT feature request #9337 (Resolved): Open issues for reimplementation of termtree editors
- 08:03 PM EDIT feature request #9697 (New): Remaining issues for reimplementation of termtree editors
- copied from #9337
* Show supplemental data for term trees (term nodes already work #10335)
* Show term data in de... - 07:50 PM EDIT feature request #9696 (New): Implement taxon concept additional parameter for Taxon details view
- ... and show them if supportTaxonConcept (#9695) preference is set.
If easy to implement you could also implement ... - 07:44 PM EDIT feature request #9695 (Resolved): Implement a preference for supportsConcepts
- I added the predicate. Please review.
- 07:43 PM EDIT feature request #9695 (Closed): Implement a preference for supportsConcepts
- this might be a preliminary preference which makes it possible to do some development on develop branch without beaki...
- 07:44 PM EDIT Revision d1ee8032 (cdmlib): fix #9695 a predicate for supportsTaxonConcepts
- 07:34 PM EDIT report #7898: using jstack on cdmserver with jsvc reports all non native threads as BLOCKED
- This ticket is marked as resolved and 100% in Unassigned milestone. Can we fully close it and remove milestone or mov...
- 07:29 PM EDIT task #8379 (Resolved): Review strange specimen implementations
- According to note 13 this only needs a final check. So I put it on resolved in case it is fixed and only needs review.
- 07:27 PM EDIT task #8392 (Feedback): Types in PhycoBank
- 07:26 PM EDIT task #8392: Types in PhycoBank
- Wolf-Henning Kusber wrote:
> In general, gathering and type and specimen information is displayed in different more ... - 03:48 PM EDIT Revision c607b8a0 (cdmlib): cleanup
- 02:01 PM EDIT feature request #9694 (New): Validation Framework light
- Until the full validation framework is available we could implement a script that can be run against a DB which does ...
- 01:36 PM EDIT feature request #9692 (Closed): Add Operation class and link from TaxonRelationship
- 01:21 PM EDIT Revision 03b77fd8 (taxeditor): adapt test H2 to v5.25.1 in taxeditor
- 01:18 PM EDIT Revision 7fc266d2 (cdm-vaadin): adapt test H2 to v5.25.1 in vaadin
- 01:15 PM EDIT Revision 573b9e1e (cdmlib): adapt test H2 in cached model to v5.25.1 in cdmlib
- 01:15 PM EDIT Revision 3bf323a8 (cdmlib): adapt correct model schema number
- 01:15 PM EDIT Revision 6bf3734b (cdmlib): ref #9692 add operation class and link from TaxonRelationship
- 01:15 PM EDIT Revision 7aae56da (cdmlib): ref #4311 move update script for collector title to 5.25.1
- 01:15 PM EDIT Revision 6326b57d (cdmlib): add schemaversion 5.25.1
- 11:11 AM EDIT feature request #786: Write Developers Guide for CDM Library
- I agree that we should generally close the ticket as we do not need an extensive documentation. But maybe before clos...
- 10:43 AM EDIT Revision 863e580f (cdmlib): ref #6714 always remove ddl file before creating new one (for mvn without clean)
- 09:59 AM EDIT bug #9684 (Feedback): OccurrenceServiceImpl.listRootUnitDTOsByAssociatedTaxon() - [UPDATE] not permitted for 'anonymousUser'
- Is this fixed by the commits? Or is there another open issue?
07/03/2021
- 12:10 AM EDIT feature request #9692 (Resolved): Add Operation class and link from TaxonRelationship
- 12:10 AM EDIT task #5244 (Closed): [DISCUSS] How should specimens be created and edited?
- Works as expected.
- 12:02 AM EDIT Revision 5ebd3071 (cdmlib): cleanup
07/02/2021
- 11:36 PM EDIT bug #7075: Excel import for images
- Also check the import mentioned in #516 for open issues (ticket was closed as it is kind of duplicate for this ticket)
- 11:35 PM EDIT bug #7075: Excel import for images
- Generally this is ready and can be closed, but we need a follow up ticket for further generic implementation for imag...
