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From 02/11/2021 to 03/12/2021

03/12/2021

04:32 PM EDIT task #9528 (Worksforme): synonymy: missplied names sensu with short authorship string
Bei Misapplikationen werden im "sensu"-Teil sämtliche Autoren ohne Initialen aufgeführt. An dieser Stelle würde ein "... Andreas Kohlbecker
03:45 PM EDIT bug #9526 (Resolved): Sort order in E+M distribution string should be strictly alphabetic
This should be fixed. Eckhard, can you please review on test server (see link above) it it is ok Andreas Müller
12:05 PM EDIT bug #9526 (Closed): Sort order in E+M distribution string should be strictly alphabetic
Currently it is according to vocabulary (which is ordered alphabetically on same levels but ofcourse not for subareas... Andreas Müller
03:32 PM EDIT bug #9527: Consensus Sequence Details: Consensus Sequence 5' -> 3' limit characters to [aAcCgGTtUu\s]
Is there a reason for this requirment or is it only because we expect sequences to be like this.
And why is it a Tax...
Andreas Müller
02:59 PM EDIT bug #9527 (New): Consensus Sequence Details: Consensus Sequence 5' -> 3' limit characters to [aAcCgGTtUu\s]
for data to be entered or modified into the "Consensus Sequence 5' -> 3'" text-area the allowed characters, to be typ... Andreas Kohlbecker
01:45 PM EDIT Revision b9d4068f (cdm-dataportal): ref #7599 fixing name link of identifications
Andreas Kohlbecker
01:36 PM EDIT feature request #7599: treeView for specimen data in dataportal
Open issues:
* the identifications should be clickable with link to name --> link url broken
* sequence data sh...
Andreas Kohlbecker
01:27 PM EDIT feature request #9216: Derivate tree view should merge branches to multiple root elements into one branch
This feature has only lower priority since we currently don't have any data with multiple originals Andreas Kohlbecker
12:30 PM EDIT Revision dd2dcd5e (cdmlib): Change name of AlphabeticallyAscendingNamedAreaComparator to AscendingNamedAreaComparator as it is not alpabetically
Andreas Müller
12:06 PM EDIT Revision bb365222 (cdmlib): ref #9526
Andreas Müller
10:55 AM EDIT Revision b1101440 (cdm-dataportal): upadating jackson-databind dependency
Andreas Kohlbecker
10:48 AM EDIT task #9458 (Closed): Consider lower zoom level as default
Andreas Kohlbecker
10:48 AM EDIT task #9458 (Resolved): Consider lower zoom level as default
Applied in changeset commit:cdm-dataportal|7931750e5703e7ae42fc8fd9e24de10f98866d90. Andreas Kohlbecker
10:47 AM EDIT Revision 7931750e (cdm-dataportal): fix #9458 setting default max zoom level for maps to 13
Andreas Kohlbecker
10:47 AM EDIT Revision f4c1810a (cdm-dataportal): fix setting default max zoom level for maps to 13
Andreas Kohlbecker
10:43 AM EDIT Revision c0db9246 (cdm-dataportal): removing old map service URL
Andreas Kohlbecker
10:36 AM EDIT Revision bd262a5c (cdmlib): fix missing space in homotypic group string
Katja Luther
10:20 AM EDIT bug #9213 (Closed): specimen views 'compressed table' and 'derivate tree' fail when no fieldunits exists
this is already solved, see http://cichorieae.e-taxonomy.net/portal/cdm_dataportal/taxon/85176c77-e4b6-4899-a08b-e257... Andreas Kohlbecker
10:19 AM EDIT Revision 97147b0d (taxeditor): fix handler names after renaming in fragment.e4xmi
Katja Luther
09:25 AM EDIT Revision 1a182481 (taxeditor): featureTree -> termTree - adapt MANIFEST.MF
Katja Luther
09:15 AM EDIT Revision dff55a57 (taxeditor): featureTree -> termTree - continue
Katja Luther

03/11/2021

03:15 PM EDIT Revision 8d389810 (taxeditor): featureTree -> termTree - continue
Katja Luther
03:10 PM EDIT Revision 5fec480a (taxeditor): rename featureTree package to termtree
Katja Luther
02:52 PM EDIT Revision e92feae0 (taxeditor): adapt character editor to renamed TermTreeComparator
Katja Luther
02:48 PM EDIT Revision 8990c8a9 (taxeditor): adapt to new package structure - continue
Katja Luther
02:45 PM EDIT Revision b26c4987 (taxeditor): adapt to new package structure - continue
Katja Luther
02:29 PM EDIT feature request #5682 (Closed): Implement condensed distribution string for Cuba
I think this is fixed or requirements are not clear anymore. Therefore I close it. Andreas Müller
01:30 PM EDIT Revision 513c1824 (cdm-dataportal): updatinfg and improving docu
Andreas Kohlbecker
01:28 PM EDIT Revision b8352f21 (cdmlib): move test resources for util package tests
Andreas Müller
01:15 PM EDIT Revision 4fe03e8f (taxeditor): adapt to new package structure
Katja Luther
01:10 PM EDIT Revision 9864765e (cdmlib): Cleanup
Andreas Müller
01:10 PM EDIT Revision ec1bea22 (cdmlib): move CacheUpdater and SortIndexUpdaterWrapper to service.longrunning
Andreas Müller
12:56 PM EDIT bug #9525 (Resolved): Namerelationship source label is missing sometimes
Katja Luther
12:55 PM EDIT bug #9525 (Closed): Namerelationship source label is missing sometimes
For Namerelationships the label for the source is missing sometimes. Katja Luther
12:46 PM EDIT Revision d34a4e38 (taxeditor): remove Remoting from classnames and rename featuretreecomparator -continue
Katja Luther
12:43 PM EDIT Revision ee305eb1 (taxeditor): avoid widget is disposed exceptions for termsearch
Katja Luther
12:40 PM EDIT Revision 2978c511 (taxeditor): remove Remoting from classnames and rename featuretreecomparator -continue
Katja Luther
12:39 PM EDIT Revision d991bdfe (taxeditor): remove Remoting from classnames and rename featuretreecomparator
Katja Luther
12:32 PM EDIT Revision 0345075d (cdmlib): fix issue related to combine service-layer utility packages
Andreas Müller
12:29 PM EDIT Revision 4cd3b432 (cdmlib): cleanup
Andreas Müller
12:29 PM EDIT Revision 35e1f27a (cdmlib): fix Save/UpdateEntityListener issue
Andreas Müller
12:23 PM EDIT Revision a2fec34c (cdmlib): partly revert b691d5a7b70 removal of Save/Update Event Listeners
Andreas Müller
12:06 PM EDIT Revision 33227403 (cdm-vaadin): combine service-layer utility packages in vaadin
Andreas Müller
12:03 PM EDIT Revision 989daf68 (cdmlib): combine service-layer utility packages
Andreas Müller
11:43 AM EDIT Revision 01bb5e1e (cdm-vaadin): rename RoleProbe(r) in vaadin
Andreas Müller
11:38 AM EDIT Revision b528081c (cdmlib): rename RoleProbe(r)
Andreas Müller
10:46 AM EDIT task #9524 (In Progress): Use non-model objects in database queries for getDistributionInfoFor
The webservice for distribution infos is slow for larger distributions sets. This could be much improved if retrievin... Andreas Müller
10:39 AM EDIT Revision b691d5a7 (cdmlib): cleanup and remove SaveEntityListener and SaveOrUpdateEntityListener
Andreas Müller
10:27 AM EDIT Revision a33d468f (cdmlib): cleanup
Andreas Müller
10:10 AM EDIT Revision c729e881 (cdmlib): ref #8297, ref #9521 test for recursive fallback area recognition in filterDistributions
Andreas Müller
10:07 AM EDIT Revision 88ffe656 (cdmlib): cleanup
Andreas Müller

03/10/2021

05:22 PM EDIT feature request #9002: Find suitable symbols for excluded, unplaced, placement doubtful
WGB:
dazu die Ergänzung, dass dies erst dann angegangen werden sollte, wenn die mit dem Placement vs. Secundum ver...
Andreas Müller
02:41 PM EDIT Revision 2d293643 (cdm-server): Merge branch 'release/5.21.0' into develop
jenkins
02:41 PM EDIT Revision ebe71965 (cdm-server): jenkins merging release branch into master (strategy: theirs)
jenkins
02:40 PM EDIT Revision fe984627 (cdm-server): updating poms for branch'release/5.21.0' with non-snapshot versions
jenkins
02:34 PM EDIT bug #6383: fatal error on git push: The remote end hung up unexpectedly
no further hung up incidents on the laptop of andreas kohlbecker.
Still frequent problems on other systems.
Here ...
Andreas Kohlbecker
02:29 PM EDIT feature request #9521 (Closed): Fallback areas in textual representation should always stand alone
I close this we can reopen if something does not work. Andreas Müller
02:18 PM EDIT Revision a17d517c (cdm-webapp): Merge branch 'release/5.21.0' into develop
jenkins
02:18 PM EDIT Revision c0eeb967 (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
jenkins
02:17 PM EDIT Revision 0f771957 (cdm-webapp): updating poms for branch'release/5.21.0' with non-snapshot versions
jenkins
02:17 PM EDIT Revision 2e872e73 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.21.0
jenkins
02:17 PM EDIT Revision d360557a (cdm-vaadin): Merge branch 'release/5.21.0' into develop
jenkins
02:17 PM EDIT Revision 2e23970c (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
jenkins
02:15 PM EDIT Revision 1023f382 (taxeditor): Merge branch 'release/5.21.0' into develop
jenkins
02:15 PM EDIT Revision 6e1ac990 (taxeditor): Merge branch 'release/5.21.0'
jenkins
02:14 PM EDIT Revision 45dc1b61 (cdm-dataportal): Merge branch 'release/5.21.0' into develop
jenkins
02:14 PM EDIT Revision 5ba5f63b (cdm-dataportal): jenkins merging release branch into master (strategy: theirs)
jenkins
02:14 PM EDIT Revision c4798de1 (cdm-dataportal): updating poms for branch'release/5.21.0' with non-snapshot versions
jenkins
02:14 PM EDIT Revision b8ad32ba (cdm-vaadin): updating poms for branch'release/5.21.0' with non-snapshot versions
jenkins
02:14 PM EDIT Revision 77318159 (cdm-dataportal): release-preparation: production level css
jenkins
02:14 PM EDIT Revision c6791922 (cdm-vaadin): jenkins bumping cdmlib.version to 5.21.0
jenkins
02:13 PM EDIT Revision 38c7dd58 (cdmlib): Updating develop poms back to pre merge state
jenkins
02:13 PM EDIT Revision 2fa5a819 (cdmlib): Merge branch 'master' into develop
jenkins
02:13 PM EDIT Revision 0cadc9f9 (cdmlib): updating develop poms to master versions to avoid merge conflicts
jenkins
02:13 PM EDIT Revision 01057299 (cdmlib): Merge branch 'release/5.21.0'
jenkins
01:59 PM EDIT Revision f1acd159 (cdmlib): updating poms for branch'release/5.21.0' with non-snapshot versions
jenkins
01:56 PM EDIT Revision 5f4c8f64 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.21.0-SNAPSHOT
jenkins
01:56 PM EDIT Revision 0975ae43 (cdm-webapp): updating poms for 5.22.0-SNAPSHOT development
jenkins
01:56 PM EDIT Revision e664d511 (cdm-webapp): updating poms for 5.21.0 branch with snapshot versions
jenkins
01:56 PM EDIT Revision 0761dc5e (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.22.0-SNAPSHOT
jenkins
01:47 PM EDIT Revision 82d40599 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.22.0-SNAPSHOT
jenkins
12:58 PM EDIT Revision c7836dd6 (taxeditor): Updated version in pom / project files to taxeditor version : 5.22.0-SNAPSHOT and cdmlib version : 5.22.0-SNAPSHOT
jenkins
12:57 PM EDIT Revision e68970f5 (taxeditor): Updated version in pom / project files to taxeditor version : 5.21.0 and cdmlib version : 5.21.0
jenkins
12:57 PM EDIT Revision 30411c13 (cdm-vaadin): updating poms for 5.22.0-SNAPSHOT development
jenkins
12:57 PM EDIT Revision fdf046c6 (cdm-vaadin): updating poms for 5.21.0 branch with snapshot versions
jenkins
12:57 PM EDIT Revision 138c8990 (cdm-vaadin): jenkins bumping cdmlib.version to 5.22.0-SNAPSHOT
jenkins
12:56 PM EDIT Revision 8e456fc9 (cdm-dataportal): updating poms for 5.22.0-SNAPSHOT development
jenkins
12:56 PM EDIT Revision c5bbbf67 (cdm-server): updating poms for 5.22.0-SNAPSHOT development
jenkins
12:53 PM EDIT Revision 81b11e62 (cdmlib): updating poms for 5.22.0-SNAPSHOT development
jenkins
12:52 PM EDIT task #9513: "table to div regression": replace scriptler + dynamic parameter plugins
last **TODO**
remove
* Dynamic Parameter Plug-in
* Scriptler Plug-in ---> see #9950
Andreas Kohlbecker
12:50 PM EDIT task #9513 (Resolved): "table to div regression": replace scriptler + dynamic parameter plugins
Andreas Kohlbecker
12:33 PM EDIT bug #9491 (Closed): Order of terms in not order relevant trees
Katja Luther
12:31 PM EDIT feature request #9340 (Closed): Workflow support for secundum handling when making synonym a new accepted taxon
The check of homotypic synonym secs is moved to a new ticket (#9523), this ticket can be closed. Katja Luther
12:25 PM EDIT bug #9520 (Closed): Taxonnode parent merge cascade leads to non-transactional behavior
Seems to work as expected. Katja Luther
11:11 AM EDIT Revision d2c49476 (taxeditor): ref #9340: code cleaning
Katja Luther
11:00 AM EDIT Revision 5ade3787 (taxeditor): cleanup
Andreas Müller
10:58 AM EDIT Revision 468542ec (taxeditor): cleanup
Andreas Müller
10:44 AM EDIT Revision 652e719d (taxeditor): fix potential NPE in InverseTermWrapper
Andreas Müller
10:44 AM EDIT Revision e36d3242 (taxeditor): cleanup
Andreas Müller
10:42 AM EDIT feature request #9523 (New): Check secundum of homotypic synonyms when changing accepted taxon to synonym
When changing an accepted taxon to a synonym of another accepted taxon, actually only the secundum of the old accepte... Katja Luther
08:49 AM EDIT Revision 3f482e4c (taxeditor): ref #9340: add comments
Katja Luther

