Activity
From 07/25/2019 to 08/23/2019
08/23/2019
- 11:56 PM EDIT Revision e899bbdf (taxeditor): adapt rollback to new name
- 11:55 PM EDIT Revision 80b81212 (cdmlib): remove setRollbackOnly to test if this causes exception in TaxEditor tests. Also it looks like it should be used only in specific contexts
- 11:54 PM EDIT Revision 29421c03 (cdmlib): rename rollback method
- 11:53 PM EDIT Revision 063973ca (cdmlib): cleanup
- 11:44 PM EDIT Revision 8da3d0db (taxeditor): fix compile error due to new rollback method
- 11:10 PM EDIT Revision def8dda3 (cdmlib-apps): cleanup TaxonExcelCaryophyllalesActivator
- 11:10 PM EDIT Revision 5815f954 (cdmlib-apps): ref #8479 FauEu Cdm2Cdm import more or less running but still slow
- 11:09 PM EDIT Revision 9718c259 (cdmlib-apps): minor
- 11:07 PM EDIT Revision 52b594a2 (cdmlib): add rollback to ICdmRepository and use in TaxonNodeOutStreamPartitioner
- 11:06 PM EDIT Revision d0390c50 (cdmlib): cleanup
- 06:20 PM EDIT Revision 48a40f35 (taxeditor): ref #8475 Use feature selection dialog in feature state wizard
- 04:39 PM EDIT Revision 26d39860 (cdmlib): cleanup
- 04:12 PM EDIT feature request #8475 (Feedback): Adapt applicable state detail view elements to FeatureState
- Patrick Plitzner wrote:
> Andreas Müller wrote:
> > In this case we do not need an "empty" choice for the dropdowns... - 02:59 PM EDIT feature request #8475 (Closed): Adapt applicable state detail view elements to FeatureState
- Andreas Müller wrote:
> In this case we do not need an "empty" choice for the dropdowns. A FeatureState always needs... - 10:07 AM EDIT feature request #8475: Adapt applicable state detail view elements to FeatureState
- In general this ticket can be closed as it works as expected.
- 10:06 AM EDIT feature request #8475: Adapt applicable state detail view elements to FeatureState
- I wonder if we could reduce the availability of "InapplicableIf" and "OnlyApplicableIF" to term nodes of term type "...
- 10:02 AM EDIT feature request #8475 (Feedback): Adapt applicable state detail view elements to FeatureState
- In this case we do not need an "empty" choice for the dropdowns. A FeatureState always needs to have both, feature an...
- 04:01 PM EDIT feature request #8486: Indicating doubtful state in navigator and add set-doubtful to Set-Flags menu
- Can you add the changes to the ticket or is this not yet pushed?
- 04:00 PM EDIT feature request #8486 (Resolved): Indicating doubtful state in navigator and add set-doubtful to Set-Flags menu
- I preliminary give this to me to not forgot reviewing the next function. Disabling already is a good solution though ...
- 09:54 AM EDIT feature request #8486 (Closed): Indicating doubtful state in navigator and add set-doubtful to Set-Flags menu
- Indicate the doubtful state in the taxon navigator somehow. E.g. by symbol "?" that we normally use for doubtful info...
- 03:49 PM EDIT Revision 11f52a90 (taxeditor): ref #8475 Remove not needed super method
- 03:34 PM EDIT feature request #8282: Implement placementDoubtful in TaxEditor
- the setDoubtful menu item is now implemented for the navigator, but it was not possible to set the menu to invisible ...
- 01:45 PM EDIT feature request #8282 (Closed): Implement placementDoubtful in TaxEditor
- 12:24 PM EDIT feature request #8282: Implement placementDoubtful in TaxEditor
- ok
- 11:37 AM EDIT feature request #8282: Implement placementDoubtful in TaxEditor
- Andreas Müller wrote:
> Andreas Müller wrote:
> > Also we should add the doubtful flag to the "Set flags" method in... - 11:35 AM EDIT feature request #8282: Implement placementDoubtful in TaxEditor
- Katja Luther wrote:
> the checkbox is moved below the publish checkbox.
works as expected. Ticket can be closed o... - 11:34 AM EDIT feature request #8282 (Feedback): Implement placementDoubtful in TaxEditor
- Andreas Müller wrote:
> Also we should add the doubtful flag to the "Set flags" method in the taxon navigator right ... - 09:52 AM EDIT feature request #8282 (Resolved): Implement placementDoubtful in TaxEditor
- the checkbox is moved below the publish checkbox.
- 09:51 AM EDIT feature request #8282: Implement placementDoubtful in TaxEditor
- Andreas Müller wrote:
> The new field should be close to the taxon node information as it is from taxon node. Curren... - 03:29 PM EDIT Revision e9eec17d (taxeditor): Restructure ui.combo package
- 03:25 PM EDIT Revision 43ed2498 (taxeditor): ref #8282: add setDoubtful to setFlag menu in navigator
- 03:20 PM EDIT Revision d3ca3e94 (taxeditor): ref #8479 fix removeTaxonAgentRelation in TaxEditor
- 03:16 PM EDIT bug #8482 (Closed): java.lang.IllegalArgumentException: Collection is empty in DescriptionType.includesType(DescriptionType.java:151)
- The more sophisticated way is to adapt the underlying method to return an EnumSet, not an ordinary Set. With EnumSet ...
- 01:12 PM EDIT bug #8482 (Feedback): java.lang.IllegalArgumentException: Collection is empty in DescriptionType.includesType(DescriptionType.java:151)
- The problems obviously is fixed and the implementation looks good. Why did you comment the commit with "workaround"? ...
- 03:11 PM EDIT feature request #8235 (Feedback): Create separate menu for term tree editors for each term tree type
- Andreas Müller wrote:
> Generally it works and can be closed.
>
> Open issue (new ticket?) is that Characters can... - 12:06 PM EDIT feature request #8235 (Closed): Create separate menu for term tree editors for each term tree type
- Adjusted the context menu entries. Closing ticket.
- 09:50 AM EDIT feature request #8235: Create separate menu for term tree editors for each term tree type
- Generally it works and can be closed.
Open issue (new ticket?) is that Characters can not be added to Featuretrees... - 09:49 AM EDIT feature request #8235 (Feedback): Create separate menu for term tree editors for each term tree type
- Andreas Müller wrote:
> "New" and "Delete" is enough, we do not need "... Term Tree"
This seems not yet implement... - 02:57 PM EDIT Revision 570b874c (taxeditor): ref #8475 Only enable details view for feature and character term nodes
- 02:51 PM EDIT Revision b3fbf38e (cdmlib): ref #8180 ... and again try to fix the test data
- 02:37 PM EDIT feature request #8447 (Resolved): Adapt setPublishForSubtree to new parameters for pro parte, misapplications and hybrids
- Andreas Müller wrote:
> Andreas Müller wrote:
> > Hybrids are not a set of independent taxa but more a filter on ea... - 11:38 AM EDIT feature request #8447 (Feedback): Adapt setPublishForSubtree to new parameters for pro parte, misapplications and hybrids
- Andreas Müller wrote:
> Hybrids are not a set of independent taxa but more a filter on each group. So we should mayb... - 09:44 AM EDIT feature request #8447 (Resolved): Adapt setPublishForSubtree to new parameters for pro parte, misapplications and hybrids
- moving synonyms and hybrids is done.
- 09:42 AM EDIT feature request #8447: Adapt setPublishForSubtree to new parameters for pro parte, misapplications and hybrids
- Andreas Müller wrote:
> "Pro Parte Synonyme" as pro parte is latin and usually in small letters. However, I don't kn... - 02:36 PM EDIT Revision 0c676821 (taxeditor): ref #8447: disable finish if nothing is selected and hybrids disabled if no taxa or syn selected
- 02:35 PM EDIT Revision 0a788123 (cdmlib): ref #8180 ... and update test data in other projects
- 02:25 PM EDIT Revision 03335762 (cdmlib): ref #8180 fix incorrect UUID in test data
- 02:08 PM EDIT Revision 57ab1b79 (cdmlib): ref #7600 add explict adders for adder and remover methods to EntityCollectionSetterAdapter
- 02:08 PM EDIT Revision b781b5d5 (cdmlib): minor
- 02:08 PM EDIT Revision ed29b851 (cdmlib): ref #8479 make TaxonNode.addAgentRelation public and adapt remove method name
- 02:08 PM EDIT Revision 8b10ca03 (cdmlib): adapt CdmLightClassificationExport to hasXXX methods
- 02:08 PM EDIT Revision 749e8fb4 (cdmlib): ref #8180 Add vocabulary to test data
- 01:06 PM EDIT task #8437 (Resolved): ITermTreeService provides a list method which supports filtering by TermTree.termType,
- my implementation now is generic.
> Also it might be nice to have a little test that it works. Have you tested in ... - 10:28 AM EDIT task #8437 (Feedback): ITermTreeService provides a list method which supports filtering by TermTree.termType,
- Andreas Kohlbecker wrote:
> Agreed ... and implemented in the way you pointed out.
The current implementation is ... - 10:21 AM EDIT task #8437: ITermTreeService provides a list method which supports filtering by TermTree.termType,
- To me it looks like commit 1a5b2194 is not related to *this* ticket. Can you please check?
- 12:59 PM EDIT Revision acdfa184 (cdmlib): ref #8437 using TermType.getGeneralizationOf() to expand the termType restriction
- 12:44 PM EDIT Revision 6d8c9ff0 (cdmlib): add doubtful flag to TaxonNodeDto
- 12:30 PM EDIT Revision aa312f10 (taxeditor): ref #8475 Enhance FeatureStateWizard
- - Pre-select single parent feature if exists
- filter out features without supported categorical states - 12:07 PM EDIT task #8406 (Closed): specimens and occurrence code cleaning and harmonization
- dead code removed.
I think we can close this issue now since all open tasks have been copied to other tickets. - 09:04 AM EDIT task #8406: specimens and occurrence code cleaning and harmonization
- Andreas Kohlbecker wrote:
> thank you for fixing this.
>
> there are two commented code parts in this method:
> ... - 12:05 PM EDIT Revision c1639218 (cdm-dataportal): ref #8406 removing commented dead code
- 12:04 PM EDIT Revision 38f0da6e (taxeditor): ref #8235 adjust context menu items
- 12:04 PM EDIT Revision 0d40526c (taxeditor): remove debug message
- 11:21 AM EDIT Revision 47ca6691 (cdmlib): cleanup
- 11:18 AM EDIT Revision 2c2b731a (cdmlib): fix clone method for User
- 11:17 AM EDIT Revision b0a48ddf (cdmlib): ref #8180 Add Presence state vocabulary to default terms
- 11:08 AM EDIT Revision 04eabef3 (cdmlib): ref #8479 add hasXXX methods to TaxonNodeFilter
- 11:07 AM EDIT Revision e68bc8fa (cdmlib): ref #8479 make TaxonNodeOutStreamPartitioner read only by default.
- 10:34 AM EDIT feature request #7450 (Closed): Allow setPublish for subtree to include misapplied names and pro parte synonyms
- Moved better reporting to new ticket #8487 and close *this* ticket.
- 10:33 AM EDIT feature request #8487 (New): Report results of set publish
- It should include numbers per each group (taxa, synonyms, MAN, ...)
Also those MAN, ppSyns, shared taxa, which wer... - 10:09 AM EDIT bug #8481 (Rejected): NPE when opening feature tree
- I agree. Had a look to the data and for some reason the term with the given id really doesn't exist anymore. Don't kn...
- 09:55 AM EDIT feature request #8470: Handle username constraints in user and group editing
- I will implement this for the next release.
- 09:51 AM EDIT Revision b850c728 (taxeditor): ref #8282: move doubtful checkbox below publish checkbox
- 09:50 AM EDIT Revision aee8ed69 (taxeditor): ref #8447: move hybrids and synonyms
- 09:40 AM EDIT Revision 245bd5bc (taxeditor): ref #8447: only misapplied names or pro parte syn should work as well
- 09:31 AM EDIT Revision 962e47b4 (taxeditor): ref #3472: adapt labels for operation
- 09:31 AM EDIT feature request #3472 (Closed): Update name in source data when changing an accepted taxon into a synonym
- the new ticket is #8478 and the labels are adapted.