- 11:23 PM EDIT task #578: @Ignore removed from PersistentTermInitializerTest
- The test is still on ignore.
- 11:13 PM EDIT feature request #688 (Feedback): Tests for AbstactBeanInitializer implemented
- We do have tests for AdvancedBeanInitializer which is used as default now. So I don't know if we still need to implem...
- 11:10 PM EDIT feature request #694: FeatureTreeService and DescriptionElement implemented
- We do have a term tree service. But there is no DescriptionElementService yet. Needs discussion if we really need it.
- 11:06 PM EDIT feature request #718: Long term solution for saving images to taxa
- Andreas Müller wrote:
> it looks like the #700 becomes a stable solution so maybe we can close this ticket.
>
>
... - 10:59 PM EDIT bug #8202: Multiple representations exception when reusing image in image gallery
- We should check if this is still an open issue. If yes, fix it.
- 10:50 PM EDIT bug #825: DefinedTermDaoImpl - missleading method names
- This is still an open issue.
- 10:29 PM EDIT feature request #1097: Check comb. nov. with taxonomists
- Comb. nov. currently is a nomenclatural status but it needs to be discussed if this makes sense. See also related tic...
- 10:19 PM EDIT feature request #1176: OriginalSource has to support multiple OriginalNames
- There might be another ticket on this issue.
- 10:06 PM EDIT feature request #1742: Adapt the ZooNameDefaultCacheStrategy
- Is this still an open issue?
- 10:04 PM EDIT bug #1835: PALMS. Not clear format for authors and references to be parsed correctly
- Check what is still open here. (At least the alternative year parsing)
- 08:57 PM EDIT task #2346 (Rejected): [Discuss] Version Numbering for CDM Library
- I think I current version numbering works very well for us now even if we do not fully follow the suggestions in http...
- 08:49 PM EDIT feature request #2395: Create update script for type status abbreviations and for Unknown type category
- Check if this is still needed!
- 08:36 PM EDIT bug #2449 (Resolved): Some or many names have an empty fullTitleCache though information is atomized
- Check if this is fixed with #9665
- 08:32 PM EDIT bug #2448 (Feedback): Missing updated by/when (e.g. in PalmWeb)
- Maybe this is fixed with #5066.
Need to check recent data if it still happens. - 07:44 PM EDIT Revision 2dc79f92 (cdmlib): fix #2653 remove the last countAllRelationships method from persistence as it is not used and somehow against api conventions
- 07:43 PM EDIT Revision 9ed44664 (cdmlib): cleanup
- 07:33 PM EDIT task #2669 (Worksforme): Move current dataset.dtd to persistence layer and fix testListInitialization test
- This seems to be fixed as there is only 1 dataset.dtd left and it has been moved to cdmlib-test.
- 07:25 PM EDIT task #2859: TaxonNameBase.getReferenceYear does not return inRef year
- Generally this exact method does not seem to be used at all (I checked in cdmlib, vaadin and imports by call hiearchy...
- 06:33 PM EDIT bug #3933 (Duplicate): the search result list should contain bastards in alphabetical order
- I close this as duplicate for #4796
- 06:27 PM EDIT bug #3933: the search result list should contain bastards in alphabetical order
- Need to check if this is still the case. If yes, try to implement correctly.
- 06:31 PM EDIT bug #4796: Sorting of hybrids
- This is probably duplicated by #3933. See also comments there.
Test if it is still an open issue. - 06:15 PM EDIT bug #7233 (Feedback): LIE during processing of webservice request to /portal/taxon/{uuid}/taxonNodes
- Can you please check if this is still an open issue after the nomenclaturalTitle implementation has been changed now ...
- 06:10 PM EDIT task #3346 (Feedback): Team.addListenerForTeamMember(Person member) adds idle listener
- This seems to be fixed or the problem was removed in some other way.
Can you please verify, and if true, close tic... - 05:54 PM EDIT feature request #8157: Registration list view: sort registrations by the same order as in the dataportal
- "old" milestone should not be used anymore
- 05:52 PM EDIT feature request #9442: Show warning for non conformant letter case in scientific names
- "Old" milestone should not be used anymore
- 05:10 PM EDIT Revision ef165fe2 (cdmlib): cleanup
- 02:45 PM EDIT task #5244: [DISCUSS] How should specimens be created and edited?