03/09/2021

07:14 PM EDIT Revision 6058f57d (taxeditor): ref #9340: check for different sec in homotypic group
Katja Luther
06:33 PM EDIT Revision 2427a5bb (taxeditor): ref #9340: check for different sec in homotypic group
Katja Luther
06:31 PM EDIT Revision 13172f31 (cdmlib): ref #9340: correct handling for sec
Katja Luther
06:29 PM EDIT feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon
For default preference "Keep when same"
Synonym to accepted, keep
syn ref1, homotypic syn ref2, parent ref3 -> ...
Katja Luther
10:00 AM EDIT feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon
Andreas Müller wrote:
> If an accepted taxon is converted to a synonym (for an accepted taxon with same sec) its hom...
Katja Luther
05:05 PM EDIT feature request #9509 (Closed): IIIF manifest includes media source information
Andreas Kohlbecker
05:05 PM EDIT Revision bab2a431 (cdmlib): ref #9509 adding identifiers and fixing bug
Andreas Kohlbecker
05:05 PM EDIT Revision bd13f8fa (cdmlib): ref #9509 fixing LIEs related to sources and identifiers
Andreas Kohlbecker
05:05 PM EDIT Revision 14ddcf70 (cdmlib): fixing NPE in iiif/ManifestComposer
Andreas Kohlbecker
04:39 PM EDIT Revision 184a2a6b (taxeditor): ref #9340: secundum handling if synonym in HG has different sec
Katja Luther
02:42 PM EDIT Revision 66806a42 (taxeditor): merge taxon after running operations
Katja Luther
02:09 PM EDIT bug #9491 (Feedback): Order of terms in not order relevant trees
Functionality and new code looks looks ok beside this and ticket can be closed. Andreas Müller
12:13 PM EDIT bug #9491: Order of terms in not order relevant trees
Can we rename FeatureTreeViewerComparator to TermTreeViewerComparator? "FeatureTree" is deprecated. Maybe we can run ... Andreas Müller
11:57 AM EDIT bug #9491: Order of terms in not order relevant trees
Can we delete the commented text in CreateDefinedTermOperation? Andreas Müller
09:49 AM EDIT bug #9491 (Resolved): Order of terms in not order relevant trees
Andreas Müller wrote:
> There was still an NPE when editing the title of a tree. I fixed this with a501f1e0 .
>
>...
Katja Luther
01:51 PM EDIT Revision 51e33177 (cdmlib): fix test
Katja Luther
01:28 PM EDIT Revision 98ccaf43 (cdmlib): add name used in source to cdmlight
Katja Luther
11:17 AM EDIT Revision e638fe1d (taxeditor): ref #9340: fix change syn to accept keep sec for homotypic syn
Katja Luther
11:01 AM EDIT Revision dca5b6f7 (cdmlib): ref #9340: fix sec handling for homotypic syn when change synonym to accepted taxon
Katja Luther
10:42 AM EDIT bug #9522: Workflow for reuse name
As the current workflow creates incorrect data we should implement this soon. Andreas Müller
09:28 AM EDIT bug #9522 (New): Workflow for reuse name
when an already existing name is reused for a taxon or synonym the following steps should be done:
* check whether...
Katja Luther
10:31 AM EDIT Revision 07f58f62 (taxeditor): avoid NPE when classification misses name
Katja Luther
10:08 AM EDIT task #9451 (Closed): Cache strategy for classifications is missing
seems to work as expected. Katja Luther
09:59 AM EDIT bug #5670 (Closed): Refresh of Taxon Navigator
Andreas Müller wrote:
> Seems to work.
> Only thing I realized, when creating a new taxon via TaxonNode assistant t...
Katja Luther
09:58 AM EDIT bug #9512 (Closed): Descriptions being created for individual associations in matrix should have description status "Individual association"
Katja Luther
09:47 AM EDIT Revision 03c890d0 (cdmlib): ref #9340: fix sec handling for homotypic syn when moving acc to syn of another acc
Katja Luther
09:05 AM EDIT Revision f42b6825 (cdmlib): ref #9340: fix sec handling for homotypic syn when moving acc to syn of another acc
Katja Luther
09:02 AM EDIT Revision 3c79d7d6 (cdmlib): fix test saveNewTaxonNode
Katja Luther

03/07/2021

11:25 PM EDIT Revision 5014c22f (taxeditor): ref #9405, ref #4944 adapt colors for cache protected fields a bit
Andreas Müller
03:31 PM EDIT Platform Etablierung report #9378: Meeting EDIT Platform documentation 2021-02-22
Sollten wir das nicht lieber auf eine WikiSeite schreiben als in ein Ticket? Andreas Müller
12:47 PM EDIT feature request #9502: Implement subarea preference rule and fallback areas for areas with complex hierarchy
All issues not related to areas with direct multiple parents are fixed with #9521. Now deeper hierarchies with multip... Andreas Müller
12:25 PM EDIT feature request #9502: Implement subarea preference rule and fallback areas for areas with complex hierarchy
ERS:
mir scheint, Du hast die Probleme nun richtig erfasst und dargestellt.
Zur Krim:
Eigentlich ist gewünsc...
Andreas Müller
12:04 PM EDIT task #8671: Distribution in E+M (BM) on different levels
ERS (2020-06-23):
die „Distribution Aggregation“ verhält sich in diesem Fall wie gewollt: ein Unterareal vorhanden...
Andreas Müller
11:39 AM EDIT feature request #9500 (In Progress): Allow removing certain distribution status from distribution publication
ERS:
Für mich hört es sich plausibel an, für die Behandlung von Subarealen mit dem Status undefined besondere Reg...
Andreas Müller
11:36 AM EDIT bug #8297: Fix condensed distribution string for E+M
This should be fixed. Only code cleanup is needed. Andreas Müller
11:36 AM EDIT bug #8297: Fix condensed distribution string for E+M
Andreas Müller wrote:
> ... noch ein kleiner Nachtrag: bei der derzeitigen Implementierung kann es auch dazu kommen,...
Andreas Müller
11:30 AM EDIT bug #8297: Fix condensed distribution string for E+M
Andreas Müller wrote:
> An open issue:
>
> ... sollen im CondensedDistributionString für die Überareale jeweils n...
Andreas Müller

03/06/2021

10:48 PM EDIT Revision 1d41d2cc (cdmlib): ref #9521 handle fallbackarea computation recursively (cont.)
Andreas Müller
08:20 PM EDIT Revision 1eba812b (cdmlib): ref #9521 handle fallbackarea computation recursively
Andreas Müller
05:51 PM EDIT Revision ad034f89 (cdmlib): ref #9521 fix CCE caused by proxy object
Andreas Müller
05:50 PM EDIT Revision bff08cf8 (cdmlib): cleanup
Andreas Müller
04:56 PM EDIT Revision ba676069 (cdmlib): cleanup
Andreas Müller
03:41 PM EDIT Revision 71abfebc (cdmlib): ref #9521 handle exception in controller (cont.)
Andreas Müller
03:39 PM EDIT Revision 6e509e8f (cdmlib): ref #9521 handle exception in controller
Andreas Müller
03:39 PM EDIT Revision feebef03 (cdmlib): cleanup
Andreas Müller
01:50 PM EDIT feature request #9521 (Resolved): Fallback areas in textual representation should always stand alone
Not yet implemented: show fallback areas only if they have sources (currently they are shown if there is an explicit ... Andreas Müller
12:57 PM EDIT feature request #9521 (Closed): Fallback areas in textual representation should always stand alone
Andreas Müller
01:12 PM EDIT Revision c160c389 (cdmlib): ref #9521 fallback areas should not appear in textual hierarchy anymore (cont.)
Andreas Müller
12:58 PM EDIT Revision a04aa53a (cdmlib): ref #9521 fallback areas should not appear in textual hierarchy anymore
Andreas Müller
12:41 PM EDIT Revision b848adf1 (cdmlib): cleanup
Andreas Müller
01:11 AM EDIT Revision 91626e96 (cdmlib): ref #9500, ref #8297 fix undefined filter (cont.)
Andreas Müller
01:11 AM EDIT Revision 7d3af755 (cdmlib): cleanup
Andreas Müller
12:20 AM EDIT Revision 6f6d0ba9 (cdmlib): ref #9500, ref #8297 fix undefined filter
Andreas Müller
12:19 AM EDIT Revision 60de16ad (cdmlib): use long instead of int for count
Andreas Müller
12:19 AM EDIT Revision 91356769 (cdmlib): cleanup
Andreas Müller

