Andreas Müller's activity
From 07/21/2019 to 08/19/2019
08/19/2019
- 04:48 PM EDIT Revision 128dc8b1 (cdmlib-apps): syntax for collective species uuid and some other PESITransformer fixes
- 04:47 PM EDIT Revision bb184a5d (cdmlib): syntax for collective species uuid
- 04:22 PM EDIT Revision a85f12b2 (cdmlib): minor
- 04:21 PM EDIT Revision 69f5b141 (cdmlib): some minor adaptations to CdmLightExport and CsvNameExport
- 04:21 PM EDIT Revision e1aea500 (cdmlib): minor
- 04:15 PM EDIT Revision 491e4eea (cdmlib-apps): ref #8404 add steplist to BgbmInstancesUpdater code
- 04:12 PM EDIT Revision f2f47cbd (cdmlib-apps): ref #8479 First version of cdm2cdm import for FauEu (classes created, no real implementation yet)
- 04:11 PM EDIT task #8479 (In Progress): [PESI][FE] Cdm-2-Cdm import for FauEu
- Open issues:
* check if uuids are always kept for taxon nodes (sometimes addChild is used which probably creats co... - 04:09 PM EDIT Revision 9d685c8f (cdmlib-apps): ref 5448 latest changes to Geaessplanzenimport Excel
- 04:06 PM EDIT Revision c525794f (cdmlib-apps): fix to BerlinModelAreaImport. Not sure why this is needed only now
- 04:06 PM EDIT Revision 220dce9c (cdmlib-apps): last adaptation to E+M import (not needed anymore)
- 04:05 PM EDIT Revision ff763abe (cdmlib-apps): latest version of GreeceImageActivator
- 04:04 PM EDIT Revision bff0daf9 (cdmlib-apps): fix some compile errors in ERMS and FauEu
- 04:03 PM EDIT Revision 07de96ff (cdmlib-apps): minor
- 01:27 PM EDIT feature request #8304: Name page redirects to according taxon depending on query parameter
- Hi Andreas, I think we have discussed this issue sometime at phone. Do you remember the results? Are they somewhere i...
- 12:33 PM EDIT Revision de4de718 (cdmlib-apps): ref #6794 , ref #7099 adapt E+M activator to terms package structure
- 10:16 AM EDIT feature request #3472: Update name in source data when changing an accepted taxon into a synonym
- Ok, in generall this probably makes sense. Maybe I just wasn't used to it yet.
However, if this is the expected beha...
08/17/2019
- 02:10 AM EDIT Revision 54627755 (cdmlib-apps): remove RoteListeDbTaxonImportValidator
- 02:10 AM EDIT Revision 165e1209 (cdmlib-apps): ref #6794 , ref #7099 adapt app-import, pesi, eflora to modelchanges
- 01:02 AM EDIT Revision b5de83c2 (cdmlib): ref #8432 adapt javadoc
- 12:57 AM EDIT Revision 08f5d256 (cdmlib): ref #8432 adapt TermTreeDaoImpl.load such that default feature tree is only created and returned if the default feature tree uuid is passed to it
- 12:54 AM EDIT Revision 55e16d38 (cdmlib): minor
08/16/2019
- 10:36 PM EDIT bug #8385: Open issues in DB preferences
- ~~Restore button does not yet work for Distribution Editor status and area selection preferences~~
this is fixed - 10:33 PM EDIT bug #8385: Open issues in DB preferences
- ~~Distribution editor status selection: changes are not visible in Preferences view after reopening the preferences v...
- 10:27 PM EDIT bug #8385: Open issues in DB preferences
- ~~name.nomenclaturalStatus can not be removed by Reset Default~~
this is fixed. - 10:25 PM EDIT bug #8385: Open issues in DB preferences
- ~~some preferences are not deleted for NameDetailsView => deselect all and reopen preferences => 3 prefs stay selecte...
- 10:21 PM EDIT bug #8385: Open issues in DB preferences
- ~~ABCD import is now implemented on both sides, but "allow override" does not yet exist for "ABCD import provider"~~
... - 10:19 PM EDIT bug #8385: Open issues in DB preferences
- Andreas Müller wrote:
> When opening Peferences - Distribution Editor for the first time the drop downs for some fie... - 10:12 PM EDIT bug #8385: Open issues in DB preferences
- >Name details view can not be set to "default" (always chooses enabled after reopening)
~~Now it always sets it ba... - 10:09 PM EDIT bug #8385 (Feedback): Open issues in DB preferences
- ~~When opening Peferences - Distribution Editor for the first time the drop downs for some fields were completely emp...
- 09:55 PM EDIT feature request #3472: Update name in source data when changing an accepted taxon into a synonym
- Andreas Müller wrote:
> Please open a new ticket for the final implementation with a new wizard including the questi... - 09:51 PM EDIT feature request #3472: Update name in source data when changing an accepted taxon into a synonym
- The labels of the 2 menus should be equal except for the addition about the Name in Source. Is there a reason why you...
- 09:44 PM EDIT feature request #3472: Update name in source data when changing an accepted taxon into a synonym
- Please open a new ticket for the final implementation with a new wizard including the question if the name in sources...
- 09:38 PM EDIT feature request #3472: Update name in source data when changing an accepted taxon into a synonym
- The method with setting the name should be moved down in menu
- 09:37 PM EDIT feature request #3472 (Feedback): Update name in source data when changing an accepted taxon into a synonym
- Currently both methods do end in an unexpected state. After running the operation the old taxon is dirty (and unsaved...