- Hmm, I thought about it again and I think we can leave it as it is. Disabling also has disadvantages.
- 02:42 PM EDIT task #5244: [DISCUSS] How should specimens be created and edited?
- Katja Luther wrote:
> I removed the field unit from the combo box if it is anything else than a field unit and remov... - 12:22 PM EDIT task #5244 (Feedback): [DISCUSS] How should specimens be created and edited?
- This ticket is fixed except for the open issue on limitation when setting the type. Can you please fix these minor is...
- 12:17 PM EDIT task #5244: [DISCUSS] How should specimens be created and edited?
- The other way round for field units the type should not be changeable at all as generally switching a field unit to a...
- 11:48 AM EDIT task #5244: [DISCUSS] How should specimens be created and edited?
- Katja Luther wrote:
> Andreas Müller wrote:
> > Open issues:
> >
> > * Calling "New" in specimen list editor fir... - 11:13 AM EDIT task #5244: [DISCUSS] How should specimens be created and edited?
- Open issues:
* Calling "New" in specimen list editor first opens single line dialogue and then opens full dialogue... - 01:54 PM EDIT Revision 40931df0 (cdmlib): ref #9599 fix taggedFullTitle test
- 01:00 PM EDIT Revision e6685276 (cdmlib): minor
- 12:59 PM EDIT feature request #9692 (Closed): Add Operation class and link from TaxonRelationship
- The class for now can be versionable (maybe later annotatable).
Also we need an Enum for operation types (starting... - 12:53 PM EDIT task #9624 (Closed): Centralize team formatting and fix et al. position handling
- I think we can close this ticket. If there are open issues we should open new tickets.
- 12:50 PM EDIT task #9599: remove usage of 'reference/{uuid}/nomenclaturalCitation' in portal
- For having the nom ref in the tagged title you need to use the TaxonName.getTaggedFullTitle() method. This includes t...
- 12:01 PM EDIT Revision 111967be (cdmlib): ref #9678 improve titleGeneration for derived units with empty field units
- 11:03 AM EDIT bug #9688 (Closed): Make disabled fields copyable
- works as expected now.
- 10:51 AM EDIT feature request #7251 (Resolved): Enable collectorTitle in cdm-vaadin TeamOrPersonBaseCaptionGenerator
- This was solved with #4311 I guess. Please review.
Please also check if some implementation needs to be done for #... - 10:41 AM EDIT feature request #4311 (Closed): Improve person representation in CDM
- All issues are fixed now except for those mentioned in the followup ticket.
- 10:31 AM EDIT Revision a47b46ac (cdmlib): ref #4311 improve collectorTitle update script
- 10:31 AM EDIT Revision 03a19312 (cdmlib): cleanup
- 10:31 AM EDIT Revision 8e1a14c5 (cdmlib): ref #9664, ref #4311 improve cache update for teams
07/01/2021
- 03:58 PM EDIT bug #9688: Make disabled fields copyable
- I guess this is for review.
- 01:34 PM EDIT bug #9688 (Feedback): Make disabled fields copyable
- Now an unprotected toggleable field can be edited. I tested with unprotected collector title of a team. But same resu...
- 10:02 AM EDIT bug #9688 (Feedback): Make disabled fields copyable
- Copy from #9287:
AM:
For toggleable they still set the dirty flag (tested on Person details view with bulk edit... - 03:56 PM EDIT bug #9634 (Closed): Update AgentBase and DescriptiveDataSet titleCache length where needed
- I did run the "find open issue" statement on edit-test and edit-integration and could not find any open issues except...
- 03:29 PM EDIT task #9679: Formatter and update script for SpecimenOrObservationBase short cache
- Once this is implemented we should add #5951 to current milestone.
- 03:28 PM EDIT task #9678 (Closed): Remove Derived- and FieldUnitFacadeCacheStrategies
- I think we can close this ticket now. Also the failing test in dataportal is fixed now (mediaspecimen are shown there...