03/05/2021

11:48 PM EDIT bug #9520 (Resolved): Taxonnode parent merge cascade leads to non-transactional behavior
This needs intensive reviewing as I removed cascading taxon node to parent.
I tested already that the problem itse...
Andreas Müller
06:20 PM EDIT bug #9520 (Closed): Taxonnode parent merge cascade leads to non-transactional behavior
If a taxon node is changed and saved the update result also contains its parent and also grandparents up to the class... Andreas Müller
11:39 PM EDIT Revision ea17bbe6 (taxeditor): ref #9520 try to fix failing addTaxonNodeCascadeProblem by persisting child first
Andreas Müller
11:38 PM EDIT Revision 761729a1 (taxeditor): invert last commit
Andreas Müller
11:14 PM EDIT Revision 0fbf5418 (taxeditor): Try to find the problem with addTaxonNodeCascadeProblem
Andreas Müller
10:53 PM EDIT Revision 6611185f (taxeditor): cleanup
Andreas Müller
10:44 PM EDIT Revision e657f466 (cdmlib): ref #9500, ref #8297 preliminary add filter for "undefined" status
Andreas Müller
10:41 PM EDIT Revision f9e6793c (cdmlib): ref #3816 add distribution status "undefined" UUID to constants
Andreas Müller
10:29 PM EDIT Revision c5ec3f4d (cdmlib): ref #9520 fix FeatureNodeServiceImplTest which had incorrect test data
Andreas Müller
10:28 PM EDIT Revision 57d188c6 (cdmlib): cleanup
Andreas Müller
09:44 PM EDIT Revision 27b9e776 (cdmlib): ref #9520 fix TaxonNodeServiceImplTest after treeIndex is now correctly triggered
Andreas Müller
09:43 PM EDIT Revision 16076af1 (cdmlib): ref #9520 move treeIndex update to CdmPreDataChangeListener as SaveOrUpdateEntityListener is not always fired
(only when object is explicitly saved or updated) Andreas Müller
09:41 PM EDIT Revision fd734dc9 (cdmlib): ref #9520 fix ClassificationServiceImpl und TaxonServiceImplTest for non-cascading parent node
Andreas Müller
09:39 PM EDIT Revision 117f7bd2 (cdmlib): ref #9520 fix TaxonNodeNaturalComparator for nodes without treeindex (should not really happen)
Andreas Müller
09:12 PM EDIT Revision a419cd3c (cdmlib): cleanup
Andreas Müller
07:46 PM EDIT Revision 200a82b4 (cdmlib): ref #8857 unignore test for #8857
Andreas Müller
07:45 PM EDIT Revision ddbbd267 (cdmlib): cleanup
Andreas Müller
06:36 PM EDIT feature request #9340 (Feedback): Workflow support for secundum handling when making synonym a new accepted taxon
If an accepted taxon is converted to a synonym (for an accepted taxon with same sec) its homotypic synonym having the... Andreas Müller
06:26 PM EDIT feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon
When testing I sometimes (often at the very beginning after I adapted the test data) got very strange results like pu... Andreas Müller
03:21 PM EDIT feature request #9340 (Resolved): Workflow support for secundum handling when making synonym a new accepted taxon
Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > I have not checked but I guess that th...
Katja Luther
06:22 PM EDIT Revision 76512e45 (cdmlib): ref #9520 try to remove cascade from TaxonNode.parent
Andreas Müller
06:10 PM EDIT Revision bcd11716 (cdmlib): cleanup
Andreas Müller
05:34 PM EDIT Revision 72a9e65f (taxeditor): fix NPE if no activeSession exists
Andreas Müller
04:26 PM EDIT bug #9506 (Closed): Rights can not be selected for reuse
This works now. Maybe the server was not restarted when I checked last time. Andreas Müller
04:21 PM EDIT bug #8767 (Closed): Workflow support for publish flag
Yes this can be closed. Andreas Müller
03:17 PM EDIT bug #8767: Workflow support for publish flag
create follow up ticket for the publish check of the whole homotypic group Katja Luther
03:15 PM EDIT bug #8767 (Resolved): Workflow support for publish flag
I think we can close this ticket, I checked all operations mentioned above. Katja Luther
09:39 AM EDIT bug #8767: Workflow support for publish flag
Now also MAN -> Synonym works as expected:
acc 1, MAN 0 => Syn 0 (OK)
acc 1, MAN 1 => Syn 1 (OK)
acc 0, MAN 0 =>...
Katja Luther
12:37 AM EDIT bug #8767: Workflow support for publish flag
Katja Luther wrote:
> Andreas Müller wrote:
> > Katja Luther wrote:
> > > Andreas Müller wrote:
> > > > Tested MA...
Katja Luther
04:04 PM EDIT bug #5670 (Feedback): Refresh of Taxon Navigator
Seems to work.
Only thing I realized, when creating a new taxon via TaxonNode assistant the navigator collapses afte...
Andreas Müller
03:41 PM EDIT bug #5670 (Resolved): Refresh of Taxon Navigator
OK, I will review those which work already. Andreas Müller
03:37 PM EDIT bug #5670: Refresh of Taxon Navigator
Andreas Müller wrote:
> What is about the other open issues which you did not move to the new ticket yet:
>
> * N...
Katja Luther
03:27 PM EDIT bug #5670 (Feedback): Refresh of Taxon Navigator
What is about the other open issues which you did not move to the new ticket yet:
* New Taxon Node / Update Taxon ...
Andreas Müller
02:39 PM EDIT bug #5670 (Closed): Refresh of Taxon Navigator
create open issues ticket #9514 Katja Luther
01:59 PM EDIT bug #5670: Refresh of Taxon Navigator
I tested NameEditor save and swap and both work well.
Only minor question I have is: can we easily avoid refresh c...
Andreas Müller
12:55 PM EDIT bug #5670: Refresh of Taxon Navigator
Andreas Müller wrote:
> Can you please check the lists in the description if they are correct and complete?
>
> (...
Katja Luther
12:43 PM EDIT bug #5670 (Feedback): Refresh of Taxon Navigator
Can you please check the lists in the description if they are correct and complete?
(I still have to wait for the ...
Andreas Müller
12:33 PM EDIT bug #5670: Refresh of Taxon Navigator
open issues can be taken from callhierarchy of WorkbenchEventConstant.REFRESH_NAVIGATOR Andreas Müller
12:08 PM EDIT bug #5670: Refresh of Taxon Navigator
Andreas Müller wrote:
> Now, when changing the name in NameEditor the new taxon is not rearranged within the parent ...
Katja Luther
12:07 PM EDIT bug #5670 (Resolved): Refresh of Taxon Navigator
Applied in changeset commit:taxeditor|9f2b6bf28cb2c5ee2cd57937cbde483e929761c0. Katja Luther
11:58 AM EDIT bug #5670 (Feedback): Refresh of Taxon Navigator
Now, when changing the name in NameEditor the new taxon is not rearranged within the parent taxon yet.
I think you m...
Andreas Müller
03:47 PM EDIT feature request #9519 (New): Add posibilty to add IndividualAssociation descriptions in Facts View
Currently it is not yet possible to set the status of a description manually in the details view. Needs to be discuss... Andreas Müller
03:34 PM EDIT bug #9516: Check publish flag of all homotypic synonyms when moving
As this is a follow up ticket we should implement it soon as it is strongly related to the original ticket. Andreas Müller
03:18 PM EDIT bug #9516 (New): Check publish flag of all homotypic synonyms when moving
see #8767 Katja Luther
03:30 PM EDIT feature request #9514: Open issues for taxon navigator refresh
We should try to handle this in the near future to finish this task which we started in 5.21. Andreas Müller
02:38 PM EDIT feature request #9514 (New): Open issues for taxon navigator refresh
* refresh of navigator only if titleCache of the name is changed.
* open the tree for the new position after move ta...
Katja Luther
03:22 PM EDIT feature request #9518 (Closed): Add symbol to descriptions having status individual association in facts view
Similar to literatur descriptions.
Symbol as a first step can be taken from any symbol used in the specimen tree edi...
Andreas Müller
03:18 PM EDIT feature request #9517 (New): Descriptions with status "IndividualsAssociation" should only support adding of features supporting IndividualAssociations
Currently all allowed features can be added.
The problem exists in Facts View.
Andreas Müller
03:10 PM EDIT feature request #9515 (Closed): Add DescriptionType to TaxonDescription of TaxonAssociations in ABCD import
copied from #9512:
Probably more such descriptions are created by the ABCD import. Katja, can you please check if ...
Katja Luther
03:02 PM EDIT bug #9512 (Feedback): Descriptions being created for individual associations in matrix should have description status "Individual association"
This works, though I just realized that the matrix creates such indAss very seldom as it is only relevant for specime... Andreas Müller
11:19 AM EDIT bug #9512 (Resolved): Descriptions being created for individual associations in matrix should have description status "Individual association"
Applied in changeset commit:cdmlib|8fea24a9b642e10a89b545ac04352bd582c9835c. Katja Luther
10:49 AM EDIT bug #9512 (Closed): Descriptions being created for individual associations in matrix should have description status "Individual association"
Andreas Müller
02:53 PM EDIT Revision 5286a7da (taxeditor): ref #5670: avoid CCE in RefreshTreeHandler
Katja Luther
01:41 PM EDIT Revision dcb5cd20 (taxeditor): Adapt delete label
Andreas Müller
01:37 PM EDIT Revision b9721271 (taxeditor): adapt label
Andreas Müller
01:04 PM EDIT Revision dccf74d0 (taxeditor): ref #5670: updating parent node when changing node in taxonnodewizard
Katja Luther
12:28 PM EDIT Revision f609e74d (taxeditor): cleanup
Andreas Müller
12:21 PM EDIT Revision 6dafedd9 (taxeditor): cleanup
Andreas Müller
12:12 PM EDIT Revision dc8182bb (taxeditor): cleanup
Andreas Müller
12:07 PM EDIT Revision 9f2b6bf2 (taxeditor): fix #5670: refresh parent node to update the order in navigator
Katja Luther
11:59 AM EDIT Revision 425c7a97 (taxeditor): adapt text orientation of unit
Katja Luther
11:54 AM EDIT Revision f24708e4 (taxeditor): adapt text orientation of collector, identifier and country row
Katja Luther
11:44 AM EDIT bug #7521 (Closed): refresh of taxonnavigator sometimes does not work for moving taxonnodes
Seems to work now Andreas Müller
11:28 AM EDIT Revision bf232592 (taxeditor): xxx
Andreas Müller
11:19 AM EDIT Revision 8fea24a9 (cdmlib): fix #9512: add type IndividualAssociation to newly created taxonDescriptions created in characterMatrix
Katja Luther
11:07 AM EDIT task #9513: "table to div regression": replace scriptler + dynamic parameter plugins
downgrading to v2.263 is not easily possible as this will require to downgrade a couple of plugins also Andreas Kohlbecker
10:55 AM EDIT task #9513 (Closed): "table to div regression": replace scriptler + dynamic parameter plugins
Due to the "table to div regression" the [Configure UI is completely broken after upgrade to 2.264](https://issues.je... Andreas Kohlbecker
10:49 AM EDIT Revision 778ddd5e (taxeditor): ref #8767: adapt message for different publish flags in swap acc/syn
Katja Luther
10:13 AM EDIT bug #9481 (Closed): ObjectDeletedException when swap syn and accepted with descriptions belonging to a descriptive dataset
Andreas Müller wrote:
> Works as expected. I did a minor code cleanup. Please check if you think it is correct and c...
Katja Luther
10:11 AM EDIT bug #9481 (Feedback): ObjectDeletedException when swap syn and accepted with descriptions belonging to a descriptive dataset
Works as expected. I did a minor code cleanup. Please check if you think it is correct and close ticket if yes. Andreas Müller
10:06 AM EDIT Revision 652454e2 (cdmlib): ref #9481 simplify description copy code
Andreas Müller
10:04 AM EDIT Revision ea036daf (cdmlib): cleanup
Andreas Müller
09:04 AM EDIT Revision cb7fc5de (taxeditor): label and menu adaptions in character matrix
Katja Luther

03/04/2021

11:17 PM EDIT Revision b8480a47 (cdmlib): fix NPE
Katja Luther
11:08 PM EDIT Revision 527e30cd (taxeditor): set sourcelabel after creating controls
Katja Luther
10:46 PM EDIT Revision ea24e836 (cdmlib): ref #9340: fix handling of secundum for synonyms
Katja Luther
09:28 PM EDIT Revision 686ed38c (cdmlib): ref #9340: same sec handling for all synonyms of the moved accepted taxon
Katja Luther
09:25 PM EDIT Revision 733fcb2d (taxeditor): ref #9340: correct handling of sec for moving one more taxa to synonymy of other taxon
Katja Luther
08:47 PM EDIT feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon
Katja Luther wrote:
> Andreas Müller wrote:
> > I have not checked but I guess that the secundum of other synonyms ...
Andreas Müller
08:36 PM EDIT feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon
Andreas Müller wrote:
> I have not checked but I guess that the secundum of other synonyms in the homotypic group is...
Katja Luther
08:13 PM EDIT feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon
I have not checked but I guess that the secundum of other synonyms in the homotypic group is probably not checked yet... Andreas Müller
07:59 PM EDIT feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon
Andreas Müller wrote:
> I test all other preferences (except for default preference) for change "synonym to accepted...
Andreas Müller
07:46 PM EDIT feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon
I test all other preferences (except for default preference) for change "synonym to accepted taxon" and "change taxon... Andreas Müller
07:39 PM EDIT feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon
Andreas Müller wrote:
> The preference says
>
> ![](picture937-1.png)
>
> Is it true that it is only for thes...
Katja Luther
07:36 PM EDIT feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon
The preference says
![](picture937-1.png)
Is it true that it is only for these 2 operations or should we adapt...
Andreas Müller
07:33 PM EDIT feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon
Katja, can you please run the same type of tests for
* move synonym to another taxon
* move accepted to new pare...
Andreas Müller
07:32 PM EDIT feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon
Further tested change accepted to synonym (with default preference)
Old parent sec2, oldAcc null, newAcc sec1 => w...
Andreas Müller
07:25 PM EDIT feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon
Tested change synonym to accepted taxon (with default preference)
OldAcc sec1, oldSyn sec1, newParent sec1 => newA...
Andreas Müller
06:46 PM EDIT feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon
Tested change accepted to synonym (with default preference)
Old parent sec1, oldAcc sec1, newAcc sec1 => warning (...
Andreas Müller
04:09 PM EDIT feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon
Also the message seems to mention the old accepted taxon but I think finally we decided that here the old accepted ta... Andreas Müller
04:07 PM EDIT feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon
Tested: Syn => Acc
![](picture023-1.png)
The dialogue title and the message seem to be mixed up, they should be...
Andreas Müller
03:59 PM EDIT feature request #9340 (Feedback): Workflow support for secundum handling when making synonym a new accepted taxon
Generally use se**c**undum not sekundum in German dialogues (and elsewhere) as secundum is Latin. I don't think there... Andreas Müller
03:49 PM EDIT feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon
Tested: Syn => MAN and back
In step 1 sec was deleted (OK)
In step 2 sec was added (taken from accepted) - (OK, ...
Andreas Müller
08:45 PM EDIT bug #8767: Workflow support for publish flag
Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > Tested MAN/ppSyn => Syn
> > >
> > >...
Katja Luther
08:40 PM EDIT bug #8767: Workflow support for publish flag
Katja Luther wrote:
> Andreas Müller wrote:
> > Andreas Müller wrote:
> > > Tested change accepted to synonym
> >...
Andreas Müller
08:37 PM EDIT bug #8767: Workflow support for publish flag
Katja Luther wrote:
> Andreas Müller wrote:
> > Tested MAN/ppSyn => Syn
> >
> > acc 1, MAN 0 => Syn 0 (OK)
> > ...
Andreas Müller
07:10 PM EDIT bug #8767: Workflow support for publish flag
Katja Luther wrote:
> Andreas Müller wrote:
>
> > Katja, can you do the same check for "move accepted to new pare...
Katja Luther
07:04 PM EDIT bug #8767: Workflow support for publish flag
Andreas Müller wrote:
> Katja, can you do the same check for "move accepted to new parent". I don't if this is alr...
Katja Luther
06:17 PM EDIT bug #8767: Workflow support for publish flag
Andreas Müller wrote:
> Andreas Müller wrote:
> > Tested change accepted to synonym
> >
> > Old parent 1, old ac...
Katja Luther
06:06 PM EDIT bug #8767: Workflow support for publish flag
Katja, can you do the same check for "move accepted to new parent". I don't if this is already fully fixed, committed... Andreas Müller
06:04 PM EDIT bug #8767: Workflow support for publish flag
Tested move synonym/homotypic group to another taxon
Old acc 1, old syn 1, new acc 1 => new syn 1 w/o warning (OK)...
Andreas Müller
05:48 PM EDIT bug #8767: Workflow support for publish flag
Andreas Müller wrote:
> Tested MAN/ppSyn => Syn
>
> acc 1, MAN 0 => Syn 0 (OK)
> acc 1, MAN 1 => Syn 0 (FALSE)
...
Katja Luther
05:44 PM EDIT bug #8767: Workflow support for publish flag
change synonym to accepted taxon
Old acc 1, old syn 1, new parent 1 => new acc 1 w/o warning (OK)
Old acc 1, old ...
Andreas Müller
05:35 PM EDIT bug #8767: Workflow support for publish flag
Andreas Müller wrote:
> Tested change accepted to synonym
>
> Old parent 1, old acc 1, new acc 1 => new syn 0, w/...
Andreas Müller
05:33 PM EDIT bug #8767: Workflow support for publish flag
Tested change accepted to synonym
Old parent 1, old acc 1, new acc 1 => new syn 0, w/o warning (FALSE, should be 1...
Andreas Müller
05:10 PM EDIT bug #8767: Workflow support for publish flag
Tested MAN/ppSyn => Syn
acc 1, MAN 0 => Syn 0 (OK)
acc 1, MAN 1 => Syn 0 (FALSE)
acc 0, MAN 0 => Syn 0 (OK)
acc...
Andreas Müller
05:00 PM EDIT bug #8767: Workflow support for publish flag
Tested Syn => MAN/ppSyn
acc 1, syn 0 => MAN 0 (OK)
acc 0, syn 1 => MAN 1 (OK)
acc 0, syn 0 => MAN 0 (OK)
Andreas Müller
04:17 PM EDIT bug #8767: Workflow support for publish flag
Katja Luther wrote:
> For operations like swap I do not see the need to test for the parent if the old and the new a...
Andreas Müller
04:10 PM EDIT bug #8767: Workflow support for publish flag
For operations like swap I do not see the need to test for the parent if the old and the new accepted have the same p... Katja Luther
03:37 PM EDIT bug #8767: Workflow support for publish flag
Katja, can you please test correct functionality for each of the above operations and leave a message in this ticket ... Andreas Müller
03:35 PM EDIT bug #8767 (Feedback): Workflow support for publish flag
Testing swap:
* if parent taxon has state 1 and old+new taxon state 2 no warning appears
* if warning appears it ...
Andreas Müller
08:23 PM EDIT Revision 7c992431 (taxeditor): smaller label issues
Katja Luther
08:19 PM EDIT Revision f9c172a1 (taxeditor): add translation for secundum reference pref page label
Katja Luther
07:37 PM EDIT Revision 5f6b535c (cdmlib): ref #9340: fix error for keepWhenSame
Katja Luther
07:09 PM EDIT Revision 7ff96e13 (taxeditor): ref #8767: fix warning for same publish flag when moving taxa
Katja Luther
05:36 PM EDIT Revision c3a27807 (taxeditor): label issues in term editors
Katja Luther
05:34 PM EDIT Revision 61e77456 (taxeditor): ref #8767: check for publish when moving taxon
Katja Luther
05:16 PM EDIT Revision 60558f86 (cdmlib): ref #8767: keep publish flag for MAN -> syn
Katja Luther
05:15 PM EDIT Revision db1b9b38 (cdmlib): ref #8767: keep publish flag for MAN -> syn
Katja Luther
05:03 PM EDIT Revision f92f7076 (cdmlib): ref #8767: add publish status to taxonnodedto
Katja Luther
04:20 PM EDIT Revision eaf81585 (taxeditor): ref #9340: correct message
Katja Luther
04:18 PM EDIT Revision 028f99e1 (taxeditor): ref #9340: title and message where mixed up
Katja Luther
04:09 PM EDIT Revision 78cc32b1 (taxeditor): ref #9340: change sekundum to secundum
Katja Luther
04:04 PM EDIT Revision ceda623b (taxeditor): ref #9340: change sekundum to secundum
Katja Luther
03:55 PM EDIT Revision 807ef200 (taxeditor): small changes in matrix menu
Katja Luther
03:51 PM EDIT bug #9481: ObjectDeletedException when swap syn and accepted with descriptions belonging to a descriptive dataset
fixed. Katja Luther
03:50 PM EDIT bug #9481 (Resolved): ObjectDeletedException when swap syn and accepted with descriptions belonging to a descriptive dataset
Applied in changeset commit:cdmlib|64c76cb2c3937cf979045741195fae0ade7013a6. Katja Luther
03:08 PM EDIT bug #9481 (Feedback): ObjectDeletedException when swap syn and accepted with descriptions belonging to a descriptive dataset
No exception anymore, but it looks like the descriptions are duplicated now.
I ran on Arenaria serpyllifolia Bourg...
Andreas Müller
03:50 PM EDIT Revision 64c76cb2 (cdmlib): fix #9481: fix doubled descriptions
Katja Luther
02:59 PM EDIT Revision 63583e76 (cdmlib): ref 9506: search also for abbrevText and show only the parts available
Katja Luther
02:28 PM EDIT bug #7091 (Closed): Add uri field and abbreviatedText to Righs in supplemental data
seems to work as expected. Andreas Müller
11:36 AM EDIT bug #7091 (Resolved): Add uri field and abbreviatedText to Righs in supplemental data
this should be fixed. Katja Luther
10:05 AM EDIT bug #7091: Add uri field and abbreviatedText to Righs in supplemental data
Licences become more important in future (Chichorieae has such data) so we should try to implement it soon Andreas Müller
02:25 PM EDIT bug #9506 (Feedback): Rights can not be selected for reuse
Katja Luther wrote:
> Andreas Müller wrote:
> > We should also include abbrev and uri if data is not empty (see #70...
Andreas Müller
02:20 PM EDIT bug #9506: Rights can not be selected for reuse
Katja Luther wrote:
> Andreas Müller wrote:
> > Empty values are not handled correctly:
> >
> > ![](picture205-1...
Andreas Müller
11:20 AM EDIT bug #9506 (Resolved): Rights can not be selected for reuse
Andreas Müller wrote:
> We should also include abbrev and uri if data is not empty (see #7091)
this is fixed.
Katja Luther
11:08 AM EDIT bug #9506 (In Progress): Rights can not be selected for reuse
Andreas Müller wrote:
> Empty values are not handled correctly:
>
> ![](picture205-1.png)
>
> I think empty or...
Katja Luther
10:12 AM EDIT bug #9506: Rights can not be selected for reuse
Finally we could add a filter to search only on certain rights types. But this might be another ticket. Andreas Müller
10:11 AM EDIT bug #9506: Rights can not be selected for reuse
We should also include abbrev and uri if data is not empty (see #7091) Andreas Müller
10:09 AM EDIT bug #9506 (Feedback): Rights can not be selected for reuse
Empty values are not handled correctly:
![](picture205-1.png)
I think empty or null values should not show up i...
Andreas Müller
01:07 PM EDIT bug #9510: Improve label for descriptions created via DDS matrix
... ich sehe gerade, dass die obige Labeldiskussion v.a. fürs Portal gedacht war, dennoch vielleicht auch passend für... Andreas Müller
01:03 PM EDIT bug #9510: Improve label for descriptions created via DDS matrix
Auch das Label der Specimen description selber entspricht noch nicht ganz dem, wie wir es mal besprochen haben:
...
Andreas Müller
10:51 AM EDIT bug #9510: Improve label for descriptions created via DDS matrix
The above suggestion are only meant as first ideas. Please feel free to suggest/find better labels. Andreas Müller
10:50 AM EDIT bug #9510 (In Progress): Improve label for descriptions created via DDS matrix
The automatically created label for a new "literature" description is something like {name of DDS}: Factual data set ... Andreas Müller
11:38 AM EDIT bug #8760: Presentation and linking of molecular data in specimen table too unclear
A current working link: http://campanula.e-taxonomy.net/cdm_dataportal/taxon/2e3aa801-7307-409c-bd39-d825f5f1e031/spe... Andreas Müller
11:35 AM EDIT Revision 0fe8c1ba (taxeditor): ref #7091: add abbrev. text and uri to rights
Katja Luther
11:17 AM EDIT Revision 9f92498d (cdmlib): ref 9506: show uri and abbrev text when available
Katja Luther
11:07 AM EDIT Revision 14c8d1f0 (cdmlib): ref 9506: do not show empty rights in rights selection dialog
Katja Luther
11:02 AM EDIT Revision 50ddfe8e (cdm-dataportal): installinv universalviewer version 3.1.1. with patch for UV bug #713
Andreas Kohlbecker
11:01 AM EDIT feature request #9511 (New): Move specimens/individual associations for matrix into same description
If one adds a new specimen description in the matrix for a specimen that is not yet attached as individuals associati... Andreas Müller
10:35 AM EDIT bug #9488 (Closed): Show details of description in character matrix
This works now. Andreas Müller
10:01 AM EDIT bug #6688 (Duplicate): Rights do not show up in rights search if no text is given
duplicates #9506 Andreas Müller

