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Andreas Müller's activity

From 12/23/2019 to 01/21/2020

01/21/2020

04:56 PM EDIT Revision 09e88a38 (cdmlib): ref #1447 reimplement getParentTaxonNodeDtoForRank() to fetch taxa of specific higher ranks
Andreas Müller
04:53 PM EDIT Revision 2d726275 (cdmlib): ref #1447 add ancestor id splitter to TreeIndex
Andreas Müller
02:14 PM EDIT Revision 820ca4ec (cdmlib): cleanup
Andreas Müller
12:11 PM EDIT Revision 5af794eb (cdmlib): cleanup and add CdmRegEx
Andreas Müller

01/20/2020

04:44 PM EDIT Revision f7d60a17 (cdmlib): cleanup
Andreas Müller
04:44 PM EDIT Revision 2a055418 (cdmlib): add parameterized HQL API access
Andreas Müller
04:04 PM EDIT bug #8821 (New): ConcurrentModificationException during deduplication in bulk editor
Hallo,
etwas Neues – Referenzen Deduplizierung, nach delete Nachfrage Save für vorheriges Delete.
HG
W
~~~
log...
Andreas Müller
03:53 PM EDIT bug #8627: NullPointerException (NPE) on saving Specimen Editor (list)
AK, why is this a **copy** of #8626?
Did you mean "related to"?
Andreas Müller
03:50 PM EDIT bug #7699 (New): NPE in CdmTransientEntityCacher.getCacheElement()
This exception appears quite often therefore I put it to the current milestone.
We need to find to handle it so t...
Andreas Müller
03:06 PM EDIT feature request #8721 (Closed): Use webservice to get all biocase provider listed by gbif
Generally this works. Open issues moved to #8820 Andreas Müller
03:04 PM EDIT task #8820 (New): Improve BioCase provider selection list
Copied from #8721
* The access points should be searchable also by the accesspoint title, For the BGBM Herbarium t...
Andreas Müller
02:59 PM EDIT Wiki edit: Release_Notes (#544)
Andreas Müller
02:38 PM EDIT Wiki edit: Release_Notes (#543)
Andreas Müller
02:33 PM EDIT Wiki edit: Release_Notes (#542)
Andreas Müller
02:52 PM EDIT feature request #8489 (Resolved): Further issues for DB preferences
putting back to 5.10 for review, no changes since then. Follow up ticket for open issues: #8818.
During review put n...
Andreas Müller
02:48 PM EDIT task #8818 (New): Remaining issues for DB preferences
Copied from #8489
* check wether all (wanted) preferences are available as db preferences
* menu.disableMul...
Andreas Müller
12:55 PM EDIT feature request #8677 (Closed): Add distribution aggregation to set subtree menu
>source type selection per source mode
maybe there is a misunderstanding, I meant source **type** . There is still...
Andreas Müller
12:50 PM EDIT feature request #8677: Add distribution aggregation to set subtree menu
>use message() for enumeration labels
This seems not yet to be used by "Aggregation mode". I move this to follow u...