- 03:23 PM EDIT feature request #5575 (Closed): DNA Sample requires CacheStrategy
- Not sure if this is already fully fixed but it needs to be adapted/tested anyway once we unify DnaSample with Derived...
- 03:01 PM EDIT Revision 61c33dfd (cdmlib): ref #9683 adapt method name and javadoc
- 02:57 PM EDIT bug #9683 (Feedback): Auto-initialize root bean
- I finally decided to rename the methods (in service and persistence) to loadWithoutInitializing as this is semantical...
- 02:40 PM EDIT bug #9663 (Closed): Remove additional text from media title
- Works as expected and removing the file suffix is another good feature.
Only there was 1 test that was adapted in ... - 02:37 PM EDIT Revision 38d5ecb8 (cdmlib): ref #9663 adapt test to test for removing the suffix (jpg and &mo=file)
- 01:31 PM EDIT feature request #7309 (Feedback): Implement collectorTitle and collectorTitleCache and the same for nomenclatural title in tax editor
- A final minor issue. Can we use a grey which is a bit more light? Currently, at least on my screen, it is difficult t...
- 01:24 PM EDIT feature request #7309 (Closed): Implement collectorTitle and collectorTitleCache and the same for nomenclatural title in tax editor
- Works as expected now
- 01:16 PM EDIT bug #9690: Exception when editing name supplemental data in taxon bulk editor
- Except for the above exception the bug seems to be fixed now.
- 01:15 PM EDIT bug #9690 (Feedback): Exception when editing name supplemental data in taxon bulk editor
- Now I get
~~~
last remote method : http://test.e-taxonomy.eu:80/cdmserver/rem_conf_am/remoting/common.service
la... - 12:48 PM EDIT bug #9373 (Closed): In specimen details view used within specimen tree editor titleCache field is not enabled when it is protected
- works as expected
- 10:01 AM EDIT feature request #9287 (Closed): Show term details in details view of term tree editor
- As there is a followup ticket for the general "copyable" issue we can close this ticket and move discussion on "copya...
- 09:56 AM EDIT feature request #9287: Show term details in details view of term tree editor
- It works as expected for the fields in the term tree details view (which are not toggleable).
For toggleable they ... - 09:42 AM EDIT feature request #9680: Show collectorTitleCache and protectedCollectorTitleCache+ protectedNomenclaturalTitleCache in BulkEditor
- Searching for a collector (from FieldUnit details view) does also not yet give a result for searching on collector ti...
- 09:33 AM EDIT feature request #9680: Show collectorTitleCache and protectedCollectorTitleCache+ protectedNomenclaturalTitleCache in BulkEditor
- The search result in search dialog does not yet include the collector title cache
This is... - 09:30 AM EDIT feature request #9680 (Feedback): Show collectorTitleCache and protectedCollectorTitleCache+ protectedNomenclaturalTitleCache in BulkEditor
- Search in bulk editor does not yet include search on collector titlecache
06/30/2021
- 10:01 PM EDIT feature request #5655: [DISCUSS] Do we need further "non xxx" relations?
- WGB:
Non-indications without giving the exact reason:
I would also [like] to have a simple directed name relation... - 09:52 PM EDIT feature request #5655: [DISCUSS] Do we need further "non xxx" relations?
- Hallo,
ich dachte, ich hätte hierzu schon geschrieben, aber ich finde die Mail nicht (und im Release ist’s auch nich... - 09:14 PM EDIT bug #6468 (Worksforme): sec and sensu not correct if misapplied name relationship reference exists
- This to me seems to be fixed with the implementation on formatter for taxon relationships (misapplications and pro pa...
- 09:11 PM EDIT task #9528 (Worksforme): synonymy: missplied names sensu with short authorship string
- This to me seems to be fixed with the latest changes on short citation formatting in cdmlib.
The citation now look... - 06:21 PM EDIT bug #9691 (New): Implement aggregates correctly for zoological names
- Zoology handles aggregates different to botany as can be seen in the ICZN: https://code.iczn.org/chapter-2-the-number...