03/03/2021

06:51 PM EDIT feature request #9509: IIIF manifest includes media source information
implemented, formatting of the output my need further improvement Andreas Kohlbecker
06:49 PM EDIT feature request #9509 (Resolved): IIIF manifest includes media source information
Applied in changeset commit:cdmlib|5a1bde2d875ebc302cae81e09f994cae51877b67. Andreas Kohlbecker
06:23 PM EDIT feature request #9509 (Closed): IIIF manifest includes media source information
source data of media entities need to be added to the IIIF manifests.
This need to be implemented into the `Manife...
Andreas Kohlbecker
06:49 PM EDIT Revision 5a1bde2d (cdmlib): fix #9509 adding media.source information to iiif manifest
Andreas Kohlbecker
05:54 PM EDIT feature request #9508 (New): OpenID Connect 1.0 authentication with ORCID
ORCID offers an OpenID Connect 1.0 (a simple identity layer on top of the OAuth 2.0 protocol) service which allows to... Andreas Kohlbecker
02:24 PM EDIT bug #9488 (Resolved): Show details of description in character matrix
Andreas Müller wrote:
> Adding a source was possible but I could not persist the change. After reopening the changes...
Katja Luther
02:01 PM EDIT bug #9506: Rights can not be selected for reuse
is this already for review? Andreas Müller
12:22 PM EDIT bug #9506: Rights can not be selected for reuse
now the search is on text and agent.titlecache and the label contains {text} - {agent.titleCache} - {type.titleCache} Katja Luther
12:20 PM EDIT bug #9506 (Resolved): Rights can not be selected for reuse
Applied in changeset commit:cdmlib|90f0f3376dce0188f40dad490274d666ad82c2c5. Katja Luther
12:44 PM EDIT Revision daa29c68 (taxeditor): ref #9340: add sec check for move synonym to another taxon
Katja Luther
12:14 PM EDIT Revision 90f0f337 (cdmlib): fix #9506: the rights were filtered by text, this fixed now
Katja Luther
11:30 AM EDIT bug #9481 (Resolved): ObjectDeletedException when swap syn and accepted with descriptions belonging to a descriptive dataset
yes please review Katja Luther
11:29 AM EDIT bug #9481: ObjectDeletedException when swap syn and accepted with descriptions belonging to a descriptive dataset
is this for review? Andreas Müller
11:18 AM EDIT Revision 166d445c (taxeditor): ref #9488: add workbench constants
Katja Luther
11:10 AM EDIT Revision 3cccbe35 (taxeditor): ref #9488: fix persisting of changed descriptions
Katja Luther
10:38 AM EDIT feature request #9507: Add ratioTo structure to Character
NK:
Es gibt eine Reihe von Properties, die für Relationen zwischen Strukturen genutzt werden und zu denen in unser...
Andreas Müller
10:36 AM EDIT feature request #9507 (Closed): Add ratioTo structure to Character
Some characters handle the ratio between two structures, e.g. length ratio between corolla and calyx.
For this we ...
Andreas Müller
10:02 AM EDIT Revision b41b2728 (taxeditor): add exception handling in CachingHttpInvokerProxyFactoryBean
Andreas Müller
08:27 AM EDIT feature request #9473: Support moving images to new taxa similar to facts
This is critical as we need it for the new media handling strategy Andreas Müller

03/02/2021

11:10 PM EDIT bug #9506: Rights can not be selected for reuse
The problem is probably that for copyrights usually only an agent and the rights type is given, but no text.
So the ...
Andreas Müller
10:35 PM EDIT bug #9506 (Closed): Rights can not be selected for reuse
The selection dialog for rights does not show any existing data even if "*" is entered.
This happened in the cypru...
Andreas Müller
10:09 PM EDIT bug #9488 (Feedback): Show details of description in character matrix
Adding a source was possible but I could not persist the change. After reopening the changes were missing.
This is...
Andreas Müller
09:40 PM EDIT feature request #3816 (Closed): Create "Undefined" status and choose it for NULL status
Fixed. The update script is handled in separat ticket #9505. Andreas Müller
09:39 PM EDIT feature request #9505 (New): Set missing distribution status to "undefined"
copied from #3816
Before, check which data are affected and think about if it is really necessary.
Andreas Müller
09:33 PM EDIT bug #9491 (Feedback): Order of terms in not order relevant trees
There was still an NPE when editing the title of a tree. I fixed this with a501f1e0 .
It generally works. Only I d...
Andreas Müller
09:21 PM EDIT bug #9504 (Closed): Changing term tree title is not persisted
If I create a new term tree and change the title before saving the title is reset to the default title after saving Andreas Müller
09:15 PM EDIT feature request #9499 (Closed): Make isAbsent editable in DetailsView
This is fixed though "should be disabled for mangaged terms" is not yet implemented. But it seems that this is not ye... Andreas Müller
03:18 PM EDIT feature request #9499 (Resolved): Make isAbsent editable in DetailsView
Applied in changeset commit:taxeditor|a524e7d8a97c00b9274b767e73f75d0a47627da0. Katja Luther
02:11 PM EDIT feature request #9499 (Closed): Make isAbsent editable in DetailsView
For PresenceAbsenceTerm the isAbsent attribute is not yet editable and visible.
As idInVoc (and others) editing sh...
Andreas Müller
08:57 PM EDIT Revision a501f1e0 (taxeditor): ref #9491 fix NPE in comparator
Andreas Müller
08:57 PM EDIT Revision f0f4b490 (taxeditor): cleanup
Andreas Müller
08:38 PM EDIT bug #7107: "Omit level" (TDWG Level2) in distribution hierarchy should not supress distributions source reference
AM:
ich sehe gerade auf http://www.europlusmed.org/cdm_dataportal/taxon/6a8e85bd-5e52-4ae2-9444-99128c87a672, dass...
Andreas Müller
08:19 PM EDIT feature request #9502: Implement subarea preference rule and fallback areas for areas with complex hierarchy
AM:
Problematisch sind derzeit ja noch die Fallback-Areale, die viele Hierarchiestufen haben oder überlappen. Also...
Andreas Müller
07:31 PM EDIT feature request #9502 (Resolved): Implement subarea preference rule and fallback areas for areas with complex hierarchy
#5050 defines the subarea preference rule and also describes implements it for areas Ju, Cz, IJ and LS which are rela... Andreas Müller
08:17 PM EDIT feature request #9500: Allow removing certain distribution status from distribution publication
AM:
Und noch etwas bezüglich undefined:
Im alten Portal werden diese Status ja auch grundsätzlich nicht mitbrüc...
Andreas Müller
08:15 PM EDIT feature request #9500: Allow removing certain distribution status from distribution publication
AM:
In einigen Fällen, und insbesondere in den Fällen, bei denen die Unterareale nur eine undefined Verbreitung ha...
Andreas Müller
03:40 PM EDIT feature request #9500 (Feedback): Allow removing certain distribution status from distribution publication
from #8858#note-14
An even better solution might be to use a term tree for filtering and ordering the distribution...
Andreas Müller
08:14 PM EDIT bug #8297: Fix condensed distribution string for E+M
An open issue:
... sollen im CondensedDistributionString für die Überareale jeweils nur die Unterarealstatus ausge...
Andreas Müller
08:12 PM EDIT task #9501: Find inconsistent higher area distribution status data in E+M
AM:
Ein ähnlicher Fall, der mir nicht ganz klar ist, ist der, wenn es für das Überareal einen Status mit höherer P...
Andreas Müller
07:03 PM EDIT task #9501: Find inconsistent higher area distribution status data in E+M
The results of the query were sent to ERS today. Andreas Müller
07:03 PM EDIT task #9501 (New): Find inconsistent higher area distribution status data in E+M
The distribution status of a higher area (area with subareas) should usually not have a higher status then the highes... Andreas Müller
07:59 PM EDIT feature request #9484 (Rejected): Distinguish default hidden/fallback area handling from empty list of hidden/fallback area markers
In #9502 it was decided that hidden and fallback areas should better be handled by term trees so the current ticket i... Andreas Müller
07:58 PM EDIT feature request #9503 (Closed): Handle term tree of areas and distribution status for distributionInfo in dataportal
This is blocked by #9500 and/or #9502.
See the description there for further information.
Andreas Müller
07:51 PM EDIT bug #9486 (Duplicate): Fallback areas not handled in area hierarchy are not showing up correctly if subarea data exists
This is more or less a duplicate for #9502. Andreas Müller
07:45 PM EDIT feature request #3904 (Closed): EuroMed: Implement filtering rules for distributions
All subtasks and related are closed. Open issues are handled in follow up tickets #9500 (for status) and #9502 (for a... Andreas Müller
07:42 PM EDIT feature request #5050 (Closed): revise the subAreaPreference rule for filtering Distributions
Generally this is fixed. The subarea preference is implemented for map creation. Some open issues with fallback areas... Andreas Müller
07:33 PM EDIT task #8671 (Rejected): Distribution in E+M (BM) on different levels
As the rule is clear that supra-area information should not be shown on maps as long as subarea information is avail... Andreas Müller
07:10 PM EDIT bug #8670 (Closed): Unwanted distribution aggregation/display on 2 levels
As there were no complaints about this issue anymore since the ticket was resolved I close it. Open new ticket for an... Andreas Müller
03:41 PM EDIT bug #8858 (Closed): Ordering of distribution status 'undefined' is not correct in E+M
The new implementation works as expected. The result is for Talinum paniculatum on test is "-● -Md(??M) [aAu(A) pAz(a... Andreas Müller
01:36 PM EDIT bug #8858: Ordering of distribution status 'undefined' is not correct in E+M
Applied in changeset commit:cdmlib|4dccf2d61ae938ff7638aa262de483068859fd3b. Andreas Müller
01:34 PM EDIT bug #8858 (Resolved): Ordering of distribution status 'undefined' is not correct in E+M
The reason why the first fix didn't work is that PresenceAbsenceTerm had it's own compareTo method, including an isPr... Andreas Müller
03:18 PM EDIT Revision a524e7d8 (taxeditor): fix #9499: add isAbsent checkBox to details view
Katja Luther
02:15 PM EDIT bug #9475 (Closed): NameTypeDesignations for existing names in other nom acts can not be created
Andreas Kohlbecker
01:36 PM EDIT Revision 4dccf2d6 (cdmlib): fix #8858 Improve presence/absence handling for PresenceAbsenceTerm.compareTo
Andreas Müller
01:36 PM EDIT Revision 372d9011 (cdmlib): cleanup
Andreas Müller
12:15 PM EDIT feature request #9494 (Closed): Improve UI: Selection of ranks in Name Editor
closing as duplicate Andreas Kohlbecker
09:43 AM EDIT Revision d170d72d (cdmlib): ref #8767: fix publish flag when change man to syn
Katja Luther
09:36 AM EDIT bug #9483 (Closed): LazyInitializationException (LIE) in TaxonNamePopupEditor when selecting trinominal rank
Andreas Kohlbecker
09:36 AM EDIT feature request #8981 (Closed): Improve NameStatus in UI
Andreas Kohlbecker
09:34 AM EDIT Revision 24398f04 (cdmlib): minor
Andreas Müller
09:33 AM EDIT feature request #9498 (Closed): Password Recovery, Registration and Login Dialog Tab fully functional
this is needed for the cdm-vaadin login dialog tab "Password Recovery " Andreas Kohlbecker
09:32 AM EDIT feature request #9497 (Closed): User self registration service
this is needed for the cdm-vaadin login dialog tab "Register" Andreas Kohlbecker
09:03 AM EDIT Revision 5e7f74f5 (taxeditor): smaller label issues
Katja Luther