Andreas Müller
12:45 PM EDIT feature request #8805 (Closed): In distribution editor synoms should be available as concatenated String
Works and ticket can be closed. Maybe in future we can also include ppSyns and MAN and maybe there is even the possib... Andreas Müller
10:48 AM EDIT feature request #8805 (Resolved): In distribution editor synoms should be available as concatenated String
Andreas Müller
12:21 PM EDIT Revision e756cd24 (cdmlib): ref #8815 adapt return type for uuidAndTitleCache method in taxonNodeService
Andreas Müller
12:12 PM EDIT bug #8736 (Feedback): LazyInitializationException (LIE) during adding Specimens to Matrix Editor
I guess this can be closed in 5.12 as there is a follow up ticket in 5.13? Andreas Müller
11:45 AM EDIT Revision 5bb4d1e3 (cdmlib): preliminary ignore DistributionAggregationTest
Andreas Müller
11:20 AM EDIT Revision f24b885c (cdmlib): cleanup
Andreas Müller
11:19 AM EDIT Revision 7de0210e (cdmlib): preliminary ignore StructuredDescriptionAggregationTest
Andreas Müller
11:19 AM EDIT Revision df326698 (cdmlib): cleanup
Andreas Müller
11:15 AM EDIT Revision b4188660 (taxeditor): ref #8805 fix potential NPE
Andreas Müller
11:05 AM EDIT bug #6585 (Feedback): Combo menu items have orange font
Andreas Müller
11:01 AM EDIT Revision f59c3f4b (cdmlib): ref #8805 cleanup TaxonDistributionDTO and simplify concatenateSynonyms method
Andreas Müller
10:37 AM EDIT bug #8645 (Closed): rename menu item General > Import > "OWL Import" to "Term Tree OWL Import"
fixed Andreas Müller

01/18/2020

04:22 PM EDIT Revision 4e41b80c (cdmlib-apps): ref #2826 handle verbatim years better
Andreas Müller
04:21 PM EDIT Revision a9047fed (cdmlib-apps): ref #2826 handle ined. authors
Andreas Müller
04:20 PM EDIT Revision 8fb964f0 (cdmlib-apps): ref #2826 cleanup
Andreas Müller
12:19 PM EDIT Revision deed567d (cdmlib-apps): ref #2826 remove not needed cdmTargetClass
Andreas Müller
11:45 AM EDIT Revision bb5bac58 (cdmlib-apps): minor, cleanup
Andreas Müller

01/17/2020

08:25 PM EDIT Revision 046b8cfb (cdmlib): cleanup
Andreas Müller
09:08 AM EDIT bug #8814: Clean implementation for permissions with combination of Taxonnode and other permissions
Please always add "related issues" to follow up tickets not only in ticket description. This way it is linked bedirec... Andreas Müller

01/16/2020

05:11 PM EDIT bug #8810 (Feedback): In taxeditor parts without permissions should be disabled
Andreas Müller
01:53 PM EDIT bug #8810 (Resolved): In taxeditor parts without permissions should be disabled
Andreas Müller
05:09 PM EDIT feature request #8805 (Feedback): In distribution editor synoms should be available as concatenated String
For me no synonyms are shown in the column. I tested on rem_conf_am with classification "Testklass". At least taxon N... Andreas Müller
04:51 PM EDIT Wiki edit: Release_Notes (#541)
Andreas Müller
01:07 PM EDIT Wiki edit: Release_Notes (#540)
Andreas Müller
12:52 PM EDIT Wiki edit: Release_Notes (#539)
Andreas Müller
11:49 AM EDIT Wiki edit: Release_Notes (#538)
Andreas Müller
11:38 AM EDIT Wiki edit: Release_Notes (#537)
Andreas Müller
10:35 AM EDIT Wiki edit: Release_Notes (#536)
Andreas Müller
10:34 AM EDIT Wiki edit: Release_Notes (#535)
Andreas Müller
10:20 AM EDIT Wiki edit: Release_Notes (#534)
Andreas Müller
10:19 AM EDIT Wiki edit: Release_Notes (#533)
Andreas Müller
02:01 PM EDIT feature request #8749: Add proposalProvider to AbstractComboElement
should we split the ticket and move open issue to 5.13. At least partly it works as far as I remember from vocabulary... Andreas Müller
01:42 PM EDIT bug #8745 (Resolved): Type designations of synonyms missing on specimen page
Andreas Müller
01:38 PM EDIT feature request #8299: add typification column to scientific name and homotypical group in cdm light
I don't think we should move this. It was probably fixed in 5.12 Andreas Müller
01:10 PM EDIT bug #8790 (In Progress): Update measurement units for existing quantitative data missing a unit
Andreas Müller
01:08 PM EDIT task #8672: Source handling during (distribution) aggregation
This might be partly implemented in 5.12 already. If fully fixed revert milestone to 5.12 Andreas Müller
01:05 PM EDIT feature request #8677 (Resolved): Add distribution aggregation to set subtree menu
Moved open issues to #8811
Review needed for **this** ticket.
Andreas Müller
01:04 PM EDIT task #8811 (New): Open issues for "Add distribution aggregation to set subtree menu"
copied from #8677
* disable rank fields in case aggregation should run only on the 1 selected taxon (and not on s...