06/29/2021
- 11:04 PM EDIT Revision ed5871af (cdmlib): ref #4311 add initials + family default for collectorTitleCache
- 11:02 PM EDIT Revision 27d743af (cdmlib): cleanup
- 10:41 PM EDIT feature request #7309 (Feedback): Implement collectorTitle and collectorTitleCache and the same for nomenclatural title in tax editor
- 10:29 PM EDIT feature request #7309: Implement collectorTitle and collectorTitleCache and the same for nomenclatural title in tax editor
- It seems to work now.
However, there is another problem now. The protect button is disabled for all titleCache fie... - 10:30 PM EDIT feature request #9287: Show term details in details view of term tree editor
- See also #7309#note-19 which is maybe related to this ticket.
- 07:06 PM EDIT feature request #9287 (Feedback): Show term details in details view of term tree editor
- Works as expected now and we can close the ticket.
There is only one final issue which is valid for all disabled f... - 10:08 PM EDIT Revision f9d65b70 (cdmlib): ref #9664 , ref #4311 fix cache handling for collectorTitle and nomenclaturalTitle
- 09:30 PM EDIT Revision c1e0cb15 (cdmlib): ref #9683. ref #9664 fix tests in AgentServiceImplTest
- 09:09 PM EDIT Revision 5861cfb5 (cdmlib): ref #9664 , ref #4311 adapt autoInitializer
- 09:07 PM EDIT Revision c26ab6e0 (cdmlib): cleanup
- 06:59 PM EDIT feature request #9647 (Closed): After deduplication the remaining record should get the focus in bulk editor
- I also could not reproduce this anymore. So I think we can close this ticket and watch the deduplication in production.
- 06:50 PM EDIT task #6714 (Closed): Create 001-cdm.h2.sql automatically
- 06:41 PM EDIT task #6714 (Resolved): Create 001-cdm.h2.sql automatically
- 06:26 PM EDIT Revision ae8047fb (cdmlib): ref #6714 fix ddl creation with template
- 04:06 PM EDIT Revision 6c5e41a1 (cdmlib): cleanup
06/28/2021
- 05:31 PM EDIT Revision 4bafd675 (cdmlib): ref #9664 , ref #4311 fix updateCaches in Person
- 03:55 PM EDIT Revision cc1f61ef (cdmlib): ref #9664 fix test data
- 03:45 PM EDIT Revision 491f1f91 (cdmlib): ref #4311 fix collectorTitleCache handling in Team an in person2Team
- 03:43 PM EDIT Revision 1ba6c1ad (cdmlib): ref #9664 fix nomTitleCache test for fully empty person2Team
- 03:40 PM EDIT Revision 346eb1a6 (cdmlib): remove isGeneratingTitleCache which is not in use anymore
- 03:08 PM EDIT bug #9683: Auto-initialize root bean
- My comment was about the method in service. Maybe in dao it is slightly different as it is always used within a sessi...
- 03:06 PM EDIT bug #9683: Auto-initialize root bean
- Andreas Kohlbecker wrote:
> I think the new method, which by the way is only used for test classes, is irritating:
... - 09:39 AM EDIT bug #9683 (Resolved): Auto-initialize root bean
- Applied in changeset commit:cdmlib|5348613baa59038220d4efd1e4a851e3ccdb6c58.
- 09:35 AM EDIT bug #9683 (Closed): Auto-initialize root bean
- Currently only related objects are auto-initialized by the AbstractBean.beanAutoInitializers . The root bean itself i...
- 12:16 PM EDIT Revision 322154af (cdmlib): cleanup
- 11:28 AM EDIT Revision bcbe5633 (cdmlib): ref #9683 add loadProxy method to services and adapt test to work with current auto initialize settings
- 11:25 AM EDIT Revision f4b956d8 (cdmlib): ref #9664 remove setting person setNomenclaturalTitle during cache update and avoid recomputing nomTitleCache and collectorTitleCache (not sure what this is needed for)
- 10:35 AM EDIT Revision b8e3fd47 (cdmlib): cleanup
- 09:43 AM EDIT task #9678 (Resolved): Remove Derived- and FieldUnitFacadeCacheStrategies
- The failing test in vaadin is related to incorrect autoinitialization (#9683) which is fixed now. So this ticket shou...
