Andreas Kohlbecker's activity
From 02/14/2019 to 03/15/2019
03/15/2019
- 03:30 PM EDIT Revision a296b200 (cdmlib): ref #8169 adding missing @Transactional to VersionableServiceBase.isDeletable()
- 03:29 PM EDIT bug #8169: avoid factory.openSession() in DaoBase
- VersionableServiceBase.isDeletable misses the @Transactional(readOnly = true) annotation!
- 03:25 PM EDIT bug #8169: avoid factory.openSession() in DaoBase
- Here is a case found in the server log (occurred 6x in a couple of hours):
~~~
[phycobank] 2019-03-15 10:27:44,...
03/14/2019
- 04:05 PM EDIT Revision 63311bd9 (cdm-vaadin): multiple test datasources for tesing multiple test suites
03/13/2019
- 12:30 PM EDIT Revision a3c9dcce (cdm-server): cdmlib-developer.log to be ignored by git
- 12:29 PM EDIT Revision 14a235fc (cdm-server): ref #8173 setting spring.profiles.active in the cdm-sever bootloader if not defined otherwise
- 12:17 PM EDIT Revision 42b67a16 (cdmlib): Revert "ref #8173 removing 'remoting' profile activation from ide launchers"
- This reverts commit 027eaf7c3181f62d725e7b5a677284f07cd5b43b.
- 12:16 PM EDIT Revision dd0d18ea (cdmlib): Revert "ref #8173 activation of profile remoting in the web.xml"
- This reverts commit f2d3f4d37174244ca577203d1228256c6f787a29.
- 09:36 AM EDIT bug #8176 (Resolved): WeaklyRelatedEntityCombobox is slow
- test TaxonNamePopupEditor Genus field, replaced Synonym and Basionym also some ToManyRelatedEntitiesComboboxes and T...
- 09:31 AM EDIT Revision aec76ebb (cdm-vaadin): ref #8176 removing workaround with bad performance which was need for broken TaxonNameStringFilterablePagingProvider.idFor()
- 09:02 AM EDIT Revision eb8d2f54 (cdm-vaadin): ref #8176 bugfix in TaxonNameStringFilterablePagingProvider.idFor()
03/12/2019
- 05:57 PM EDIT bug #8176 (In Progress): WeaklyRelatedEntityCombobox is slow
- 02:15 PM EDIT bug #8176 (Closed): WeaklyRelatedEntityCombobox is slow
- ## on setting values
The WeaklyRelatedEntityCombobox needs to check if the value to set is at all contained in the... - 05:57 PM EDIT Revision af0633ea (cdm-vaadin): ref #8176 WeaklyRelatedEntityCombobox solving minor performance on setValue
- 03:48 PM EDIT Revision f2d3f4d3 (cdmlib): ref #8173 activation of profile remoting in the web.xml
- 12:53 PM EDIT bug #8099: Error saving name type designation editor due to problem in poupeditor context
- can not reproduce
- 12:52 PM EDIT Revision 98db0610 (cdm-vaadin): ref #8132 fixin bug related to transaction rollback in CdmStore
- 10:14 AM EDIT Revision 408fe3ed (cdm-vaadin): avoiding LazyInitialitationException
- 09:09 AM EDIT Revision 8f2aad1d (cdm-server): ref #8173 removing 'remoting' profile activation from ide launchers
- 09:09 AM EDIT Revision 027eaf7c (cdmlib): ref #8173 removing 'remoting' profile activation from ide launchers
- 08:53 AM EDIT Revision df841466 (cdm-server): notes on commented settings regarding debugging of leaky db connections
- 08:36 AM EDIT bug #8105: better hotfix branch strategy in git flow to avoid commits in master which are missing in develop
- I did a brief research on the topic of hotfix branches:
1. git flow has the concept of ***support branches*** by whi...
03/11/2019
- 06:10 PM EDIT Revision 5261131c (cdm-vaadin): ref #8132 proper transaction rollback in CdmStore - copied from hfx branch
- 02:23 PM EDIT Revision d201d8e5 (cdm-vaadin): Merge branch 'hotfix/5.5.3' into develop
- 02:18 PM EDIT Revision e98e8737 (cdm-vaadin): Revert "ref #8132 proper transaction rollback in CdmStore" which has been only been cherry-picked to avoid merge problems during the release later on
- This reverts commit 278e8f9600956b6e8205337045815a153f0a05ac.
- 02:16 PM EDIT Revision 278e8f96 (cdm-vaadin): ref #8132 proper transaction rollback in CdmStore
- merging Conflicts in src/main/java/eu/etaxonomy/cdm/service/CdmStore.java
- 02:01 PM EDIT Revision 23025c30 (cdm-vaadin): ref #8132 proper transaction rollback in RegistrationWorkingsetPresenter
- 02:01 PM EDIT Revision 9f8b217c (cdm-vaadin): adding c3p0.properties to gitignore
- 01:53 PM EDIT bug #8170: javax.sql.DataSource.getConnection() implementation in WrappedCdmDataSource does not conform to the interface
- I opened issue #8171 only for fixing the most severe problem quickly by storing the new connection in the cache field...