- 09:24 PM EDIT bug #8422 (Closed): Make PolytomousKeyGenerator work (correctly)
- I close this ticket as there is a follow up ticket.
- 09:22 PM EDIT feature request #8299 (Feedback): add typification column to scientific name and homotypical group in cdm light
- Testing is time consuming for me. Please ask Walter if it is as expected.
- 09:20 PM EDIT feature request #8334 (Closed): Move sources for type designations to details view
- 09:17 PM EDIT bug #8444 (Closed): Show warning if misapplied names / pro parte synonyms are used more then once
- Hmm, now the warning is also shown if the misapplication is referenced e.g. by an identification key which is not nec...
- 09:05 PM EDIT feature request #8447: Adapt setPublishForSubtree to new parameters for pro parte, misapplications and hybrids
- "Pro Parte Synonyme" as pro parte is latin and usually in small letters. However, I don't know if it is maybe better ...
- 09:01 PM EDIT feature request #8447: Adapt setPublishForSubtree to new parameters for pro parte, misapplications and hybrids
- I think we may move synonyms below taxa as they are the second biggest group. Misapplications and pro parte synonyms ...
- 08:59 PM EDIT feature request #8447: Adapt setPublishForSubtree to new parameters for pro parte, misapplications and hybrids
- Hybrids are not a set of independent taxa but more a filter on each group. So we should maybe move it down (directly ...
- 08:57 PM EDIT feature request #8447 (Feedback): Adapt setPublishForSubtree to new parameters for pro parte, misapplications and hybrids
- If only Misapplications and/or pro parte synonyms are selected the finish button is not enabled but should (at least ...
- 08:43 PM EDIT feature request #8282: Implement placementDoubtful in TaxEditor
- Also we should add the doubtful flag to the "Set flags" method in the taxon navigator right click menu.
- 12:24 PM EDIT feature request #8282 (Feedback): Implement placementDoubtful in TaxEditor
- The new field should be close to the taxon node information as it is from taxon node. Currently it is in the middle o...
- 08:03 PM EDIT Revision 96b27743 (cdmlib): ref #7957 add javadoc to description types
- 07:00 PM EDIT Revision 7e477034 (cdmlib): ref #8441 add tests for FeatureState loading and move some test data to terms package
- 06:27 PM EDIT Revision 73ef4c0b (cdmlib): ref #8441 fix mapping for FeatureState
- 04:33 PM EDIT Revision b02697a5 (cdmlib): minor
- 04:32 PM EDIT Revision 887eb4d0 (cdmlib): move term node DAOs to term package
- 03:35 PM EDIT Revision c34a11ca (taxeditor): ref #7957 adapt tests to DescriptionBase.types not null
- 03:33 PM EDIT Revision 06a2de9b (taxeditor): cleanup
- 03:22 PM EDIT feature request #8477 (Closed): Implement support for TermCollection.allowDuplicates in TaxEditor
- Since #6794 it is possible to distinguish term collections which include duplicates (e.g. structure trees which inclu...
- 03:09 PM EDIT feature request #8476 (Closed): Implement support for TermCollection.isFlat in TaxEditor
- Often term collections are meant to be a flat list or set without hierarchical dependencies. For these collections th...
- 02:58 PM EDIT bug #8465: Term nodes order in term trees is ignored in term tree editor
- In general the ordering seems to work now.
- 02:56 PM EDIT bug #8465 (Feedback): Term nodes order in term trees is ignored in term tree editor
- As Term nodes should be not always ordered anymore (TermCollection.orderRelevant flag) we could implement this alread...
- 02:45 PM EDIT feature request #8474 (Closed): Make TermCollection.orderRelevant usable for TermTrees
Dazu müsste es:
1. ~~editierbar sein~~
2. ~~Der TermTree müsste unterschiedlich sortiert angezeigt werden, je n...- 01:22 PM EDIT bug #8473 (New): Migrate from GrantedAuthoritiesImpl to CdmAuthority and Role
- First of all the handling of authorities needs to be migrated and tested to AuthorityBase (by AK). Once this is done ...
- 01:14 PM EDIT bug #4884 (Closed): Update Reference_AUD.refType to allow NULL
- I guess this works.
- 12:41 PM EDIT feature request #8472 (Closed): Transmission engine for distribution aggregation needs to be adapted to new DescriptionBase.types
- Currently it uses marker type "Computed" to mark the descriptions.
... also needs update script for existing descr... - 12:38 PM EDIT feature request #7957: Add types for taxon description (as EnumSet)
- This has been implemented now as an EnumSet for better performance.
Please review.
- 10:38 AM EDIT feature request #7957 (Resolved): Add types for taxon description (as EnumSet)
- Applied in changeset commit:cdmlib|1962891319edeb12380aa69994467f674a96ce96.
- 12:35 PM EDIT feature request #8471 (Closed): Computed descriptions should be disabled in TaxEditor
- Taxon descriptions being computed (DescriptionBase.types contains COMPUTED or AGGREGATED) should be disabled for edit...
- 12:16 PM EDIT feature request #8398: Add nomenclatural code edition to ruleConsidered
- As this was your (phycobank) requirement I give it to you for review.
- 12:15 PM EDIT feature request #8410: Add nomenclatural code edition to ruleConsidered in TaxEditor
- Maybe we can do this in 5.10 latest so it is close to the model change.
I think we should add it to configuration ... - 12:12 PM EDIT feature request #8404 (Closed): Add update step list within updaters
- Seems to work as expected and is very nice.
- 12:11 PM EDIT feature request #8442 (Closed): Add fields to handle external terms to DefinedTermBase or TermBase
- So I close this ticket.