Andreas Müller
12:55 PM EDIT bug #8788 (Feedback): Cloned descriptions do not show up in dataportal anymore
Is this still an open issue? I somehow remember that you have worked on it at the beginning of the year. Andreas Müller
12:23 PM EDIT feature request #6812: Improve TaxEditor download site
Issues open here? Andreas Müller
11:29 AM EDIT task #8130: Check if related feature data is cleared when supported facts type is changed
I guess this is not yet fixed. Andreas Müller
11:24 AM EDIT bug #8808 (Closed): Cdm-Light Export fix name identifier export
I won't review as it takes too much time. I guess feedback from WGB should be enough. Andreas Müller
10:14 AM EDIT bug #8797 (Closed): Navigator tree collapse after moving taxon node
This works as expected now. Andreas Müller
09:59 AM EDIT bug #8806: Multiple representations problem on saving Desriptive Data Set
If this is reproducable it should be fixed soon. Andreas Müller

01/15/2020

03:09 PM EDIT bug #8511 (Closed): The structure path in the character details view should have a line break
This works as expected Andreas Müller
01:57 PM EDIT feature request #8656 (Closed): [DISCUSS] Should only characters be allowed for DescriptiveDataSets/Character Matrix?
This is fixed with the new implementation. Andreas Müller
01:48 PM EDIT bug #8797 (Feedback): Navigator tree collapse after moving taxon node
For me the problem still exists. No matter if I use d&d or menu or if I move within a classification or to another cl... Andreas Müller
01:44 PM EDIT bug #8801 (Closed): Deselected menu items are not reactivated in navigator
Works as expected now Andreas Müller
01:40 PM EDIT bug #8804: taxeditor hangs when creating a new classification
Can you please test on test/nightly also. This is our reference system for ticket reviews etc. Ofcourse we also need ... Andreas Müller
01:17 PM EDIT bug #8804: taxeditor hangs when creating a new classification
I can't reproduce this. Can you give more information. I created classifications in multiple DBs and it worked.
Whic...
Andreas Müller
01:21 PM EDIT bug #8737: delete taxon included in two classifications deletes taxonname
Please test on test/caryo_spp. #8804 is not valid for at least this DB (at least on my pc). Andreas Müller
11:13 AM EDIT feature request #8803 (Resolved): Add "per mm²" to measurement units
Applied in changeset commit:cdmlib|a65a935cd5279773ac1d32f98e4be04ecd5ea065. Andreas Müller
11:08 AM EDIT feature request #8803 (Closed): Add "per mm²" to measurement units
This is needed for some Cactaceae characters Andreas Müller
11:12 AM EDIT Revision 6ad1062d (cdmlib): cleanup
Andreas Müller
11:12 AM EDIT Revision a65a935c (cdmlib): fix #8803 add per mm² to MeasurementUnit
Andreas Müller
11:12 AM EDIT Revision 5675e611 (cdmlib): fix getPage() for deduplication
Andreas Müller
11:12 AM EDIT Revision 30df4b0a (cdmlib): cleanup
Andreas Müller

01/14/2020

04:27 PM EDIT Revision 207beb84 (cdmlib-apps): cleanup
Andreas Müller
04:23 PM EDIT Revision bddc23ae (cdmlib-apps): minor changes to PESI Activators
Andreas Müller
04:15 PM EDIT Revision 567f10b2 (cdmlib-apps): latest changes to GreeceImageActivator
Andreas Müller
04:13 PM EDIT Revision 3f131c46 (cdmlib-apps): ref #1447 handle null and ERMS pseudo taxa and some minor changes
Andreas Müller
11:31 AM EDIT feature request #8802 (In Progress): Implement flowering period for Flora of Cyprus
Andreas Müller
11:31 AM EDIT feature request #8802 (Closed): Implement flowering period for Flora of Cyprus
(was "Blütezeiten")
This includes a new DescriptionElement subclass "TermporalData" and a new TimePeriod subclass ...