08/22/2019
- 04:10 PM EDIT Revision c2b34f0b (taxeditor): Do not show admin menu when not logged in
- 04:10 PM EDIT Revision a9abb9b0 (taxeditor): Fix "General" missing menu items
- 12:05 PM EDIT Revision 0c64a24d (taxeditor): Hide terms menu when not connected
- 11:34 AM EDIT Revision 7f9d6ac4 (cdm-vaadin): removing vaading testbench test
- 11:33 AM EDIT Revision c4ce17b3 (cdm-vaadin): removing runtime artifact
08/21/2019
- 04:12 PM EDIT bug #8481 (Feedback): NPE when opening feature tree
- Looking at the stacktrace this seem like corrupted data as the exception happen during TermRelationBase.getTerm().
... - 04:10 PM EDIT feature request #8485 (Closed): Add column groups to character matrix
- Does not have to be reviewed because still experimental
- 04:09 PM EDIT feature request #8485 (Resolved): Add column groups to character matrix
- Applied in changeset commit:taxeditor|c264cd9262db5bb03b83d94858c559cc985b8bc2.
- 03:09 PM EDIT feature request #8485 (Closed): Add column groups to character matrix
- Groups should reflect the hierarchy of the character tree.
- 04:10 PM EDIT feature request #8235 (Resolved): Create separate menu for term tree editors for each term tree type
- 04:09 PM EDIT Revision 422fbab5 (taxeditor): ref #8235 Fix term tree sub menu and context menu
- 04:09 PM EDIT Revision c264cd92 (taxeditor): fix #8485 Add column groups to character matrix
- 04:09 PM EDIT Revision c9332db4 (taxeditor): Move util method to StoreUtil
- 12:29 PM EDIT bug #8484 (New): Exception is swallowed in taxon navigator
- In a corrupt database with taxon nodes without classification I got the following exception in the log file.
However... - 11:49 AM EDIT task #8483 (New): Return EnumSets in EnumeratedTermVoc.getGeneralizationOf and similar methods
- This may prevent from errors like in #8482
- 11:46 AM EDIT bug #8482 (Resolved): java.lang.IllegalArgumentException: Collection is empty in DescriptionType.includesType(DescriptionType.java:151)
- Applied in changeset commit:cdmlib|244c62c6bee1863dfe79d71e0ecae7bdeb4d06b5.
- 11:18 AM EDIT bug #8482 (Closed): java.lang.IllegalArgumentException: Collection is empty in DescriptionType.includesType(DescriptionType.java:151)
- Can be reproduced by:
http://int.e-taxonomy.eu/cdmserver/integration_palmae/portal/taxon/ce870eca-0422-4a3c-b849-0... - 11:46 AM EDIT Revision 244c62c6 (cdmlib): fix #8482 workaround fix for DescriptionType includes error
- 11:46 AM EDIT Revision 59b19202 (cdmlib): minor
- 11:09 AM EDIT bug #8385 (Resolved): Open issues in DB preferences
- please review
- 09:51 AM EDIT Revision 4a3a3258 (taxeditor): add higher taxon to search options for specimen - taxeditor
- 09:49 AM EDIT Revision 319a163b (cdmlib): add higher Taxon search option to specimen search
- 09:17 AM EDIT feature request #8339: Completely remove the potentially redundant 'acceptedFor' parameter from synonym page
- Hallo Andreas,
danke für deine Einschätzung. Da du mich in meiner Auffassung bestätigst, werde ich das "is accept... - 09:17 AM EDIT feature request #8339: Completely remove the potentially redundant 'acceptedFor' parameter from synonym page
- Hallo Andreas,
das war mir völlig unbekannt, dass wir sowas überhaupt haben/hatten. Daher hatte ich das ganze...
08/20/2019
- 12:52 PM EDIT Revision 7dc115d1 (taxeditor): adapt display of multiple status in distr editor to preference value
- 11:51 AM EDIT bug #8481: NPE when opening feature tree
- I get the same exception when trying to add an InapplicableIf to "Test Feature Tree" -> Citation -> Leaf color -> Ana...
- 11:47 AM EDIT bug #8481 (Rejected): NPE when opening feature tree
- When opening feature tree "Testdasdfa" on rem_conf_am I got
~~~
login : admin
editor version : 5.9.0.20190819225... - 11:45 AM EDIT feature request #8235: Create separate menu for term tree editors for each term tree type
- "New" and "Delete" is enough, we do not need "... Term Tree"
- 11:43 AM EDIT feature request #8235 (Feedback): Create separate menu for term tree editors for each term tree type
- Feature Tree Editors still have "New Structure Tree" and "New Property Tree" submenu.
Each Term type should have its... - 11:04 AM EDIT Revision 49078739 (taxeditor): minor in l10n
08/19/2019
- 04:58 PM EDIT bug #8465 (Closed): Term nodes order in term trees is ignored in term tree editor
- I would rather close this tickets because it was created only to handle the bug. All other issues will be adressed in...
- 04:55 PM EDIT Revision 3250b022 (taxeditor): extract string constant
- 04:55 PM EDIT feature request #8235 (Resolved): Create separate menu for term tree editors for each term tree type
- Applied in changeset commit:taxeditor|362b3a0c58e4b2b8620477ce38a80e2a3553bd36.
- 04:54 PM EDIT Revision 362b3a0c (taxeditor): fix #8235 Create separate menu for term tree editors for each type
- 04:48 PM EDIT Revision 128dc8b1 (cdmlib-apps): syntax for collective species uuid and some other PESITransformer fixes
- 04:47 PM EDIT Revision bb184a5d (cdmlib): syntax for collective species uuid
- 04:22 PM EDIT Revision a85f12b2 (cdmlib): minor
- 04:21 PM EDIT Revision 69f5b141 (cdmlib): some minor adaptations to CdmLightExport and CsvNameExport
- 04:21 PM EDIT Revision e1aea500 (cdmlib): minor
- 04:15 PM EDIT feature request #8480 (Closed): Use DescriptionTypes for matrix descriptions
- 04:14 PM EDIT feature request #8480 (Resolved): Use DescriptionTypes for matrix descriptions
- Applied in changeset commit:cdmlib|0b616910ec8af247ee13843c5058b22ac24efff0.
- 04:11 PM EDIT feature request #8480 (Closed): Use DescriptionTypes for matrix descriptions
- 04:15 PM EDIT feature request #7957 (Closed): Add types for taxon description (as EnumSet)
- Adapted descriptive data set service to use DescriptionType. Tried aggregation and tested display in matrix editor. A...
- 04:15 PM EDIT Revision 491e4eea (cdmlib-apps): ref #8404 add steplist to BgbmInstancesUpdater code
- 04:13 PM EDIT Revision ef8f40dd (taxeditor): fix #8480 Use DescriptionTypes for matrix descriptions
- 04:13 PM EDIT Revision 0b616910 (cdmlib): fix #8480 Use DescriptionTypes in descriptive data set service
- 04:12 PM EDIT Revision f2f47cbd (cdmlib-apps): ref #8479 First version of cdm2cdm import for FauEu (classes created, no real implementation yet)
- 04:11 PM EDIT task #8479 (In Progress): [PESI][FE] Cdm-2-Cdm import for FauEu
- Open issues:
* check if uuids are always kept for taxon nodes (sometimes addChild is used which probably creats co... - 04:09 PM EDIT Revision 9d685c8f (cdmlib-apps): ref 5448 latest changes to Geaessplanzenimport Excel
- 04:06 PM EDIT Revision c525794f (cdmlib-apps): fix to BerlinModelAreaImport. Not sure why this is needed only now
- 04:06 PM EDIT Revision 220dce9c (cdmlib-apps): last adaptation to E+M import (not needed anymore)
- 04:05 PM EDIT Revision ff763abe (cdmlib-apps): latest version of GreeceImageActivator
- 04:04 PM EDIT Revision bff0daf9 (cdmlib-apps): fix some compile errors in ERMS and FauEu
- 04:03 PM EDIT Revision 07de96ff (cdmlib-apps): minor
- 03:21 PM EDIT feature request #8475: Adapt applicable state detail view elements to FeatureState
- Added applicable detail elements to TermNode details view. Available features are filtered to only contain parent fea...
- 03:19 PM EDIT feature request #8475 (Resolved): Adapt applicable state detail view elements to FeatureState
- 03:18 PM EDIT Revision e9af789c (taxeditor): ref #8475 Filter available feature to only parent features
- 02:37 PM EDIT bug #8417: LazyInitializationException in TermDTO for media
- not important for this release -> move to 5.10
- 02:33 PM EDIT feature request #8478 (New): Follow up ticket for update empty name in source handling in TaxEditor
- We need a final implementation with a new wizard including the question if the name in sources should be taken from t...
- 02:30 PM EDIT Revision 719ac7ab (taxeditor): ref #8475 Add applicability detail element to character details view
- 02:27 PM EDIT Revision dc1780ec (taxeditor): ref #8385: fix nomenclatural code preference page - continue
- 01:27 PM EDIT feature request #8304: Name page redirects to according taxon depending on query parameter
- Hi Andreas, I think we have discussed this issue sometime at phone. Do you remember the results? Are they somewhere i...
- 01:06 PM EDIT Revision c9bb625e (taxeditor): ref #8385: fix nomenclatural code preference page
- 01:06 PM EDIT Revision dea4cffc (taxeditor): ref #8385: add allowOverride to AbcdProvider PreferencePage
- 12:33 PM EDIT Revision de4de718 (cdmlib-apps): ref #6794 , ref #7099 adapt E+M activator to terms package structure
- 10:54 AM EDIT Revision 22be3a02 (taxeditor): Update nebula composite table
- 10:16 AM EDIT feature request #3472: Update name in source data when changing an accepted taxon into a synonym
- Ok, in generall this probably makes sense. Maybe I just wasn't used to it yet.
However, if this is the expected beha... - 09:40 AM EDIT feature request #3472: Update name in source data when changing an accepted taxon into a synonym
- Andreas Müller wrote:
> Currently both methods do end in an unexpected state. After running the operation the old ta... - 09:53 AM EDIT Revision f9af366e (taxeditor): ref #8385: smaller changes in preferences
- 09:51 AM EDIT Revision 8437c047 (cdmlib): add preference predicates
- 09:42 AM EDIT Revision 041937b4 (taxeditor): ref #8385: fix problems in preferences
08/17/2019
- 02:10 AM EDIT Revision 54627755 (cdmlib-apps): remove RoteListeDbTaxonImportValidator
- 02:10 AM EDIT Revision 165e1209 (cdmlib-apps): ref #6794 , ref #7099 adapt app-import, pesi, eflora to modelchanges
- 01:02 AM EDIT Revision b5de83c2 (cdmlib): ref #8432 adapt javadoc
- 12:57 AM EDIT Revision 08f5d256 (cdmlib): ref #8432 adapt TermTreeDaoImpl.load such that default feature tree is only created and returned if the default feature tree uuid is passed to it
- 12:54 AM EDIT Revision 55e16d38 (cdmlib): minor
08/16/2019
- 10:36 PM EDIT bug #8385: Open issues in DB preferences
- ~~Restore button does not yet work for Distribution Editor status and area selection preferences~~
this is fixed - 10:33 PM EDIT bug #8385: Open issues in DB preferences
- ~~Distribution editor status selection: changes are not visible in Preferences view after reopening the preferences v...
- 10:27 PM EDIT bug #8385: Open issues in DB preferences
- ~~name.nomenclaturalStatus can not be removed by Reset Default~~
this is fixed. - 10:25 PM EDIT bug #8385: Open issues in DB preferences
- ~~some preferences are not deleted for NameDetailsView => deselect all and reopen preferences => 3 prefs stay selecte...
- 10:21 PM EDIT bug #8385: Open issues in DB preferences
- ~~ABCD import is now implemented on both sides, but "allow override" does not yet exist for "ABCD import provider"~~
... - 10:19 PM EDIT bug #8385: Open issues in DB preferences
- Andreas Müller wrote:
> When opening Peferences - Distribution Editor for the first time the drop downs for some fie... - 10:12 PM EDIT bug #8385: Open issues in DB preferences
- >Name details view can not be set to "default" (always chooses enabled after reopening)
~~Now it always sets it ba... - 10:09 PM EDIT bug #8385 (Feedback): Open issues in DB preferences
- ~~When opening Peferences - Distribution Editor for the first time the drop downs for some fields were completely emp...