- 12:10 PM EDIT feature request #8454: Only allow certain patterns as username and groupname
- This should be fixed. Who ever wants please review. I tested creating a new user and a group in TaxEditor. For both w...
- 12:04 PM EDIT feature request #8470 (Closed): Handle username constraints in user and group editing
- Since #8454 a regex exist for usernames and groupnames.
For new usernames and groups the TaxEditor should validat... - 11:47 AM EDIT feature request #8441: Add FeatureState class
- Please review.
Maybe there are issues with orphan removal handling. - 11:45 AM EDIT feature request #8441 (Resolved): Add FeatureState class
- This is implemented, old implementation still exists in parallel. Should be removed with next update script.
SDD I... - 11:41 AM EDIT feature request #8469 (In Progress): Open PolytomousKeyGenerator issues
- * ~~adapt dependency handling to new FeatureState handling~~
* in general improve the handling of dependencies, mayb... - 11:35 AM EDIT task #8468 (Closed): Remove old InapplicableIf tables
- 11:03 AM EDIT Revision 525deb12 (taxeditor): adapt test H2 to schema v5.8.2
- 11:02 AM EDIT Revision 34062138 (cdmlib): ref #7959 rename DescriptionState -> DescriptionType and fix bug for enum loading
- 10:48 AM EDIT Revision f922cb22 (cdmlib): adapt cached model to 5.8.2
- 10:43 AM EDIT Revision 7134ca41 (cdm-vaadin): adapt test H2 to schema v5.8.2
- 10:42 AM EDIT Revision f81da2cc (cdm-vaadin): minor
- 10:38 AM EDIT Revision eeafa6f5 (cdmlib): for the moment set TermCollection.orderRelevant default to true
- 10:36 AM EDIT Revision beb18173 (cdmlib): adapt TestModelUpdate to run for all 3 H2 DBs
- 10:34 AM EDIT Revision a0d6f613 (cdmlib): adapt test H2 to model changes v5.8.2
- 10:34 AM EDIT Revision 9276e073 (cdmlib): ref #7957 add not null to update script for DescriptionBase.types
- 10:10 AM EDIT Revision b1d5cef3 (cdmlib): Cleanup
- 10:10 AM EDIT Revision 20ffe9b7 (cdmlib): ref #7099 , ref #8464 some adaptions on constraints for CdmAuthority
- 10:10 AM EDIT Revision 19628913 (cdmlib): fix #7957 add types to DescriptionBase
- 10:10 AM EDIT Revision 49405267 (cdmlib): Use AccessType Field for Character class
- 10:10 AM EDIT Revision ec5f2748 (cdmlib): ref #8441 adapt testdata and SDDDocumentBuilder to FeatureState
- 10:10 AM EDIT Revision ddda469d (cdmlib): minor
- 10:10 AM EDIT Revision abe8cce6 (cdmlib): ref #8441 further implementation for FeatureState and inapplicableIf
- 10:10 AM EDIT Revision 4e36de56 (cdmlib): ref #8441 FeatureState classes added and TermNode adapted
08/15/2019
- 03:57 PM EDIT feature request #8464: Make AuthorityBases unique
- This seems to be more difficult then I thought.
In general hibernate allows the ,uniqueConstraints=@UniqueConstra... - 02:59 PM EDIT feature request #8441 (In Progress): Add FeatureState class
- 01:52 PM EDIT task #8466 (Closed): Delete FeatureTree tables
- FeatureTree has been moved to TermCollection. The old tables have not yet been deleted to have the chance to find pos...
- 12:19 PM EDIT bug #8465: Term nodes order in term trees is ignored in term tree editor
- So, if the flag is switched on, the tree should be ordered by tree order, otherwise alphabetically (or by any other c...
- 12:06 PM EDIT bug #8465: Term nodes order in term trees is ignored in term tree editor
- Note: The new TermCollection base class has a flag now called "orderRelevant". This should in future decide if the or...
08/14/2019
- 11:04 AM EDIT Revision 9f84cafb (cdmlib): Adapt uniqueness and notNull for some authority parameters
- 10:59 AM EDIT task #7099: Make CdmAuthority a persistable class
- forgot to implement uniqueness. Moved to #8464
- 10:41 AM EDIT task #7099 (Resolved): Make CdmAuthority a persistable class
- This is implemented for now. Old GrantedAuthorities still exist and are in use but we could easily switch to new ones...
- 10:56 AM EDIT feature request #8464 (New): Make AuthorityBases unique
- The old GrantedAuthorityImpl.authority was unique and NotNull. This was forgotten to implement when implementing CdmA...
- 10:51 AM EDIT feature request #8442 (Resolved): Add fields to handle external terms to DefinedTermBase or TermBase
- This should be fixed. Also added new field "importMethod" and extracted all data to an external embeddable class "Ext...
- 10:48 AM EDIT feature request #3972 (Closed): Strictly validate username to not null and not empty
- This should be fixed by fixing #8454
- 10:47 AM EDIT feature request #8454 (Resolved): Only allow certain patterns as username and groupname
- This should be solved now and seems to work. Still needs testing in TaxEditor and maybe other surroundings.
- 10:45 AM EDIT bug #8429 (Resolved): Rename DeterminationEvent_Reference.setOfReferences_id
- This is fixed now by renaming the parameter in model from setOfReferences to references.
Making it a set of sourc... - 10:45 AM EDIT feature request #8463 (New): Make DeterminationEvent.references sources
- Currently the link to Reference but they should link to Source. DeterminationEvent should probably become a Sourceabl...