Andreas Müller

01/13/2020

04:35 PM EDIT Revision 6b99e174 (cdmlib-apps): ref #1447 underscore for parent diff file
Andreas Müller
03:11 PM EDIT Revision fd411b34 (cdmlib-apps): ref #1447 remove unncessary casts and cleanup
Andreas Müller
02:48 PM EDIT Revision a163fed9 (cdmlib-apps): ref #1447 add utf8 to writer
Andreas Müller

01/12/2020

01:05 AM EDIT Revision ab6f97de (cdmlib-apps): cleanup
Andreas Müller
01:02 AM EDIT Revision 874a38f5 (cdmlib-apps): ref #8643 fix FaEu destination 2
Andreas Müller

01/10/2020

02:20 PM EDIT Revision 2e91751e (cdmlib): ref #1447 add StringComparator
Andreas Müller
01:01 PM EDIT Revision b5b0fcf5 (cdmlib-apps): ref #1447 improve PesiFindIdenticalNamesActivator
Andreas Müller
12:38 PM EDIT Revision c938072f (cdmlib): ref #1447 fix findIdenticalName function
Andreas Müller
12:07 PM EDIT Revision fa9ef8c4 (cdmlib): minor
Andreas Müller

01/09/2020

12:53 PM EDIT Revision 86fd29ff (cdmlib): ref #1447 change duplicate finding of names from sec to source reference and allow >2 sources
Andreas Müller
12:30 PM EDIT feature request #8771: display of average value with precision so that it differs from min and max by one digit
Die Zeile verstehe ich nicht:
$precision += $precision < 0 ? - 1 : 1;
Warum muss die Richtung der Präzision...
Andreas Müller
12:04 PM EDIT feature request #8771: display of average value with precision so that it differs from min and max by one digit
Example on test/cactaceae:
http://test.e-taxonomy.eu/dataportal/preview/caryophyllales_spp/cdm_dataportal/descript...
Andreas Müller
11:47 AM EDIT feature request #8771: display of average value with precision so that it differs from min and max by one digit
Is there an example page available? Andreas Müller
11:46 AM EDIT feature request #8771 (Feedback): display of average value with precision so that it differs from min and max by one digit
3 Verbesserungsvorschläge:
* Avg, StdAbw und Var nur ausblenden bei min=max, wenn Avg=min(=max) bzw. StdAbw und Va...
Andreas Müller

01/08/2020

01:29 PM EDIT bug #8800 (Resolved): If supplemental data view shows reference it is not possible to select another reference
Applied in changeset commit:cdmlib|db7b0ee79b966b68a1d2958214303d4b101f1022. Andreas Müller
12:32 PM EDIT bug #8800: If supplemental data view shows reference it is not possible to select another reference
I checked Walters log-file (see below). So he also got an error in ReferenceDaoHibernateImpl.getUuidAndTitle but in a... Andreas Müller
12:14 PM EDIT bug #8800: If supplemental data view shows reference it is not possible to select another reference
AM:
Das klingt ein bisschen wie der Fehler den ich gestern mit dem nicht möglichen Aufrufen des Referenzdialoges f...
Andreas Müller
01:28 PM EDIT Revision db7b0ee7 (cdmlib): fix #8800 fix NPE in Reference.getUuidAndTitle
Andreas Müller
12:19 PM EDIT bug #8801: Deselected menu items are not reactivated in navigator
Being resolved this can go into 5.12, correct? Andreas Müller

01/07/2020

06:19 PM EDIT Revision 4f67e0f9 (cdmlib): temporarily ignore SortIndexUpdaterWrapperTest
Andreas Müller
06:19 PM EDIT Revision 8b3c844e (cdmlib): cleanup and javadoc
Andreas Müller
04:50 PM EDIT feature request #8787: Improve layout for ExactValue on Description Pages
Andreas Kohlbecker wrote:
> Implemented.
>
> I did not change the separator to semicolon since we are using the ...
