taxeditor.git
7 years agomerge-update from trunk
Patric Plitzner [Tue, 23 Sep 2014 13:31:07 +0000 (13:31 +0000)]
merge-update from trunk

7 years agoeu.etaxonomy.taxeditor.product, eu.etaxonomy.taxeditor.feature/feature.xml, eu.etaxon...
Cherian Mathew [Tue, 23 Sep 2014 11:14:59 +0000 (11:14 +0000)]
eu.etaxonomy.taxeditor.product, eu.etaxonomy.taxeditor.feature/feature.xml, eu.etaxonomy.taxeditor.feature.platform/feature.xml : commented out license text to prevent extra popup on update
plugin(_de,_en).properties : added license info to productBlurb used in the About popup
ApplicationWorkbenchWindowAdvisor, IPreferenceKeys, TaxonomicEditorGeneralPreferences : removed preference for allowing update checks on startup as this is already provided by rcp
ApplicationWorkbenchWindowAdvisor, ApplicationUtil, P2Util, UpdateHandler : changed setting of default repositories to make sure that they are set on startup

7 years agosetting unsigned policy to always allow unsigned jars to be updated
Cherian Mathew [Mon, 22 Sep 2014 13:20:35 +0000 (13:20 +0000)]
setting unsigned policy to always allow unsigned jars to be updated

7 years ago - added support for image gallery creation for FieldUnits (#4389)
Patric Plitzner [Mon, 22 Sep 2014 06:49:28 +0000 (06:49 +0000)]
 - added support for image gallery creation for FieldUnits (#4389)
 - added support for DerivateView to MediaView

7 years ago#4389
Patric Plitzner [Wed, 17 Sep 2014 07:48:13 +0000 (07:48 +0000)]
#4389
 - unified "New Image Gallery" command and handler for TaxonEditor and BulkEditor
 - Removed "Add Derived/Field Unit Media" command
 - added interface IPartContentHasMedia to specify that the MediaView should react to selection changes of implementers

7 years agoAdded copy button to popup and context info to the error trace
Cherian Mathew [Tue, 16 Sep 2014 08:37:06 +0000 (08:37 +0000)]
Added copy button to popup and context info to the error trace

7 years ago(no commit message)
Katja Luther [Tue, 16 Sep 2014 07:26:45 +0000 (07:26 +0000)]

7 years ago - removed unused variable
Patric Plitzner [Tue, 16 Sep 2014 07:01:29 +0000 (07:01 +0000)]
 - removed unused variable

7 years ago - avoid possible NPE
Patric Plitzner [Tue, 16 Sep 2014 07:01:12 +0000 (07:01 +0000)]
 - avoid possible NPE

7 years agoadding options to ensure that the product .zip files are not signed
Cherian Mathew [Mon, 15 Sep 2014 14:11:25 +0000 (14:11 +0000)]
adding options to ensure that the product .zip files are not signed

7 years agoadding signing of jars to maven package phase
Cherian Mathew [Mon, 15 Sep 2014 12:38:18 +0000 (12:38 +0000)]
adding signing of jars to maven package phase
P2Util : added snapshot dir to list of hardocded sites
eu.etaxonomy.taxeditor/pom.xml : added signJars and uploadRepo (from parent pom) profiles
pom.xml : removed uploadRepo (from parent pom) profile
feature.xml : removed update configurator plugin as it clashes with simple configurator

7 years ago - externalized plugin.xml
Patric Plitzner [Mon, 15 Sep 2014 07:54:22 +0000 (07:54 +0000)]
 - externalized plugin.xml

7 years ago - fixed possible LazyInitializaitionException in DerivateLabelProvdider
Patric Plitzner [Mon, 15 Sep 2014 07:53:13 +0000 (07:53 +0000)]
 - fixed possible LazyInitializaitionException in DerivateLabelProvdider

7 years agoadded CET to end of build date
Cherian Mathew [Thu, 11 Sep 2014 14:10:11 +0000 (14:10 +0000)]
added CET to end of build date

7 years agoset org.eclipse.update.reconcile to false to avoid logging of bundle already being...
Cherian Mathew [Thu, 11 Sep 2014 12:07:44 +0000 (12:07 +0000)]
set org.eclipse.update.reconcile to false to avoid logging of bundle already being installed errors