08/13/2019
- 05:38 PM EDIT Revision 69944d4b (cdmlib): update model cache for schema version 5.8.1
- 05:02 PM EDIT Revision d9054fe5 (taxeditor): adapt TaxEditor to Schema changes v5.8.1
- 04:46 PM EDIT Revision d742db9a (cdmlib): ref #7099 preliminary removing initialization of authorities to avoid LIE in AuthenticationPresenterTest
- 04:24 PM EDIT Revision 8b58ece8 (cdm-vaadin): adapt Vaadin to model changes v5.8.1
- 03:16 PM EDIT Revision 0059f9df (taxeditor): adapt test H2 to schema v5.8.1
- 03:13 PM EDIT Revision cf816bf2 (cdmlib): adapt test H2 to schema v5.8.1
- 03:13 PM EDIT Revision 3f6ffa04 (cdmlib): adapt poms to correct handling of versions => move versions to parent pom
- 03:13 PM EDIT Revision 8d58f4b9 (cdmlib): ref #8454 fix UserAndGroupServiceImplTest
- 03:13 PM EDIT Revision 9bee6bd5 (cdmlib): ref #8442 fix some jaxb annotations
- 03:13 PM EDIT Revision d7b78aa0 (cdmlib): ref #8442 add externallyManaged to UserDefined classes for matching and merging
- 03:13 PM EDIT Revision c39b4bdb (cdmlib): minor
- 03:13 PM EDIT Revision 609086da (cdmlib): ref #8442 jaxb for externallyManaged
- 03:13 PM EDIT Revision 43f0e2a1 (cdmlib): ref #8442 , ref #8429 adapt test schemas to model changes
- 03:13 PM EDIT Revision dd017de5 (cdmlib): ref #8442 update script for externally managed, ref #8454 update script for username patterns
- 03:13 PM EDIT Revision 040eb2b6 (cdmlib): cleanup
- 03:13 PM EDIT Revision 8de7077d (cdmlib): add IRuleConsidered
- 03:13 PM EDIT Revision 7fd108f2 (cdmlib): ref #8442 add ExternallyManagedImport
- 03:13 PM EDIT Revision 816fdaa0 (cdmlib): ref #8442 add externallyManaged to DefinedTermBase and TermVocabulary and make ExternallyManaged an embeddable class
- 03:13 PM EDIT Revision 4f817727 (cdmlib): ref #8442 move AuthorityType to model.common
- 03:13 PM EDIT Revision 6c8124b2 (cdmlib): ref #7099 update script for CdmAuthority tables
- 03:13 PM EDIT Revision 7b733b2a (cdmlib): ref #8429 rename DeterminationEvent.setOfReferences to DeterminationEvent.references
- 03:13 PM EDIT Revision fbe7ab55 (cdmlib): adapt model version number
- 03:13 PM EDIT Revision 83615ec3 (cdmlib): ref #7099 fix loading of EnumSet and add tests
- 03:13 PM EDIT Revision b6177938 (cdmlib): ref #7099 add CdmAuthority to User, remove CDM_VIEW from tests, cleanup
- 03:13 PM EDIT Revision 6183e939 (cdmlib): ref #7099 further updates to CdmAuthority for persistance + add Role class
- 03:13 PM EDIT Revision 7fbe6eb3 (cdmlib): ref #7099 rename CdmPermissionClass to PermissionClass
- 03:13 PM EDIT Revision 55ad1a65 (cdmlib): ref #7099 adapt CdmAuthority class
- 03:13 PM EDIT Revision d5579203 (cdmlib): ref #7099 rename model.rights to model.permission
- 03:13 PM EDIT Revision 39a05e3b (cdmlib): ref #7099 move CRUD and Operation to model
- 03:13 PM EDIT Revision dbc1a185 (cdmlib): ref #7099 minor
- 03:13 PM EDIT Revision 0377d70f (cdmlib): ref #7099 move CdmPermissionClass to model
- 03:13 PM EDIT Revision 899b7d66 (cdmlib): ref #7099 move user, group and GrantedAuthorityImpl to new rights package
- 03:13 PM EDIT Revision 3ff6cdef (cdmlib): ref #8454 add regex to User.username and Group.name
- 03:13 PM EDIT Revision 0b091e82 (cdmlib): adapt SchemaUpdater_55_58 to new version
- 03:09 PM EDIT Revision 8586ad49 (cdm-vaadin): adapt test H2 to schema v5.8.1
08/12/2019
- 11:41 PM EDIT task #8458: document FieldUnitDTOOccurrenceServiceImpl.findFieldUnitDTO()
- As this has been worked on recently we should do it soon.
- 11:36 PM EDIT task #8456: FieldUnitDTO: remove newInstanceMethod
- Passing this ticket to Katja or Patrick as I never worked on/with this class.
Note: syntax of the method name is a...
08/09/2019
- 02:36 PM EDIT bug #8444 (Resolved): Show warning if misapplied names / pro parte synonyms are used more then once
- So I change ticket title for documentation
- 11:59 AM EDIT bug #8444 (Worksforme): Show warning if misapplied names / pro parte synonyms are used more then once
- ahh, yes, sorry, I didn't expect the taxon details to be in a subsection. But this makes sense. We can close this tic...
- 12:58 PM EDIT Revision da93b804 (taxeditor): minor
- 12:13 PM EDIT task #7099 (In Progress): Make CdmAuthority a persistable class
- 12:11 PM EDIT Revision bd2dfdfa (cdmlib): cleanup
- 10:16 AM EDIT feature request #8454 (In Progress): Only allow certain patterns as username and groupname
- 09:20 AM EDIT feature request #8454 (Closed): Only allow certain patterns as username and groupname
- ... to avoid unwanted characters like ;,ö*... Also avoid unvisible characters, whitespaces and linebrakes this way.