- 09:55 PM EDIT feature request #3472: Update name in source data when changing an accepted taxon into a synonym
- Andreas Müller wrote:
> Please open a new ticket for the final implementation with a new wizard including the questi... - 09:51 PM EDIT feature request #3472: Update name in source data when changing an accepted taxon into a synonym
- The labels of the 2 menus should be equal except for the addition about the Name in Source. Is there a reason why you...
- 09:44 PM EDIT feature request #3472: Update name in source data when changing an accepted taxon into a synonym
- Please open a new ticket for the final implementation with a new wizard including the question if the name in sources...
- 09:38 PM EDIT feature request #3472: Update name in source data when changing an accepted taxon into a synonym
- The method with setting the name should be moved down in menu
- 09:37 PM EDIT feature request #3472 (Feedback): Update name in source data when changing an accepted taxon into a synonym
- Currently both methods do end in an unexpected state. After running the operation the old taxon is dirty (and unsaved...
- 09:40 AM EDIT feature request #3472 (Resolved): Update name in source data when changing an accepted taxon into a synonym
- this is implemented now.
The setting of the name in source is configurable, but in editor a new wizard would be ne... - 09:24 PM EDIT bug #8422 (Closed): Make PolytomousKeyGenerator work (correctly)
- I close this ticket as there is a follow up ticket.
- 09:22 PM EDIT feature request #8299 (Feedback): add typification column to scientific name and homotypical group in cdm light
- Testing is time consuming for me. Please ask Walter if it is as expected.
- 09:20 PM EDIT feature request #8334 (Closed): Move sources for type designations to details view
- 09:17 PM EDIT bug #8444 (Closed): Show warning if misapplied names / pro parte synonyms are used more then once
- Hmm, now the warning is also shown if the misapplication is referenced e.g. by an identification key which is not nec...
- 09:05 PM EDIT feature request #8447: Adapt setPublishForSubtree to new parameters for pro parte, misapplications and hybrids
- "Pro Parte Synonyme" as pro parte is latin and usually in small letters. However, I don't know if it is maybe better ...
- 09:01 PM EDIT feature request #8447: Adapt setPublishForSubtree to new parameters for pro parte, misapplications and hybrids
- I think we may move synonyms below taxa as they are the second biggest group. Misapplications and pro parte synonyms ...
- 08:59 PM EDIT feature request #8447: Adapt setPublishForSubtree to new parameters for pro parte, misapplications and hybrids
- Hybrids are not a set of independent taxa but more a filter on each group. So we should maybe move it down (directly ...
- 08:57 PM EDIT feature request #8447 (Feedback): Adapt setPublishForSubtree to new parameters for pro parte, misapplications and hybrids
- If only Misapplications and/or pro parte synonyms are selected the finish button is not enabled but should (at least ...
- 08:43 PM EDIT feature request #8282: Implement placementDoubtful in TaxEditor
- Also we should add the doubtful flag to the "Set flags" method in the taxon navigator right click menu.
- 12:24 PM EDIT feature request #8282 (Feedback): Implement placementDoubtful in TaxEditor
- The new field should be close to the taxon node information as it is from taxon node. Currently it is in the middle o...
- 08:03 PM EDIT Revision 96b27743 (cdmlib): ref #7957 add javadoc to description types
- 07:00 PM EDIT Revision 7e477034 (cdmlib): ref #8441 add tests for FeatureState loading and move some test data to terms package
- 06:27 PM EDIT Revision 73ef4c0b (cdmlib): ref #8441 fix mapping for FeatureState
- 05:29 PM EDIT Revision cf3d9f76 (taxeditor): ref #8475 Create FeatureState in wizard dialog
- 04:33 PM EDIT Revision b02697a5 (cdmlib): minor
- 04:32 PM EDIT Revision 887eb4d0 (cdmlib): move term node DAOs to term package
- 03:35 PM EDIT Revision c34a11ca (taxeditor): ref #7957 adapt tests to DescriptionBase.types not null
- 03:33 PM EDIT Revision 06a2de9b (taxeditor): cleanup
- 03:22 PM EDIT feature request #8477 (Closed): Implement support for TermCollection.allowDuplicates in TaxEditor
- Since #6794 it is possible to distinguish term collections which include duplicates (e.g. structure trees which inclu...
- 03:09 PM EDIT feature request #8476 (Closed): Implement support for TermCollection.isFlat in TaxEditor
- Often term collections are meant to be a flat list or set without hierarchical dependencies. For these collections th...
- 03:09 PM EDIT Revision 593915d2 (taxeditor): ref #8475 First (unstable) implementation of FeatureState details
- 03:08 PM EDIT feature request #8475 (Closed): Adapt applicable state detail view elements to FeatureState
- 02:58 PM EDIT bug #8465: Term nodes order in term trees is ignored in term tree editor
- In general the ordering seems to work now.
- 02:56 PM EDIT bug #8465 (Feedback): Term nodes order in term trees is ignored in term tree editor
- As Term nodes should be not always ordered anymore (TermCollection.orderRelevant flag) we could implement this alread...
- 02:45 PM EDIT feature request #8474 (Closed): Make TermCollection.orderRelevant usable for TermTrees
Dazu müsste es:
1. ~~editierbar sein~~
2. ~~Der TermTree müsste unterschiedlich sortiert angezeigt werden, je n...- 01:22 PM EDIT Revision c1662123 (taxeditor): ref #8385: adapt preference keys to preference predicates
- 01:22 PM EDIT bug #8473 (New): Migrate from GrantedAuthoritiesImpl to CdmAuthority and Role
- First of all the handling of authorities needs to be migrated and tested to AuthorityBase (by AK). Once this is done ...
- 01:14 PM EDIT bug #4884 (Closed): Update Reference_AUD.refType to allow NULL
- I guess this works.
- 12:49 PM EDIT Revision 94c6459b (taxeditor): fix search dialog default handling
- 12:41 PM EDIT feature request #8472 (Closed): Transmission engine for distribution aggregation needs to be adapted to new DescriptionBase.types
- Currently it uses marker type "Computed" to mark the descriptions.
... also needs update script for existing descr... - 12:38 PM EDIT feature request #7957: Add types for taxon description (as EnumSet)
- This has been implemented now as an EnumSet for better performance.
Please review.
- 10:38 AM EDIT feature request #7957 (Resolved): Add types for taxon description (as EnumSet)
- Applied in changeset commit:cdmlib|1962891319edeb12380aa69994467f674a96ce96.
- 12:35 PM EDIT feature request #8471 (Closed): Computed descriptions should be disabled in TaxEditor
- Taxon descriptions being computed (DescriptionBase.types contains COMPUTED or AGGREGATED) should be disabled for edit...
- 12:16 PM EDIT feature request #8398: Add nomenclatural code edition to ruleConsidered
- As this was your (phycobank) requirement I give it to you for review.
- 12:15 PM EDIT feature request #8410: Add nomenclatural code edition to ruleConsidered in TaxEditor
- Maybe we can do this in 5.10 latest so it is close to the model change.
I think we should add it to configuration ... - 12:14 PM EDIT Revision 0ae3531b (taxeditor): minor
- 12:14 PM EDIT Revision a60ccec4 (taxeditor): ref #8385: enable apply button when provider added or removed from preference
- 12:14 PM EDIT Revision f9840e06 (taxeditor): ref #8385: correct preference handling for provider list
- 12:12 PM EDIT feature request #8404 (Closed): Add update step list within updaters
- Seems to work as expected and is very nice.
- 12:11 PM EDIT feature request #8442 (Closed): Add fields to handle external terms to DefinedTermBase or TermBase
- So I close this ticket.
- 12:10 PM EDIT feature request #8454: Only allow certain patterns as username and groupname
- This should be fixed. Who ever wants please review. I tested creating a new user and a group in TaxEditor. For both w...
- 12:04 PM EDIT feature request #8470 (Closed): Handle username constraints in user and group editing
- Since #8454 a regex exist for usernames and groupnames.
For new usernames and groups the TaxEditor should validat... - 11:47 AM EDIT feature request #8441: Add FeatureState class
- Please review.
Maybe there are issues with orphan removal handling. - 11:45 AM EDIT feature request #8441 (Resolved): Add FeatureState class
- This is implemented, old implementation still exists in parallel. Should be removed with next update script.
SDD I... - 11:41 AM EDIT feature request #8469 (In Progress): Open PolytomousKeyGenerator issues
- * ~~adapt dependency handling to new FeatureState handling~~
* in general improve the handling of dependencies, mayb... - 11:35 AM EDIT task #8468 (Closed): Remove old InapplicableIf tables
- 11:03 AM EDIT Revision 525deb12 (taxeditor): adapt test H2 to schema v5.8.2
- 11:02 AM EDIT Revision 34062138 (cdmlib): ref #7959 rename DescriptionState -> DescriptionType and fix bug for enum loading
- 10:48 AM EDIT Revision f922cb22 (cdmlib): adapt cached model to 5.8.2
- 10:43 AM EDIT Revision 7134ca41 (cdm-vaadin): adapt test H2 to schema v5.8.2
- 10:42 AM EDIT Revision f81da2cc (cdm-vaadin): minor
- 10:38 AM EDIT Revision eeafa6f5 (cdmlib): for the moment set TermCollection.orderRelevant default to true
- 10:36 AM EDIT Revision beb18173 (cdmlib): adapt TestModelUpdate to run for all 3 H2 DBs
- 10:34 AM EDIT Revision a0d6f613 (cdmlib): adapt test H2 to model changes v5.8.2
- 10:34 AM EDIT Revision 9276e073 (cdmlib): ref #7957 add not null to update script for DescriptionBase.types
- 10:15 AM EDIT Revision a3d196bc (taxeditor): fix test for swapAcceptedwithSynonym
- 10:14 AM EDIT Revision 3ff169c5 (taxeditor): fix test for swapAcceptedwithSynonym
- 10:10 AM EDIT Revision b1d5cef3 (cdmlib): Cleanup
- 10:10 AM EDIT Revision 20ffe9b7 (cdmlib): ref #7099 , ref #8464 some adaptions on constraints for CdmAuthority
- 10:10 AM EDIT Revision 19628913 (cdmlib): fix #7957 add types to DescriptionBase
- 10:10 AM EDIT Revision 49405267 (cdmlib): Use AccessType Field for Character class
- 10:10 AM EDIT Revision ec5f2748 (cdmlib): ref #8441 adapt testdata and SDDDocumentBuilder to FeatureState
- 10:10 AM EDIT Revision ddda469d (cdmlib): minor
- 10:10 AM EDIT Revision abe8cce6 (cdmlib): ref #8441 further implementation for FeatureState and inapplicableIf
- 10:10 AM EDIT Revision 4e36de56 (cdmlib): ref #8441 FeatureState classes added and TermNode adapted
- 10:00 AM EDIT Revision 73a78654 (cdmlib): ref #8467 add commented code
- - un-comment when cloned descriptions can be added to taxon
descriptions as sources - 09:37 AM EDIT Revision 682f52a4 (taxeditor): ref #3472: adapt editor to changes in methods moving descriptions
- 09:01 AM EDIT Revision fe8fa9b2 (cdmlib): ref #3472: fix set name in source
08/15/2019
- 04:09 PM EDIT feature request #7597 (Closed): Aggregate and persist descriptions on taxon level
- Closing this feature. No review needed as this is still experimental. Follow up ticket #8467
- 04:08 PM EDIT feature request #8467 (Closed): Save a "snapshot" of the SpecimenDescriptions used for aggregation
- When aggregating SpecimenDescriptions to a TaxonDescriptions the SDs used should be cloned and associated as sources ...
- 03:57 PM EDIT feature request #8464: Make AuthorityBases unique
- This seems to be more difficult then I thought.
In general hibernate allows the ,uniqueConstraints=@UniqueConstra... - 02:59 PM EDIT feature request #8441 (In Progress): Add FeatureState class
- 02:21 PM EDIT bug #8465 (Resolved): Term nodes order in term trees is ignored in term tree editor
- Applied in changeset commit:taxeditor|74a9e9d7da34b3e2d6a895a7b091364125c6f648.
- 12:19 PM EDIT bug #8465: Term nodes order in term trees is ignored in term tree editor
- So, if the flag is switched on, the tree should be ordered by tree order, otherwise alphabetically (or by any other c...
- 12:06 PM EDIT bug #8465: Term nodes order in term trees is ignored in term tree editor
- Note: The new TermCollection base class has a flag now called "orderRelevant". This should in future decide if the or...