7 years agoadded caused by to multistatus error dialog
Cherian Mathew [Thu, 11 Sep 2014 08:45:15 +0000 (08:45 +0000)]
added caused by to multistatus error dialog

7 years agoOpenDefinedTermEditorHandler : changed error dialog to warning since there is no...
Cherian Mathew [Wed, 10 Sep 2014 14:37:43 +0000 (14:37 +0000)]
OpenDefinedTermEditorHandler : changed error dialog to warning since there is no exception
CdmErrorDialog : changed copy item text to avoid confusion
MessagingUtils : cleanup and added MultiStatus errorDialog to solve windows problem (#4416)

7 years ago - removed @Cascade for country in GatheringEvent because DefinedTerms should not...
Patric Plitzner [Wed, 10 Sep 2014 12:52:27 +0000 (12:52 +0000)]
 - removed @Cascade for country in GatheringEvent because DefinedTerms should not be cascaded
 - added new service method to occurence service to find all CDM entities that are not saved via cascading
 - added tests for new method
 - added test for concurrent session saving of terms
 - made use of method for specimen import via DataImportView

7 years agoadded comments
Cherian Mathew [Tue, 9 Sep 2014 15:41:49 +0000 (15:41 +0000)]
added comments

7 years agoadded check for entity being null
Cherian Mathew [Tue, 9 Sep 2014 13:28:32 +0000 (13:28 +0000)]
added check for entity being null

7 years agoadded profile for uploading plugins to update site
Cherian Mathew [Tue, 9 Sep 2014 12:53:12 +0000 (12:53 +0000)]
added profile for uploading plugins to update site

7 years agoeu.etaxonomy.taxeditor.product : updated start levels, added update specific arguments
Cherian Mathew [Tue, 9 Sep 2014 12:51:35 +0000 (12:51 +0000)]
eu.etaxonomy.taxeditor.product : updated start levels, added update specific arguments
feature.xml x 2 : added dependencies for p2 updates
IPreferenceKeys : added the key to allow updates at startup
TaxonomicEditorGeneralPreferences : added checkbox to allow updates at startup

7 years agomappings file for about properties
Cherian Mathew [Tue, 9 Sep 2014 12:48:16 +0000 (12:48 +0000)]
mappings file for about properties

7 years agoP2 update implementation and editor version extraction
Cherian Mathew [Tue, 9 Sep 2014 12:47:39 +0000 (12:47 +0000)]
P2 update implementation and editor version extraction

ApplicationWorkbenchAdvisor : clean up
ApplicationWorkbenchWindowAdvisor : added update of editor to startup
P2Util : replaced older class with a new one which handles background update of editor
UpdateHandler : handles modal update of editor when requested
InstallNewSoftwareHandler, PreloadingRepositoryHandler : handlers for installing new software and preloading repositories (not used yet)
ApplicationUtil : added new methods to retrieve editor version number
TaxonomicEditorPlugin : added new methods for retrieving provisioning elements
build.properties, pom.xml, plugin_en.properties, plugin.properties, plugin_de.properties : setup dynamic properties (version number , build date) to be replaced via maven
plugin.xml, MANIFEST.MF : added new dependencies for p2 update mechanism
p2.inf : deleted since we now setup update repositories programmatically

7 years agoadded new error dialog for operations
Cherian Mathew [Tue, 9 Sep 2014 12:27:38 +0000 (12:27 +0000)]
added new error dialog for operations

7 years ago - bind conversation before saving specimen
Patric Plitzner [Tue, 9 Sep 2014 10:03:46 +0000 (10:03 +0000)]
 - bind conversation before saving specimen

7 years agomerge-update from trunk
Patric Plitzner [Mon, 8 Sep 2014 14:00:23 +0000 (14:00 +0000)]
merge-update from trunk

7 years ago - implemented unstable DataImportView which will replace DataImportEditor
Patric Plitzner [Mon, 8 Sep 2014 13:57:09 +0000 (13:57 +0000)]
 - implemented unstable DataImportView which will replace DataImportEditor

7 years ago - added label to EmptyElement
Patric Plitzner [Mon, 8 Sep 2014 13:34:14 +0000 (13:34 +0000)]
 - added label to EmptyElement
 - added EmptyElement to NonViralNameDetailSection if taxon.getName() is null (fixes #4221)