...
08/08/2019
- 10:08 PM EDIT Revision 3de07382 (cdmlib): minor
- 03:53 PM EDIT bug #8430 (Closed): maps zoom to wrong bbox with some layers
- Seems to work correctly. I could not find a non-working portal. Also checked some production portals as this was rele...
- 03:42 PM EDIT feature request #8135 (Feedback): Implement verbatim type information in TaxEditor
- Works as expected. Minor issue: translation for button is missing. Can be closed afterwards.
- 03:39 PM EDIT feature request #8334 (Feedback): Move sources for type designations to details view
- Not designated (for SpecimenTypeDesignation) shows up below the sources, but should be above. Sources should be on bo...
- 02:26 PM EDIT bug #8446: Allow setPublish for subtree to filter for hybrids
- Kajta, can you please review functionality once implemented in TaxEditor?
- 02:22 PM EDIT bug #8446 (Resolved): Allow setPublish for subtree to filter for hybrids
- Applied in changeset commit:cdmlib|c44fd9bd6420a032ab1e04c3b92ee4c20f2aac93.
- 02:24 PM EDIT Revision 77f78293 (cdmlib): cleanup
- 02:22 PM EDIT Revision c44fd9bd (cdmlib): fix #8446 Allow setPublish for subtree to filter for hybrids
- 09:22 AM EDIT task #8424: evaluate publish flags in the full derivative path
- As far as I know the SpecimenOrObservation publish flag is not evaluated by webservices at all, yet (or only in very ...
08/07/2019
- 03:07 PM EDIT Revision 7cc1655b (cdmlib): fix #7450 try to fix failing test when running in test suite
- 01:44 PM EDIT feature request #8447 (Closed): Adapt setPublishForSubtree to new parameters for pro parte, misapplications and hybrids
- Also have in mind that the includeSharedTaxa parameter is valid for accepted taxa, misapplications and pro parte syno...
- 01:42 PM EDIT bug #8446 (Closed): Allow setPublish for subtree to filter for hybrids
- In E+M we do not want to set the publish flag to true for hybrids so we need a filter to do so. Alternatively we shou...
- 01:39 PM EDIT feature request #7450 (Resolved): Allow setPublish for subtree to include misapplied names and pro parte synonyms
- Applied in changeset commit:cdmlib|5fb16579cd1fbce2bfa19f12bebc0d4711b23b90.
- 01:39 PM EDIT Revision 5fb16579 (cdmlib): fix #7450 allow setPublish for subtree to include misapplied names and pro parte synonyms
08/06/2019
- 02:40 PM EDIT Revision 8a1e1e44 (cdmlib): cleanup
- 02:14 PM EDIT Revision 27296e89 (cdmlib): cleanup and stream API for ForSubtreeConfigurator
- 02:13 PM EDIT Revision 98df38b9 (cdmlib): pretty print testSetSecundumForSubtree test data
- 12:53 PM EDIT Revision e867c225 (cdmlib): ref #7450 implement interfaces and signatures for setPublishForSubtree for misapplications and ppSyns (not yet implemented)
- 12:44 PM EDIT Revision de671fe5 (cdmlib): minor
08/05/2019
- 04:19 PM EDIT Revision f928093b (cdmlib): ref #7450 revert the incorrect c&p from last commit
- 04:11 PM EDIT Revision 53df0a40 (cdmlib): ref #7450 use PublishForSubtreeConfigurator in TaxonNodeService
- 04:11 PM EDIT Revision c1a30095 (cdmlib): cleanup
- 04:11 PM EDIT Revision 878c54ea (cdmlib): ref #8429 add SchemaUpdater_58_581 and implement update script for setOfReferences renaming
- 04:11 PM EDIT Revision 7bd0a31e (cdmlib): minor
- 02:01 PM EDIT bug #8444 (Closed): Show warning if misapplied names / pro parte synonyms are used more then once
- ... please also consider a "is used more then once" check for such relations
- 12:42 PM EDIT bug #8443: a user with only rights on a subtree can edit taxa and names of another subtree
- is this only an UI issue or is it also a cdmlib-security issue?
- 10:58 AM EDIT task #8435: Reduce logging amount of exports and other long running tasks
- Katja, can you work on this?
- 10:55 AM EDIT task #8437: ITermTreeService provides a list method which supports filtering by TermTree.termType,
- Andreas Kohlbecker wrote:
> Andreas Müller wrote:
> > Have you tested with termType = Character which is a subtype ...
08/02/2019
- 08:39 PM EDIT feature request #8442 (Closed): Add fields to handle external terms to DefinedTermBase or TermBase
- Similar to those created for Reference (#6663).
The fields are
* last retrieved
* externalId
* externalLink
... - 08:25 PM EDIT feature request #8441 (Closed): Add FeatureState class
- ... for inapplicableIf and onlyApplicableIf states and add/change the relationships to TermNode
- 08:22 PM EDIT bug #8429 (In Progress): Rename DeterminationEvent_Reference.setOfReferences_id
- For now we do the column renaming with a model change.
DeterminationEvent_Reference.setOfReferences_id = reference... - 05:29 PM EDIT task #8437: ITermTreeService provides a list method which supports filtering by TermTree.termType,
- So we definetely should write tests before closing.
- 05:27 PM EDIT task #8437 (Feedback): ITermTreeService provides a list method which supports filtering by TermTree.termType,
- Have you tested with termType = Character which is a subtype for Feature. I don't think the "Restrictions" implementa...