- 09:39 AM EDIT Revision 5348613b (cdmlib): fix #9683 autoinitialize root bean
- 09:38 AM EDIT Revision 3606bda3 (cdmlib): cleanup
06/26/2021
- 09:25 AM EDIT Revision 9d97647a (cdmlib): ref #9433 fix incorrect handling for MAN without sec/sensu reference
06/25/2021
- 07:58 PM EDIT bug #9665 (Closed): Filter out property change event for created and updated and cacheStrategy
- 07:44 PM EDIT feature request #9682 (New): Implement source for external authors
- via webservice to ipni or on something like CDM term server.
Good sources for (botanical) persons are:
Inde... - 07:41 PM EDIT feature request #9664 (Resolved): Add nomenclaturalTitleCache to TeamOrPersonBase
- 07:37 PM EDIT feature request #4311 (Resolved): Improve person representation in CDM
- Collector titel update script and explicit nomenclaturalTitleCache including protected have been implemented.
Open... - 07:35 PM EDIT task #9681 (New): Open issues for improving person representation
- copied from #4311
* usage of "suffix" (correct label??) in "Taxonname reference author" (discuss with NK)
* full ... - 07:08 PM EDIT bug #9651 (Closed): After creating a new MAN the details view is filled with other MAN
- Seem to work as expected (but not sure if I could reproduce it correctly)
- 07:01 PM EDIT feature request #9572 (Feedback): After creating a new term tree set the focus to the new tree
- Works as expected so we can close the ticket.
I only wonder if it can be further improved. Currently you have to d... - 06:55 PM EDIT feature request #9647 (Feedback): After deduplication the remaining record should get the focus in bulk editor
- This generally works as expected but in 20-30% of the cases after setting the focus it got lost immediately again tho...
- 06:47 PM EDIT bug #9654 (Closed): Deleting a synonym which has no name throws exception
- Works as expected
- 06:40 PM EDIT Revision f3fd528a (cdmlib): cleanup
- 06:35 PM EDIT feature request #9655 (Closed): When adding a new team member open search dialogue immediately
- Works as expected. ... and saves time
- 06:32 PM EDIT bug #9373: In specimen details view used within specimen tree editor titleCache field is not enabled when it is protected
- How to reproduce:
* Create a specimen with a protected titleCache
* Open specimen tree editor and search for the ... - 06:23 PM EDIT feature request #7178 (New): implement collectorTitleCache in TeamOrPersonField (vaadin)
- The collector title is now implemented and available so the according field in vaadin editor can be implemented, too.
- 06:20 PM EDIT feature request #7178: implement collectorTitleCache in TeamOrPersonField (vaadin)
- Andreas Kohlbecker wrote:
> Aber bei diesem Ticket geht es um das vaadin UI nicht um die titleCache-Generierung in d... - 06:17 PM EDIT feature request #9680 (Closed): Show collectorTitleCache and protectedCollectorTitleCache+ protectedNomenclaturalTitleCache in BulkEditor
- ... and extend search on the collectorTitleCache field.
Also the collectorTitleCache should be included in search ... - 06:12 PM EDIT feature request #7309 (Feedback): Implement collectorTitle and collectorTitleCache and the same for nomenclatural title in tax editor
- >For Person the result of the collectorTitleCache field should only be displayed but not be editable.
This still s... - 06:05 PM EDIT feature request #9287 (Feedback): Show term details in details view of term tree editor
- The buttons for multi-language editing are still enabled. So it is possble to remove a description for a given langua...
- 05:51 PM EDIT task #9678 (In Progress): Remove Derived- and FieldUnitFacadeCacheStrategies
- Mostly implemented but there is still a test in vaadin that fails due to a lazy initialization exception when calling...
- 09:52 AM EDIT task #9678 (Closed): Remove Derived- and FieldUnitFacadeCacheStrategies
- Cache strategies for FieldUnits and DerivedUnits are currently using the DerivedUnitFacadeCacheStrategy or DerivedUni...
