taxeditor.git
8 years agowith the fixed compareTo method the TaxonNodeComparator should work (#4114)
Katja Luther [Mon, 17 Mar 2014 12:50:59 +0000 (12:50 +0000)]
with the fixed compareTo method the TaxonNodeComparator should work (#4114)

8 years ago - added isEnabled() method to IEnableableFormElement
Patric Plitzner [Mon, 17 Mar 2014 09:02:41 +0000 (09:02 +0000)]
 - added isEnabled() method to IEnableableFormElement

8 years ago - added missing interface method
Patric Plitzner [Mon, 17 Mar 2014 08:58:10 +0000 (08:58 +0000)]
 - added missing interface method

8 years ago - removed StoreUtil.getCdmEntity() invocation (#4091)
Patric Plitzner [Mon, 17 Mar 2014 08:43:08 +0000 (08:43 +0000)]
 - removed StoreUtil.getCdmEntity() invocation (#4091)

8 years ago - fixed context menu options
Patric Plitzner [Mon, 17 Mar 2014 07:54:29 +0000 (07:54 +0000)]
 - fixed context menu options

8 years ago - implemented EntitySelectionElement for Primer
Patric Plitzner [Mon, 17 Mar 2014 07:51:57 +0000 (07:51 +0000)]
 - implemented EntitySelectionElement for Primer
 - adapted details views with primer selection element

8 years ago - added missing interface method
Patric Plitzner [Mon, 17 Mar 2014 07:50:39 +0000 (07:50 +0000)]
 - added missing interface method

8 years agoimplementing #4120: User always needs to have the right to change password and hidin...
Andreas Kohlbecker [Fri, 14 Mar 2014 13:52:45 +0000 (13:52 +0000)]
implementing  #4120: User always needs to have the right to change password and hiding all user related menu contributions if no user is logged in

8 years agoRevert "#4114 sort order in taxon navigator " to avoid blocking bug
Andreas Kohlbecker [Fri, 14 Mar 2014 13:52:41 +0000 (13:52 +0000)]
Revert "#4114 sort order in taxon navigator " to avoid blocking bug

This reverts commit 1ef7ab55c5d437aba039bc10ee8d81e12f402309.

8 years agoadding missing manifest file
Cherian Mathew [Thu, 13 Mar 2014 21:24:09 +0000 (21:24 +0000)]
adding missing manifest file

8 years agosetting application configuration and boolean remoting flag (bean) in hibernate proxy...
Cherian Mathew [Thu, 13 Mar 2014 20:23:45 +0000 (20:23 +0000)]
setting application configuration and boolean remoting flag (bean) in hibernate proxy classes to differentiate local and remoting

8 years agoafter review final modification for #4115 ('editor' users cannot create new referenc...
Andreas Kohlbecker [Thu, 13 Mar 2014 15:51:44 +0000 (15:51 +0000)]
after review final modification for  #4115 ('editor' users cannot create new references via the reference select list)

8 years agoimplementing #4123 (add idInVocabulary to term labels in editor)
Andreas Kohlbecker [Thu, 13 Mar 2014 15:09:15 +0000 (15:09 +0000)]
implementing #4123 (add idInVocabulary to term labels in editor)

8 years agoremoving unavailable extension eu.etaxonomy.cdm.remote.controller.csv
Andreas Kohlbecker [Thu, 13 Mar 2014 15:09:11 +0000 (15:09 +0000)]
removing unavailable extension eu.etaxonomy.cdm.remote.controller.csv

8 years agoadded remote collection method checks in addition to local for lists and sets
Cherian Mathew [Thu, 13 Mar 2014 15:00:56 +0000 (15:00 +0000)]
added remote collection method checks in addition to local for lists and sets

8 years ago#4114 sort order in taxon navigator
Katja Luther [Thu, 13 Mar 2014 13:24:08 +0000 (13:24 +0000)]
#4114 sort order in taxon navigator

8 years agocatching PermissionDeniedExceptions when only doing a check, so these exceptions...
Andreas Kohlbecker [Thu, 13 Mar 2014 12:39:49 +0000 (12:39 +0000)]
catching PermissionDeniedExceptions when only doing a check, so these exceptions no longer pollute the log

8 years agoavoiding NPE
Andreas Kohlbecker [Thu, 13 Mar 2014 12:39:45 +0000 (12:39 +0000)]
avoiding NPE

8 years agoadded test class for persistent collections and also a base class for configuringsett...
Cherian Mathew [Thu, 13 Mar 2014 09:00:53 +0000 (09:00 +0000)]
added test class for persistent collections and also a base class for configuringsetting up remote configuration.