- 12:59 PM EDIT feature request #8173 (In Progress): spring profile remoting enabled by default
- 12:55 PM EDIT feature request #8173 (Resolved): spring profile remoting enabled by default
- Applied in changeset commit:cdmlib|5ab0f6455f6cb83bfba0bb5ad6aee6e210d8dd14.
- 12:48 PM EDIT feature request #8173 (In Progress): spring profile remoting enabled by default
- 12:40 PM EDIT feature request #8173 (Closed): spring profile remoting enabled by default
- the spring profile still needs to be enabled by passing `-Dspring.profiles.active=remoting` to cdm-remote instances....
- 12:55 PM EDIT Revision 5ab0f645 (cdmlib): fix #8173 spring profile 'remoting' activated by default
- 12:55 PM EDIT Revision 7d340a47 (cdmlib): fix #8171 internally caching new connection in WrappedCdmDataSource to avoid connection leaks
- 12:55 PM EDIT Revision 80595b0d (cdmlib): ref #7106 proper transaction management in turn of solving the problem in CdmRepository.getSession()
- 12:55 PM EDIT Revision 8db30ca4 (cdmlib): log level for cdm caches to WARN to avoid constant noise from the TransientCdmCacher
- 12:54 PM EDIT bug #8171 (Resolved): javax.sql.DataSource.getConnection() implementation in WrappedCdmDataSource fails to cache the connection which and leaves it unclosed
- Applied in changeset commit:cdmlib|ddaf22cfc36cad56b677c8fecd8eb3e83db5cefb.
- 12:53 PM EDIT Revision 99583d95 (cdm-vaadin): ref #8132 proper transaction rollback in CdmStore
- 11:50 AM EDIT Revision 6f71379a (cdm-vaadin): ref #8132 proper transaction rollback in RegistrationWorkingsetPresenter
- 08:18 AM EDIT Revision 04819529 (cdm-vaadin): adding c3p0.properties to gitignore
- 08:18 AM EDIT Revision 8c1dd527 (cdm-vaadin): setting cdmlib version to 5.5.2-SNAPSHOT
03/08/2019
- 05:28 PM EDIT Revision e22b441a (cdmlib): log level for cdm caches to WARN to avoid constant noise from the TransientCdmCacher
- 05:27 PM EDIT Revision ddaf22cf (cdmlib): fix #8171 internally caching new connection in WrappedCdmDataSource to avoid connection leaks
- 05:17 PM EDIT bug #8132: phycobank cdm-server instance problems with db connections
- Another situation in which a connection is being opened but not properly closed is occurring in the `DataSourceConfig...
- 02:02 PM EDIT bug #8132: phycobank cdm-server instance problems with db connections
- debugging the cdm-server to find connections that have been opened but which are not being closed properly (DebugC3P0...
- 05:06 PM EDIT bug #8171 (Closed): javax.sql.DataSource.getConnection() implementation in WrappedCdmDataSource fails to cache the connection which and leaves it unclosed
- When the existing cached connection in the WrappedCdmDataSource is null a new connection will be created but is not s...
- 04:59 PM EDIT bug #8170 (New): javax.sql.DataSource.getConnection() implementation in WrappedCdmDataSource does not conform to the interface
- the documentation of `javax.sql.DataSource.getConnection()` reads like *"**Attempts to establish** a connection with ...
- 02:26 PM EDIT Revision 5479cc9a (cdm-vaadin): ref #8132 fixing problem of uncommited transaction in RegistrationWorkingsetPresenter
- 02:21 PM EDIT Revision d2accd99 (cdm-vaadin): ref #8132 fixing problem of uncommited transaction in RegistrationWorkingsetPresenter
- 01:56 PM EDIT Wiki edit: DebugC3P0Connections (#17)
- 12:09 PM EDIT Wiki edit: DebugC3P0Connections (#16)
- 11:55 AM EDIT Wiki edit: DebugC3P0Connections (#15)
03/07/2019
- 05:37 PM EDIT Wiki edit: DebugC3P0Connections (#14)
- 04:58 PM EDIT Revision 998a72e0 (cdm-vaadin): ref #7106 refactoring CdmStore in turn of changed CdmRepository.getSession()
- - CdmStore as Spring bean
- CdmStore managed transactions and sessions properly - 03:26 PM EDIT bug #8169 (New): avoid factory.openSession() in DaoBase
In DaoBase using `factory.openSession()` is plain wrong, the HibernateTransactionManger should be used instead.
- 03:24 PM EDIT bug #7106 (In Progress): avoid factory.openSession() in CdmRepository
- 02:17 PM EDIT bug #7106: avoid factory.openSession() in CdmRepository
- since February 25th there are only occurrences related to this issue in the log which affected the phycobank code.