- 10:32 AM EDIT bug #8465 (Closed): Term nodes order in term trees is ignored in term tree editor
- ich hatte gerade einen neuen Feature Term "Chemophenetics" für den Cichorieae Feature Tree geschaffen , den wollte ic...
- 02:21 PM EDIT Revision 74a9e9d7 (taxeditor): fix #8465 Do not sort term nodes with term tree comparator
- 01:57 PM EDIT Revision 743a64ea (cdmlib): ref #3472: make setting of name in source configurable
- 01:52 PM EDIT task #8466 (Closed): Delete FeatureTree tables
- FeatureTree has been moved to TermCollection. The old tables have not yet been deleted to have the chance to find pos...
- 12:39 PM EDIT feature request #8442: Add fields to handle external terms to DefinedTermBase or TermBase
- Andreas Müller wrote:
> This should be fixed. Also added new field "importMethod" and extracted all data to an exter... - 10:41 AM EDIT Revision 6c4f05ea (cdmlib): ref #3472: add nameInSource in makeTaxonNodeSynonym
- 10:34 AM EDIT Revision d1d76c46 (cdmlib): ref #3472: swap Synonym and accTaxon should move all taxon information to the new taxon
- 10:24 AM EDIT Revision 56d0ef92 (cdmlib): add add unitGUID to abcd import
- 10:22 AM EDIT Revision f5050d21 (cdmlib): update caches prgress monitor with name
- 10:20 AM EDIT Revision af1131f2 (cdmlib): ref #8385: add method to get voc by uuid
- 10:17 AM EDIT Revision 905236e8 (taxeditor): ref #8385: adapt strucutre of db prefs to local prefs
- 09:50 AM EDIT Revision fddfd97b (taxeditor): missing l10n files
- 09:39 AM EDIT Revision da38bb5e (taxeditor): multiline text fiedl for reference title
- 09:39 AM EDIT Revision c03d27b9 (taxeditor): ref #8447: move shared taxa and disable if not needed
- 09:39 AM EDIT Revision 0c8bd397 (taxeditor): ref #8447: add man and pp to setPublish configurator wizard
- 09:15 AM EDIT feature request #8334 (Resolved): Move sources for type designations to details view
08/14/2019
- 11:45 AM EDIT feature request #7957 (In Progress): Add types for taxon description (as EnumSet)
- 11:04 AM EDIT Revision 9f84cafb (cdmlib): Adapt uniqueness and notNull for some authority parameters
- 10:59 AM EDIT task #7099: Make CdmAuthority a persistable class
- forgot to implement uniqueness. Moved to #8464
- 10:41 AM EDIT task #7099 (Resolved): Make CdmAuthority a persistable class
- This is implemented for now. Old GrantedAuthorities still exist and are in use but we could easily switch to new ones...
- 10:56 AM EDIT feature request #8464 (New): Make AuthorityBases unique
- The old GrantedAuthorityImpl.authority was unique and NotNull. This was forgotten to implement when implementing CdmA...
- 10:51 AM EDIT feature request #8442 (Resolved): Add fields to handle external terms to DefinedTermBase or TermBase
- This should be fixed. Also added new field "importMethod" and extracted all data to an external embeddable class "Ext...
- 10:48 AM EDIT feature request #3972 (Closed): Strictly validate username to not null and not empty
- This should be fixed by fixing #8454
- 10:47 AM EDIT feature request #8454 (Resolved): Only allow certain patterns as username and groupname
- This should be solved now and seems to work. Still needs testing in TaxEditor and maybe other surroundings.
- 10:45 AM EDIT bug #8429 (Resolved): Rename DeterminationEvent_Reference.setOfReferences_id
- This is fixed now by renaming the parameter in model from setOfReferences to references.
Making it a set of sourc... - 10:45 AM EDIT feature request #8463 (New): Make DeterminationEvent.references sources
- Currently the link to Reference but they should link to Source. DeterminationEvent should probably become a Sourceabl...
08/13/2019
- 05:38 PM EDIT Revision 69944d4b (cdmlib): update model cache for schema version 5.8.1
- 05:02 PM EDIT Revision d9054fe5 (taxeditor): adapt TaxEditor to Schema changes v5.8.1
- 04:46 PM EDIT Revision d742db9a (cdmlib): ref #7099 preliminary removing initialization of authorities to avoid LIE in AuthenticationPresenterTest
- 04:24 PM EDIT Revision 8b58ece8 (cdm-vaadin): adapt Vaadin to model changes v5.8.1
- 03:16 PM EDIT Revision 0059f9df (taxeditor): adapt test H2 to schema v5.8.1
- 03:13 PM EDIT Revision cf816bf2 (cdmlib): adapt test H2 to schema v5.8.1
- 03:13 PM EDIT Revision 3f6ffa04 (cdmlib): adapt poms to correct handling of versions => move versions to parent pom
- 03:13 PM EDIT Revision 8d58f4b9 (cdmlib): ref #8454 fix UserAndGroupServiceImplTest
- 03:13 PM EDIT Revision 9bee6bd5 (cdmlib): ref #8442 fix some jaxb annotations
- 03:13 PM EDIT Revision d7b78aa0 (cdmlib): ref #8442 add externallyManaged to UserDefined classes for matching and merging
- 03:13 PM EDIT Revision c39b4bdb (cdmlib): minor
- 03:13 PM EDIT Revision 609086da (cdmlib): ref #8442 jaxb for externallyManaged
- 03:13 PM EDIT Revision 43f0e2a1 (cdmlib): ref #8442 , ref #8429 adapt test schemas to model changes
- 03:13 PM EDIT Revision dd017de5 (cdmlib): ref #8442 update script for externally managed, ref #8454 update script for username patterns
- 03:13 PM EDIT Revision 040eb2b6 (cdmlib): cleanup
- 03:13 PM EDIT Revision 8de7077d (cdmlib): add IRuleConsidered
- 03:13 PM EDIT Revision 7fd108f2 (cdmlib): ref #8442 add ExternallyManagedImport
- 03:13 PM EDIT Revision 816fdaa0 (cdmlib): ref #8442 add externallyManaged to DefinedTermBase and TermVocabulary and make ExternallyManaged an embeddable class
- 03:13 PM EDIT Revision 4f817727 (cdmlib): ref #8442 move AuthorityType to model.common
- 03:13 PM EDIT Revision 6c8124b2 (cdmlib): ref #7099 update script for CdmAuthority tables
- 03:13 PM EDIT Revision 7b733b2a (cdmlib): ref #8429 rename DeterminationEvent.setOfReferences to DeterminationEvent.references
- 03:13 PM EDIT Revision fbe7ab55 (cdmlib): adapt model version number
- 03:13 PM EDIT Revision 83615ec3 (cdmlib): ref #7099 fix loading of EnumSet and add tests
- 03:13 PM EDIT Revision b6177938 (cdmlib): ref #7099 add CdmAuthority to User, remove CDM_VIEW from tests, cleanup
- 03:13 PM EDIT Revision 6183e939 (cdmlib): ref #7099 further updates to CdmAuthority for persistance + add Role class
- 03:13 PM EDIT Revision 7fbe6eb3 (cdmlib): ref #7099 rename CdmPermissionClass to PermissionClass
- 03:13 PM EDIT Revision 55ad1a65 (cdmlib): ref #7099 adapt CdmAuthority class
- 03:13 PM EDIT Revision d5579203 (cdmlib): ref #7099 rename model.rights to model.permission
- 03:13 PM EDIT Revision 39a05e3b (cdmlib): ref #7099 move CRUD and Operation to model
- 03:13 PM EDIT Revision dbc1a185 (cdmlib): ref #7099 minor
- 03:13 PM EDIT Revision 0377d70f (cdmlib): ref #7099 move CdmPermissionClass to model
- 03:13 PM EDIT Revision 899b7d66 (cdmlib): ref #7099 move user, group and GrantedAuthorityImpl to new rights package
- 03:13 PM EDIT Revision 3ff6cdef (cdmlib): ref #8454 add regex to User.username and Group.name
- 03:13 PM EDIT Revision 0b091e82 (cdmlib): adapt SchemaUpdater_55_58 to new version
- 03:09 PM EDIT Revision 8586ad49 (cdm-vaadin): adapt test H2 to schema v5.8.1
- 12:02 PM EDIT bug #8462 (Closed): NoSuchElementException accessing Optional<RegistrationDTO> in RegistrationWorkingsetPresenter.findRegistrationInContext()
- Reported by Henning on 04.08.19 19:17
**Fehler in PhycoBank, 102010, Treptacantha ballesterosii**
Beim Specie... - 11:48 AM EDIT feature request #8461 (Closed): Change term URI of TDWG Term to identifier in additivity ontology
- This should be done in bulk with a script
- 11:20 AM EDIT feature request #8135 (Closed): Implement verbatim type information in TaxEditor
- closing ticket -> translation will be handled in #8459
- 11:07 AM EDIT feature request #8460 (New): Show examples in text field
- Some text field have labels that are not intuitive if you are not familiar with the EDIT platform. Having some inform...
- 11:01 AM EDIT feature request #8459 (New): i18n for taxeditor details view labels
- 09:17 AM EDIT Revision 53627082 (taxeditor): ref #7597 Re-load dataset descriptions after aggregation
- - adapt to service layer change (use UUID as parameter)
- 09:14 AM EDIT Revision 0339827e (taxeditor): ref #7597 Clear matrix descriptions before loading them
- 09:13 AM EDIT Revision 845c6b16 (cdmlib): ref #7597 Fix deletion of aggregated descriptions
- 09:12 AM EDIT Revision 7353eb10 (cdmlib): cleanup
- 09:12 AM EDIT Revision 8efb1fe4 (cdmlib): ref #7597 Use UUID for service call
- 08:40 AM EDIT Revision 7bba825c (taxeditor): ref #8334 Move sources in details view to bottom
08/12/2019
- 11:41 PM EDIT task #8458: document FieldUnitDTOOccurrenceServiceImpl.findFieldUnitDTO()
- As this has been worked on recently we should do it soon.
- 05:39 PM EDIT task #8458 (Closed): document FieldUnitDTOOccurrenceServiceImpl.findFieldUnitDTO()
- `FieldUnitDTO OccurrenceServiceImpl.findFieldUnitDTO(DerivateDTO derivedUnitDTO, Collection<FieldUnitDTO> fieldUnits,...
- 11:36 PM EDIT task #8456: FieldUnitDTO: remove newInstanceMethod
- Passing this ticket to Katja or Patrick as I never worked on/with this class.
Note: syntax of the method name is a... - 05:31 PM EDIT task #8456 (Closed): FieldUnitDTO: remove newInstanceMethod
- copied from #8414
FieldUnitDTO providing a newInstance method. This has to be removed:
~~~
/**
* @pa... - 06:20 PM EDIT Revision a083a070 (cdmlib): ref #7597 Fix concurrent modification exception
- 06:20 PM EDIT Revision 644cd491 (taxeditor): ref #7597 Temporarily disable refresh after aggregation
- 05:44 PM EDIT bug #8448 (Closed): Maps settings > Bounding box inconsistent
- works
- 05:43 PM EDIT task #8414 (Closed): occurrence controller code cleaning and harmonization
- all remaining tasks copied to new tickets
- 05:36 PM EDIT task #8457 (Duplicate): FieldUnitDTO: remove taxonRelatedDerivedUnits
- duplicates #8425
- 05:33 PM EDIT task #8457 (Duplicate): FieldUnitDTO: remove taxonRelatedDerivedUnits
- copied from #8414
FieldUnitDTO.taxonRelatedDerivedUnits is an obsolete remain from an older implementation an ne... - 05:08 PM EDIT task #8166 (Closed): Adapt dataportal to term structure changes
- profile settings are working in the above test portals (palmweb has not been tested, since there is no cdm test insta...
- 04:47 PM EDIT bug #8440 (Closed): specimen accession numbers link to specimen page
- Wolf-Henning Kusber wrote:
>
> Warning in Test portal
> Notice: Array to string conversion in theme_item_list(... - 04:46 PM EDIT task #8455 (New): Show specimen preferredStableURL as external link icon?
- copied from #8440 , needs discussion.