03/01/2021

11:36 PM EDIT Revision 56fcd434 (cdmlib): cleanup
Andreas Müller
10:10 PM EDIT feature request #9496 (New): Handling fossil taxa
unsure how to do this.
PhycoBank need a "fossil" flag.
Where to place this?
In databases, a name is flaged as f...
Wolf-Henning Kusber
10:06 PM EDIT feature request #9495 (New): Add eISSN and eISBN fields if a publication is hard copy and electronic
ISSN should be supplemented by a eISSN field
ISBN should be supplemented by a eISBN field
Field name to be discus...
Wolf-Henning Kusber
10:01 PM EDIT feature request #9494 (Closed): Improve UI: Selection of ranks in Name Editor
The normal usecase is that 95% of name registrations are using just 5 ranks.
Some ranks in the selection are irrelev...
Wolf-Henning Kusber
09:46 PM EDIT bug #9493 (New): Duplicate of species epithet when an existing species name is used for typification
After selection of an existing species name for typification, the selection of species epithets in the Name editor sh... Wolf-Henning Kusber
07:50 PM EDIT feature request #9492: Improve NameStatus in UI - new
"Icn Shenzhen 2017" is not needed for PhycoBank
ICN is not the title
the year of publication is 2018
This is a...
Wolf-Henning Kusber
07:19 PM EDIT feature request #9492 (New): Improve NameStatus in UI - new
Follow up zu #8981
Currently the fields are shown:
Status type // Reference // Reference detail // Rule considere...
Wolf-Henning Kusber
07:21 PM EDIT feature request #8981: Improve NameStatus in UI
This ticket can be closed.
new ticket: #9492
Wolf-Henning Kusber
06:40 PM EDIT bug #9491 (Resolved): Order of terms in not order relevant trees
Changed to client side ordering because the server does not know about the preference "Show Id in Vocabulary" for the... Katja Luther
05:01 PM EDIT bug #9491 (Closed): Order of terms in not order relevant trees
The order of not order relevant trees in term tree editors should be alphabetic. Katja Luther
06:40 PM EDIT Revision 1a4389ec (taxeditor): ref #9491: do the ordering on editor side - code cleaning
Katja Luther
06:31 PM EDIT Revision 0073b027 (cdmlib): ref #9491: revert changes in cdmlib
Katja Luther
06:26 PM EDIT Revision 85f422a4 (taxeditor): ref #9491: do the ordering on editor side
Katja Luther
06:20 PM EDIT bug #9475: NameTypeDesignations for existing names in other nom acts can not be created
The name type section works for new genera names as well as for expisting names as expected.
The recorded error was ...
Wolf-Henning Kusber
04:06 PM EDIT bug #9475: NameTypeDesignations for existing names in other nom acts can not be created
I cant see any problem.
Here you can see me choosing the section (non sense data) of the typifying authors:
![]...
Andreas Kohlbecker
05:58 PM EDIT bug #9483: LazyInitializationException (LIE) in TaxonNamePopupEditor when selecting trinominal rank
Trinominals can be created and stored. If this is due to #9483 this ticket can be closed. Wolf-Henning Kusber
04:50 PM EDIT bug #9483: LazyInitializationException (LIE) in TaxonNamePopupEditor when selecting trinominal rank
new ticket for possibly better solution #9490 Andreas Kohlbecker
03:11 PM EDIT bug #9483: LazyInitializationException (LIE) in TaxonNamePopupEditor when selecting trinominal rank
Hi Henning, this issue can be reviewed again. Andreas Kohlbecker
03:08 PM EDIT bug #9483: LazyInitializationException (LIE) in TaxonNamePopupEditor when selecting trinominal rank
Usually we are passing initStrategies to the service methods in order to initialize associated entities. In this case... Andreas Kohlbecker
05:50 PM EDIT bug #9485 (Closed): TaxonNamePopupEditor: StackOverflow on selecting ICN reference
Andreas Kohlbecker
05:43 PM EDIT bug #9485: TaxonNamePopupEditor: StackOverflow on selecting ICN reference
works as expected, ticket can be closed. Wolf-Henning Kusber
10:38 AM EDIT bug #9485 (Resolved): TaxonNamePopupEditor: StackOverflow on selecting ICN reference
Applied in changeset commit:cdm-vaadin|3035e8761cb98d17cd8c2874305069953d656310. Andreas Kohlbecker
08:23 AM EDIT bug #9485 (Closed): TaxonNamePopupEditor: StackOverflow on selecting ICN reference
Selection of a ICN reference causes an error