W... - 07:25 AM EDIT bug #7106: avoid factory.openSession() in CdmRepository
- with the logging of the stacktrace it now becomes clear where the unmanaged sessions are being created:
~~~~
java... - 02:57 PM EDIT Revision b7647a99 (cdm-vaadin): ref #7106 using new CdmRepository.clearSession() method
- 02:54 PM EDIT Revision 6d6ae033 (cdmlib): ref #7106 logging unintentially creation of unmanaged new session in DaoBase with stacktrace
- 02:54 PM EDIT Revision ff628107 (cdmlib): ref #7106 throwing Exception instead of unintentially creating unmanaged new session
- 12:37 PM EDIT bug #8132: phycobank cdm-server instance problems with db connections
- The problem just occurred again. This time no one was using the Taxeditor since the instance has been started.
The... - 11:21 AM EDIT task #8168 (New): Check if withdrawing of per entity permission is working correctly for inReferences
- 11:17 AM EDIT bug #8167 (Closed): Permission denied for Submitter when adding section to newly created journal
~~~
[phycobank] 2019-03-07 09:56:41,648 ERROR [qtp1510067370-69] [org.hibernate.internal.SessionImpl] - HHH000346:...
03/06/2019
- 06:20 PM EDIT Revision 3cee4d12 (cdm-server): ref #7729 suppress nasty ehcache OutOfMemory warnings to reduce clutter in the server log
- 06:07 PM EDIT Revision d75c4b91 (cdm-server): ref #8132 c3p0 settings for debugging lost jdbc connections
- 05:43 PM EDIT Revision 568fb7dc (cdmlib): ref #7106 logging stacktrace with 'Opening new session in turn of a HibernateException'
- 05:00 PM EDIT bug #7106: avoid factory.openSession() in CdmRepository
- In a locally running cdmserver started vi the eclipse launcher *cdm-server - start from war* multiple occurrences can...
- 02:23 PM EDIT Revision c5a114a8 (cdm-dataportal): ref #8166 adapting to change in FeatureNode property 'feature' becomes 'term' - 2
- 01:57 PM EDIT Revision b011743c (cdm-dataportal): ref #8166 adapting to change in FeatureNode property 'feature' becomes 'term'
- 01:56 PM EDIT task #8166 (Closed): Adapt dataportal to term structure changes
- the dataportal needs to be adapted to the changes applied in the context of #6794
- 12:30 PM EDIT Revision 17ff12b9 (cdm-dataportal): Merge tag '5.5.1' into develop
- tagging hotfix release 5.5.1
- 12:30 PM EDIT Revision 43bc8f03 (cdm-dataportal): Merge branch 'hotfix/5.5.1'
- 10:44 AM EDIT feature request #8165 (New): enable logback jmx for cdm-server
- having the logback jmx beans enabled would be a great help during debugging of the production server and other system...
03/05/2019
- 05:22 PM EDIT bug #8132: phycobank cdm-server instance problems with db connections
- Results from the server log:
The problem occurred again. The jdbc connection which was being used by the tread `qt... - 04:09 PM EDIT Revision e29a4a6e (cdm-server): loggin: eu.etaxonomy.cdm.cache.CdmTransientEntityCacher on level WARN
- 04:05 PM EDIT Revision 5976b46d (cdm-vaadin): Merge branch 'hotfix/5.5.2' into develop
- 03:49 PM EDIT Revision 09c85ccb (cdm-vaadin): ref #8160 CdmBeanItemContainerFactory @Transactional only where needed and clearing session before each service call
- 02:58 PM EDIT bug #8107 (Closed): NPE when throwing PopupEditorException in AbstractPopupEditor
- issue is not reproducible - closing.
- 11:49 AM EDIT feature request #8163 (Rejected): RegistrationService.setStatus() method implemented
- This method need to be used by the RegistrationWorkingsetPresenter.saveRegistrationStatusChange() method in cdm-vaadi...
- 11:21 AM EDIT bug #8161 (Rejected): *FilterablePagingProvider classes as transactional readonly spring beans
- the *FilterablePagingProviders only are using service methods which are anyway annotated with `@Transactional(readOnl...
- 11:21 AM EDIT bug #7945 (Rejected): TaxonNamePopupEditor: missing genus causes exception when updating name parts visibility
- the *FilterablePagingProviders only are using service methods which are anyway annotated with `@Transactional(readOnl...
- 11:14 AM EDIT bug #8075 (In Progress): multiple cascade all-delete-orphan exceptions related to DefinedTermBase.representations
- 10:55 AM EDIT bug #8158: cascade="all-delete-orphan" problem when ....
- potentially duplicate of #8160
03/04/2019
- 03:36 PM EDIT Revision 52aa37ab (cdm-vaadin): ref #8161 TaxonNameStringFilterablePagingProvider as transactional readonly prototype bean
- 03:06 PM EDIT bug #7881: reference selection combobox broken after error in ...
- potentially duplicate of #8161
- 03:04 PM EDIT bug #7945: TaxonNamePopupEditor: missing genus causes exception when updating name parts visibility
- potentially duplicate of #8161
- 03:00 PM EDIT bug #8065: HibernateException: corrupt session problem breaks SpecimenTypeDesignationworkingsetEditor type designation table
- potentially duplicate of #8160
- 02:07 PM EDIT bug #8160 (Resolved): CdmBeanItemContainerFactory as readonly service bean
- 12:43 PM EDIT bug #8160 (Closed): CdmBeanItemContainerFactory as readonly service bean
- Turning the CdmBeanItemContainerFactory into a readonly service bean should solve the cascade="all-delete-orphan" pro...