8 years agoadded call to remoting with correct check
Cherian Mathew [Wed, 12 Mar 2014 14:24:37 +0000 (14:24 +0000)]
added call to remoting with correct check

8 years agofixing #4115 ('editor' users cannot create new references via the reference select...
Andreas Kohlbecker [Tue, 11 Mar 2014 17:47:18 +0000 (17:47 +0000)]
fixing #4115 ('editor' users cannot create new references via the reference select list)

8 years agofixing #4116 (ClassCastException when selecting Euro+Med top level area in Distributi...
Andreas Kohlbecker [Tue, 11 Mar 2014 17:10:09 +0000 (17:10 +0000)]
fixing #4116 (ClassCastException when selecting Euro+Med top level area in DistributionElement details view)

8 years agofixing problem of publish checkbox disabled state being overwritten
Andreas Kohlbecker [Tue, 11 Mar 2014 16:38:15 +0000 (16:38 +0000)]
fixing problem of publish checkbox disabled state being overwritten

8 years ago - refactored selection of DerivateView to be TreeNode
Patric Plitzner [Tue, 11 Mar 2014 07:38:55 +0000 (07:38 +0000)]
 - refactored selection of DerivateView to be TreeNode
 - adapted selection handling
 - restructured derivate hierarchy
  - Amplifications are now a direct child of Sequences
  - the can only be created when having a SingleRead
  - this representation does not affect the cdm structure

8 years ago - fixed refresh problem
Patric Plitzner [Tue, 11 Mar 2014 07:34:50 +0000 (07:34 +0000)]
 - fixed refresh problem

8 years ago - clean code
Patric Plitzner [Mon, 10 Mar 2014 15:01:56 +0000 (15:01 +0000)]
 - clean code

8 years agofixing: #4110 (imlement nicer warning dialogue in Taxon Editor for permission denied...
Andreas Kohlbecker [Mon, 10 Mar 2014 11:43:47 +0000 (11:43 +0000)]
fixing: #4110 (imlement nicer warning dialogue in Taxon Editor for permission denied exception)

8 years agomore details in exception message of StoreUtil.getCdmEntity()
Andreas Kohlbecker [Thu, 6 Mar 2014 17:09:03 +0000 (17:09 +0000)]
more details in exception message of StoreUtil.getCdmEntity()

8 years agodnd support in taxon navigator for Taxonnodes protected regarding user permissions...
Andreas Kohlbecker [Thu, 6 Mar 2014 16:59:40 +0000 (16:59 +0000)]
dnd support in taxon navigator for Taxonnodes protected regarding user permissions - #4055 (action enablement adapts to the users granted authorities)

8 years agoavoiding NPE and other exceptions
Andreas Kohlbecker [Wed, 5 Mar 2014 17:18:31 +0000 (17:18 +0000)]
avoiding NPE and other exceptions

8 years agoupdating project url in pom.xml
Andreas Kohlbecker [Wed, 5 Mar 2014 17:18:26 +0000 (17:18 +0000)]
updating project url in pom.xml

8 years agono longer using a conversation for the login dialog and thus fixing problems after...
Andreas Kohlbecker [Wed, 5 Mar 2014 17:18:25 +0000 (17:18 +0000)]
no longer using a conversation for the login dialog and thus fixing problems after putting wrong credentials

8 years agofixing setEnabled method
Andreas Kohlbecker [Wed, 5 Mar 2014 17:15:22 +0000 (17:15 +0000)]
fixing setEnabled method

8 years ago - removed dummy data from SpecimenImport
Patric Plitzner [Wed, 5 Mar 2014 14:33:12 +0000 (14:33 +0000)]
 - removed dummy data from SpecimenImport

8 years ago - fixed event handling by creating and linking the missing elements
Patric Plitzner [Wed, 5 Mar 2014 14:28:32 +0000 (14:28 +0000)]
 - fixed event handling by creating and linking the missing elements

8 years ago - added missing DNA Quality section
Patric Plitzner [Wed, 5 Mar 2014 12:24:41 +0000 (12:24 +0000)]
 - added missing DNA Quality section