- 04:42 PM EDIT Revision 907f5e2f (cdmlib): ref #8422 dependency handling finalized in PolytomousKeyGenerator
- 04:42 PM EDIT Revision 54b77a28 (cdmlib): minor
- 04:42 PM EDIT Revision 73f1250e (cdmlib): ref #8422 add dependencies to PolytomousKeyGenerator
- 04:42 PM EDIT Revision 710cb94e (cdmlib): ref #8422 fix reuse of feature if it shouldn't
08/01/2019
- 09:49 PM EDIT Revision 14987030 (cdmlib): ref #8422 fix leaf handling and simplify and complete tests
- 09:49 PM EDIT Revision a9256c91 (cdmlib): ref #8422 handle single value branches better
- 09:49 PM EDIT Revision feedd788 (cdmlib): cleanup
- 09:49 PM EDIT Revision aabca655 (cdmlib): ref #8422 change sort order for multi-taxon or multi-state branches
- 03:00 PM EDIT Revision 5420e50d (cdmlib): ref #8422 some fixes for merging in PolytomousKeyGenerator
- 03:00 PM EDIT Revision b820a890 (cdmlib): ref #8437 first implementation for listBy termType for TermTreeService, not yet tested
- 03:00 PM EDIT Revision 5f16d935 (cdmlib): minor
- 03:00 PM EDIT Revision e0d15cb3 (cdmlib): minor toString changes
- 03:00 PM EDIT Revision 0174fe98 (cdmlib): ref #8422 adding test for merge mode
- 03:00 PM EDIT Revision 3996640f (cdmlib): minor
- 03:00 PM EDIT Revision b3cf04bc (cdmlib): rename dependencies
- 02:59 PM EDIT task #8437 (In Progress): ITermTreeService provides a list method which supports filtering by TermTree.termType,
- implemented but no tests yet, but maybe you can integrate into controller already
- 09:03 AM EDIT Revision 104ee19a (cdmlib): minor
- 09:03 AM EDIT Revision 4c0f844f (cdmlib): ref #8422 fix scoring for categoricalData
- 09:03 AM EDIT Revision 50e52e0f (cdmlib): minor
- 09:03 AM EDIT Revision ae7c9821 (cdmlib): ref #8422 let PKGenerator only work on TaxonDescriptions for now
07/31/2019
- 04:03 PM EDIT feature request #8432 (In Progress): Improve "default" feature tree handling
- 03:41 PM EDIT feature request #8433 (Duplicate): Disallow user names with whitespace
- Allow only certain letter like [a-z][A-Z]_. Other usernames are errorprone.
Same for group names. - 03:20 PM EDIT bug #6523: Correct display of misspellings in synonymy
- Walter:
Also, erstmal, „orthographic variant“ gibt es anscheinend nur in der Botanik s.l.
Folgende Aussagen im C...
07/30/2019
- 09:53 PM EDIT bug #8429: Rename DeterminationEvent_Reference.setOfReferences_id
- The reason is that the references are called setOfReferences while the getter is getReferences.
Simplest solution:... - 09:43 PM EDIT bug #8426: IndexOutOfBoundsException during serialization of RegistrationWorkingSet
- isn't this very easy to fix? Therefore I put it to 5.9 (and also tried to fix in the meanwhile).
Open question: do... - 09:40 PM EDIT bug #8426 (Resolved): IndexOutOfBoundsException during serialization of RegistrationWorkingSet
- Applied in changeset commit:cdmlib|6b0f8cdfe1643a96638e02dbd924ffd0007785f8.
- 09:40 PM EDIT Revision ddaea59b (cdmlib): ref #8422 PolytomousKeyGenerator: improving sort order and fixing score for quantitative data, + further refactoring
- 09:37 PM EDIT Revision 6b0f8cdf (cdmlib): fix #8426 fix IOOB Exception in RegistrationWorkingSet serialization
- 05:14 PM EDIT Revision 2d0650ce (cdmlib): ref #8422 refactoring PKGenerator+test and minor fixes
- 02:53 PM EDIT bug #8422 (In Progress): Make PolytomousKeyGenerator work (correctly)
- 02:53 PM EDIT bug #8422 (Closed): Make PolytomousKeyGenerator work (correctly)
07/29/2019
07/27/2019
- 01:22 AM EDIT Revision 3fcd7421 (cdmlib): fix PolytomousKeyGenerator (not yet ready)
- 01:22 AM EDIT Revision 90bce0d8 (cdmlib): add some factory methods
- 01:21 AM EDIT Revision 1ed092db (cdmlib): allow handle multiTaxon nodes in polytomousKey.print
- 01:20 AM EDIT Revision 8c7285ac (cdmlib): fix asList(Recursive) methods
- 01:19 AM EDIT Revision dc572c3e (cdmlib): adapt DescriptiveDataSet to allow also descriptive systems with features not only characters
- 01:18 AM EDIT Revision 21fbf707 (cdmlib): cleanup
07/26/2019
- 05:53 PM EDIT feature request #8410 (Closed): Add nomenclatural code edition to ruleConsidered in TaxEditor
- for nomenclatural status, name relation (and hybrid relation once it exists).
Make the field only available if rul... - 02:38 PM EDIT bug #8365: DerivedUnitFacadeCacheStrategy should remove collection codes from accession numbers
- Andreas Müller wrote:
> To me there seems to be a misunderstanding. My understanding of #8365#note-8 is that is fine... - 02:19 PM EDIT bug #8365: DerivedUnitFacadeCacheStrategy should remove collection codes from accession numbers
- One last question: is the original task of the ticket to deduplicate collection code if necessary now implemented in ...