- 02:05 PM EDIT Revision 3506344d (cdm-vaadin): changing oder of resource in pom - only cosmetic
- 01:53 PM EDIT Revision f4f3c705 (cdm-vaadin): ref #8160 CdmBeanItemContainerFactory as service bean to load entities only in readyOnly transactions to avoid unintendet flushing
- 12:47 PM EDIT bug #8161 (Rejected): *FilterablePagingProvider classes as transactional readonly spring beans
- Turing the TaxonNameStringFilterablePagingProvider into a readonly service bean should solve the cascade="all-delete-...
- 11:52 AM EDIT task #4600 (New): Investigate and implement tests for security in cdm-vaadin
- 11:51 AM EDIT task #4600 (In Progress): Investigate and implement tests for security in cdm-vaadin
- 11:47 AM EDIT bug #7879: Book CacheStrategy does not show 'place published', 'publisher', 'editor'
- Hi Andreas, I am passing this to you since it is a bug in the cache strategy and closely related to #1866
03/01/2019
- 10:00 PM EDIT Revision 217236bc (cdm-vaadin): adapting test to modified number of TaxonRelationshipTypes
- 08:29 PM EDIT Revision 8a8599be (cdmlib): fixing strange error logging in TestingTermInitializer and throwing RuntineException since error is unrecoverable
- 08:27 PM EDIT Revision f178b3fc (cdmlib): moving kindOfUnitTerms from cdm-vaadin:TermsDataSet-ui-registration-with_auditing_info.xml to edit-test:TermsDataSet-with_auditing_info.xml
- 08:26 PM EDIT Revision a4a47802 (cdm-vaadin): moving kindOfUnitTerms from cdm-vaadin:TermsDataSet-ui-registration-with_auditing_info.xml to edit-test:TermsDataSet-with_auditing_info.xml
- 04:05 PM EDIT bug #8132: phycobank cdm-server instance problems with db connections
- It seems as if this problem is being cased by the CdmFilterablePagingProvider which might open an new Sesscion which ...
- 02:46 PM EDIT bug #8132: phycobank cdm-server instance problems with db connections
- this here https://stackoverflow.com/questions/34408362/c3p0-connection-pool-gives-connection-timeout-error-with-this-...
- 01:58 PM EDIT bug #8132: phycobank cdm-server instance problems with db connections
- Andreas Kohlbecker wrote:
> I set `testConnectionsOnCheckIn=true` temporarily via jmx in order to test if this helps... - 11:13 AM EDIT task #615 (Closed): remove suns repository
- the repository
~~~xml
<!-- sun repository -->
<repository>
<id>java.net</id>
<url>http:... - 11:11 AM EDIT task #615 (Resolved): remove suns repository
- Applied in changeset commit:cdmlib|d402220f823edfb01ec9385d20117d6afee9a77d.
- 11:11 AM EDIT Revision d402220f (cdmlib): fix #615 removing unused sun maven repo
- 07:17 AM EDIT bug #8158 (Closed): cascade="all-delete-orphan" problem when ....
- I seem to remember that I did the following:
1. RegistrationWorkingsetEditor at http://api.phycobank.org/phycobank...
02/28/2019
- 09:54 PM EDIT feature request #8157 (New): Registration list view: sort registrations by the same order as in the dataportal
- newer registrations should come first.
Oder by created when! (agreed) - 09:50 PM EDIT feature request #8156: Registration items show type status in bold letters
- should be easy to implement, thus i am setting the priority to high
- 09:50 PM EDIT feature request #8156 (Closed): Registration items show type status in bold letters
- The type status in registration items is not easy to see. Making the status bold would improve the readability.
- 09:47 PM EDIT feature request #8155 (Feedback): SpecimenTypeDesignationEditor: allow choosing the typified name from the homotypical group for specific type status
- 09:47 PM EDIT feature request #8155: SpecimenTypeDesignationEditor: allow choosing the typified name from the homotypical group for specific type status
- For how urgent do you consider this feature, Henning? I guess this situation will occur quite frequently?
- 09:42 PM EDIT feature request #8155 (Feedback): SpecimenTypeDesignationEditor: allow choosing the typified name from the homotypical group for specific type status
- In case of lecto-, epit- and neo-types the SpecimenTypeDesignationEditor should selecting the typified name from the ...
- 05:30 PM EDIT bug #7514: Change direct and inverse symbol for pro parte synonym and misapplied name relationship types.
- the test page http://int.e-taxonomy.eu/dataportal/integration/reference/cdm_dataportal/taxon/c6716cee-2039-4ba8-a239-...