Andreas Müller
04:16 PM EDIT task #8799 (New): [PESI][E+M] [Discuss] Use reference author instead of (sec)-reference for (Species)ExpertName
Other databases in PESI use only the expert name (e.g. http://www.eu-nomen.eu/portal/taxon.php?GUID=urn:lsid:marinesp... Andreas Müller

01/06/2020

05:01 PM EDIT Revision 34743ac7 (cdmlib-apps): ref #8508, ref #8577 treeindex test for E+M validation and common base class for E+M and Erms validation
Andreas Müller
04:57 PM EDIT Revision bc416076 (cdmlib-apps): ref #1447 cleanup FaunaEuErmsFindIdenticalNamesActivator
Andreas Müller

12/28/2019

04:10 PM EDIT Revision 2eee7850 (cdmlib-apps): ref #1444 minor fixes for ErmsImportActivator
Andreas Müller
04:09 PM EDIT Revision 85c9a0d8 (cdmlib-apps): ref #2717 fix sourceFk handling for pure names
Andreas Müller
04:08 PM EDIT Revision 19743136 (cdmlib-apps): ref #8508 fix and finalize taxon status (cache) validation
Andreas Müller
11:51 AM EDIT Wiki edit: Erms_mapping (#13)
Andreas Müller
11:45 AM EDIT Revision 3d6c7bfc (cdmlib-apps): ref #1444, ref #8508, ref #8509 fix ERMS taxon status handling
Andreas Müller
10:48 AM EDIT Revision f859201a (cdmlib-apps): ref #8508 further improvements to ERMS validation
Andreas Müller

12/27/2019

11:16 PM EDIT Revision 0e601fdc (cdmlib-apps): ref #8509 fix sourceFk handling in PESI taxon export
Andreas Müller
11:14 PM EDIT Revision 744bd412 (cdmlib-apps): ref #8509 improve tagged names handling in PESI export (ERMS and others)
Andreas Müller
11:11 PM EDIT Revision c0411992 (cdmlib-apps): ref #1444, ref #7976 fix erronous subgenus formatting in ERMS
Andreas Müller
11:09 PM EDIT Revision c12d2903 (cdmlib-apps): ref #1444, ref #7976 better logging for unhandled unacceptReason
Andreas Müller
10:49 PM EDIT Revision 15d48661 (cdmlib-apps): cleanup
Andreas Müller
04:48 PM EDIT task #8796 (New): [PESI][DW] Handling of Taxon.SourceFk
In SQL Script the Taxon.SourceFk was filled the following way:
* for taxa from ERMS, FauEU and IF it was filled by...
Andreas Müller
12:41 PM EDIT Wiki edit: Erms_mapping (#12)
Andreas Müller
11:09 AM EDIT bug #8508 (In Progress): [PESI][ERMS] ERMS import pipeline validation
Andreas Müller
09:48 AM EDIT Revision 2abd2851 (cdmlib-apps): ref #8508 improve treeindex validation and remove source type 'i' handling
Andreas Müller
09:39 AM EDIT Revision 8f402cc0 (cdmlib-apps): ref #1444, ref #2871, ref #7976 improve authorship handling for MAN
Andreas Müller
09:37 AM EDIT Revision 751d08a3 (cdmlib-apps): ref #1444 remove 2 taxon status checks from ErmsTaxonImportValidator as they are not correct anymore
- status is now handled via id and tu_accfinal, not via taxonStatus field Andreas Müller
09:31 AM EDIT task #8795 (New): [PESI][DW] CHECK all fields on correct handling of merged data in PESI export
Sometimes merged data needs to be pipe separated or something else. All fields need to be checked if they handle this... Andreas Müller

12/26/2019

11:33 PM EDIT task #8794 (New): [PESI][Merge]+[DW] Check all SQL scripts related to merging
Check all SQL script which are not single DB specific on Y:\BDI\PESI\sh\DBs2PESI\vCDM Andreas Müller
09:12 PM EDIT Revision a12e9e83 (cdmlib-apps): ref #2104 remove fixme from unused PesiNoteSourceExport_Old
Andreas Müller
08:07 PM EDIT bug #8793 (New): [E+M] In-Ref authors should have full (non-abbreviated) author title without initials
This is a E+M requirement for nom. ref. formatting Andreas Müller
07:29 PM EDIT Revision dd68b822 (cdmlib-apps): ref #8508 latest changes
Andreas Müller
07:28 PM EDIT Revision e706b35f (cdmlib-apps): cleanup
Andreas Müller
07:21 PM EDIT Revision 58968197 (cdmlib-apps): ref #1444, ref #7976 improve misapplication handling in ERMS import
Andreas Müller
06:41 PM EDIT task #7976 (Closed): [PESI][ERMS] Erms taxon import
Andreas Müller
05:02 PM EDIT task #8792: Issues to have in mind for ERMS import
Open issues from comparing SQL scripts (Y:\BDI\PESI\sh\DBs2PESI\vCDM\):
!!!! Do check again because maybe I checke...