- 12:52 PM EDIT Revision 603e7617 (cdm-vaadin): remove preliminary ignore from vaadin test
- 12:51 PM EDIT Revision 3750d994 (cdm-vaadin): preliminary ignore vaadin test
- 12:44 PM EDIT Revision 160332b0 (cdm-vaadin): fix failing test test03_deleteTypeDesignationTest
- 12:16 PM EDIT Revision 64a847c9 (cdm-vaadin): ref #4311 adapt vadin to collectorTitleCache
- 12:15 PM EDIT Revision fe720b6e (cdm-vaadin): ref #9664 adapt vaadin to nomenclaturalTitleCache
- 12:15 PM EDIT Revision d32ecdf2 (cdm-vaadin): update test DB for vaadin to 5.25
- 12:14 PM EDIT Revision f18466c9 (cdm-vaadin): cleanup
- 12:06 PM EDIT Revision 1f48ecbf (taxeditor): cleanup
- 12:06 PM EDIT Revision c03f37d8 (taxeditor): update test DB for taxeditor to 5.25
- 12:01 PM EDIT Revision f016f939 (cdmlib): update CdmCache and test DB for cdmlib to 5.25
- 10:32 AM EDIT bug #8517 (Closed): SpecimenOrObservation: data from protected titleCache missig in portal pages
- The above links work as expected so I think we can close this ticket. Please reopen if you think there is something l...
- 10:21 AM EDIT Revision bd4c6676 (cdmlib): ref #9678 implement cache strategies for field unit and derived unti within cdmlib model
- 10:21 AM EDIT Revision c189e0fb (cdmlib): cleanup and return empty Set (not null) for getOriginals
- 10:21 AM EDIT Revision 571c7dcc (cdmlib): add Identifier table to test data schema
- 10:21 AM EDIT Revision da9b5ae7 (cdmlib): cleanup
- 10:21 AM EDIT Revision c4b1960b (cdmlib): move SingleReadFormatter and SequenceFormatter to molecular package
- 10:21 AM EDIT Revision 21dd08ab (cdmlib): ref #4311 Increase size of collectorTitleCache to 800 in update script
- 10:21 AM EDIT Revision b69c47b9 (cdmlib): ref #9634 Increase size for AgentBase.titleCache to 800
- 10:21 AM EDIT Revision 30db901d (cdmlib): ref #9664 , ref #4311 Add nomenclaturalTitleCache to TeamOrPersonBase update script
- 10:21 AM EDIT Revision ce5bca3b (cdmlib): trim family name for titleCache
- 10:21 AM EDIT Revision 17b1eb1a (cdmlib): fix potential (but very unlikely) NPE in TaxonName.getAuthorshipCache
- 10:21 AM EDIT Revision 466620b1 (cdmlib): fix #9665 filter propertyChange events for created and updated
- 10:21 AM EDIT Revision 1cbb5d95 (cdmlib): cleanup
- 10:21 AM EDIT Revision 9f6a56c9 (cdmlib): ref #9664 first implementation for TeamOrPersonBase.nomenclaturalTitleCache (update script still missing)
- 10:21 AM EDIT Revision 66665714 (cdmlib): cleanup
- 10:21 AM EDIT Revision 71b9b632 (cdmlib): ref #4311 first implementation for TeamOrPersonBase.collectorTitle
- 10:21 AM EDIT Revision 6a912e4c (cdmlib): adapt version and CdmUpdater to v5.25
- 10:21 AM EDIT Revision 773b7fd0 (cdmlib): cleanup
- 10:11 AM EDIT task #9679 (New): Formatter and update script for SpecimenOrObservationBase short cache
- ... or "identityCache".
Also think about deviding titleCache in titleCache and fullTitle(Cache) where only the lat...
06/22/2021
- 07:22 PM EDIT feature request #9677: Implement recombine operation
- NaK:
ja, genau, es sind Neukombinationen aufgrund neue taxonomische Erkenntnisse, oder einer phylogenetischen Stud... - 07:19 PM EDIT feature request #9677 (New): Implement recombine operation
- Currently we have only move and swap operations available for implementing a recombination of a taxon.
However, us...
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