- 05:24 PM EDIT Revision 2ae1c797 (cdm-dataportal): ref #7514 adapting tests to conform to new misapplied name symbols
- 04:12 PM EDIT bug #8154 (Worksforme): NameController.doGetTaggedName fails due to [UPDATE] not permitted for 'anonymousUser' on Person
- http://160.45.63.173:8081/phycobank/name/a2b01d35-fdcf-43fb-8376-f03f195c6e06/taggedName.json
fails every ~4 times... - 03:05 PM EDIT bug #8152 (Duplicate): ReferencePopupEditor: inReference field allows to select references with type GEN but field validation fails in this case
- Henning: References with type 'Generic' must not be in the list, filter only by matching type
So this is a duplica... - 01:05 PM EDIT bug #8152 (Duplicate): ReferencePopupEditor: inReference field allows to select references with type GEN but field validation fails in this case
- Heba reported an error which was due the Journal "Rickia" having the Referencetype 'Generic'
The reference could b... - 11:57 AM EDIT bug #7107: "Omit level" (TDWG Level2) in distribution hierarchy should not supress distributions source reference
- OK
- 11:37 AM EDIT bug #7107 (Feedback): "Omit level" (TDWG Level2) in distribution hierarchy should not supress distributions source reference
- Hallo Andreas, ich denke das ist auch für Euro+Med releveant, oder?
Wenn ja, sollten wir das Tag hinzufügen und di...
02/27/2019
- 03:52 PM EDIT bug #8132: phycobank cdm-server instance problems with db connections
- I set `testConnectionsOnCheckIn=true` temporarily via jmx in order to test if this helps avoiding this connectivity p...
02/26/2019
- 07:46 PM EDIT Revision 5bc58b89 (cdmlib): removing unused private fiels in H2DatabaseType
- 03:31 PM EDIT Revision c30d94b9 (cdm-vaadin): removing unused xsd files
- 02:37 PM EDIT feature request #3616: Show DescriptionElementBase.timeperiod in Dataportals
- Andreas Müller wrote:
> Generally it looks fine.
>
> Only the formatting maybe needs discussion. It differs from... - 01:00 PM EDIT feature request #3616 (Resolved): Show DescriptionElementBase.timeperiod in Dataportals
- Implemented
please review, for the page used by the integration test, please see : http://int.e-taxonomy.eu/datapo... - 01:42 PM EDIT task #7356: setup selenium test suite for cdm-vaadin
- Adding master thesis on Vaadin TestBench
- 12:12 PM EDIT feature request #8144: Check if modifiers and modifyingText is handled correctly for description elements in data portals
- since modifiers and modifyingText can not be added to the database easily I need to wait until the issue #3836 is com...
- 12:09 PM EDIT Revision 940bbcf2 (cdm-dataportal): ref #3616 implementing tests for DescriptionElementBase.timeperiod
- 11:54 AM EDIT Revision 90425089 (cdm-dataportal): ref #3616 implementing display of DescriptionElementBase.timeperiod
- 11:53 AM EDIT Revision d0e8e73c (cdm-dataportal): ref #3616 fixing multibyte character problem related to time periods
- 11:10 AM EDIT task #8118: Update MySQL drivers
- Andreas Müller wrote:
> Starting with MySQL JDBC Driver 5.1.33 serverTimezone needs to be explicitly defined in conn...
02/25/2019
- 06:13 PM EDIT feature request #3747 (Closed): Check if time period is handled correctly for description elements in data portals
- check for and modifiers and modifyingText copied to new ticket, closing this issue
- 06:08 PM EDIT feature request #3747: Check if time period is handled correctly for description elements in data portals
- since modifiers and modifyingText can not be added to the data easily I need to wait until the issue #3836 is complet...
- 06:03 PM EDIT feature request #3747 (In Progress): Check if time period is handled correctly for description elements in data portals
- The scope of this ticket includes modifiers and modifyingText ... reopening issue
- 06:00 PM EDIT feature request #3747 (Closed): Check if time period is handled correctly for description elements in data portals
- the output of timeperiod for DescriptionElements is missing so far in the Dataportal. So ticket #3616 becomes relevan...
- 06:10 PM EDIT feature request #8144 (In Progress): Check if modifiers and modifyingText is handled correctly for description elements in data portals
- not relevant for TextData as we expect that TextData will handle modifiers with its text (see #3836)
- 06:04 PM EDIT feature request #3616 (In Progress): Show DescriptionElementBase.timeperiod in Dataportals
- 05:28 PM EDIT feature request #3746: Implement time period scope for description elements in TaxEditor
- The output in the taxeditor can very ugly depending on the partial fields being used:
* Timescope: start month: ... - 04:00 PM EDIT bug #8105 (In Progress): better hotfix branch strategy in git flow to avoid commits in master which are missing in develop
- it turned out that it can happen that cherries need to be modified when picking them from hotfix to develop. This hap...
- 03:48 PM EDIT bug #8132: phycobank cdm-server instance problems with db connections
- Andreas Kohlbecker wrote:
> I added `autoReconnect=true` to the connection string of the phycobank datasource.
us... - 03:21 PM EDIT bug #8132: phycobank cdm-server instance problems with db connections
- I added `autoReconnect=true` to the connection string of the phycobank datasource.