- 04:27 PM EDIT task #8449 (Closed): improve layout of registration page to clearly show the nomencaltural act
- 04:26 PM EDIT task #8436 (Closed): featureTree/* services should filter the termTrees by the TermType Feature
- 04:18 PM EDIT Revision 1a5b2194 (cdmlib): ref #8437 fixing LIE in DerivedUnitFacadeController
- 03:43 PM EDIT Revision 51c30254 (cdmlib): ref #7597 Delete all aggregated descriptions when re-aggregating
- 01:38 PM EDIT task #8406 (Feedback): specimens and occurrence code cleaning and harmonization
- thank you for fixing this.
there are two commented code parts in this method:
~~~php
// $specimen_t... - 11:27 AM EDIT task #8406: specimens and occurrence code cleaning and harmonization
- the view for the search for the genetic accession number did not work anymore. I fixed it. Please have a look.
- 01:27 PM EDIT Revision f41c2b5e (cdm-dataportal): avoid accessing uninitialized variable
- 01:27 PM EDIT Revision 1f2c4dcf (cdm-dataportal): ref #8449 adapting test
- 01:27 PM EDIT Revision d80b3059 (cdm-dataportal): ref #8440 adapting and extending tests
- 12:34 PM EDIT feature request #8411: additional requirements for export/import path selection
- the wizard shows the expanded view of the file system to the last selected diectory. So the last selected directory i...
- 12:25 PM EDIT bug #8446 (Closed): Allow setPublish for subtree to filter for hybrids
- seems to work as expected
- 12:06 PM EDIT task #8437 (Resolved): ITermTreeService provides a list method which supports filtering by TermTree.termType,
- Agreed ... and implemented in the way you pointed out.
- 12:05 PM EDIT Revision 19b30c4f (cdmlib): ref #8437 ITermTreeService termType Feature as filter includes also Character
- 11:27 AM EDIT Revision ff51c1cd (cdm-dataportal): ref #8406: fix the view for the specimen hierarchy to a genetic acc nr
- 10:49 AM EDIT feature request #8447 (Resolved): Adapt setPublishForSubtree to new parameters for pro parte, misapplications and hybrids
- please review
- 10:01 AM EDIT Revision 8cb3295a (cdmlib): setters of subtreeConfigurator should be void again, adapt tests
08/09/2019
- 02:36 PM EDIT bug #8444 (Resolved): Show warning if misapplied names / pro parte synonyms are used more then once
- So I change ticket title for documentation
- 11:59 AM EDIT bug #8444: Show warning if misapplied names / pro parte synonyms are used more then once
- now the warning is implemented as well.
- 11:59 AM EDIT bug #8444 (Worksforme): Show warning if misapplied names / pro parte synonyms are used more then once
- ahh, yes, sorry, I didn't expect the taxon details to be in a subsection. But this makes sense. We can close this tic...
- 11:19 AM EDIT bug #8444: Show warning if misapplied names / pro parte synonyms are used more then once
- the publish flag is already implemented (maybe the taxon details are collapsed?).
- 12:58 PM EDIT Revision da93b804 (taxeditor): minor
- 12:32 PM EDIT Revision d12aae39 (cdmlib): ref #8282: adapt save taxonnode to new doubtful attribute
- 12:31 PM EDIT feature request #8282 (Resolved): Implement placementDoubtful in TaxEditor
- this is implemented now, please review.
- 12:17 PM EDIT feature request #8282 (In Progress): Implement placementDoubtful in TaxEditor
- 12:30 PM EDIT Revision 4601cb73 (taxeditor): ref #8282: adapt editor to new doubtful attribute in taxonnode
- 12:13 PM EDIT task #7099 (In Progress): Make CdmAuthority a persistable class
- 12:11 PM EDIT Revision bd2dfdfa (cdmlib): cleanup
- 11:59 AM EDIT Revision 5f3e1fcb (taxeditor): fix #8444: add warning if taxon used in taxonrelationship is used more than once
- 10:36 AM EDIT feature request #8299: add typification column to scientific name and homotypical group in cdm light
- please review
- 10:16 AM EDIT feature request #8454 (In Progress): Only allow certain patterns as username and groupname
- 09:20 AM EDIT feature request #8454 (Closed): Only allow certain patterns as username and groupname
- ... to avoid unwanted characters like ;,ö*... Also avoid unvisible characters, whitespaces and linebrakes this way.
...
08/08/2019
- 10:08 PM EDIT Revision 3de07382 (cdmlib): minor
- 03:53 PM EDIT bug #8430 (Closed): maps zoom to wrong bbox with some layers
- Seems to work correctly. I could not find a non-working portal. Also checked some production portals as this was rele...
- 03:42 PM EDIT feature request #8135 (Feedback): Implement verbatim type information in TaxEditor
- Works as expected. Minor issue: translation for button is missing. Can be closed afterwards.
- 03:39 PM EDIT feature request #8334 (Feedback): Move sources for type designations to details view
- Not designated (for SpecimenTypeDesignation) shows up below the sources, but should be above. Sources should be on bo...
- 03:24 PM EDIT Revision 63ada120 (taxeditor): ref #7597 Use aggregation config (recurse aggregation = true)
- 03:24 PM EDIT Revision dead0aaf (cdmlib): ref #7597 Add configuration to data set aggregation
- - implement recursive aggregation
- 02:26 PM EDIT bug #8446: Allow setPublish for subtree to filter for hybrids
- Kajta, can you please review functionality once implemented in TaxEditor?
- 02:22 PM EDIT bug #8446 (Resolved): Allow setPublish for subtree to filter for hybrids
- Applied in changeset commit:cdmlib|c44fd9bd6420a032ab1e04c3b92ee4c20f2aac93.
- 02:24 PM EDIT Revision 77f78293 (cdmlib): cleanup
- 02:22 PM EDIT Revision c44fd9bd (cdmlib): fix #8446 Allow setPublish for subtree to filter for hybrids
- 02:05 PM EDIT Revision 9c128421 (taxeditor): ref #8385: adapt local and db preference pages
- 02:03 PM EDIT Revision fe64715e (cdmlib): ref #8385: add new preference predicates
- 01:42 PM EDIT task #8449: improve layout of registration page to clearly show the nomencaltural act
- The layout is fully satisfying (for new names/types and types)
Order also checked for example for a type only:
... - 10:24 AM EDIT feature request #8453 (New): Improve performance of DescriptiveDataSet
- A DescriptiveDataSet stores taxon and specimen descriptions and a set of taxon nodes. While taxon descriptions are di...
- 09:38 AM EDIT bug #8440: specimen accession numbers link to specimen page
- Tested for Registration page, name page, and specimen page.
Example: Gomphonella acsiae
Links are working.
W... - 09:22 AM EDIT task #8424: evaluate publish flags in the full derivative path
- As far as I know the SpecimenOrObservation publish flag is not evaluated by webservices at all, yet (or only in very ...
- 09:14 AM EDIT feature request #8452 (New): [DISCUSS] Should taxa hava an explicit taxon description for specimen?
- Maybe it would be helpful to separate taxon descriptions with specimens and those with other description elements.
... - 09:07 AM EDIT feature request #8451 (New): Link specimen to taxon via Drag and Drop
- It would be a nice feature to be able to link a specimen to a taxon via drag&drop. This could be done from the specim...
- 08:36 AM EDIT feature request #7589 (Closed): Performance, UX and stability patches for CharacterMatrix
- 08:36 AM EDIT feature request #7589: Performance, UX and stability patches for CharacterMatrix
- Closing this ticket to avoid getting to big -> Opening new ticket with specific UX issues -> #8450
- 08:35 AM EDIT feature request #8450 (New): Character matrix UX
- **Details View für Einzelwerte in Matrix**
wenn ich in der Matrix den Details View verwende (was sicher selten der F...
08/07/2019
- 10:00 PM EDIT task #8449 (Resolved): improve layout of registration page to clearly show the nomencaltural act
- please review
- 09:44 PM EDIT task #8449 (Closed): improve layout of registration page to clearly show the nomencaltural act
- As discussed with Henning on Friday 2nd of August 2019, we decided for the following solution:
* the nomenclatural... - 09:47 PM EDIT Revision c5abae79 (cdm-dataportal): ref #8449 registration page: better emphasizing the nomenclatural act to make clear what has been registered
- 04:54 PM EDIT feature request #8403 (Rejected): name page: show types specimens as expandable derivate tree
- 04:54 PM EDIT feature request #8403 (Closed): name page: show types specimens as expandable derivate tree
- Andreas Kohlbecker wrote:
> code need to be cleaned up
done!
- 04:53 PM EDIT Revision a44d210c (cdm-dataportal): ref #8403 removing rejected implementation
- 04:50 PM EDIT bug #8440 (Resolved): specimen accession numbers link to specimen page
- please review
- 04:48 PM EDIT Revision e69c4103 (cdm-dataportal): ref #8440 consistent display of type specimens: link to specimen page and showing preferredStableUri
- 04:06 PM EDIT Revision 2ac046d4 (taxeditor): Add missing dependency
- 03:52 PM EDIT bug #8448 (Resolved): Maps settings > Bounding box inconsistent
- 03:37 PM EDIT bug #8448 (Closed): Maps settings > Bounding box inconsistent
- according to the settings documentation the *Bounding box* needs to be entered in degree.
After fixing #8430 using... - 03:51 PM EDIT Revision 8e2d0259 (cdm-dataportal): ref #8448 changing the map setting to use the projection conform bbox
- 03:07 PM EDIT Revision 2e63da0d (cdm-dataportal): Merge tag '5.8.3' into develop
- tagging hotfix 5.8.3
- 03:07 PM EDIT Revision 51624a65 (cdm-dataportal): Merge branch 'hotfix/5.8.3'
- 03:07 PM EDIT Revision 7cc1655b (cdmlib): fix #7450 try to fix failing test when running in test suite
- 03:06 PM EDIT Revision e39effec (cdm-dataportal): ref #8430 fixing pojection definition for epsg:7777777 (euromed)
- 02:44 PM EDIT Revision 89eab8c6 (taxeditor): Revert "Fix potential NPE"
- This reverts commit 5e45f5399ffa158d92ef215ba484f3f230e6a5ae.
- 02:44 PM EDIT Revision 40ba0cf9 (taxeditor): Revert "Disable (unused) context menu"
- This reverts commit aa85a093ec65f0492e9d73cffd87f87be105e438.
- 02:39 PM EDIT Revision 49c7b44e (cdm-dataportal): ref #8430 fixing pojection definition for epsg:7777777 (euromed)
- 02:14 PM EDIT Revision 528e8632 (taxeditor): ref #7597 Fix potential class cast exception
- 01:44 PM EDIT feature request #8447 (Closed): Adapt setPublishForSubtree to new parameters for pro parte, misapplications and hybrids
- Also have in mind that the includeSharedTaxa parameter is valid for accepted taxa, misapplications and pro parte syno...
- 01:42 PM EDIT bug #8446 (Closed): Allow setPublish for subtree to filter for hybrids
- In E+M we do not want to set the publish flag to true for hybrids so we need a filter to do so. Alternatively we shou...
- 01:39 PM EDIT feature request #7450 (Resolved): Allow setPublish for subtree to include misapplied names and pro parte synonyms
- Applied in changeset commit:cdmlib|5fb16579cd1fbce2bfa19f12bebc0d4711b23b90.