7 years agochange labels for relationship descriptions #4087
Andreas Müller [Fri, 5 Sep 2014 12:08:09 +0000 (12:08 +0000)]
change labels for relationship descriptions #4087

7 years ago - moved toggle button to the top-right corner of the Media(Specimen)Section (#3339)
Patric Plitzner [Fri, 5 Sep 2014 06:50:13 +0000 (06:50 +0000)]
 - moved toggle button to the top-right corner of the Media(Specimen)Section (#3339)
 - Changed label

7 years agoUpdated version in config files to 3.3.8-SNAPSHOT
edit-jenkins [Thu, 4 Sep 2014 15:32:18 +0000 (15:32 +0000)]
Updated version in config files to 3.3.8-SNAPSHOT

7 years agoUpdated version in config files to 3.3.7
edit-jenkins [Thu, 4 Sep 2014 15:06:51 +0000 (15:06 +0000)]
Updated version in config files to 3.3.7

7 years ago - added full square as replacement for control characterers (#2248)
Patric Plitzner [Thu, 4 Sep 2014 07:23:06 +0000 (07:23 +0000)]
 - added full square as replacement for control characterers (#2248)
 - added flag to TextWithLabelElement to allow multi-line behavior
 - changed description labels (#4087)
 - renamed method

7 years agoRenamed label "Messages" to "Error Log"
Alexander Oppermann [Wed, 3 Sep 2014 15:25:36 +0000 (15:25 +0000)]
Renamed label "Messages" to "Error Log"

7 years ago - added filter button to setEnabled()
Patric Plitzner [Wed, 3 Sep 2014 06:52:15 +0000 (06:52 +0000)]
 - added filter button to setEnabled()

7 years ago - fixed possible ClassCastException
Patric Plitzner [Wed, 3 Sep 2014 06:51:38 +0000 (06:51 +0000)]
 - fixed possible ClassCastException

7 years ago - fixed typo
Patric Plitzner [Mon, 1 Sep 2014 14:04:10 +0000 (14:04 +0000)]
 - fixed typo

7 years ago - implemented functionality to reuse media in MediaView (#2385)
Patric Plitzner [Mon, 1 Sep 2014 08:49:28 +0000 (08:49 +0000)]
 - implemented functionality to reuse media in MediaView (#2385)

7 years ago - fixed removing of control characters (fixes #4373, affects #2248)
Patric Plitzner [Mon, 1 Sep 2014 08:35:52 +0000 (08:35 +0000)]
 - fixed removing of control characters (fixes #4373, affects #2248)
   - added condition to only replace if the string contains control characters
   - cursor will still jump back but only when control characters were removed
 - removed unused method

7 years ago - added javadoc
Patric Plitzner [Mon, 1 Sep 2014 07:52:20 +0000 (07:52 +0000)]
 - added javadoc

7 years ago - renamed interal_selectionChanged() to selectionChanged_internal()
Patric Plitzner [Tue, 26 Aug 2014 09:41:41 +0000 (09:41 +0000)]
 - renamed interal_selectionChanged() to selectionChanged_internal()

7 years ago - moved parsing message section to top of details view (fixes #1659)
Patric Plitzner [Tue, 26 Aug 2014 09:10:19 +0000 (09:10 +0000)]
 - moved parsing message section to top of details view (fixes #1659)

7 years ago - added property tester for context menu entries for media view (#3339)
Patric Plitzner [Tue, 26 Aug 2014 06:50:13 +0000 (06:50 +0000)]
 - added property tester for context menu entries for media view (#3339)

7 years ago - remove control characters from TextFields (fixes #2248)
Patric Plitzner [Tue, 26 Aug 2014 06:04:30 +0000 (06:04 +0000)]
 - remove control characters from TextFields (fixes #2248)

7 years ago - added forceDirty() method to set the BulkEditor dirty when editing in MediaView...
Patric Plitzner [Mon, 25 Aug 2014 16:57:18 +0000 (16:57 +0000)]
 - added forceDirty() method to set the BulkEditor dirty when editing in MediaView #2407
 - TODO: should be replaced with the possibility to set views dirty when we move to Eclipse 4