- 01:06 PM EDIT bug #8132: phycobank cdm-server instance problems with db connections
- these connectivity problems should be prevented by c3p0 since the `idleConnectionTestPeriod` is set to `600` (10 minu...
02/22/2019
- 06:38 PM EDIT bug #8132 (Worksforme): phycobank cdm-server instance problems with db connections
the phycobank cdm-server instance which is running in a docker container got problems with the db connections
P...- 06:28 PM EDIT bug #8119 (Rejected): Link a PhycoBank Id in a Proof to Portal
- this is only a side effect of as problem with the server which fails to respond sometimes
- 05:54 PM EDIT bug #8119: Link a PhycoBank Id in a Proof to Portal
- the requires status message seems to be visible only for logged in users:
- 06:18 PM EDIT feature request #8093 (Closed): harmonize registrationId links and make tesing easier
- 06:17 PM EDIT feature request #8093 (Resolved): harmonize registrationId links and make tesing easier
- Applied in changeset commit:cdm-dataportal|977bba78560ff1387b601420f9c55409ac19fd92.
- 06:17 PM EDIT Revision 977bba78 (cdm-dataportal): fix #8093 registration identifier links configurable
- 05:22 PM EDIT bug #5774: cdmserver misses to detect some errors in failed instances
- I guess you are right. I was lowering the priority that much because the issue has not been reported for 2 years, but...
- 05:15 PM EDIT bug #7087 (Worksforme): description/accumulateDistributions webservice can not be triggered
- tested by using httpie and it works again, it seems this has been fixed meanwhile
- 05:05 PM EDIT Revision 3a973027 (cdmlib): ref #7106 logging if the worse case is actually happening
- 05:03 PM EDIT bug #7106 (Feedback): avoid factory.openSession() in CdmRepository
- I am modifying the logging in mentioned case to allow us checking in the server logs if this case is actually happeni...
- 04:45 PM EDIT feature request #5807 (New): Implement sub-distribution area inclusion in TaxonService.findTaxaAndNamesByFullText()
- this is still not working:
http://test.e-taxonomy.eu/dataportal/preview/euromed/cdm_dataportal/search/results/taxo... - 04:10 PM EDIT feature request #5807 (Feedback): Implement sub-distribution area inclusion in TaxonService.findTaxaAndNamesByFullText()
- trying to reproduce this at the euro+med portal, since this taxon no longer is found in the caucasus portal:
http:... - 04:22 PM EDIT bug #2074 (Rejected): network independend CdmUpdaterTest
- I am no longer using eu.etaxonomy.cdm.database.update.CdmUpdaterTest since cdm-remote supports the `force-scheamupdat...
- 04:18 PM EDIT bug #8131 (Rejected): reindexing fuction in dataportal setting reports fails
- it was really the wrong credentials that i used
- 04:09 PM EDIT bug #8131 (Rejected): reindexing fuction in dataportal setting reports fails
- even with correct credentials "Error: Are your credentials correct?" is being reported
- 03:52 PM EDIT bug #7938: cdmserver sub-processes (threads) with constant high cpu
- this never occurred since 3 months, lowering priority
- 03:41 PM EDIT bug #8105 (Closed): better hotfix branch strategy in git flow to avoid commits in master which are missing in develop
- 03:39 PM EDIT Wiki edit: Release_Notes (#431)
- 10:01 AM EDIT bug #8099: Error saving name type designation editor due to problem in poupeditor context
- AHH ich glaube jetzt habe ich es. Ein alter Dump der DB hat mir*Geitleriaceae Kilgore & J.R.Johans.* auf die Sprünge...
02/21/2019
- 05:10 PM EDIT task #8118: Update MySQL drivers
- I read through the change sets, all are looking as expected.
As next step we should run a test against a maria db ... - 04:46 PM EDIT Revision b599ad36 (cdm-vaadin): ref #8117 commenting orthographic corrected names filter to prevent from unclear performance probelms, see ref #7899
- 03:50 PM EDIT bug #8105: better hotfix branch strategy in git flow to avoid commits in master which are missing in develop
- note for developers added to the ticket description .....
- 03:40 PM EDIT bug #8105 (Resolved): better hotfix branch strategy in git flow to avoid commits in master which are missing in develop
- by this the git-hfx-cherry-check should be executed for all HFX_FINISH jobs, in case of errors the job will FAIL sinc...
- 03:36 PM EDIT bug #8105: better hotfix branch strategy in git flow to avoid commits in master which are missing in develop
- and ... using git-hfx-cherry-check.sh in gitflow-finish.sh and maven-gitflow-HOTFIX-finish.sh
- 03:22 PM EDIT bug #8105: better hotfix branch strategy in git flow to avoid commits in master which are missing in develop
- Script to check for cherries in the HFX Finish jobs created: https://dev.e-taxonomy.eu/svn/trunk/server-scripts/jenki...
