From ae0ff09262d33c6f3be922fe1c6a624daebff6c2 Mon Sep 17 00:00:00 2001
From: "b.stoever" <b.stoever@localhost>
Date: Mon, 23 Mar 2015 18:03:02 +0000
Subject: [PATCH] OpenAlignmentEditorHandler marked as deprecated. equals() and
 hashCode() added to AlignmentEditorInput. Minor changes.

---
 .../editor/handler/EditSequenceHandler.java   |  5 ----
 .../handler/OpenAlignmentEditorHandler.java   |  1 +
 .../editor/molecular/AlignmentEditor.java     |  2 +-
 .../molecular/AlignmentEditorInput.java       | 28 +++++++++++++++++++
 4 files changed, 30 insertions(+), 6 deletions(-)

diff --git a/eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/handler/EditSequenceHandler.java b/eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/handler/EditSequenceHandler.java
index d6aa37d47..dc41cf1ff 100644
--- a/eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/handler/EditSequenceHandler.java
+++ b/eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/handler/EditSequenceHandler.java
@@ -1,11 +1,6 @@
 package eu.etaxonomy.taxeditor.editor.handler;
 
 
-import java.net.URI;
-import java.util.ArrayList;
-import java.util.List;
-import java.util.Set;
-
 import org.eclipse.core.commands.AbstractHandler;
 import org.eclipse.core.commands.ExecutionEvent;
 import org.eclipse.core.commands.ExecutionException;
diff --git a/eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/handler/OpenAlignmentEditorHandler.java b/eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/handler/OpenAlignmentEditorHandler.java
index 1daba07c2..4350fa29c 100644
--- a/eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/handler/OpenAlignmentEditorHandler.java
+++ b/eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/handler/OpenAlignmentEditorHandler.java
@@ -28,6 +28,7 @@ import eu.etaxonomy.taxeditor.model.MessagingUtils;
  * @author pplitzner
  * @date 04.08.2014
  */
+@Deprecated
 public class OpenAlignmentEditorHandler extends AbstractHandler {
     /* (non-Javadoc)
      * @see org.eclipse.core.commands.IHandler#execute(org.eclipse.core.commands.ExecutionEvent)
diff --git a/eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/molecular/AlignmentEditor.java b/eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/molecular/AlignmentEditor.java
index e0025ccad..b1537e9b3 100644
--- a/eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/molecular/AlignmentEditor.java
+++ b/eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/molecular/AlignmentEditor.java
@@ -279,7 +279,7 @@ public class AlignmentEditor extends EditorPart {
 				readCDMData();
 			}
 			else {
-				createTestContents();  //TODO What to do here instead in the final version?
+				createTestContents();  // This case will removed after the test phase and an exception should probably be thrown.
 			}
 		}
 		else {
diff --git a/eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/molecular/AlignmentEditorInput.java b/eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/molecular/AlignmentEditorInput.java
index 1664a0895..9d6201d20 100644
--- a/eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/molecular/AlignmentEditorInput.java
+++ b/eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/molecular/AlignmentEditorInput.java
@@ -102,4 +102,32 @@ public class AlignmentEditorInput implements IEditorInput {
 	public Sequence getSequenceNode() {
 		return sequenceNode;
 	}
+
+
+	@Override
+	public int hashCode() {
+		final int prime = 31;
+		int result = 1;
+		result = prime * result
+				+ ((sequenceNode == null) ? 0 : sequenceNode.hashCode());
+		return result;
+	}
+
+
+	@Override
+	public boolean equals(Object obj) {
+		if (this == obj)
+			return true;
+		if (obj == null)
+			return false;
+		if (getClass() != obj.getClass())
+			return false;
+		AlignmentEditorInput other = (AlignmentEditorInput) obj;
+		if (sequenceNode == null) {
+			if (other.sequenceNode != null)
+				return false;
+		} else if (!sequenceNode.equals(other.sequenceNode))
+			return false;
+		return true;
+	}
 }
-- 
2.34.1