7 years ago - used native SWT checkBox button to toggle advanced view
Patric Plitzner [Mon, 25 Aug 2014 10:59:03 +0000 (10:59 +0000)]
 - used native SWT checkBox button to toggle advanced view

7 years ago - separated user interface to add media into two classe (#3339)
Patric Plitzner [Mon, 25 Aug 2014 08:29:52 +0000 (08:29 +0000)]
 - separated user interface to add media into two classe (#3339)
 - added it to MediaSpecimenGeneralDetailElement

7 years agoAdded note to default language preference page to inform the user about restarting...
Alexander Oppermann [Mon, 25 Aug 2014 06:55:51 +0000 (06:55 +0000)]
Added note to default language preference page to inform the user about restarting the editor after making changes to the language setting.

7 years agorefactored default language selection methods.
Alexander Oppermann [Mon, 25 Aug 2014 06:45:26 +0000 (06:45 +0000)]
refactored default language selection methods.

7 years agoIndirect dependency from bioinfweb.commons added.
b.stoever [Fri, 22 Aug 2014 17:19:38 +0000 (17:19 +0000)]
Indirect dependency from bioinfweb.commons added.

7 years agoInitial height distribution implemented in AlignmentEditor.
b.stoever [Thu, 21 Aug 2014 09:15:31 +0000 (09:15 +0000)]
Initial height distribution implemented in AlignmentEditor.

7 years ago - generalized simple user interface to add media (#3339)
Patric Plitzner [Thu, 21 Aug 2014 07:52:52 +0000 (07:52 +0000)]
 - generalized simple user interface to add media (#3339)

7 years agoremove logging for DerivedUnitFacadeNotSupportedException as it is handled #3846
Andreas Müller [Wed, 20 Aug 2014 16:23:15 +0000 (16:23 +0000)]
remove logging for DerivedUnitFacadeNotSupportedException as it is handled #3846

7 years agoHandle null object in StoreUtil.getCdmEntity
Andreas Müller [Wed, 20 Aug 2014 15:03:08 +0000 (15:03 +0000)]
Handle null object in StoreUtil.getCdmEntity

7 years ago - added toggle button to simple media user interface (#3339)
Patric Plitzner [Wed, 20 Aug 2014 15:01:46 +0000 (15:01 +0000)]
 - added toggle button to simple media user interface (#3339)

7 years ago - added finally-clause for asynchronous delay flag
Patric Plitzner [Wed, 20 Aug 2014 15:00:07 +0000 (15:00 +0000)]
 - added finally-clause for asynchronous delay flag
 #2754

7 years agoAdded Default Language Selection for the TaxonomicEditor to fix #4358
Alexander Oppermann [Wed, 20 Aug 2014 14:04:41 +0000 (14:04 +0000)]
Added Default Language Selection for the TaxonomicEditor to fix #4358

7 years ago(no commit message)
Katja Luther [Wed, 20 Aug 2014 12:55:54 +0000 (12:55 +0000)]

7 years agoDeleteResult handling in DeleteSynonymOperation
Katja Luther [Wed, 20 Aug 2014 12:55:11 +0000 (12:55 +0000)]
DeleteResult handling in DeleteSynonymOperation

7 years agoFirst pherogram displaying example added to the alignment editor. (Path to test resou...
b.stoever [Wed, 20 Aug 2014 10:09:53 +0000 (10:09 +0000)]
First pherogram displaying example added to the alignment editor. (Path to test resource need to be adjusted.)

7 years agoeclipse preference changes
Cherian Mathew [Tue, 19 Aug 2014 11:16:38 +0000 (11:16 +0000)]
eclipse preference changes

7 years ago - adapted to changes in messaging framework
Patric Plitzner [Tue, 19 Aug 2014 09:26:31 +0000 (09:26 +0000)]
 - adapted to changes in messaging framework

7 years agomerge-update from trunk
Patric Plitzner [Tue, 19 Aug 2014 09:15:06 +0000 (09:15 +0000)]
merge-update from trunk

7 years ago(no commit message)
Katja Luther [Tue, 19 Aug 2014 07:45:55 +0000 (07:45 +0000)]