- 01:39 PM EDIT Revision 5fb16579 (cdmlib): fix #7450 allow setPublish for subtree to include misapplied names and pro parte synonyms
- 12:15 PM EDIT task #8445 (Closed): improve service description
- a.mueller wrote:
„UTIS connects the web services of the Pan-European Species directories Infrastructure (EU-Nomen)... - 09:31 AM EDIT Revision 5593cba0 (cdmlib): fixing NPE in DerivedUnitFacadeCacheStrategy.getUnitNumber()
08/06/2019
- 02:40 PM EDIT Revision 8a1e1e44 (cdmlib): cleanup
- 02:14 PM EDIT Revision 27296e89 (cdmlib): cleanup and stream API for ForSubtreeConfigurator
- 02:13 PM EDIT Revision 98df38b9 (cdmlib): pretty print testSetSecundumForSubtree test data
- 01:16 PM EDIT Revision 8f81816e (taxeditor): adapt setPublishFlagConfigurator constructor call
- 01:14 PM EDIT Revision 278d7608 (taxeditor): adapt setPublishFlagConfigurator constructor call
- 01:03 PM EDIT Revision a138d490 (taxeditor): adapt setPublishFlagConfigurator constructor call
- 12:53 PM EDIT Revision e867c225 (cdmlib): ref #7450 implement interfaces and signatures for setPublishForSubtree for misapplications and ppSyns (not yet implemented)
- 12:44 PM EDIT Revision de671fe5 (cdmlib): minor
- 12:35 PM EDIT Revision 16bef6ee (taxeditor): ref #7597 Invoke aggregation in parallel thread
- - add progress monitor
- 12:35 PM EDIT Revision aa85a093 (taxeditor): Disable (unused) context menu
- 12:35 PM EDIT Revision 50cf49ac (taxeditor): Fix potential NPE
- 12:35 PM EDIT Revision 5e45f539 (taxeditor): Fix potential NPE
- 12:34 PM EDIT Revision e7eee67d (cdmlib): ref #7597 Add progress monitor to aggregation service call
- 11:19 AM EDIT Revision ab6c57c0 (cdmlib): ref #8365: fix NPE in abcd tests
- 10:02 AM EDIT Revision 4e9e938f (cdmlib): use configurator for setPublish flag
08/05/2019
- 04:19 PM EDIT Revision f928093b (cdmlib): ref #7450 revert the incorrect c&p from last commit
- 04:11 PM EDIT Revision 53df0a40 (cdmlib): ref #7450 use PublishForSubtreeConfigurator in TaxonNodeService
- 04:11 PM EDIT Revision c1a30095 (cdmlib): cleanup
- 04:11 PM EDIT Revision 878c54ea (cdmlib): ref #8429 add SchemaUpdater_58_581 and implement update script for setOfReferences renaming
- 04:11 PM EDIT Revision 7bd0a31e (cdmlib): minor
- 02:01 PM EDIT bug #8444 (Closed): Show warning if misapplied names / pro parte synonyms are used more then once
- ... please also consider a "is used more then once" check for such relations
- 12:42 PM EDIT bug #8443: a user with only rights on a subtree can edit taxa and names of another subtree
- is this only an UI issue or is it also a cdmlib-security issue?
- 12:14 PM EDIT bug #8443 (New): a user with only rights on a subtree can edit taxa and names of another subtree
- the user with rights on a subtree is able to edit taxa outside the defined subtree. The only limitation is creation a...
- 10:58 AM EDIT task #8435: Reduce logging amount of exports and other long running tasks
- Katja, can you work on this?
- 10:55 AM EDIT task #8437: ITermTreeService provides a list method which supports filtering by TermTree.termType,
- Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > Have you tested with termType = Character which is a subtype ... - 10:37 AM EDIT task #8437: ITermTreeService provides a list method which supports filtering by TermTree.termType,
- Andreas Müller wrote:
> Have you tested with termType = Character which is a subtype for Feature. I don't think the ... - 09:59 AM EDIT Revision f93dab43 (cdmlib): Revert "minor - fix merge conflict"
- This reverts commit fc3932ac4dd186b6f5809863356912f949ae202d.
- 09:51 AM EDIT Revision fc3932ac (cdmlib): minor - fix merge conflict
08/02/2019
- 08:39 PM EDIT feature request #8442 (Closed): Add fields to handle external terms to DefinedTermBase or TermBase
- Similar to those created for Reference (#6663).
The fields are
* last retrieved
* externalId
* externalLink
... - 08:25 PM EDIT feature request #8441 (Closed): Add FeatureState class
- ... for inapplicableIf and onlyApplicableIf states and add/change the relationships to TermNode
- 08:22 PM EDIT bug #8429 (In Progress): Rename DeterminationEvent_Reference.setOfReferences_id
- For now we do the column renaming with a model change.
DeterminationEvent_Reference.setOfReferences_id = reference... - 05:54 PM EDIT Revision 48468c67 (cdm-dataportal): ref #8440 specimen accession numbers link to specimen page
- 05:53 PM EDIT feature request #8403 (In Progress): name page: show types specimens as expandable derivate tree
- code need to be cleaned up
- 05:52 PM EDIT feature request #8403 (Rejected): name page: show types specimens as expandable derivate tree
- This feature request has been rejected in favor of #8440
- 05:51 PM EDIT bug #8440 (Closed): specimen accession numbers link to specimen page
- The specimen accession numbers, aka specimen labels, should be clickable links to the specimen page.
This is neede... - 05:47 PM EDIT Revision 7449720a (cdmlib): ref #8365 adding combination of collection code and unit number as specimenLabel to DerivedUnitFacade
- 05:29 PM EDIT task #8437: ITermTreeService provides a list method which supports filtering by TermTree.termType,
- So we definetely should write tests before closing.
- 05:27 PM EDIT task #8437 (Feedback): ITermTreeService provides a list method which supports filtering by TermTree.termType,
- Have you tested with termType = Character which is a subtype for Feature. I don't think the "Restrictions" implementa...
- 11:19 AM EDIT task #8437 (Resolved): ITermTreeService provides a list method which supports filtering by TermTree.termType,
- please can you review my changes?
- 05:11 PM EDIT feature request #8439 (New): Improve Layout of Registration in Name page and Search page
- Improve Layout of Registration in Name page and Search page.
Example http://phycobank.org/100628
: ref #8422 dependency handling finalized in PolytomousKeyGenerator
- 04:42 PM EDIT Revision 54b77a28 (cdmlib): minor
- 04:42 PM EDIT Revision 73f1250e (cdmlib): ref #8422 add dependencies to PolytomousKeyGenerator
- 04:42 PM EDIT Revision 710cb94e (cdmlib): ref #8422 fix reuse of feature if it shouldn't
- 12:01 PM EDIT task #8438 (Closed): remove featureTree/* web services in August 2021 if they are unused
- If the featureTree/* web services are no longer used since 2 years we can safely remove them.
Check the cdm-server... - 11:56 AM EDIT task #8434 (Closed): Change FeatureTree contollers to TermTree controllers
- 11:55 AM EDIT task #8166 (Resolved): Adapt dataportal to term structure changes
- check taxon profile settings in a couple of test portals:
* Cichorieae
* Corvidea
* Palmweb
* Cyprus - 11:54 AM EDIT Revision 9725f08e (cdm-dataportal): ref #8166 using ternmType filter to restrict to feature trees only
- 11:51 AM EDIT Revision fc3e5e6e (taxeditor): ref #8385: fixes in preferences - continue
- 11:48 AM EDIT Revision 515bfcff (cdmlib): ref #8385: fix TermOrder Enum
- 11:18 AM EDIT task #8436 (Resolved): featureTree/* services should filter the termTrees by the TermType Feature
- Applied in changeset commit:cdmlib|0f5323457637b6f2214287eb3101c7db121540f5.
- 11:18 AM EDIT Revision 0f532345 (cdmlib): fix #8436 termTree/* services with termType filter and featureTree/* services restricted to feature trees only
- 11:18 AM EDIT Revision 2ef4c225 (cdmlib): ref #8437 using the listByRestriction method in favour of a new untested dao method & implementing page method in ITermTreeService
- 10:48 AM EDIT Revision c2a446b0 (taxeditor): ref #8385: fixes in preferences - getDefaults() for all pages
08/01/2019
- 09:49 PM EDIT Revision 14987030 (cdmlib): ref #8422 fix leaf handling and simplify and complete tests
- 09:49 PM EDIT Revision a9256c91 (cdmlib): ref #8422 handle single value branches better
- 09:49 PM EDIT Revision feedd788 (cdmlib): cleanup
- 09:49 PM EDIT Revision aabca655 (cdmlib): ref #8422 change sort order for multi-taxon or multi-state branches
- 06:01 PM EDIT Revision 8cf6974b (cdmlib): ref #8434 removing deprecated featureNode/* web service mapping as this was never used since one year
- 05:58 PM EDIT Revision 9dddc68a (cdm-dataportal): ref #8166 adapting dataportal to TermTree novelties: using new term tree controller endpoints
- 03:00 PM EDIT Revision 5420e50d (cdmlib): ref #8422 some fixes for merging in PolytomousKeyGenerator
- 03:00 PM EDIT Revision b820a890 (cdmlib): ref #8437 first implementation for listBy termType for TermTreeService, not yet tested
- 03:00 PM EDIT Revision 5f16d935 (cdmlib): minor
- 03:00 PM EDIT Revision e0d15cb3 (cdmlib): minor toString changes
- 03:00 PM EDIT Revision 0174fe98 (cdmlib): ref #8422 adding test for merge mode
- 03:00 PM EDIT Revision 3996640f (cdmlib): minor
- 03:00 PM EDIT Revision b3cf04bc (cdmlib): rename dependencies
- 02:59 PM EDIT task #8437 (In Progress): ITermTreeService provides a list method which supports filtering by TermTree.termType,
- implemented but no tests yet, but maybe you can integrate into controller already
- 12:26 PM EDIT task #8437 (Resolved): ITermTreeService provides a list method which supports filtering by TermTree.termType,
- e.g.:
~~~java
public List<TermTree> list(TermType termType, Integer limit, Integer start, List<OrderHint> orde... - 01:23 PM EDIT bug #8385 (In Progress): Open issues in DB preferences
- 12:23 PM EDIT task #8436 (Closed): featureTree/* services should filter the termTrees by the TermType Feature
- Die featureTree/* Service-Endpunkte sollte selbe Verhalten anzubieten wie zuvor (#8434). In diesem Fall sollte hinter...
- 12:18 PM EDIT Revision b2205142 (cdmlib): ref #7597 Adapt to service changes and rename long running method
- 12:07 PM EDIT Revision 6ad4013c (cdmlib): fix typo
- 11:58 AM EDIT Revision aa3118b2 (cdmlib): ref #8435: differ between info and debug level
- 11:36 AM EDIT task #8435 (New): Reduce logging amount of exports and other long running tasks
- One single CDMLight export of the euromed database produces 49173 lines of logging like :
~~~
[euromed] 2019-07-3... - 10:51 AM EDIT Revision cad668ac (cdmlib): ref #8431: adaptions to show the export name in progress monitor
- 10:50 AM EDIT Revision 23157c56 (taxeditor): ref #8431: improve progress monitor/bar in editor for import/export
- 10:50 AM EDIT Revision 25a3ce1e (taxeditor): ref #8385: fixes for preferences
- 10:03 AM EDIT Revision 225e3aa7 (taxeditor): ref #7597 Adapt to service changes
- 10:02 AM EDIT Revision ed6a16ee (taxeditor): ref #7597 Remove taxon tree aggregation command and handler
- 10:01 AM EDIT Revision 85ba00f8 (taxeditor): add FIXME message
- 10:01 AM EDIT Revision 78aa2ad6 (cdmlib): ref #7597 Aggregation for each taxon based on associated specimens
- 09:08 AM EDIT feature request #7510 (Worksforme): Allow entering aggregated/statistical data for single specimens in character matrix
- Entering statistical information is possible if the Feature/Character is defined to allow that.
The data is then e... - 09:03 AM EDIT Revision 104ee19a (cdmlib): minor
- 09:03 AM EDIT Revision 4c0f844f (cdmlib): ref #8422 fix scoring for categoricalData
- 09:03 AM EDIT Revision 50e52e0f (cdmlib): minor
- 09:03 AM EDIT Revision ae7c9821 (cdmlib): ref #8422 let PKGenerator only work on TaxonDescriptions for now
- 08:49 AM EDIT Revision 50369001 (cdmlib): ref #8434 turing FeatureTree contollers into TermTree controllers
- 08:28 AM EDIT task #8434 (Closed): Change FeatureTree contollers to TermTree controllers
- The `FeatureTree` contollers need to be adapted to the changes which have been applied for #6794:
* rename Featur...
07/31/2019
- 07:09 PM EDIT Revision 062686a1 (cdm-dataportal): adding missing quotes which broke the profile image
- 06:54 PM EDIT Revision 34852f2d (cdm-dataportal): ref #8415 using accepted name uuid to get the types if no other taxa are in the homotypical group
- 06:43 PM EDIT Revision 02e8615c (cdm-dataportal): refactoring cdm_dataportal_taxon_page_specimens() to compose function
- 05:05 PM EDIT Revision 93040e10 (taxeditor): add polytomous key generation to character matrix (experimental)
- 04:03 PM EDIT feature request #8432 (In Progress): Improve "default" feature tree handling
- 12:58 PM EDIT feature request #8432 (In Progress): Improve "default" feature tree handling
- Definitions:
* **default feature tree** = term tree of type feature which holds all features in the database in a... - 03:41 PM EDIT feature request #8433 (Duplicate): Disallow user names with whitespace
- Allow only certain letter like [a-z][A-Z]_. Other usernames are errorprone.