8 years ago - adpated DNA DetailsViews according to current development
Patric Plitzner [Wed, 5 Mar 2014 12:18:55 +0000 (12:18 +0000)]
 - adpated DNA DetailsViews according to current development

8 years ago - renamed getBaseUnit() to baseUnit()
Patric Plitzner [Wed, 5 Mar 2014 12:16:51 +0000 (12:16 +0000)]
 - renamed getBaseUnit() to baseUnit()

8 years ago - added transparency to icons
Patric Plitzner [Wed, 5 Mar 2014 12:16:11 +0000 (12:16 +0000)]
 - added transparency to icons

8 years ago - added util method to get for getting a CDM entity (used in authenication/permissio...
Patric Plitzner [Wed, 5 Mar 2014 07:43:08 +0000 (07:43 +0000)]
 - added util method to get for getting a CDM entity (used in authenication/permission framework)
 - made use of this method where the type of the parameter was too general (like object)
 - made getBaseUnit() of DerivedUnitFacade public

8 years ago - added icons for Amplification, Sequence and SingleRead
Patric Plitzner [Tue, 4 Mar 2014 16:18:28 +0000 (16:18 +0000)]
 - added icons for Amplification, Sequence and SingleRead

8 years ago - added code to show icon for Amplification, Sequence and SingleRead (image files...
Patric Plitzner [Tue, 4 Mar 2014 08:25:39 +0000 (08:25 +0000)]
 - added code to show icon for Amplification, Sequence and SingleRead (image files still missing)
 - removed text fields for media file in dna DetailsViews
 - added contig file in Sequence DetailsView

8 years ago - added cascading save to pherogram (Media) of SingleRead
Patric Plitzner [Mon, 3 Mar 2014 08:48:20 +0000 (08:48 +0000)]
 - added cascading save to pherogram (Media) of SingleRead
 - added media section to DetailsViews for Amplification (gel photo) and SingelRead (pherogram)

8 years agofixing missing text of Group members (User) in details section
Andreas Kohlbecker [Fri, 28 Feb 2014 11:17:31 +0000 (11:17 +0000)]
fixing missing text of Group members (User) in details section

8 years agofix problem with changeSynonymToAcceptedTaxon of a synonym being part of an homotypic...
Katja Luther [Thu, 27 Feb 2014 08:42:33 +0000 (08:42 +0000)]
fix problem with changeSynonymToAcceptedTaxon of a synonym being part of an homotypical group

8 years agoprotecting editing capabilities of names references and authors - #4055 (action...
Andreas Kohlbecker [Wed, 26 Feb 2014 16:25:40 +0000 (16:25 +0000)]
protecting editing capabilities of names references and authors -  #4055 (action enablement adapts to the users granted authorities)

8 years ago - added multi-select(multi-save) to SpecimenImportEditor
Patric Plitzner [Wed, 26 Feb 2014 14:42:42 +0000 (14:42 +0000)]
 - added multi-select(multi-save) to SpecimenImportEditor

8 years agofix: adding missing case statements
Andreas Kohlbecker [Wed, 26 Feb 2014 14:36:46 +0000 (14:36 +0000)]
fix: adding missing case statements

8 years agodisabling edit button if user is allowed to UPDATE & making text elements selectable
Andreas Kohlbecker [Wed, 26 Feb 2014 11:02:39 +0000 (11:02 +0000)]
disabling edit button if user is allowed to UPDATE & making text elements selectable

8 years agoimplementing the CommandHandlerButton and using it as button to open the OpenFeatureT...
Andreas Kohlbecker [Wed, 26 Feb 2014 11:02:33 +0000 (11:02 +0000)]
implementing the CommandHandlerButton and using it as button to open the OpenFeatureTreeEditorWizard - #4055 (action enablement adapts to the users granted authorities)

8 years ago - moved transient interfaces to taxeditor.editor
Patric Plitzner [Wed, 26 Feb 2014 08:39:05 +0000 (08:39 +0000)]
 - moved transient interfaces to taxeditor.editor
 - changed GUI control of DataImportEditor to be a TableViewer
 - made DataImportEditor generic

8 years agominor
Andreas Müller [Tue, 25 Feb 2014 21:36:43 +0000 (21:36 +0000)]
minor

8 years agodisabling remoting calls untill further investigation
Cherian Mathew [Tue, 25 Feb 2014 08:03:44 +0000 (08:03 +0000)]
disabling remoting calls untill further investigation