7 years ago - implemented asynchronous selection changed event for subclasses of AbstractCdmEdit...
Patric Plitzner [Tue, 19 Aug 2014 07:22:46 +0000 (07:22 +0000)]
 - implemented asynchronous selection changed event for subclasses of AbstractCdmEditorViewPart
   - all sub classes must implement internal_selectionChanged() method where the usual selection handling is done
   - the super class invokes internal_selectionChanged() asynchronously
   - this should fix the arbitrary warning of recursive part activation
   - it also prevents double activation which occurred in the DetailsView from time to time

fix for #2754

7 years ago - fixed possible NPE
Patric Plitzner [Tue, 19 Aug 2014 07:07:50 +0000 (07:07 +0000)]
 - fixed possible NPE

7 years ago - added missing @Override
Patric Plitzner [Tue, 19 Aug 2014 07:06:57 +0000 (07:06 +0000)]
 - added missing @Override
 - fixed use of static method

7 years ago(no commit message)
Katja Luther [Mon, 18 Aug 2014 20:34:15 +0000 (20:34 +0000)]

7 years ago - fixed possible IllegalStateException (#4351)
Patric Plitzner [Mon, 18 Aug 2014 14:53:59 +0000 (14:53 +0000)]
 - fixed possible IllegalStateException (#4351)

7 years ago - added null check (fixes #4351)
Patric Plitzner [Mon, 18 Aug 2014 14:38:49 +0000 (14:38 +0000)]
 - added null check (fixes #4351)

7 years ago - fixed persistent saving of media of a MediaSpecimen (#3339)
Patric Plitzner [Mon, 18 Aug 2014 12:57:37 +0000 (12:57 +0000)]
 - fixed persistent saving of media of a MediaSpecimen (#3339)

7 years ago - implemented setFocus() of all EditorParts
Patric Plitzner [Mon, 18 Aug 2014 11:28:24 +0000 (11:28 +0000)]
 - implemented setFocus() of all EditorParts
   - this is to avoid "java.lang.Exception: java.lang.RuntimeException: WARNING: Prevented recursive attempt to activate part"
   - either set the focus to shell or set it to the viewer used

fix for #2754

7 years ago - adapted to interface changes in cdmlib
Patric Plitzner [Mon, 18 Aug 2014 08:28:44 +0000 (08:28 +0000)]
 - adapted to interface changes in cdmlib

7 years ago - added simple user interface to add media (#3339)
Patric Plitzner [Mon, 18 Aug 2014 08:14:39 +0000 (08:14 +0000)]
 - added simple user interface to add media (#3339)

7 years ago - fixed adding of child to parent ICdmFormElement in else clause
Patric Plitzner [Mon, 18 Aug 2014 08:07:39 +0000 (08:07 +0000)]
 - fixed adding of child to parent ICdmFormElement in else clause

7 years agoMessagingUtils : added option for displaying contact message in the error dialog
Cherian Mathew [Fri, 15 Aug 2014 16:14:57 +0000 (16:14 +0000)]
MessagingUtils : added option for displaying contact message in the error dialog
ApplicationWorkbenchAdvisor : using new method with contact message
AbstractBulkEditorInput : added errorDialog for MergeException

7 years agoApplicationWorkbenchAdvisor : added comments
Cherian Mathew [Fri, 15 Aug 2014 15:31:41 +0000 (15:31 +0000)]
ApplicationWorkbenchAdvisor : added comments
EditPasswordElement : Added to make sure user exists in db before changing password
UserDetailElement : Disabled user text field since User is immutable
NewObjectHandler : added non-empty validator for the case of User and Group

7 years agoNew class for logging and dialog functionality
Cherian Mathew [Thu, 14 Aug 2014 10:38:05 +0000 (10:38 +0000)]
New class for logging and dialog functionality

7 years agoMoved all logging and dialog functionality to the new class MessagingUtils.
Cherian Mathew [Thu, 14 Aug 2014 10:32:48 +0000 (10:32 +0000)]
Moved all logging and dialog functionality to the new class MessagingUtils.
Refactoring code to adapt to above change.
Added new custom error dialog - CdmErrorDialog
Added runtime exception handling to the ApplicationWorkbenchAdvisor by adding a custom status handler

7 years agoreintegrated redlist branch into trunk
Alexander Oppermann [Wed, 13 Aug 2014 12:07:41 +0000 (12:07 +0000)]
reintegrated redlist branch into trunk

7 years agoExample object demonstrating pherogram and alignment data to be stored in CDM added.
b.stoever [Tue, 12 Aug 2014 10:35:19 +0000 (10:35 +0000)]
Example object demonstrating pherogram and alignment data to be stored in CDM added.