Same for group names. - 03:20 PM EDIT bug #6523: Correct display of misspellings in synonymy
- Walter:
Also, erstmal, „orthographic variant“ gibt es anscheinend nur in der Botanik s.l.
Folgende Aussagen im C... - 03:06 PM EDIT task #8405 (Rejected): Adapt cdm-vaadin to term structure changes
- I deed, there is nothing to do about this in the cdm-vaadin project.
- 03:01 PM EDIT task #8406 (Resolved): specimens and occurrence code cleaning and harmonization
- Hi Katja,
can you please have a look if everything is as it was intended? - 02:58 PM EDIT bug #8395 (Closed): NullPointerException (NPE) in NameCatalogueController
- This is fully solved.
- 02:57 PM EDIT task #8414 (In Progress): occurrence controller code cleaning and harmonization
- 02:53 PM EDIT Revision 3d14fdcf (cdm-dataportal): ref #8415 avoiding uninitialized variable
- 02:40 PM EDIT Revision a41f5463 (cdm-dataportal): Merge tag '5.8.2' into develop
- tagging hotfix 5.8.2
- 02:40 PM EDIT Revision 4050c450 (cdm-dataportal): Merge branch 'hotfix/5.8.2'
- 02:40 PM EDIT Revision a77b6a1d (cdm-dataportal): fix #8430 fixing bbox transformation from data layer to base layer projection
- 02:32 PM EDIT bug #8426 (Closed): IndexOutOfBoundsException during serialization of RegistrationWorkingSet
- findFirst() will returns an Optional describing the first element of this stream, or an empty Optional if the stream ...
- 02:15 PM EDIT Revision af8e4c4e (cdmlib): ref #8414 adding cycle detection to loadFieldUnitDTO()
- 01:56 PM EDIT bug #8431 (In Progress): missing status bar for cdm light export
- 10:23 AM EDIT bug #8431 (In Progress): missing status bar for cdm light export
- mail from AM:
beim Export von E+M via CDM light wird bei mir seltsamer Weise keine Statusbar angezeigt, die Prozen... - 10:33 AM EDIT feature request #8299 (Resolved): add typification column to scientific name and homotypical group in cdm light
- Applied in changeset commit:cdmlib|e05bda1e6ca35dfb77dba833f34203525024a9cb.
- 10:32 AM EDIT Revision e05bda1e (cdmlib): fix #8299: add typification columns to scientific name table of cdm light
- 10:27 AM EDIT feature request #8344 (Resolved): Cdm light export: add dummy line in simple facts table
- this is already implemented.
- 10:26 AM EDIT feature request #8322 (Resolved): add sortindex to cdm light export
- yes it is already implemented, please review
- 09:04 AM EDIT bug #8430: maps zoom to wrong bbox with some layers
- This should now be fixed for all situations. Could you please take a second look?
- 08:45 AM EDIT bug #8430 (Resolved): maps zoom to wrong bbox with some layers
- Applied in changeset commit:cdm-dataportal|779840f48519040a2ab59db5b7881ef0a265d6a8.
- 08:43 AM EDIT bug #8430 (Closed): maps zoom to wrong bbox with some layers
- This problem has been fixed for `POINT` maps (#8347) but is not yet fully solved for `AREA` maps.
`openlayers_map.... - 08:45 AM EDIT Revision 779840f4 (cdm-dataportal): fix #8430 fixing bbox transformation from data layer to base layer projection
07/30/2019
- 09:53 PM EDIT bug #8429: Rename DeterminationEvent_Reference.setOfReferences_id
- The reason is that the references are called setOfReferences while the getter is getReferences.
Simplest solution:... - 05:25 PM EDIT bug #8429 (Closed): Rename DeterminationEvent_Reference.setOfReferences_id
- ~~~
[algaterra_new] 2019-07-30 15:49:23,008 INFO [qtp532445947-4997] [eu.etaxonomy.cdm.remote.controller.BaseControl... - 09:43 PM EDIT bug #8426: IndexOutOfBoundsException during serialization of RegistrationWorkingSet
- isn't this very easy to fix? Therefore I put it to 5.9 (and also tried to fix in the meanwhile).
Open question: do... - 09:40 PM EDIT bug #8426 (Resolved): IndexOutOfBoundsException during serialization of RegistrationWorkingSet
- Applied in changeset commit:cdmlib|6b0f8cdfe1643a96638e02dbd924ffd0007785f8.
- 05:09 PM EDIT bug #8426 (Closed): IndexOutOfBoundsException during serialization of RegistrationWorkingSet
IndexOutOfBoundsException during serialization of RegistrationWorkingSet:
~~~
[flora-central-africa] 2019-07-...- 09:40 PM EDIT Revision ddaea59b (cdmlib): ref #8422 PolytomousKeyGenerator: improving sort order and fixing score for quantitative data, + further refactoring
- 09:37 PM EDIT Revision 6b0f8cdf (cdmlib): fix #8426 fix IOOB Exception in RegistrationWorkingSet serialization
- 05:19 PM EDIT bug #8428 (Closed): NPE in ClassificationServiceImpl.loadTreeBranchToTaxon()
~~~
[euromed] 2019-07-30 16:07:08,780 INFO [qtp532445947-5019] [eu.etaxonomy.cdm.remote.controller.ClassificationP...- 05:14 PM EDIT Revision 2d0650ce (cdmlib): ref #8422 refactoring PKGenerator+test and minor fixes
- 05:11 PM EDIT bug #8427 (Closed): LazyInitializationException in NameController.doGetTaggedFullTitle()
- found in production server log:
* /cichorieae/name/ddf9cc53-cdfc-45d5-98f9-1e5ef9a8e4df/taggedFullTitle
* /cichor... - 03:27 PM EDIT feature request #8403: name page: show types specimens as expandable derivate tree
- please see http://test.e-taxonomy.eu/dataportal/preview/phycobank/cdm_dataportal/name/f5048e6e-303a-41f6-933b-84c678e...
- 11:35 AM EDIT feature request #8403 (Resolved): name page: show types specimens as expandable derivate tree
- 03:16 PM EDIT task #8425 (Closed): FieldUnitDTO: remove taxonRelatedDerivedUnits
- FieldUnitDTO has the field `taxonRelatedDerivedUnits`. This can be removed, this is a relict of a first approach to ...
- 03:12 PM EDIT task #8424 (New): evaluate publish flags in the full derivative path
- eu.etaxonomy.cdm.remote.controller.OccurrenceController.doGetOccurencesDTO(@PathVariable(value="uuid") UUID uuid, Htt...
- 03:01 PM EDIT bug #8423 (Closed): OccurrenceServiceImpl.findFieldUnitDTO() fails to merge derivation paths when a FieldUnit has two derivatives
- OccurrenceServiceImpl.findFieldUnitDTO(DerivateDTO derivedUnitDTO, Collection<FieldUnitDTO> fieldUnits, HashMap<UUID,...
- 02:53 PM EDIT bug #8422 (In Progress): Make PolytomousKeyGenerator work (correctly)
- 02:53 PM EDIT bug #8422 (Closed): Make PolytomousKeyGenerator work (correctly)
- 02:25 PM EDIT task #8406 (In Progress): specimens and occurrence code cleaning and harmonization
- 02:25 PM EDIT Revision a0be8d7e (cdm-dataportal): ref #8406 dapting portal to renamed controller endpoint: taxon/{uuid}/specimensOrObservationDTOs --> taxon/{uuid}/fieldUnitDTOs
- 02:22 PM EDIT Revision 2e09903a (cdmlib): ref #8414 renaming taxon/{uuid}/specimensOrObservationDTOs to taxon/{uuid}/fieldUnitDTOs
- 02:15 PM EDIT bug #8385: Open issues in DB preferences
- Passing the ticket back to Katja. We may have a look on it together, though.
- 02:14 PM EDIT feature request #8238: Allow interoperability between term trees
- Does not have to be solved in this milestone -> move to 5.10
- 01:52 PM EDIT feature request #8415 (Closed): use /portal/name/{uuuid}/typeDesignationsInHomotypicalGroup to speed up type designation retrieval
- 01:52 PM EDIT feature request #8415 (Resolved): use /portal/name/{uuuid}/typeDesignationsInHomotypicalGroup to speed up type designation retrieval
- Applied in changeset commit:cdm-dataportal|dfbc27b033a2eda86d74b57a4d14189f7d6e5cd0.
- 01:52 PM EDIT Revision dfbc27b0 (cdm-dataportal): fix #8415 using /portal/name/{uuuid}/typeDesignationsInHomotypicalGroup service to speed up the type designation display
- 01:48 PM EDIT feature request #8390 (Closed): implement /portal/name/{uuuid}/typeDesignationsInHomotypicalGroup
- 01:46 PM EDIT Revision 7dde6846 (cdmlib): ref #8390 uncommenting typeDesignationsInHomotypicalGroup service endpoints
- 01:07 PM EDIT task #8414: occurrence controller code cleaning and harmonization
- http://test.e-taxonomy.eu/dataportal/preview/algaterra-new/cdm_dataportal/taxon/c3350592-db9d-44cb-80ed-29bfb685e3a0/...
- 12:09 PM EDIT Revision aa8cf7e6 (cdmlib): first implementation of /portal/name/{uuuid}/typeDesignationsInHomotypicalGroup
- 11:35 AM EDIT bug #8421 (Rejected): icons in compose_specimen_table_top_down() are not visible
- in `compose_specimen_table_top_down()` font awesome icons are added to the render array, but these are not getting di...
- 11:28 AM EDIT task #8420 (Closed): improve admin settings for specimens representations
- * The kind of representation of specimens lists needs to be selectable via a set of radio buttons.
* should the sett... - 11:25 AM EDIT task #8419 (In Progress): Harmonization of the different specimen representations
- **There are different kinds of "views" for specimens lists**
* some of them provide a pager others do not
* do op... - 11:21 AM EDIT task #8418 (Closed): specimens and occurrence links must not have a target=_blank attribute
- 11:01 AM EDIT task #8418 (Closed): specimens and occurrence links must not have a target=_blank attribute
- Even is this was frequently requested by users using the target attribute is in general considered an UX anti-pattern...
- 11:02 AM EDIT Revision cea59762 (cdm-dataportal): ref #8418 removing all target=_blank attributes from specimen representations
- 10:18 AM EDIT Revision f7a4716c (taxeditor): ref # 8135 Make textual type designation element non-experimental
- 10:14 AM EDIT bug #8417 (New): LazyInitializationException in TermDTO for media
- Im TaxonRelationshipsDTOTest, der ein einfacher UnitTest ist kommt es zu Problemen wegen der media die neuerdings an ...
- 09:20 AM EDIT feature request #8412 (In Progress): Remaining issues for cdm light export (II)
- 08:58 AM EDIT Revision ae177dac (cdm-dataportal): ref #8403 types specimens as expandable derivate tree in name page finally working
- 08:57 AM EDIT Revision 4c158e4e (cdm-dataportal): ref #8414 adapting portal to modified service mapping
- 08:44 AM EDIT Revision d2cbce25 (cdmlib): ref #8414 refactoring OccurrenceController:
- - method to load a single FieldUnitDTO
- adding all intermediate derivatives to the FieldUnitDTO
- renaming servi...
07/29/2019
- 03:14 PM EDIT Revision df79024a (taxeditor): Adapt to model change - (DescriptiveDataSet TermTree<Feature>)
- 02:31 PM EDIT Revision f79b990b (cdmlib): Remove wildcard from generics
- 02:21 PM EDIT Revision 10858926 (cdm-dataportal): using the /portal/name/{uuuid}/typeDesignationsInHomotypicalGroup webservice to avoid fetching for each name in the group
- 02:20 PM EDIT Revision 961319fe (cdm-dataportal): ref #8406 clenaing and harmonization of the specimen related code in the dataportal
- 02:13 PM EDIT bug #8416 (Worksforme): Array to string conversion problem in render array produced for specimen page
- At least the specimen page for (B B GT 0024094) in phycobank ( http://edit.test/d7/phycobank/cdm_dataportal/occurrenc...