- 02:13 PM EDIT bug #8365: DerivedUnitFacadeCacheStrategy should remove collection codes from accession numbers
- To me there seems to be a misunderstanding. My understanding of #8365#note-8 is that is fine to have brackets for typ...
- 01:58 PM EDIT bug #8365: DerivedUnitFacadeCacheStrategy should remove collection codes from accession numbers
- Andreas Kohlbecker wrote:
> Users frequently enter the collection code with the accession number which can cause to ... - 01:50 PM EDIT feature request #8180 (In Progress): Add property term "Presence/Absence" to CDM default terms
- As the current solution works for additivity maybe we should postpone creating the two new terms until the above ques...
- 01:46 PM EDIT feature request #8180: Add property term "Presence/Absence" to CDM default terms
- Query for above request:
~~~sql
SELECT REPLACE (uri, 'https://terms.tdwg.org/wiki/ft:','')
FROM DefinedTermBase... - 01:31 PM EDIT feature request #8180: Add property term "Presence/Absence" to CDM default terms
- Hallo,
ich sehe gerade das folgende Terme doppelt vorkommen in der Ontologie:
"REPLACE (uri, 'https://terms.tdw... - 12:28 PM EDIT Revision 607b4f94 (cdmlib): add test to cdmlib-cache pom
- 11:35 AM EDIT Revision 09092e90 (taxeditor): cleanup
- 11:07 AM EDIT task #8166: Adapt dataportal to term structure changes
- Yes, we should at least do a string search for "FeatureTree". Also a string search on "FeatureNode".
- 09:50 AM EDIT Revision 5405bf47 (cdmlib): fix problem in CacheLoader
- 01:55 AM EDIT Revision be95b04a (cdmlib): minor
- 01:46 AM EDIT Revision 5bb3ff87 (cdmlib): cleanup
- 01:28 AM EDIT Revision 21410a84 (cdmlib): cleanup
- 01:05 AM EDIT Revision 45f16cd4 (cdmlib): minor
- 01:00 AM EDIT Revision 5b2a2319 (cdmlib): minor
- 12:56 AM EDIT Revision a5d61a3f (cdmlib): minor
- 12:46 AM EDIT Revision f2c629ce (cdmlib): minor
- 12:29 AM EDIT Revision ead8847b (cdmlib): minor
- 12:11 AM EDIT Revision c0951a03 (cdmlib): cleanup TermTree.clone
- 12:11 AM EDIT Revision a08b6fbc (cdmlib): cleanup, javadoc and test for notnull check for termtype in TermTree
07/25/2019
- 11:13 PM EDIT task #8405: Adapt cdm-vaadin to term structure changes
- Are there any changes needed? Vaadin compiles and does not really make use of TermTree(former FeatureTree) so it is m...
- 11:10 PM EDIT task #8166: Adapt dataportal to term structure changes
- Are there any changes needed? Currently it looks like most things work (except maybe for the Specimen page, is this c...
- 04:20 PM EDIT Revision 53c7a226 (cdmlib): ref #6794 rename other TermTree.NewInstance methods and set old version to deprecated
- 04:08 PM EDIT Revision 2617ad64 (cdmlib): update javadoc for TermTree
- (cherry picked from commit 14b218305dfe9023a44d8c7da6e33715a6ef4ba6)
- 04:08 PM EDIT Revision 06de8afc (cdmlib): ref #6794 rename TermTree.NewInstance and set old version to deprecated
- (cherry picked from commit 08b758e2bfba66c82fbc5a636e455edcccb9fa11)
- 03:22 PM EDIT Revision 7a26e61a (cdmlib): ref #8407
- 03:21 PM EDIT Revision 98b0b483 (cdmlib): remove createDefaultFeatureTree from ITermTreeService
- 03:20 PM EDIT Revision 549e8cc5 (cdmlib): ref #6794 rename IFeatureTreeDao in ITermTreeDao
- 02:54 PM EDIT task #8336 (Duplicate): Unignore FeatureTest
- 02:50 PM EDIT bug #8407 (New): Fix "FeatureTest"
- Fix "FeatureTest" (or may now TermTreeTest) which checks the correkt behavior for exporting (and importing?) TermTree...
- 12:27 PM EDIT Revision 8b7ea5be (taxeditor): ref #8281 adapt TaxEditor test data to doubtful flag in TaxonNode
- 12:25 PM EDIT Revision 43613a08 (taxeditor): ref #7334 adapt TaxEditor tests to new schema (delete partial and proparte)
- 11:15 AM EDIT Revision 6cf1445b (cdm-vaadin): adapt vaadin tests to new schema version
- 11:10 AM EDIT Revision ad0a82ca (cdm-vaadin): adapt vaadin tests to new schema version
- 11:03 AM EDIT Revision c8e1c376 (cdm-vaadin): adapt vaadin tests to new schema version
- 10:53 AM EDIT Revision 0f8bf4e9 (cdm-vaadin): update vaadin test H2 to new schema version 5.8
- 10:17 AM EDIT Revision 2be44701 (cdmlib): update cached model for schema version 5.8
- 10:17 AM EDIT Revision 049213b6 (cdmlib): cleanup
07/24/2019
- 08:13 PM EDIT Revision 50cdece7 (taxeditor): update test H2 database to schema version 5.8
- 08:10 PM EDIT Revision cb89f4f7 (taxeditor): ref #6794 adapt TaxEditor to new term structure (rename FeatureNode and FeatureTree)
- 07:50 PM EDIT feature request #8404 (Resolved): Add update step list within updaters
- 04:23 PM EDIT feature request #8404 (Closed): Add update step list within updaters
- currently it is needed to add the step externaly to the step list which leads to errors and requires unnecessary code
- 07:50 PM EDIT feature request #8281 (Resolved): Doubtful flag for TaxonNode
- still need to update E+M data
- 07:49 PM EDIT bug #4884 (Resolved): Update Reference_AUD.refType to allow NULL
- 07:48 PM EDIT feature request #8398 (Resolved): Add nomenclatural code edition to ruleConsidered
- Applied in changeset commit:cdmlib|3b49c84a0287d1f78acb49ff1270a38c679cfd3a.