8 years agominor
Andreas Müller [Mon, 24 Feb 2014 14:48:22 +0000 (14:48 +0000)]
minor

8 years ago - added missing imports
Patric Plitzner [Mon, 24 Feb 2014 07:51:18 +0000 (07:51 +0000)]
 - added missing imports

8 years ago - start conversation before ABCD conversion
Patric Plitzner [Mon, 24 Feb 2014 07:47:38 +0000 (07:47 +0000)]
 - start conversation before ABCD conversion
 - pass conversation to editor

8 years agoadding warning dialog on unavailabel DefinedTermEditor
Andreas Kohlbecker [Fri, 21 Feb 2014 18:16:25 +0000 (18:16 +0000)]
adding warning dialog on unavailabel DefinedTermEditor

8 years agoremoving unused parameter definition
Andreas Kohlbecker [Fri, 21 Feb 2014 18:15:48 +0000 (18:15 +0000)]
removing unused parameter definition

8 years agofixing broken parameter for eu.etaxonomy.taxeditor.store.openDefinedTermEditor command
Andreas Kohlbecker [Fri, 21 Feb 2014 18:15:44 +0000 (18:15 +0000)]
fixing broken parameter for eu.etaxonomy.taxeditor.store.openDefinedTermEditor command

8 years agoRemoteLazyLoadingTest : Creating application configuration programmatically
Cherian Mathew [Thu, 20 Feb 2014 16:37:36 +0000 (16:37 +0000)]
RemoteLazyLoadingTest : Creating application configuration programmatically
AbstractPersistentCollection, AbstractLazyInitializer : Copied aspect code here
CdmApplicationRemoteConfiguration : overriding datasource since it is not required in remoting
remotingApplicationContext : added autowiring config

8 years agoadditional delete functionality to bulkeditor
Katja Luther [Thu, 20 Feb 2014 09:11:21 +0000 (09:11 +0000)]
additional delete functionality to bulkeditor

8 years agominor fixing
Andreas Kohlbecker [Wed, 19 Feb 2014 15:23:33 +0000 (15:23 +0000)]
minor fixing

8 years ago - implemented "Save Specimen" command
Patric Plitzner [Wed, 19 Feb 2014 14:56:58 +0000 (14:56 +0000)]
 - implemented "Save Specimen" command
 - added @Override annotations

8 years agoRolesSourceProvider to enable activities by cdm roles and protecting bulkeditors...
Andreas Kohlbecker [Wed, 19 Feb 2014 14:52:32 +0000 (14:52 +0000)]
RolesSourceProvider to enable activities by cdm roles and protecting bulkeditors and term editors - #4055 (action enablement adapts to the users granted authorities)

8 years agobase implementation and configuration for securing the editor - #4055 (action enablem...
Andreas Kohlbecker [Wed, 19 Feb 2014 14:52:23 +0000 (14:52 +0000)]
base implementation and configuration for securing the editor - #4055 (action enablement adapts to the users granted authorities)

8 years ago.gitignore
Andreas Kohlbecker [Wed, 19 Feb 2014 14:52:09 +0000 (14:52 +0000)]
.gitignore

8 years ago - added "Save Specimen" command to DataImportEditor
Patric Plitzner [Wed, 19 Feb 2014 14:34:27 +0000 (14:34 +0000)]
 - added "Save Specimen" command to DataImportEditor

8 years ago - changed type of BioCaseQuery results from List to Set to filter out duplicates
Patric Plitzner [Wed, 19 Feb 2014 14:32:22 +0000 (14:32 +0000)]
 - changed type of BioCaseQuery results from List to Set to filter out duplicates
  - as saveOrUpdate() for the transient services just adds the derived units to the lists this was necessary

8 years ago - BioCase querying as a separate thread
Patric Plitzner [Tue, 18 Feb 2014 15:00:09 +0000 (15:00 +0000)]
 - BioCase querying as a separate thread

8 years agoupdaed build properties to include source / resource files when packaging with maven
Cherian Mathew [Tue, 18 Feb 2014 12:33:28 +0000 (12:33 +0000)]
updaed build properties to include source / resource files when packaging with maven

8 years agoreverting back config file to make local invocation work
Cherian Mathew [Tue, 18 Feb 2014 11:03:15 +0000 (11:03 +0000)]
reverting back config file to make local invocation work