7 years agoBulkEditorQuery udpate
Andreas Müller [Mon, 11 Aug 2014 13:41:48 +0000 (13:41 +0000)]
BulkEditorQuery udpate

7 years agoupdate ReferenceDetailElement
Andreas Müller [Mon, 11 Aug 2014 13:38:08 +0000 (13:38 +0000)]
update ReferenceDetailElement

7 years agomerge-update from trunk
Patric Plitzner [Mon, 11 Aug 2014 12:28:34 +0000 (12:28 +0000)]
merge-update from trunk

7 years agoadapt to new return type for name authors
Andreas Müller [Fri, 8 Aug 2014 21:30:09 +0000 (21:30 +0000)]
adapt to new return type for name authors

7 years agoadded possibility to show / hide uuid column
Cherian Mathew [Fri, 8 Aug 2014 16:37:26 +0000 (16:37 +0000)]
added possibility to show / hide uuid column
added scrolling to the viewer

7 years agoadapt TransientNameService
Andreas Müller [Thu, 7 Aug 2014 16:52:36 +0000 (16:52 +0000)]
adapt TransientNameService

7 years agoCommenting out single click opening of name editor (ticket 4300)
Cherian Mathew [Thu, 7 Aug 2014 14:44:12 +0000 (14:44 +0000)]
Commenting out single click opening of name editor (ticket 4300)

7 years agoMemberDetailElement : removed member label string
Cherian Mathew [Thu, 7 Aug 2014 09:30:07 +0000 (09:30 +0000)]
MemberDetailElement : removed member label string
EntitySelectionElement : removed " : " suffix to label string when label string is empty

7 years agocorrected behaviour when adding / saving new authorites
Cherian Mathew [Thu, 7 Aug 2014 09:27:08 +0000 (09:27 +0000)]
corrected behaviour when adding / saving new authorites

7 years agoText encoding changed to UTF-8.
b.stoever [Tue, 5 Aug 2014 14:20:42 +0000 (14:20 +0000)]
Text encoding changed to UTF-8.

7 years agomerge-update from trunk
Patric Plitzner [Tue, 5 Aug 2014 12:12:40 +0000 (12:12 +0000)]
merge-update from trunk

7 years ago - fixed bug that showed double or no '&' (#4302)
Patric Plitzner [Tue, 5 Aug 2014 11:46:59 +0000 (11:46 +0000)]
 - fixed bug that showed double or no '&' (#4302)

7 years agoTest version of an AlignmentArea added to AlignmentEditor.
b.stoever [Tue, 5 Aug 2014 09:25:31 +0000 (09:25 +0000)]
Test version of an AlignmentArea added to AlignmentEditor.
Dependencies of LibrAlign added in provisional form.
  During initial development stage you need to check out the following two additional project into your workspace:
  - bioinfweb.commons as "_Lib" from https://secure.bioinfweb.info/Code/svn/commons.java/trunk/main/
  - LibrAlign as "LibrAlign" from https://secure.nefertem.bioinfweb.info/private/svn/LibrAlign/trunk/main/
  (These dependencies will be replaced by JARs after the initial development phase of this branch.)

7 years agomerge-update from trunk
Patric Plitzner [Mon, 4 Aug 2014 12:51:01 +0000 (12:51 +0000)]
merge-update from trunk

7 years agoLockMode issues in transient services
Andreas Müller [Mon, 4 Aug 2014 11:46:15 +0000 (11:46 +0000)]
LockMode issues in transient services

7 years agomerge-update from trunk
Patric Plitzner [Mon, 4 Aug 2014 10:05:09 +0000 (10:05 +0000)]
merge-update from trunk

7 years ago - added empty AlignmentEditor
Patric Plitzner [Mon, 4 Aug 2014 09:42:01 +0000 (09:42 +0000)]
 - added empty AlignmentEditor

7 years agocreating taxeditor branch for LibrAlign integration
Patric Plitzner [Thu, 31 Jul 2014 18:11:02 +0000 (18:11 +0000)]
creating taxeditor branch for LibrAlign integration