- 07:44 PM EDIT Revision 973dce58 (cdmlib): update H2 test DB
- 07:37 PM EDIT Revision bd62ef07 (cdmlib): ref #7470 update script correct keys for TextualTypeDesignation_LanguageString
- 07:36 PM EDIT Revision 856dffcf (cdmlib): ref #8404 further cleanup for stepList integration
- 07:34 PM EDIT Revision f628f668 (cdmlib): ref #7470 add TextualTypeDesignation to FullCoverageDataGenerator and add Adder to TaxonName
- 06:13 PM EDIT Revision d9b56bd4 (cdmlib): ref #4884 allow null for Reference_AUD.refType
- 06:12 PM EDIT Revision 68768f85 (cdmlib): ref #4884 unify datatype handling in schema updaters
- 06:11 PM EDIT Revision 956f26a0 (cdmlib): cleanup
- 04:24 PM EDIT Revision 99e01f35 (cdmlib): ref #8404 Add update step list within updaters
- 12:01 PM EDIT Revision 9cb9a9cf (cdmlib): #8398 add botanical codes prior to 1990
- 11:45 AM EDIT Revision 39cb02e8 (cdmlib): minor
- 11:45 AM EDIT Revision 7b9ed797 (cdmlib): ref #7334 remove TaxonBase.proParte and partial and ref #8398 add codeEditon to nomStatus and nameRelations
- 11:24 AM EDIT Revision c5564cac (cdmlib): ref #6794 remove FeatureNodeService from BatchValidationUtil
- 11:20 AM EDIT Revision d10ceac8 (cdmlib): ref #6794 delete FeatureDao
- 11:14 AM EDIT Revision 62779ba1 (cdmlib): ref #6794 javadoc update FeatureTree -> TermTree
- 11:13 AM EDIT Revision cf4196d1 (cdmlib): ref #6794 some adaptations in Jaxb to FeatureTree -> TermTree
- 11:12 AM EDIT Revision 36fc6b9d (cdmlib): ref #6794 adapt jsonConfigurations.xml from FeatureTree/Node -> TermTree/Node
- 11:11 AM EDIT Revision 85bfea3a (cdmlib): ref #6794 add TermTreeService and TermNodeService to httpInvokerServices
- 11:10 AM EDIT Revision f9e5c38d (cdmlib): ref #6794 remove FeatureTree from some hibernate.cfgs again
- 11:08 AM EDIT Revision 1ac56bd8 (cdmlib): ref #8281 add doubtful to TaxonNode (remaining)
- 11:06 AM EDIT Revision 7c2426b5 (cdmlib): remove uplaced, excluded, partial and proparte from TaxonBase test data
- 10:27 AM EDIT task #8363: PESI SOAP service seems to return duplicate records
- Interesting that the UTIS project has a category utis ;-)
07/23/2019
- 10:17 PM EDIT Revision 4f16dfd5 (cdmlib): ref #8281 add doubtful to TaxonNode
- 08:42 PM EDIT Revision 3b49c84a (cdmlib): fix #8398 add nomenclatural code edition to nomStatus, NameRelationship and HybridRelationship and make RuleConsidered an embedded class
- 08:39 PM EDIT Revision ec4afe76 (cdmlib): fix potential NPE in GatheringEvent.clone
- 08:38 PM EDIT Revision 54fefe54 (cdmlib): cleanup
- 01:27 PM EDIT feature request #8398 (Closed): Add nomenclatural code edition to ruleConsidered
- copied from #7975#note-31 :
"... adding an enumeration field to NameRelationship and to NomenclaturalStatus to al... - 01:20 PM EDIT feature request #6794 (In Progress): Improve term structure
07/22/2019
- 06:42 PM EDIT Revision cbfdd05c (cdmlib): ref #6794 ignore FeatureTest
- 06:42 PM EDIT Revision d9fa828c (cdmlib): cleanup
- 06:41 PM EDIT Revision 2f72f4da (cdmlib): ref #6794 add TermNodeService and TermTreeService and make FeatureXXX services deprecated
- 06:39 PM EDIT Revision eb9880a0 (cdmlib): ref #6794 rename some parameters, methods and classes
- 01:38 PM EDIT Revision 11bdf5c4 (cdmlib): ref #6794 rename TermTreeNode -> TermNode
- 01:37 PM EDIT Revision 77dad5ec (cdmlib): ref #6794 rename getFeatureNode -> getTermNode in cdmlib-print
- 01:35 PM EDIT Revision 41061791 (cdmlib): ref #6794 rename TermTreeNode -> TermNode
- 01:32 PM EDIT Revision 10ae9cf0 (cdmlib): ignore ConfigFileUtilTest.testGetFolderSeperator
- 01:31 PM EDIT Revision 76463827 (cdmlib): ref #6794 rename TermTreeNode -> TermNode
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