Andreas Müller
12:06 PM EDIT task #8792 (New): Issues to have in mind for ERMS import
The functioning of the ERMS import (and PESI export) is explained at: [[Erms_mapping]]
## General information
O...
Andreas Müller
03:38 PM EDIT Wiki edit: Erms_mapping (#11)
Andreas Müller
03:38 PM EDIT Wiki edit: Erms_mapping (#10)
Andreas Müller
03:37 PM EDIT Wiki edit: Erms_mapping (#9)
Andreas Müller
03:37 PM EDIT Wiki edit: Erms_mapping (#8)
Andreas Müller
02:40 PM EDIT Wiki edit: Erms_mapping (#7)
Andreas Müller
02:02 PM EDIT Wiki edit: Erms_mapping (#6)
Andreas Müller
01:28 PM EDIT Wiki edit: Erms_mapping (#5)
Andreas Müller
12:56 PM EDIT Wiki edit: Erms_mapping (#4)
Andreas Müller
12:41 PM EDIT Wiki edit: Erms_mapping (#3)
Andreas Müller
12:40 PM EDIT Wiki edit: Erms_mapping (#2)
Andreas Müller
12:17 PM EDIT Wiki edit: Erms_mapping (#1)
Andreas Müller
01:59 PM EDIT Revision d4c6ec84 (cdmlib-apps): ref #8508 minor and cleanup
Andreas Müller
01:56 PM EDIT Revision 0d26082d (cdmlib-apps): ref #8509 handle new ERMS quality status "Thematic Editor"
Andreas Müller
01:55 PM EDIT Revision bd4c4dee (cdmlib-apps): ref #1444, #8509 fix pipeline handling in ErmsImportActivator
Andreas Müller
01:54 PM EDIT Revision 2a2eb365 (cdmlib-apps): ref #1444 replace tu_acctaxon by tu_accfinal
Andreas Müller

12/24/2019

01:52 AM EDIT Revision 8419d12a (cdmlib-apps): ref #8508 latest changes to ERMS validation
Andreas Müller
01:51 AM EDIT Revision 98d96cf6 (cdmlib-apps): cleanup
Andreas Müller
01:45 AM EDIT Revision c44a40e4 (cdmlib-apps): ref #8509 fix taxonStatus export for ERMS
Andreas Müller

12/23/2019

09:37 PM EDIT Revision 0cd4c1a9 (cdmlib-apps): cleanup
Andreas Müller
09:36 PM EDIT Revision 7373dcf3 (cdmlib-apps): ref #2717 remove publish marker and uuidMisappliedCommonName marker handling because not needed anymore
Andreas Müller
09:32 PM EDIT Revision ec9963cf (cdmlib-apps): ref #2717 add 2nd source to EuroMedSourceActivator
Andreas Müller
08:56 PM EDIT Revision ea77fefa (cdmlib-apps): ref #1444 handle missing sourceUse
Andreas Müller
08:31 PM EDIT Revision 4c575756 (cdmlib-apps): ref #1444 minor changes and cleanup
Andreas Müller
08:30 PM EDIT Revision bd1bdb28 (cdmlib-apps): ref #1444 some changes due to upgrade to ERMS v2019
Andreas Müller
08:28 PM EDIT Revision e4598bb4 (cdmlib-apps): ref #1444 add new ERMS source and rename old one
Andreas Müller
12:09 PM EDIT feature request #8441 (Closed): Add FeatureState class
I think we can close this ticket. Andreas Müller
10:00 AM EDIT Revision 5d17ab2a (cdmlib-apps): cleanup and move isIgnoreNull from base configurator to BMconfig only
Andreas Müller
09:58 AM EDIT Revision cb5cbca9 (cdmlib): remove ignoreNull from ImportConfiguratorBase
Andreas Müller
 

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