iterator = getReadsArea().getAlignmentModel().sequenceIDIterator();
while (iterator.hasNext()) {
diff --git a/eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/handler/AlignmentEditorCopyHandler.java b/eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/handler/AlignmentEditorCopyHandler.java
index 381cf3536..95418e5b2 100644
--- a/eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/handler/AlignmentEditorCopyHandler.java
+++ b/eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/handler/AlignmentEditorCopyHandler.java
@@ -1,11 +1,11 @@
package eu.etaxonomy.taxeditor.molecular.handler;
-import java.util.Map;
-
import info.bioinfweb.libralign.alignmentarea.AlignmentArea;
import info.bioinfweb.libralign.alignmentarea.selection.SelectionModel;
-import info.bioinfweb.libralign.model.AlignmentModelUtils;
+import info.bioinfweb.libralign.model.utils.AlignmentModelUtils;
+
+import java.util.Map;
import org.eclipse.core.commands.ExecutionEvent;
import org.eclipse.swt.dnd.TextTransfer;
@@ -25,8 +25,8 @@ import eu.etaxonomy.taxeditor.molecular.editor.AlignmentEditor;
* nothing will be copied, even if nucleotides are currently selected.
*
* If the selection contains parts of multiple sequence, these are separated by the line separator
- * of the current operating system.
- *
+ * of the current operating system.
+ *
* @author Ben Stöver
* @date 25.08.2015
*/
@@ -36,7 +36,7 @@ public class AlignmentEditorCopyHandler extends AbstractFocusedAlignmentAreaHand
protected void doExecute2(ExecutionEvent event, AlignmentEditor editor, AlignmentArea focusedArea) {
SelectionModel selection = focusedArea.getSelection();
if (!selection.isEmpty()) {
- editor.CLIPBOARD.setContents(new Object[]{AlignmentModelUtils.selectionAsString(focusedArea, false)},
+ editor.CLIPBOARD.setContents(new Object[]{AlignmentModelUtils.selectionAsString(focusedArea, false)},
new Transfer[]{TextTransfer.getInstance()});
}
}
diff --git a/eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/handler/AlignmentEditorPasteHandler.java b/eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/handler/AlignmentEditorPasteHandler.java
index ca037657c..590aab56c 100644
--- a/eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/handler/AlignmentEditorPasteHandler.java
+++ b/eu.etaxonomy.taxeditor.molecular/src/main/java/eu/etaxonomy/taxeditor/molecular/handler/AlignmentEditorPasteHandler.java
@@ -1,16 +1,16 @@
package eu.etaxonomy.taxeditor.molecular.handler;
-import java.util.ArrayList;
-import java.util.List;
-import java.util.Map;
-import java.util.Scanner;
-
import info.bioinfweb.libralign.alignmentarea.AlignmentArea;
import info.bioinfweb.libralign.alignmentarea.order.SequenceOrder;
import info.bioinfweb.libralign.alignmentarea.selection.SelectionModel;
import info.bioinfweb.libralign.model.AlignmentModel;
-import info.bioinfweb.libralign.model.AlignmentModelUtils;
+import info.bioinfweb.libralign.model.utils.AlignmentModelUtils;
+
+import java.util.ArrayList;
+import java.util.List;
+import java.util.Map;
+import java.util.Scanner;
import org.eclipse.core.commands.ExecutionEvent;
import org.eclipse.jface.dialogs.MessageDialog;
@@ -25,7 +25,7 @@ import eu.etaxonomy.taxeditor.molecular.editor.AlignmentEditor;
/**
* Handler that pastes the current contents of the clipboard into an active instance of {@link AlignmentEditor}.
- *
+ *
* @author Ben Stöver
* @date 26.08.2015
*/
@@ -35,12 +35,12 @@ public class AlignmentEditorPasteHandler extends AbstractFocusedAlignmentAreaHan
area.getActionProvider().elongateSequence(sequenceID, area.getSelection().getCursorColumn());
AlignmentModel