Name editor, new name goto nom.inval., select nom.inval.
Sele...
Andreas Kohlbecker
05:35 PM EDIT Revision 520afc6d (cdmlib): fix #9483 better solution by using rankClass only - restoring chanches after merge with previous cleanup
Andreas Kohlbecker
05:23 PM EDIT Revision 6d804466 (cdmlib): fix #9483 better solution by using rankClass only
Andreas Kohlbecker
05:04 PM EDIT bug #9488 (Resolved): Show details of description in character matrix
this should be fixed, please review Katja Luther
04:09 PM EDIT bug #9488 (Closed): Show details of description in character matrix
mail NK:
wenn ich in der Matrix mit dem Kontext-Menu zu einem Taxon "Create literature description" hinzufüge, bek...
Katja Luther
04:51 PM EDIT bug #8312 (Closed): Test, fix, improve and run Transmission engine for E+M
This should be fixed with the implementation of transmission engine and following unified description aggregation as ... Andreas Müller
04:50 PM EDIT task #9490 (Closed): avoid rank entity in TaxonNameParts
... vielleicht kann man den auch loswerden .... rankSpecificNamePart
kann man auch sofort bei der Bildung des DTO a...
Andreas Kohlbecker
04:43 PM EDIT feature request #2625 (Closed): [E+M Overview] Data aggregation functionalities for E+M (TransmissionEngine)
This should be fixed with the transmission engine implementations (see subtasks) and with the implementation of descr... Andreas Müller
04:19 PM EDIT Revision 48671d79 (cdmlib): add _ to label to add the new term at the beginning of the terms list
Katja Luther
04:13 PM EDIT Revision 97eff560 (cdmlib): cleanup
Andreas Müller
04:12 PM EDIT bug #9489 (New): Fix header of character matrix for hierarchical characters
mail NK:
Matrix header: für den Matrix header in der obersten Hierarchie-Ebene, also 1. Spaltenüberschiriftenzeile...
Katja Luther
04:10 PM EDIT Revision 7e689eb5 (taxeditor): ref #9488: fix details view for descriptions in character matrix
Katja Luther
04:09 PM EDIT bug #9470 (Closed): CollectionDTO constructor prevent from circles
Andreas Kohlbecker
04:07 PM EDIT Revision 683c7385 (cdm-vaadin): fixing bug in NameTypeDesignationPresenter
Andreas Kohlbecker
03:24 PM EDIT feature request #9487 (New): Split state (and/or other big) vocabularies
mail NK:
Das Handling großer Vokabulare (States!) ist immer noch recht mühselig, wegen langer Lade- und Speicherzeit...
Katja Luther
03:21 PM EDIT Revision cb271641 (cdmlib): cleanup
Andreas Kohlbecker
03:21 PM EDIT Revision a05e4acf (cdmlib): fix #9483 initializing rank.vocabulary in the TaxonNameParts constructor - comment
Andreas Kohlbecker
03:20 PM EDIT Revision e9f80908 (cdmlib): children of termnodedto should be ordered alphabetically when not order relevant - continue
Katja Luther
03:20 PM EDIT Revision b858a126 (cdmlib): children of termnodedto should be ordered alphabetically when not order relevant - continue
Katja Luther
03:18 PM EDIT bug #9476 (Closed): SpecimenTypeDesignations for existing names in other nom acts can not be created
Andreas Kohlbecker
03:10 PM EDIT Revision d10e9a39 (cdmlib): fix #9483 initializing rank.vocabulary in the TaxonNameParts constructor
Andreas Kohlbecker
02:19 PM EDIT bug #8310 (Closed): Issues to solve in E+M shapefile
I think generally we can close this ticket. Open and new issues can be handled in separate tickets like #9367. Open i... Andreas Müller
12:51 PM EDIT bug #8310: Issues to solve in E+M shapefile
There is another open issue reported in #9367 Andreas Müller
02:08 PM EDIT bug #4409: fallback areas are not adressable in the shape file
Andreas Müller wrote:
> This seems to be fully fixed except for the Baltic states issue handled in #9367. TCS is now...
Andreas Müller
01:25 PM EDIT bug #4409 (Closed): fallback areas are not adressable in the shape file
This seems to be fully fixed except for the Baltic states issue handled in #9367. TCS is now shown as 1 area if no su... Andreas Müller
11:05 AM EDIT bug #4409 (Resolved): fallback areas are not adressable in the shape file
Andreas Müller wrote:
> This should be fixed now. Either with #8858 or already before. Open issues are otherwise han...
Andreas Müller
10:59 AM EDIT bug #4409 (Closed): fallback areas are not adressable in the shape file
This should be fixed now. Either with #8858 or already before. Open issues are otherwise handled in #8297 and related... Andreas Müller
02:05 PM EDIT bug #9486 (Duplicate): Fallback areas not handled in area hierarchy are not showing up correctly if subarea data exists
followup from #4409
In #4409 correct handling of fallback areas like Ju, Cz, IJ and LS in maps have been fixed. Un...
Andreas Müller
01:53 PM EDIT bug #6383: fatal error on git push: The remote end hung up unexpectedly
log from a hangup:
~~~
Mar 01 13:40:35 edit-community systemd[1]: Starting user-0.slice.
Mar 01 13:40:35 edit-co...
Andreas Kohlbecker
01:49 PM EDIT bug #6383: fatal error on git push: The remote end hung up unexpectedly
hung up still happen
attempt to find the cause by more loggin by logging the post-receive script execution with sy...
Andreas Kohlbecker
01:40 PM EDIT Revision a5cc95ce (cdmlib): children of termnodedto should be ordered alphabetically when not order relevant
Katja Luther
01:13 PM EDIT bug #9478 (Closed): required ToOneRelatedEntityCombobox field in SpecimenTypeDesignationDTORow fails validation
no regression occurs in the case described in #7245
no duplicate of #8249
and fully solved
Andreas Kohlbecker
12:34 PM EDIT Revision b0f33c74 (cdmlib): ref #9481: move the descriptions to the new taxon to avoid DDS when deleting the old taxon
Katja Luther
11:33 AM EDIT bug #9480 (Closed): SpecimenTypeDesignationEditor: designationReference --> new should be limited to sections of the publishedUnit
Andreas Kohlbecker
10:38 AM EDIT Revision 3035e876 (cdm-vaadin): fix #9485 fixing stack overflow on setting component error
Andreas Kohlbecker
09:50 AM EDIT bug #8297: Fix condensed distribution string for E+M
AM:
auf introduced: doubtfully introduced (perhaps cultivated only) bist du noch nicht explizit eingegangen in de...
Andreas Müller

02/27/2021

08:27 AM EDIT bug #8297 (Resolved): Fix condensed distribution string for E+M
This should be fixed now and can be reviewed on test or on production after the next release Andreas Müller
08:25 AM EDIT bug #8858 (Closed): Ordering of distribution status 'undefined' is not correct in E+M
Andreas Müller wrote:
> Another solution is implementing #3816
This solution finally has been implemented. The st...
Andreas Müller

02/26/2021

11:44 PM EDIT Revision 455700e0 (cdmlib): ref #8297 handle fallback areas correctly in CondensedDistributionComposer
Andreas Müller
07:06 PM EDIT Revision 58c7c564 (taxeditor): enable service time logging
Katja Luther
07:05 PM EDIT Revision 2b5b8997 (cdmlib): ref #8297, ref #9484 temporarily handle isEmpty similar to use default until #9484 is fixed
Andreas Müller
07:03 PM EDIT feature request #9484 (Rejected): Distinguish default hidden/fallback area handling from empty list of hidden/fallback area markers
The current default CondensedDistributionConfiguration uses the euro+med marker types for hidden and fallback areas a... Andreas Müller
06:47 PM EDIT Revision 492fde02 (taxeditor): ref #8767: label issues
Katja Luther
06:23 PM EDIT bug #9475: NameTypeDesignations for existing names in other nom acts can not be created
existing genus name selected, fine.
Name type designation editor opened, fine.
Type selected, fine.
Species name ...
Wolf-Henning Kusber
03:42 PM EDIT bug #9475: NameTypeDesignations for existing names in other nom acts can not be created
please review Andreas Kohlbecker
06:17 PM EDIT bug #5206 (Closed): Status symbols in condensed distribution string repeated for subareas
This should be fixed and can be reviewed together with #8297. It is more or less a duplicate and therefore I close it. Andreas Müller
06:14 PM EDIT bug #9476: SpecimenTypeDesignations for existing names in other nom acts can not be created
works as expected, ticket can be closed. Wolf-Henning Kusber
03:44 PM EDIT bug #9476 (Resolved): SpecimenTypeDesignations for existing names in other nom acts can not be created
Andreas Kohlbecker
03:43 PM EDIT bug #9476 (In Progress): SpecimenTypeDesignations for existing names in other nom acts can not be created
please review Andreas Kohlbecker
06:06 PM EDIT bug #9480: SpecimenTypeDesignationEditor: designationReference --> new should be limited to sections of the publishedUnit
function as expected, ticket can be closed. Wolf-Henning Kusber
03:41 PM EDIT bug #9480: SpecimenTypeDesignationEditor: designationReference --> new should be limited to sections of the publishedUnit
please review Andreas Kohlbecker
01:53 PM EDIT bug #9480 (Resolved): SpecimenTypeDesignationEditor: designationReference --> new should be limited to sections of the publishedUnit
Applied in changeset commit:cdm-vaadin|8195658eef52a7189fd6c622d34b020516db9ed5. Andreas Kohlbecker
05:57 PM EDIT bug #9483: LazyInitializationException (LIE) in TaxonNamePopupEditor when selecting trinominal rank
Review: Internal error when selecting variety of form, instead of opening a third field for the last epithet. Wolf-Henning Kusber
03:40 PM EDIT bug #9483: LazyInitializationException (LIE) in TaxonNamePopupEditor when selecting trinominal rank
please review Andreas Kohlbecker
02:38 PM EDIT bug #9483 (Resolved): LazyInitializationException (LIE) in TaxonNamePopupEditor when selecting trinominal rank
Applied in changeset commit:cdmlib|e20135dca8ba5443b97814e31ad18cdc93036865. Andreas Kohlbecker
02:27 PM EDIT bug #9483 (Closed): LazyInitializationException (LIE) in TaxonNamePopupEditor when selecting trinominal rank
The LIE occurs in `public String rankSpecificNamePart()` at `rank.isHigher(Rank.GENUS())` which internally calls `Or... Andreas Kohlbecker
04:36 PM EDIT bug #9482 (Closed): NameTypeDesignationEditor: designationReference --> new causes LIE
Andreas Kohlbecker
04:00 PM EDIT bug #9482: NameTypeDesignationEditor: designationReference --> new causes LIE
limitation works already, only the LIE is a problem Andreas Kohlbecker
01:55 PM EDIT bug #9482: NameTypeDesignationEditor: designationReference --> new causes LIE
Currently creating new reference is blockes by a
~~~
org.hibernate.LazyInitializationException: could not initia...
Andreas Kohlbecker
01:53 PM EDIT bug #9482 (Closed): NameTypeDesignationEditor: designationReference --> new causes LIE
in some cases creating new reference is blocked by a
~~~
org.hibernate.LazyInitializationException: could not in...
Andreas Kohlbecker
04:36 PM EDIT Revision 53c22678 (cdm-vaadin): ref #9482 fixing init strategy for description source reference
Andreas Kohlbecker
03:38 PM EDIT Revision 5c297207 (cdmlib): ref #9482 fixing init strategy for description source reference
Andreas Kohlbecker
03:16 PM EDIT Revision 413be67f (cdm-vaadin): fixing compiler problem with generic type var
Andreas Kohlbecker
03:10 PM EDIT Revision 57902109 (cdm-vaadin): cleanup
Andreas Kohlbecker
03:04 PM EDIT Revision 891e4775 (cdm-vaadin): cleanup
Andreas Kohlbecker
02:37 PM EDIT Revision e20135dc (cdmlib): fix #9483 adapting bean initialization in .TaxonNameDaoHibernateImpl.prepareFindTaxonNameParts(..) to new? rank compare
Andreas Kohlbecker
01:51 PM EDIT Revision 8195658e (cdm-vaadin): fix #9480 SpecimenTypeDesignationEditor: limiting designationReference editing to sections of published unit
Andreas Kohlbecker
12:08 PM EDIT bug #8297: Fix condensed distribution string for E+M
ERS:
für native: reported in error gilt das gleiche wie für introduced: reported in error, ein Minus - vor dem Kür...
Andreas Müller
12:07 PM EDIT bug #9481 (Closed): ObjectDeletedException when swap syn and accepted with descriptions belonging to a descriptive dataset
While swapping synonym to taxon, the descriptions are cloned but cannot be deleted with the old accepted taxon becaus... Katja Luther
11:35 AM EDIT bug #5670 (Resolved): Refresh of Taxon Navigator
I put this to resolved so I have it on the review list.
Before closing the ticket we should create a new ticket for ...
Andreas Müller
10:28 AM EDIT bug #5670: Refresh of Taxon Navigator
in #note-7 the steps already solved are described, if there are other issues we should create a new ticket or keep th... Katja Luther
11:32 AM EDIT feature request #9340 (Resolved): Workflow support for secundum handling when making synonym a new accepted taxon
I put this ticket to resolved so I have it in the review list. Before closing the ticket we should move open issues t... Andreas Müller
11:31 AM EDIT feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon
Can you add a list to the description, which other operations are planned to have this workflow support? Andreas Müller
10:19 AM EDIT feature request #9340: Workflow support for secundum handling when making synonym a new accepted taxon
please review the already implemented workflows Katja Luther
11:24 AM EDIT Revision 4770809e (taxeditor): ref 5670: refresh of parent node in navigator after swap accepted and synonym
Katja Luther
11:19 AM EDIT Revision ebe49c04 (taxeditor): adapt order in menu of name editor
Katja Luther
11:09 AM EDIT Revision 1a86c162 (taxeditor): ref 5670: refresh of navigator after swap accepted and synonym
Katja Luther
11:06 AM EDIT Revision 82d445b4 (cdmlib): cleanup and make NPE location clearer
Andreas Müller
10:26 AM EDIT bug #7521 (Resolved): refresh of taxonnavigator sometimes does not work for moving taxonnodes
this should also be fixed while working on #5670 Katja Luther
10:09 AM EDIT bug #8198: Deleting an image gallery from image gallery view shows wrong configuration dialog
works now Andreas Müller
10:08 AM EDIT bug #8198 (Closed): Deleting an image gallery from image gallery view shows wrong configuration dialog
Andreas Müller
08:05 AM EDIT bug #8767 (Resolved): Workflow support for publish flag
implemented the publish check also for accepted to syn. Katja Luther
07:55 AM EDIT bug #9467 (Closed): AssertionFailedException when opening DefaultFeatureTreePreference and preference should not allow multi-select
Andreas Müller wrote:
> Andreas Müller wrote:
> > Multi-select is still possible:
> > ![](picture658-1.png)
>
...
Katja Luther

02/25/2021

05:20 PM EDIT bug #9480 (Closed): SpecimenTypeDesignationEditor: designationReference --> new should be limited to sections of the publishedUnit
Andreas Kohlbecker
05:15 PM EDIT Revision 3776382f (cdm-vaadin): ref #9475 fixing NameTypeDesignations for existing names in other nom acts can not be created
Andreas Kohlbecker
04:58 PM EDIT bug #9479 (Closed): ToOneRelatedEntityCombobox misses sending ValueChanged events to MBeanFieldGroup
Andreas Kohlbecker
03:05 PM EDIT bug #9479 (Resolved): ToOneRelatedEntityCombobox misses sending ValueChanged events to MBeanFieldGroup
Applied in changeset commit:cdm-vaadin|f2a3bcfd9db13c5182ad648cf848d50df85a78d1. Andreas Kohlbecker
03:03 PM EDIT bug #9479 (Closed): ToOneRelatedEntityCombobox misses sending ValueChanged events to MBeanFieldGroup
the SpecimenTypeDesignationDTORow contains the `ToOneRelatedEntityCombobox<Reference> designationReference`
The fie...
Andreas Kohlbecker
04:25 PM EDIT bug #8767: Workflow support for publish flag
Katja Luther wrote:
> Changing an unpublished accepted to a synonym of an published accepted taxon, how should we ha...
Andreas Müller
11:35 AM EDIT bug #8767: Workflow support for publish flag
Changing an unpublished accepted to a synonym of an published accepted taxon, how should we handle this? Keep the pub... Katja Luther
09:55 AM EDIT bug #8767: Workflow support for publish flag
By the way, currently this is handled as an info (i) but I think a warning would be better. Andreas Müller
09:54 AM EDIT bug #8767: Workflow support for publish flag
Andreas Müller wrote:
> Accordingly we should check ALL operations to handle the publish flag correctly.
E.g. als...
Andreas Müller
09:49 AM EDIT bug #8767: Workflow support for publish flag
Andreas Müller wrote:
> The message pops up 2x now
I can not reproduce this anymore.
Andreas Müller
09:45 AM EDIT bug #8767: Workflow support for publish flag
Andreas Müller wrote:
> The message pops up 2x now
With the actual nightly build I can not reproduce this.
Katja Luther
09:42 AM EDIT bug #8767: Workflow support for publish flag
Accordingly we should check ALL operations to handle the publish flag correctly. Andreas Müller
09:42 AM EDIT bug #8767: Workflow support for publish flag
Also swapping synonym with accepted has strange behavior: only the names swap but the publish flag stays. E.g. if old... Andreas Müller
09:26 AM EDIT bug #8767 (Feedback): Workflow support for publish flag
The message pops up 2x now Andreas Müller
04:23 PM EDIT bug #9467: AssertionFailedException when opening DefaultFeatureTreePreference and preference should not allow multi-select
Andreas Müller wrote:
> Multi-select is still possible:
> ![](picture658-1.png)
If this is fixed, yes.
Andreas Müller
11:30 AM EDIT bug #9467: AssertionFailedException when opening DefaultFeatureTreePreference and preference should not allow multi-select
so we can close this ticket? Katja Luther
10:01 AM EDIT bug #9467: AssertionFailedException when opening DefaultFeatureTreePreference and preference should not allow multi-select
Katja Luther wrote:
> Andreas Müller wrote:
> > Wir sollten auch das Label noch anpassen für beide Fenster.
> >
...
Andreas Müller
10:00 AM EDIT bug #9467: AssertionFailedException when opening DefaultFeatureTreePreference and preference should not allow multi-select
Andreas Müller wrote:
> Katja Luther wrote:
> > Andreas Müller wrote:
> > > Im Deutschen: Default Merkmalsbaum => ...
Katja Luther
09:59 AM EDIT bug #9467: AssertionFailedException when opening DefaultFeatureTreePreference and preference should not allow multi-select
Katja Luther wrote:
> Andreas Müller wrote:
> > Im Deutschen: Default Merkmalsbaum => Standard Merkmalsbaum
Is t...
Andreas Müller
09:24 AM EDIT bug #9467: AssertionFailedException when opening DefaultFeatureTreePreference and preference should not allow multi-select
Andreas Müller wrote:
> Wir sollten auch das Label noch anpassen für beide Fenster.
>
> Im Deutschen: Default Mer...
Katja Luther
09:11 AM EDIT bug #9467: AssertionFailedException when opening DefaultFeatureTreePreference and preference should not allow multi-select
Außerdem sollten wir die Reihenfolge ändern, die nat. lang. descriptions sind unwichtig, und sollten daher nach unten Andreas Müller
09:10 AM EDIT bug #9467: AssertionFailedException when opening DefaultFeatureTreePreference and preference should not allow multi-select
Wir sollten auch das Label noch anpassen für beide Fenster.
Im Deutschen: Default Merkmalsbaum => Standard Merkmal...
Andreas Müller
08:56 AM EDIT bug #9467 (Feedback): AssertionFailedException when opening DefaultFeatureTreePreference and preference should not allow multi-select
Multi-select is still possible:
![](picture658-1.png)
Andreas Müller
03:21 PM EDIT Revision cc55de8f (cdmlib): cleanup
Andreas Müller
03:21 PM EDIT Revision dd4317ec (cdmlib): ref #8297 use CondensedDistributionConfiguration instead -Recipe where possible and improve hidden+fallbackArea handling
Andreas Müller
03:05 PM EDIT Revision f2a3bcfd (cdm-vaadin): fix #9479 passing ValueChangedListener add remove to inner lazySelect
Andreas Kohlbecker
02:54 PM EDIT Revision e67bdcf7 (cdm-vaadin): cleanup
Andreas Kohlbecker
02:48 PM EDIT bug #9478 (Resolved): required ToOneRelatedEntityCombobox field in SpecimenTypeDesignationDTORow fails validation
Applied in changeset commit:cdm-vaadin|36c60299426da3a4ae7f9c90ba0568d8e9e64402. Andreas Kohlbecker
02:41 PM EDIT bug #9478 (In Progress): required ToOneRelatedEntityCombobox field in SpecimenTypeDesignationDTORow fails validation
Andreas Kohlbecker
02:38 PM EDIT bug #9478 (Closed): required ToOneRelatedEntityCombobox field in SpecimenTypeDesignationDTORow fails validation
the SpecimenTypeDesignationDTORow contains the `ToOneRelatedEntityCombobox<Reference> designationReference`
When se...
Andreas Kohlbecker
02:48 PM EDIT Revision 36c60299 (cdm-vaadin): fix #9478 fixing validation problem in ToOneRelatedEntityCombobox
Andreas Kohlbecker
01:55 PM EDIT Revision 7eaf3bb5 (taxeditor): ref #8767: add warning dialog for change acc to syn for different puplish flags - continue
Katja Luther
12:56 PM EDIT Revision 7c96f526 (taxeditor): ref #8767: add warning dialog for change acc to syn for different puplish flags
Katja Luther
12:55 PM EDIT Revision 8bc0e09e (cdmlib): ref #8767: fix publish flag when change accepted to syn
Katja Luther
12:52 PM EDIT Revision 84d9b190 (cdmlib): ref #8767: fix publish flag when swap syn and accepted
Katja Luther
11:35 AM EDIT Revision 39f4b8b1 (cdm-vaadin): cleanup
Andreas Kohlbecker
11:28 AM EDIT bug #8198 (Resolved): Deleting an image gallery from image gallery view shows wrong configuration dialog
Katja Luther
10:24 AM EDIT bug #8198: Deleting an image gallery from image gallery view shows wrong configuration dialog
Andreas Müller wrote:
> Katja Luther wrote:
> > The configuration wizard is only shown for persisted media now and ...
Katja Luther
10:12 AM EDIT bug #8198: Deleting an image gallery from image gallery view shows wrong configuration dialog
Katja Luther wrote:
> Andreas Müller wrote:
> > Andreas Müller wrote:
> > > The exception is fixed now. However, t...
Andreas Müller
10:08 AM EDIT bug #8198 (Feedback): Deleting an image gallery from image gallery view shows wrong configuration dialog
Andreas Müller
10:06 AM EDIT bug #8198: Deleting an image gallery from image gallery view shows wrong configuration dialog
Katja Luther wrote:
> The configuration wizard is only shown for persisted media now and only if media exist.
it ...
Andreas Müller
11:23 AM EDIT Revision 8f180179 (taxeditor): ref #8767: add warning dialog instead of info dialog
Katja Luther
11:21 AM EDIT Revision fef9b989 (taxeditor): ref #8767: add warning dialog instead of info dialog
Katja Luther
11:17 AM EDIT Revision c0c89a30 (cdm-vaadin): ref #9476 passing citationUuid with SpecimenTypeDesignationWorkingsetIds to editor
Andreas Kohlbecker
11:14 AM EDIT Revision 7dc4a834 (cdm-vaadin): ref ##9476 passing citationUuid with SpecimenTypeDesignationWorkingsetIds to editor
Andreas Kohlbecker
10:36 AM EDIT Revision 245b2535 (cdmlib): ref #9475 fixing problems caused by implementation for #9324 - changing NameTypeDesignationWorkingsetIds strategy again - cdmlib part
Andreas Kohlbecker
10:35 AM EDIT Revision d47bbcb9 (cdm-vaadin): cleanup
Andreas Kohlbecker
10:32 AM EDIT Revision 73c98fbf (taxeditor): ref #8767: add warning also for move syn and swap syn and accepted
Katja Luther
10:27 AM EDIT bug #9477 (Closed): New ordered terms do not have correct order index
If a new term is added to a new ordered term vocabulary the term is not put to the correct position. Instead it is mo... Andreas Müller
10:23 AM EDIT Revision e086828e (taxeditor): ref #8198: correct handling of empty gallery
Katja Luther
09:56 AM EDIT Revision 4a39cb5e (taxeditor): ref #9467: do not allow multiselect and order of elements
Katja Luther

02/24/2021

11:15 PM EDIT bug #8297: Fix condensed distribution string for E+M
AM:
für folgende Status bräuchte ich noch die korrekten Symbole:
• native: reported in error => „-“ ? Genaus...
Andreas Müller
04:07 PM EDIT bug #8297: Fix condensed distribution string for E+M
ERS (2020-06-23):
Unterareale sollten ja eigentlich in Klammern nach dem Hauptareal zusammengefasst werden, also d...
Andreas Müller
03:27 PM EDIT bug #8297: Fix condensed distribution string for E+M
Bellis perennis on test: http://test.e-taxonomy.eu/dataportal/preview/euromed/cdm_dataportal/taxon/0eb6ca37-3365-4af5... Andreas Müller
10:03 PM EDIT feature request #3816 (Resolved): Create "Undefined" status and choose it for NULL status
I added the term. We should split the update script to another ticket. Andreas Müller
05:39 PM EDIT feature request #3816: Create "Undefined" status and choose it for NULL status
The new status should be last in vocabulary as discussed for ordering in E+M Andreas Müller
05:37 PM EDIT feature request #3816: Create "Undefined" status and choose it for NULL status
use uuid from E+M undefined status and move E+M term to existing vocabulary Andreas Müller
10:00 PM EDIT Revision 8b7c16f0 (cdmlib): ref #3816, ref #8858 add "undefined" to PAT vocabulary
Andreas Müller
06:08 PM EDIT bug #9476 (Closed): SpecimenTypeDesignations for existing names in other nom acts can not be created
this is a regression caused by the changes made for #9324
To reproduce
* in registration workingset editor: ...
Andreas Kohlbecker
06:07 PM EDIT bug #9475 (Resolved): NameTypeDesignations for existing names in other nom acts can not be created
Andreas Kohlbecker
05:51 PM EDIT bug #9475 (Closed): NameTypeDesignations for existing names in other nom acts can not be created
this is a regression caused by the changes made for #9324
To reproduce
* in registration workingset editor: ...
Andreas Kohlbecker
05:53 PM EDIT Revision bd6037c5 (cdm-vaadin): ref #9475 fixing problems caused by implementation for #9324 - changing NameTypeDesignationWorkingsetIds strategy again
Andreas Kohlbecker
05:38 PM EDIT bug #8858: Ordering of distribution status 'undefined' is not correct in E+M
Another solution is implementing #3816 Andreas Müller
05:20 PM EDIT bug #8858 (Resolved): Ordering of distribution status 'undefined' is not correct in E+M
Fixed by adding ordering by vocabulary uuid to term ordering. This is a preliminary solution until ordering via order... Andreas Müller
05:16 PM EDIT Revision b553ef04 (cdmlib): ref #8858 ordering of terms from different vocabularies use voc.uuid as vocabulary order attribute (fix ordering of "undefined" status in E+M)
Andreas Müller
04:57 PM EDIT feature request #5779 (Closed): Update EuroPlusMedCondensedDistributionComposer to use new symbol field
This should be fixed by fixing #8297 . E+M condensed distribution uses symbol2 now by default. Andreas Müller
04:51 PM EDIT Revision aeadc9cf (cdmlib): cleanup
Andreas Müller
04:01 PM EDIT feature request #3907 (Closed): EuroMed: implement condensed "status" string of distribution information
This is generally implemented. Open issues (and full refactoring) will be done in #8297 Andreas Müller
03:47 PM EDIT Revision a9656555 (cdmlib-apps): fix compile error
Andreas Müller
03:47 PM EDIT Revision f87413f4 (taxeditor): cleanup
Andreas Müller
03:35 PM EDIT feature request #9474 (New): Creating a new Specimen/FieldUnit in Specimen Tree Editor with taxon association
When a taxon is selected in specimen tree editor and a new fieldunit/specimen is created, the specimen should have an... Katja Luther
03:26 PM EDIT bug #8198 (Resolved): Deleting an image gallery from image gallery view shows wrong configuration dialog
Andreas Müller wrote:
> Andreas Müller wrote:
> > The exception is fixed now. However, the "delete the media data c...
Katja Luther
03:24 PM EDIT bug #8198 (Feedback): Deleting an image gallery from image gallery view shows wrong configuration dialog
Andreas Müller
03:23 PM EDIT bug #8198: Deleting an image gallery from image gallery view shows wrong configuration dialog
Andreas Müller wrote:
> The exception is fixed now. However, the "delete the media data completely, even if ..." doe...
Andreas Müller
03:14 PM EDIT bug #8198 (Resolved): Deleting an image gallery from image gallery view shows wrong configuration dialog
The configuration wizard is only shown for persisted media now and only if media exist.
The exception should not c...
Katja Luther
12:41 PM EDIT bug #8198: Deleting an image gallery from image gallery view shows wrong configuration dialog
Also the configuration sould only show up if the image gallery is not empty. This is currently not the case.
And f...
Andreas Müller
12:38 PM EDIT bug #8198 (Feedback): Deleting an image gallery from image gallery view shows wrong configuration dialog
The exception is fixed now. However, the "delete the media data completely, even if ..." does not work. The media is ... Andreas Müller
11:49 AM EDIT bug #8198 (Resolved): Deleting an image gallery from image gallery view shows wrong configuration dialog
this should be fixed. Katja Luther
03:15 PM EDIT Revision c3e57b69 (taxeditor): avoid NPE
Katja Luther
03:14 PM EDIT Revision e4ddb405 (taxeditor): ref #8198: show config dialog only for persisted media and fix delete media in gallery - continue
Katja Luther
03:07 PM EDIT Revision db83cf0b (taxeditor): ref #8198: show config dialog only for persisted media and fix delete media in gallery
Katja Luther
01:22 PM EDIT Revision 0afdad42 (taxeditor): ref #8767: add information when publish flag of the new taxon differs from the parent - continue
Katja Luther
12:57 PM EDIT bug #9467 (Resolved): AssertionFailedException when opening DefaultFeatureTreePreference and preference should not allow multi-select
Andreas Müller wrote:
> This is fixed and can be closed.
>
> By the way the default feature tree preference page ...
Katja Luther
12:56 PM EDIT Revision db56c41b (taxeditor): ref #9467: do not allow multi select
Katja Luther
12:33 PM EDIT bug #8767 (Resolved): Workflow support for publish flag
Andreas Müller wrote:
> Katja Luther wrote:
> > I also adapted the changeSynonymToAcceptedTaxon, the newly created ...
Katja Luther
12:32 PM EDIT Revision 373576f7 (taxeditor): ref #8767: add information when publish flag of the new taxon differs from the parent
Katja Luther
12:27 PM EDIT bug #9465 (Closed): Open in ... NameEditor for orphan taxa results in CCE
Looks ok now Andreas Müller
11:43 AM EDIT bug #9465 (Resolved): Open in ... NameEditor for orphan taxa results in CCE
Andreas Müller wrote:
> I can't see that any exception is thrown now ...
missed to commit DefaultOpenTaxonEditorF...
Katja Luther
10:51 AM EDIT bug #9465 (Feedback): Open in ... NameEditor for orphan taxa results in CCE
I can't see that any exception is thrown now ... Andreas Müller
10:14 AM EDIT bug #9465 (Resolved): Open in ... NameEditor for orphan taxa results in CCE
Andreas Müller wrote:
> Is fixed.
> Maybe we should think about an interface IHasUuid to avoid having generics like...
Katja Luther
12:14 PM EDIT Revision 7f7649e0 (cdm-dataportal): ref #8297 adapt dataportal code to new condensed distribution string handling
Andreas Müller
11:47 AM EDIT bug #9472 (Closed): Encoding problem with ProxyUtils.CollectionType leading to failing lazy collection loading
looks fine and works as expected (tested on turkish os) Katja Luther
11:46 AM EDIT Revision 849b38e8 (taxeditor): ref #5670: refresh of navigator for updated node
Katja Luther
11:23 AM EDIT Revision c9ad48b6 (taxeditor): code cleaning
Katja Luther
10:53 AM EDIT Revision ee472ec0 (taxeditor): ref #9465: throw exception if object is not taxon or UuidAndTitleCache
Katja Luther
10:32 AM EDIT bug #5670: Refresh of Taxon Navigator
is this fixed/for review? If not can you leave a note on open issues? Andreas Müller
10:16 AM EDIT feature request #9427 (Closed): Code cleaning in CdmPreferenceCache
looks fine Katja Luther
10:13 AM EDIT Revision 8d45fe05 (taxeditor): ref #9465: throw exception if object is not taxon or UuidAndTitleCache
Katja Luther
08:56 AM EDIT Revision 4224661e (cdmlib): ref #9340: fix NPE
Katja Luther
08:24 AM EDIT Revision ae13fa54 (cdmlib): ref #9340: adapt service methods to secundum workflow - adapt tests
Katja Luther

02/23/2021

11:16 PM EDIT Revision a6527252 (cdmlib): ref #8297 some minor adaptations and adding taggedText to CondensedDistribution bean
Andreas Müller
11:15 PM EDIT Revision 92699374 (cdmlib): cleanup
Andreas Müller
10:14 PM EDIT Revision ac1f39b4 (cdmlib): ref #8297 make isAnyIntroduced transient
Andreas Müller
06:20 PM EDIT Revision ec7eaac5 (cdmlib): ref #8297 refactor condensed distribution string handling
Andreas Müller
06:20 PM EDIT Revision 00103853 (cdmlib): cleanup
Andreas Müller
06:15 PM EDIT Revision b02474e5 (cdmlib): ref #9340: adapt service methods to secundum workflow - adapt tests
Katja Luther
06:11 PM EDIT Revision d75abe5d (cdmlib): ref #9340: adapt service methods to secundum workflow
Katja Luther
03:57 PM EDIT feature request #9340 (In Progress): Workflow support for secundum handling when making synonym a new accepted taxon
the workflow for change synonym to accepted and accepted to synonym is adapted. Katja Luther
03:54 PM EDIT Revision 44000ac1 (taxeditor): ref #9340: workflow for changing synonym to acc and acc to synonym
Katja Luther
01:50 PM EDIT Platform Etablierung report #9378 (Closed): Meeting EDIT Platform documentation 2021-02-22
**Ergebnisprotokoll** des Meetings: https://wiki.bgbm.org/bdinotes/index.php/BDI_299 Andreas Kohlbecker
11:27 AM EDIT Revision 9c170b09 (cdmlib): use full semantic for PresenceAbsenceTerm uuids
Andreas Müller

02/22/2021

08:02 PM EDIT Revision 58358572 (taxeditor): ref #8198: fix ConcurrentModificationException - continue
Katja Luther
07:51 PM EDIT Revision 5e3747b3 (taxeditor): ref #8198: fix ConcurrentModificationException
Katja Luther
07:48 PM EDIT Revision 299adb56 (taxeditor): ref #9340: secundum ref workflow for synonym to taxon
Katja Luther
05:33 PM EDIT bug #8198: Deleting an image gallery from image gallery view shows wrong configuration dialog
please call pull before fixing as I did code cleaning Andreas Müller
05:32 PM EDIT bug #8198 (Feedback): Deleting an image gallery from image gallery view shows wrong configuration dialog
If deleting even if media is linked a concurrent modification is thrown due to this code:
~~~
...
Andreas Müller
05:30 PM EDIT Revision 0c9893d5 (taxeditor): ref #8198 adapt message for deleting image
Andreas Müller
05:29 PM EDIT Revision d847c874 (taxeditor): cleanup
Andreas Müller
04:55 PM EDIT Revision 6bbbc666 (taxeditor): cleanup
Andreas Müller
04:47 PM EDIT bug #9467 (Feedback): AssertionFailedException when opening DefaultFeatureTreePreference and preference should not allow multi-select
This is fixed and can be closed.
By the way the default feature tree preference page allows multi-select (but stor...
Andreas Müller
04:29 PM EDIT bug #9465 (Feedback): Open in ... NameEditor for orphan taxa results in CCE
Is fixed.
Maybe we should think about an interface IHasUuid to avoid having generics like "extends DefaultOpenHandle...
Andreas Müller
04:22 PM EDIT bug #9374 (Closed): ClassCastException when switching between media
Difficult to test as it appears from time to time. So I think we can close this and reopen if it appears again. Andreas Müller
04:21 PM EDIT bug #9471 (Closed): Widget is disposed exception when switching away from media before details view is completely loaded
I couldn't reproduce it anymore by testing a few images I guess it is fixed. Reopen if it appears again. Andreas Müller
04:17 PM EDIT bug #9466 (Closed): Termselection preference pages do not check the elements
Seems to work. Andreas Müller
10:38 AM EDIT feature request #9473 (New): Support moving images to new taxa similar to facts
For a long time it is possible to move single facts or full description from one taxon to another taxon. This is curr... Andreas Müller