- 02:41 PM EDIT bug #8117: CdmFilterablePagingProviderFactory.taxonNamesWithoutOrthographicIncorrect() causes performance overhead
- Correction: The sql query showing the problem is:
~~~sql
select
this_.id as id1_499_2_, this_.created as cr... - 12:29 PM EDIT bug #8117: CdmFilterablePagingProviderFactory.taxonNamesWithoutOrthographicIncorrect() causes performance overhead
- the most time is actually consumed by
Do we need to update the mysql driver for some r... - 12:24 PM EDIT bug #8117: CdmFilterablePagingProviderFactory.taxonNamesWithoutOrthographicIncorrect() causes performance overhead
- The query created by the restriction performs not so bad (55ms):
~~~sql
select
this_.id as id1_499_2_, this_... - 11:32 AM EDIT bug #8117 (New): CdmFilterablePagingProviderFactory.taxonNamesWithoutOrthographicIncorrect() causes performance overhead
in
CdmFilterablePagingProviderFactory.taxonNamesWithoutOrthophicIncorrect()
a restriction is being used whic...- 02:38 PM EDIT Revision aeddf804 (cdm-vaadin): fixing probelm with unchecked optional
- 12:40 PM EDIT Revision 8d8da57a (cdm-vaadin): ref #8117 commenting orthographic corrected names filter to prevent from unclear performance probelms, see ref #7899
- 11:28 AM EDIT bug #8116 (New): ProgressMonitorManager: logging instead of System.err
- In the ProgressMonitorManager an ignored error is logged to `System.err.println`
All logging should go to the logg... - 11:06 AM EDIT bug #8099 (Feedback): Error saving name type designation editor due to problem in poupeditor context
- 11:05 AM EDIT bug #8099: Error saving name type designation editor due to problem in poupeditor context
- Hakllo Henning
ich verstehe Step 2,3 oben nicht, was hat du da genau gemacht?
Andreas
02/19/2019
- 06:22 PM PhycoBank task #7012: Workflow with Pensoft
- updating diagram with corections. (96dpi)
- 05:46 PM EDIT bug #8097: Problem with inserting a section - inReference is "lost"
- issue completed.
Please review. - 05:46 PM EDIT bug #8097 (Resolved): Problem with inserting a section - inReference is "lost"
- Applied in changeset commit:cdm-vaadin|2bcb1498b2db48c720edfcfcac25e733be35cfb8.
- 05:07 PM EDIT bug #8097: Problem with inserting a section - inReference is "lost"
- As first solution to this problem we decided on making the inReference field required for all iSection refernfence ty...
- 05:46 PM EDIT Revision 2bcb1498 (cdm-vaadin): fix #8097 inReference field required for section reference types
- 04:48 PM EDIT bug #5699 (Closed): user profile settigs in cdm_dataportal module done wrong
- 04:48 PM EDIT bug #5699 (Resolved): user profile settigs in cdm_dataportal module done wrong
- Applied in changeset commit:cdm-dataportal|bf31af5f546f2b686f6d05c1357ce41d4bf6d09c.
- 04:46 PM EDIT bug #5699: user profile settigs in cdm_dataportal module done wrong
- this feature isn't used in any of the portals can can be removed.
- 04:48 PM EDIT Revision bf31af5f (cdm-dataportal): fix #5699 complete removal of unused per user default tab settings
- 11:31 AM EDIT bug #8104: TaxonName.getLastNamePart erroneously renamed .getFamiliyNamePart
- Please can you have a quick look on the reversion of your commit?
- 11:30 AM EDIT bug #8104 (Resolved): TaxonName.getLastNamePart erroneously renamed .getFamiliyNamePart
- Applied in changeset commit:cdmlib|6b548bff807c53bdc4e3676d4b74b83b8f31be4f.
- 11:30 AM EDIT Revision 6b548bff (cdmlib): fix #8104 renaming familiyNamePart back to lastNamePart
- 11:02 AM EDIT feature request #4922: GrantedAuthorities not reusable anymore
- I have concerns about duplicating GAs as this will complicate first data inserters and managing of default GAs in gen...
- 09:29 AM EDIT task #8109 (New): Concept for linking from taxon entries to name pages
- Taxon entries in the data portal do not allow to navigate to the according name page.
This will become important o... - 09:18 AM EDIT feature request #8108: Name page shows complete name information (I)
- Hallo,
...
Allerdings ist die Frage schon interessant: Das wirkliche Potential Taxon fehlt halt in >99% der F... - 09:17 AM EDIT feature request #8108: Name page shows complete name information (I)
- Hallo,
will ja nicht pingelig sein, aber ein „Name used in Source“ ist ja im Prinzip ein Potential Taxon und kann ... - 09:16 AM EDIT feature request #8108: Name page shows complete name information (I)
- AM:
Wichtig wäre hier auch die Frage, wie man diese expliziten Namensinformationen auf einer normalen Taxonpage ve... - 09:15 AM EDIT feature request #8108 (Closed): Name page shows complete name information (I)
- Derzeit ist diese Seite mehr oder weniger nur ein Weiterleitungsmechanismus zu den zugehörigen Taxa.
Die besser a...