- 02:06 PM EDIT Revision 70b053e4 (cdmlib): ref #8406 cleaning up occurrence controller code
- 02:04 PM EDIT feature request #8415 (Closed): use /portal/name/{uuuid}/typeDesignationsInHomotypicalGroup to speed up type designation retrieval
- copied from #6380.
This webservice should be used to speed up `type_designations_for_synonymy_group($synonymy_grou... - 02:02 PM EDIT Revision dd49afb6 (cdmlib-apps): ref #6794 TermTreeNode-> TermNode in cdmlib-apps
- 01:59 PM EDIT task #8414 (Closed): occurrence controller code cleaning and harmonization
- eu.etaxonomy.cdm.remote.controller.OccurrenceController.doGetOccurencesDTO(@PathVariable(value="uuid") UUID uuid, Htt...
- 12:36 PM EDIT feature request #8413 (New): Abcd import with file containing list of unit ids
- For a bulk import it is necessary to have the possibility to import all specimen of a list of unit IDs
- 10:36 AM EDIT bug #6627 (Resolved): Remaining cdm light issues
- created a new "remaining issues" ticket and close this one
- 10:35 AM EDIT feature request #8412 (In Progress): Remaining issues for cdm light export (II)
- * Instance name and instance ID
* Discuss whether we should handle the citation facts separate to the other simple... - 10:29 AM EDIT feature request #8411 (New): additional requirements for export/import path selection
- mail from w.b.
Hallo,
ein nice to have, wohl vor allem für Leute die nicht ständig in einer Datenbank arbeiten, ...
07/27/2019
- 01:22 AM EDIT Revision 3fcd7421 (cdmlib): fix PolytomousKeyGenerator (not yet ready)
- 01:22 AM EDIT Revision 90bce0d8 (cdmlib): add some factory methods
- 01:21 AM EDIT Revision 1ed092db (cdmlib): allow handle multiTaxon nodes in polytomousKey.print
- 01:20 AM EDIT Revision 8c7285ac (cdmlib): fix asList(Recursive) methods
- 01:19 AM EDIT Revision dc572c3e (cdmlib): adapt DescriptiveDataSet to allow also descriptive systems with features not only characters
- 01:18 AM EDIT Revision 21fbf707 (cdmlib): cleanup
07/26/2019
- 05:53 PM EDIT feature request #8410 (Closed): Add nomenclatural code edition to ruleConsidered in TaxEditor
- for nomenclatural status, name relation (and hybrid relation once it exists).
Make the field only available if rul... - 03:14 PM EDIT feature request #8334 (Resolved): Move sources for type designations to details view
- 03:14 PM EDIT Revision 0fcac92e (taxeditor): ref #8334 Move sources for type designations to details view
- 03:00 PM EDIT Revision 2ac060fb (taxeditor): ref #8334 code cleanup
- 02:51 PM EDIT feature request #8135 (Resolved): Implement verbatim type information in TaxEditor
- 02:50 PM EDIT Revision 577d6cf2 (taxeditor): ref #8135 Decrease text field size
- 02:47 PM EDIT Revision 6fa52600 (taxeditor): ref #8135 Remove designation checkbox from super class
- 02:38 PM EDIT bug #8365: DerivedUnitFacadeCacheStrategy should remove collection codes from accession numbers
- Andreas Müller wrote:
> To me there seems to be a misunderstanding. My understanding of #8365#note-8 is that is fine... - 02:19 PM EDIT bug #8365: DerivedUnitFacadeCacheStrategy should remove collection codes from accession numbers
- One last question: is the original task of the ticket to deduplicate collection code if necessary now implemented in ...
- 02:13 PM EDIT bug #8365: DerivedUnitFacadeCacheStrategy should remove collection codes from accession numbers
- To me there seems to be a misunderstanding. My understanding of #8365#note-8 is that is fine to have brackets for typ...
- 01:58 PM EDIT bug #8365: DerivedUnitFacadeCacheStrategy should remove collection codes from accession numbers
- Andreas Kohlbecker wrote:
> Users frequently enter the collection code with the accession number which can cause to ... - 01:50 PM EDIT feature request #8180 (In Progress): Add property term "Presence/Absence" to CDM default terms
- As the current solution works for additivity maybe we should postpone creating the two new terms until the above ques...
- 01:46 PM EDIT feature request #8180: Add property term "Presence/Absence" to CDM default terms
- Query for above request:
~~~sql
SELECT REPLACE (uri, 'https://terms.tdwg.org/wiki/ft:','')
FROM DefinedTermBase... - 01:31 PM EDIT feature request #8180: Add property term "Presence/Absence" to CDM default terms
- Hallo,
ich sehe gerade das folgende Terme doppelt vorkommen in der Ontologie:
"REPLACE (uri, 'https://terms.tdw... - 01:00 PM EDIT Revision 78c76c38 (taxeditor): ref #8238 Remove too specific generics from TermTree and TermNode
- 12:28 PM EDIT Revision 607b4f94 (cdmlib): add test to cdmlib-cache pom
- 11:35 AM EDIT Revision 09092e90 (taxeditor): cleanup
- 11:07 AM EDIT task #8166: Adapt dataportal to term structure changes
- Yes, we should at least do a string search for "FeatureTree". Also a string search on "FeatureNode".
- 09:27 AM EDIT task #8166 (New): Adapt dataportal to term structure changes
- I am reopening this issue since the data portal code even if being fully functional might need to be adapted to the ...
- 08:53 AM EDIT task #8166 (Worksforme): Adapt dataportal to term structure changes
- Andreas Müller wrote:
> Are there any changes needed? Currently it looks like most things work (except maybe for the... - 11:06 AM EDIT feature request #8238 (In Progress): Allow interoperability between term trees
- 11:06 AM EDIT Revision 97654d95 (cdmlib): ref #8238 Allow adding term subtypes to TermRelationBases
- 10:57 AM EDIT feature request #8409 (Closed): add nomenclatural code select to NameRelationField
- see #8398 for details
- 10:55 AM EDIT feature request #8408 (Closed): add nomenclatural code select to NomenclaturalStatusRow
- see #8398 for details
- 10:00 AM EDIT Revision 9b5133b8 (taxeditor): ref #8135 re-enable textual type designation
- 09:50 AM EDIT Revision 5405bf47 (cdmlib): fix problem in CacheLoader
- 09:02 AM EDIT Revision a5a2cb3d (cdmlib): Revert "Revert "update cached model for schema version 5.8""
- This reverts commit 6fbe8628082d5f62797062febd0921d93708c275.
- 09:01 AM EDIT Revision d6e586ac (taxeditor): Revert "Revert "update test H2 database to schema version 5.8""
- This reverts commit 8b0979c778511b794d7873eda4899db15c8232f3.
- 08:52 AM EDIT Revision 8b0979c7 (taxeditor): Revert "update test H2 database to schema version 5.8"
- This reverts commit 50cdece7f361217c57f926555acc006a73d5e151.
- 07:55 AM EDIT Revision 6fbe8628 (cdmlib): Revert "update cached model for schema version 5.8"
- This reverts commit 2be44701da8b296a6ac1008376bdda834b2ffd65.
- 01:55 AM EDIT Revision be95b04a (cdmlib): minor
- 01:46 AM EDIT Revision 5bb3ff87 (cdmlib): cleanup
- 01:28 AM EDIT Revision 21410a84 (cdmlib): cleanup
- 01:05 AM EDIT Revision 45f16cd4 (cdmlib): minor
- 01:00 AM EDIT Revision 5b2a2319 (cdmlib): minor
- 12:56 AM EDIT Revision a5d61a3f (cdmlib): minor
- 12:46 AM EDIT Revision f2c629ce (cdmlib): minor
- 12:29 AM EDIT Revision ead8847b (cdmlib): minor
- 12:11 AM EDIT Revision c0951a03 (cdmlib): cleanup TermTree.clone
- 12:11 AM EDIT Revision a08b6fbc (cdmlib): cleanup, javadoc and test for notnull check for termtype in TermTree
07/25/2019
- 11:13 PM EDIT task #8405: Adapt cdm-vaadin to term structure changes
- Are there any changes needed? Vaadin compiles and does not really make use of TermTree(former FeatureTree) so it is m...
- 10:16 AM EDIT task #8405 (Rejected): Adapt cdm-vaadin to term structure changes
- the vaadin editor needs to be adapted to the changes applied in the context of #6794
- 11:10 PM EDIT task #8166: Adapt dataportal to term structure changes
- Are there any changes needed? Currently it looks like most things work (except maybe for the Specimen page, is this c...
- 05:42 PM EDIT Revision 845a6a70 (taxeditor): ref #6794 Replace FeatureTreeService with TermTreeService
- 04:20 PM EDIT Revision 53c7a226 (cdmlib): ref #6794 rename other TermTree.NewInstance methods and set old version to deprecated
- 04:08 PM EDIT Revision 2617ad64 (cdmlib): update javadoc for TermTree
- (cherry picked from commit 14b218305dfe9023a44d8c7da6e33715a6ef4ba6)
- 04:08 PM EDIT Revision 06de8afc (cdmlib): ref #6794 rename TermTree.NewInstance and set old version to deprecated
- (cherry picked from commit 08b758e2bfba66c82fbc5a636e455edcccb9fa11)
- 03:22 PM EDIT Revision 7a26e61a (cdmlib): ref #8407
- 03:21 PM EDIT Revision 98b0b483 (cdmlib): remove createDefaultFeatureTree from ITermTreeService
- 03:20 PM EDIT Revision 549e8cc5 (cdmlib): ref #6794 rename IFeatureTreeDao in ITermTreeDao
- 02:54 PM EDIT task #8336 (Duplicate): Unignore FeatureTest
- 02:50 PM EDIT bug #8407 (New): Fix "FeatureTest"
- Fix "FeatureTest" (or may now TermTreeTest) which checks the correkt behavior for exporting (and importing?) TermTree...
- 01:45 PM EDIT Revision 160f1cbd (taxeditor): ref #6794 Fix compile error
- 01:16 PM EDIT task #8406 (Closed): specimens and occurrence code cleaning and harmonization
- ## cdmlib-remote
issues copied to #8414
## data portal
* There are different kinds of "views" on specimens l... - 12:51 PM EDIT Revision ca7468b6 (cdm-dataportal): ref #8403 moving compose_specimens_table_bottom_up() to occurences.inc and renaming parameter in compose_specimen_array()
- 12:48 PM EDIT Revision 84849c31 (cdm-dataportal): ref #8403 extracting method compose_specimens_table_bottom_up()
- 12:27 PM EDIT Revision 8b7ea5be (taxeditor): ref #8281 adapt TaxEditor test data to doubtful flag in TaxonNode
- 12:25 PM EDIT Revision 43613a08 (taxeditor): ref #7334 adapt TaxEditor tests to new schema (delete partial and proparte)
- 11:15 AM EDIT Revision 68467d82 (cdm-dataportal): name type designation status bold - adapting tests
- 11:15 AM EDIT Revision 6cf1445b (cdm-vaadin): adapt vaadin tests to new schema version
- 11:10 AM EDIT Revision ad0a82ca (cdm-vaadin): adapt vaadin tests to new schema version
- 11:04 AM EDIT Revision 1f00087f (cdm-dataportal): name type designation status bold
- 11:03 AM EDIT Revision c8e1c376 (cdm-vaadin): adapt vaadin tests to new schema version
- 10:53 AM EDIT Revision 0f8bf4e9 (cdm-vaadin): update vaadin test H2 to new schema version 5.8
- 10:25 AM EDIT Revision 2d6c8502 (cdmlib): commenting doGetTypeDesignationsInHomotypicalGroup() methods which have been comitted too early
- 10:17 AM EDIT Revision 2be44701 (cdmlib): update cached model for schema version 5.8
- 10:17 AM EDIT Revision 049213b6 (cdmlib): cleanup
- 10:13 AM EDIT bug #8395 (Resolved): NullPointerException (NPE) in NameCatalogueController
- Applied in changeset commit:cdmlib|dd4347b628d5737e2682c8d95fcb0e1aff9e7ad7.
- 10:13 AM EDIT Revision 10d502dc (cdmlib): ref #8394 adding nameUUIDs to NameCatalogueController responses
- 10:13 AM EDIT Revision 9c5bef97 (cdmlib): ref #8394 adding nameUuid to NameCatalogueController responses
- 10:13 AM EDIT Revision dd4347b6 (cdmlib): fix #8395 avoiding NPE in NameCatalogueController.getDatasetIdName()
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