02/19/2021

05:21 PM EDIT Revision 44c1cf4c (cdmlib): cleanup TermNodeDto
Andreas Müller
05:09 PM EDIT Revision 15054273 (taxeditor): fix potential NPEs
Andreas Müller
05:06 PM EDIT Revision 067af2dc (taxeditor): cleanup
Andreas Müller
11:41 AM EDIT bug #7107: "Omit level" (TDWG Level2) in distribution hierarchy should not supress distributions source reference
Andreas Kohlbecker wrote:
> Hallo Andreas, ich denke das ist auch für Euro+Med releveant, oder?
>
> Wenn ja, soll...
Andreas Müller
11:11 AM EDIT bug #9472: Encoding problem with ProxyUtils.CollectionType leading to failing lazy collection loading
Please review. Andreas Müller
11:08 AM EDIT bug #9472 (Resolved): Encoding problem with ProxyUtils.CollectionType leading to failing lazy collection loading
Applied in changeset commit:cdmlib|707e14fada836b1ff3fe6e83d0de6508baeb2bc6. Andreas Müller
11:07 AM EDIT bug #9472 (Closed): Encoding problem with ProxyUtils.CollectionType leading to failing lazy collection loading
The method
~~~
return this.name().toLowerCase();
~~~
seems to be encoding dependend, leading e.g. in Turkisc...
Andreas Müller
11:08 AM EDIT Revision 707e14fa (cdmlib): fix #9472 fix encoding issue in ProxyUtils.CollectionType.toString()
Andreas Müller
11:08 AM EDIT Revision f7f95e38 (cdmlib): cleanup
Andreas Müller

02/18/2021

03:06 PM EDIT Revision 7c11179c (taxeditor): add class information to exception -fix compilation error
Katja Luther
03:03 PM EDIT Revision e6989719 (taxeditor): add class information to exception
Katja Luther
12:52 PM EDIT bug #9466 (Resolved): Termselection preference pages do not check the elements
This should be fixed, please review. Katja Luther
10:58 AM EDIT Revision 69d28708 (cdmlib): ref #8198: add possibility to delete a list of media
Katja Luther
10:45 AM EDIT Revision ab7d0888 (taxeditor): ref #8198: l10n file adaptions
Katja Luther
10:31 AM EDIT bug #8198 (Resolved): Deleting an image gallery from image gallery view shows wrong configuration dialog
For the gallery the dialog explicitly say that the gallery still contains media data and ask how to handle them. Plea... Katja Luther
10:29 AM EDIT Revision 4da7c81b (taxeditor): ref #8198: show media delete config wizard only for galleries with media
Katja Luther

02/17/2021

02:08 PM EDIT Revision 0c247ba9 (taxeditor): add additional debugging in AbstractPersistentCollection
Katja Luther
12:42 PM EDIT Revision 628f1778 (taxeditor): cleanup
Andreas Müller
12:40 PM EDIT Revision 96576957 (taxeditor): remove svnignore from etc/jetty
Andreas Müller
12:36 PM EDIT Revision c2e26de3 (taxeditor): ref #9359 update spring version in remotingApplicationContext and testRemotingApplicationContext.xml
Andreas Müller
12:31 PM EDIT bug #8198: Deleting an image gallery from image gallery view shows wrong configuration dialog
If this is in progress should we move it to current milestone? Andreas Müller
12:31 PM EDIT bug #8198: Deleting an image gallery from image gallery view shows wrong configuration dialog
For existing images we need the delete dialog that is true. I have not checked how the current dialog looks like but ... Andreas Müller
12:25 PM EDIT bug #8198 (In Progress): Deleting an image gallery from image gallery view shows wrong configuration dialog
Katja Luther
10:03 AM EDIT bug #8297: Fix condensed distribution string for E+M
Diskussion mit AK über handling des CondensedDistributionString im Portal:
Derzeit werden Teile des Strings hardco...
Andreas Müller
09:09 AM EDIT bug #8297 (In Progress): Fix condensed distribution string for E+M
AM:
Wenn die Subareale beide z.B. indigenous sind, aber unterschiedliche Status haben, sollen die Hauptareale dann...
Andreas Müller
09:08 AM EDIT bug #8297: Fix condensed distribution string for E+M
AM:
Wenn es für ein Areal Unterareale gibt und diese haben einmal einen indigenous und einmal einen „foreign“ Sta...
Andreas Müller

02/16/2021

05:04 PM EDIT bug #9471 (Resolved): Widget is disposed exception when switching away from media before details view is completely loaded
yes, this should be resolved. Please review. Katja Luther
04:48 PM EDIT bug #9471: Widget is disposed exception when switching away from media before details view is completely loaded
is this resolved? (you mention it in #9374) Andreas Müller
01:57 PM EDIT bug #9471 (Closed): Widget is disposed exception when switching away from media before details view is completely loaded
When the media details view is not completely loaded and clicking on another element a "widget is disposed exception"... Katja Luther
04:49 PM EDIT Revision 32ca3eb7 (taxeditor): ref #9466: avoid NPE
Katja Luther
02:28 PM EDIT bug #9374: ClassCastException when switching between media
After fixing #9471 the problem seems to be fixed. Please have a look whether you still can reproduce the exception. Katja Luther
02:24 PM EDIT Revision 4e80230e (taxeditor): ref #6229: multilanguage support for media details view
Katja Luther
02:02 PM EDIT Revision 2ab78f11 (taxeditor): ref #9471: avoid widget is disposed for media details view
Katja Luther
10:17 AM EDIT task #9359 (In Progress): Update cdmlib, taxeditor, cdmserver etc. dependencies
Andreas Müller
08:02 AM EDIT bug #9468: specimen type of existing name cannot be saved
this seems to be a problem which stems from incomplete solution of #9290 Andreas Kohlbecker
08:01 AM EDIT bug #9468 (In Progress): specimen type of existing name cannot be saved
This sees to happen with newly created registrations only.
~~~~
07:50:46.162 [phycobank] [qtp599984672-30] ERROR ...
Andreas Kohlbecker
07:38 AM EDIT bug #9470 (Resolved): CollectionDTO constructor prevent from circles
Applied in changeset commit:cdmlib|85d748e1311f1b1045ea33d07ebf5f0beb55e359. Andreas Kohlbecker
07:30 AM EDIT bug #9470 (Closed): CollectionDTO constructor prevent from circles
The constructor of CollectionDTO is being called recursively, to initialize also super collections.
Prevent from end...
Andreas Kohlbecker
07:38 AM EDIT Revision 85d748e1 (cdmlib): fix #9470 preventing circular calls of CollectionDTO constructor
Andreas Kohlbecker

02/15/2021

09:05 PM EDIT bug #7529: Wrong UUID after creating a GrantedAuthority for a Role like ROLE_PUBLISH
Andreas Müller wrote:
> Have you also checked that no ROLE_PUBLISH with wrong UUID exists in existing production DBs...
Andreas Kohlbecker
04:15 PM EDIT bug #7529: Wrong UUID after creating a GrantedAuthority for a Role like ROLE_PUBLISH
Have you also checked that no ROLE_PUBLISH with wrong UUID exists in existing production DBs? (see ticket description) Andreas Müller
05:12 PM EDIT Revision 0495b764 (taxeditor): ref #9359 remove taxeditor.local...config.properties
Andreas Müller
05:12 PM EDIT Revision 790c4cdf (taxeditor): ref #9359 remove taxeditor.cdmlib...localApplicationContext.xml / taxeditor.local...editorApplicationContext.xml and taxeditor.store...editorApplicationContext.xml
Andreas Müller
04:16 PM EDIT Revision a56689b9 (cdmlib-apps): cleanup
Andreas Müller
04:16 PM EDIT Revision e0f4dbe9 (cdmlib-apps): ref #7529 adapt new ROLE_PUBLISH constant name in cdmlib-app
Andreas Müller
03:52 PM EDIT bug #9469 (Closed): Searching for a UUID in bulkeditor which does not belong to a record throws an exception
When searching for such a UUID a record is shown in the table but when clicking on the record the following exception... Andreas Müller
03:36 PM EDIT bug #9468 (Worksforme): specimen type of existing name cannot be saved
Test version:
existing name selected (ok)
specimen type entered including all mandatory fields (ok)
saving the rec...
Wolf-Henning Kusber
03:34 PM EDIT feature request #9296: Preference to show/not show infrageneric epithet for species
WGB:
ist schon merkwürdig – ich bin mir eigentlich sicher, dass es das früher (bei botanischen Namen) nicht gab. E...
Andreas Müller
02:22 PM EDIT Revision 4725da43 (cdm-vaadin): jenkins bumping cdmlib.version to 5.21.0-SNAPSHOT
jenkins
02:22 PM EDIT Revision 10df87e2 (cdm-vaadin): jenkins bumping cdmlib.version to 5.22.0-SNAPSHOT
jenkins
01:24 PM EDIT Revision ea7ae629 (taxeditor): cleanup editor code: remove DeleteHandlerE4 and keep RemotingDeletehandlerE4
Katja Luther
09:05 AM EDIT Revision 0ac54bf4 (taxeditor): minor
Katja Luther

02/12/2021

03:52 PM EDIT Revision 476ffd3e (taxeditor): ref #5670: when updating a taxon update only the corresponding node in navigator
Katja Luther
03:51 PM EDIT bug #5670: Refresh of Taxon Navigator
Refresh only the handled taxonnode for changes in taxa or names. Katja Luther
11:46 AM EDIT bug #8970 (Worksforme): Moving a taxon to another position often closes the parent nodes
This seems to be fixed in the meanwhile, I can not reproduce it anymore. Katja Luther
11:38 AM EDIT bug #9467 (Resolved): AssertionFailedException when opening DefaultFeatureTreePreference and preference should not allow multi-select
This should be fixed, please review. Katja Luther
09:19 AM EDIT bug #9467 (Closed): AssertionFailedException when opening DefaultFeatureTreePreference and preference should not allow multi-select
The label provider for DefaultFeatureTreePreferences implements IBaseLabelProvider but should ILabelProvider.
~~~ ...
Katja Luther
11:29 AM EDIT Revision 731536ea (taxeditor): fix #9465: correct handling for open in taxa from search view
Katja Luther
11:28 AM EDIT bug #9465: Open in ... NameEditor for orphan taxa results in CCE
This should be fixed. Please review. Katja Luther
11:27 AM EDIT bug #9465 (Resolved): Open in ... NameEditor for orphan taxa results in CCE
Applied in changeset commit:taxeditor|731536ea445abf9f0ef923b21913ef545c6305d4. Katja Luther
09:51 AM EDIT Revision 1acdebbf (cdmlib): new preference predicate for default sec handling
Katja Luther
09:40 AM EDIT Revision 15647253 (cdmlib): add test for uuidAndTitleCache in TaxonNodedao and code cleau
Katja Luther
09:32 AM EDIT Revision ac14d421 (cdm-dataportal): ref #9463 attempt to isolate jquery versions - not yet successful
Andreas Kohlbecker
09:31 AM EDIT Revision 793d6004 (cdm-dataportal): updating poms for 5.21.0-SNAPSHOT development
jenkins
09:29 AM EDIT Revision d3ba2bcd (cdm-dataportal): ref #9463 improving documentation
Andreas Kohlbecker
09:29 AM EDIT Revision cc5d96f8 (cdm-dataportal): ref #9463 upgrading universalviewer to v3.1.1
Andreas Kohlbecker
09:29 AM EDIT bug #9463: UniversalViewer causes jQuery version conflict and breaks maps
work in progress in branch #9463-universalviewer-jquery-conflict Andreas Kohlbecker
09:28 AM EDIT Revision 4a2263a6 (taxeditor): ref #9467: TermTreeLabelProvider should implement ILabelProvider
Katja Luther
09:13 AM EDIT Revision 5f7c9e3b (taxeditor): ref #9466: fix checking selected elements in term preference page
Katja Luther
09:09 AM EDIT Revision b4b868f8 (cdm-dataportal): ref #9463 attempt to isolate jquery versions - not yet successful
Andreas Kohlbecker
09:06 AM EDIT Revision 1f23ce61 (cdm-dataportal): ref #9463 improving documentation
Andreas Kohlbecker
09:04 AM EDIT Revision b0b51399 (cdm-dataportal): ref #9463 upgrading universalviewer to v3.1.1
Andreas Kohlbecker
09:02 AM EDIT bug #9466 (Closed): Termselection preference pages do not check the elements
The preference pages for term selection do not show the selected terms when opening. Saving of a new selection works ... Katja Luther
 

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