02/18/2019
- 06:05 PM EDIT bug #8107 (Feedback): NPE when throwing PopupEditorException in AbstractPopupEditor
- 06:05 PM EDIT bug #8107: NPE when throwing PopupEditorException in AbstractPopupEditor
- [Henning:]
> Hier waren Gattungsnamen vor dem Import nicht verfügbar, daher wurde das Pflichtfeld Gattungsname nic... - 05:01 PM EDIT bug #8107 (In Progress): NPE when throwing PopupEditorException in AbstractPopupEditor
- The NPE occurred during while creating the PopupEditorException to be thrown in turn of an other exception which has ...
- 04:51 PM EDIT bug #8107 (Closed): NPE when throwing PopupEditorException in AbstractPopupEditor
- Heba reported an NPE which occurred while saving a name popup editor:
Problem beim Speichern um 10:08 Uhr.
http:/... - 05:25 PM EDIT Revision 592b9851 (cdm-vaadin): ref #8107 getFieldGroup() returns Optional<FieldGroup> to avoid NPEs and logging errors before rethrowing as PopupEditorException
- 04:11 PM EDIT feature request #8106 (Closed): improve image gallery settings labeling
- done!
- 04:11 PM EDIT feature request #8106 (Resolved): improve image gallery settings labeling
- Applied in changeset commit:cdm-dataportal|5358baffb125a13d97910717acfcca8e978d63f5.
- 04:03 PM EDIT feature request #8106 (Closed): improve image gallery settings labeling
- requested by AM:
Vielleicht könnte man bei der Configuration den Text noch etwas anpassen, so dass klar ist was pa... - 04:11 PM EDIT Revision 5358baff (cdm-dataportal): fix #8106 better labels for the imagegallery settings related to the thumbnail size
- 12:22 PM EDIT bug #8105 (In Progress): better hotfix branch strategy in git flow to avoid commits in master which are missing in develop
- During the release of the taxeditor 5.5.0 it turned out, that the `master`branch has received commits from the `hotfi...
- 10:19 AM EDIT Revision 18190ef3 (taxongraph-view): switching base url to api.phycobank.org
- 10:16 AM EDIT Revision 7dcedec2 (taxongraph-view): non minified version of dagre.js
- 10:13 AM EDIT Revision ba56c9d7 (taxongraph-view): adding updated full test data set
- 09:51 AM EDIT bug #8104 (Closed): TaxonName.getLastNamePart erroneously renamed .getFamiliyNamePart
- **The TaxonName property `lastNamePart` has erroneously been changed during the refactoring for #7238 to `familyNam...
02/15/2019
- 06:52 PM PhycoBank feature request #8103 (Rejected): Feedback mechanism from curator to publisher and author team
- As pointed out in #7012 "*Curatorial process in the registration office*" a feed back mechanism is need for the curat...
- 05:33 PM PhycoBank task #8102 (New): typedsignations without status
- es sind 95 Typedesignations betroffen 6 SpecimenTypeDesignations und 89 NameTypes
most important are the issues li... - 04:57 PM EDIT bug #8101 (New): cdm-server docker container uses wrong timezone
- The docker container uses UTC but should be in the same timezone as the host system.
~~~~
edit-production ~ # dat... - 04:40 PM EDIT bug #8098 (Duplicate): Cache update for Portal view
- I can no longer reproduce this problem, the reference looks ok now.
I thus will close this issue as duplicate of #... - 04:37 PM EDIT bug #8100: Cache update in UI
- It seems as if the updating of in-reference Article is not causing the contained reference section to be updated.
- 04:29 PM EDIT bug #8100: Cache update in UI
- Did you update the inreference "Fottea"? The Article was not touched?
- 11:34 AM PhycoBank task #7012: Workflow with Pensoft
- 96dpi
- 11:32 AM PhycoBank task #7012: Workflow with Pensoft
- 120 dpi
- 11:30 AM PhycoBank task #7012: Workflow with Pensoft
- higher dpi: 96
- 11:29 AM PhycoBank task #7012: Workflow with Pensoft
- updating the workflow with curatorial review
02/14/2019
- 10:50 PM EDIT Wiki edit: Release_Notes (#429)
- 03:03 PM EDIT Wiki edit: Release_Notes (#426)
- 03:01 PM EDIT Wiki edit: Release_Notes (#425)
- 09:52 AM EDIT Wiki edit: Release_Notes (#417)
- 09:51 AM EDIT Wiki edit: Release_Notes (#416)
- 09:41 AM EDIT Wiki edit: Release_Notes (#415)
- 04:20 PM EDIT task #8091: Discuss Referencetype PrintSeries with respect to user needs of PhycoBank and taxonomic projects
- yes please
- 02:39 PM EDIT Revision b3b49290 (taxeditor): deleting file to solve merge conflicts during the release which came with hotfix 5.4.3
- 08:56 AM EDIT feature request #8030 (Closed): Cache updater service methods externalized and base class specific
- review completed, no issues found
- 08:55 AM EDIT bug #7874 (Closed): TeamOrPersonBase entity can become unusable due to replacement of the title caches on using getters
- looks like fixed by 100%
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