8 years ago - updated SpecimenImportWizard
Patric Plitzner [Tue, 18 Feb 2014 07:42:22 +0000 (07:42 +0000)]
 - updated SpecimenImportWizard
 - refactored BioCase querying to be a separate job

8 years ago - added preference which shows determination section only for FieldUnits in the...
Patric Plitzner [Tue, 18 Feb 2014 07:40:33 +0000 (07:40 +0000)]
 - added preference which shows determination section only for FieldUnits in the DetailsView

8 years ago - added preference which shows determination section only for FieldUnits in the...
Patric Plitzner [Mon, 17 Feb 2014 14:48:20 +0000 (14:48 +0000)]
 - added preference which shows determination section only for FieldUnits in the DetailsView
 - added missing parameters for SingleRead DetailsView

8 years agofix for invisible description.setTaxon method in Editor
Andreas Müller [Fri, 14 Feb 2014 17:19:20 +0000 (17:19 +0000)]
fix for invisible description.setTaxon method in Editor

8 years agoCdmApplicationRemoteConfiguration : added GeoService and @Component bean name
Cherian Mathew [Fri, 14 Feb 2014 16:53:58 +0000 (16:53 +0000)]
CdmApplicationRemoteConfiguration : added GeoService and @Component bean name
remotingApplicationContext : exclude CdmApplicationDefaultConfiguration from comp scan
remoting_services_security : cosmetic
httpInvokerServiceClients : added editGeoService
config.properties : corrected context path
localApplicationContext.xml : new config file to ease remoting switch
editorApplicationContext : simplified switch to remoting and back

8 years ago - added missing parameters for SingleRead DetailsView
Patric Plitzner [Thu, 13 Feb 2014 12:16:14 +0000 (12:16 +0000)]
 - added missing parameters for SingleRead DetailsView

8 years ago - added option to set text limit for TextWithLabelElement
Patric Plitzner [Thu, 13 Feb 2014 12:15:42 +0000 (12:15 +0000)]
 - added option to set text limit for TextWithLabelElement

8 years agoreverting cdm application / controller refactoring and simply extending the CdmApplic...
Cherian Mathew [Thu, 13 Feb 2014 12:08:30 +0000 (12:08 +0000)]
reverting cdm application / controller refactoring and simply extending the CdmApplicationRemoteConfiguration class
by throwing UnsupportedOperationException for methods that are not supported by remoting

8 years agocorrecting import
Cherian Mathew [Wed, 12 Feb 2014 16:59:16 +0000 (16:59 +0000)]
correcting import

8 years agoremoving aspetcj capability and reverting to default
Cherian Mathew [Wed, 12 Feb 2014 16:58:37 +0000 (16:58 +0000)]
removing aspetcj capability and reverting to default

8 years agochanged package name to be consistent with cdmlib
Cherian Mathew [Wed, 12 Feb 2014 16:54:11 +0000 (16:54 +0000)]
changed package name to be consistent with cdmlib
remotingApplicationContext.xml : cleaning up component scan

8 years agoremoving Transient annotation - not required
Cherian Mathew [Wed, 12 Feb 2014 14:25:59 +0000 (14:25 +0000)]
removing Transient annotation - not required

8 years agorefactoring ICdmApplicationDefaultConfiguration
Cherian Mathew [Wed, 12 Feb 2014 14:19:52 +0000 (14:19 +0000)]
refactoring ICdmApplicationDefaultConfiguration

8 years agorefactoring CdmApplicationConfiguration/Controller to allow for remoting
Cherian Mathew [Wed, 12 Feb 2014 13:02:25 +0000 (13:02 +0000)]
refactoring CdmApplicationConfiguration/Controller to allow for remoting
CdmStoreConnector : added application configuration call for remoting (currently commented)

8 years agoconfig.properties : config for target cdmserver in remoting
Cherian Mathew [Wed, 12 Feb 2014 12:52:34 +0000 (12:52 +0000)]
config.properties : config for target cdmserver in remoting
editorApplicationContext.xml : added (currently commented) config for remoting

8 years agoerging from remoting-1.0 branch
Cherian Mathew [Wed, 12 Feb 2014 12:48:35 +0000 (12:48 +0000)]
erging from remoting-1.0 branch
- adding new confugration / controller classes for remoting
- adding aspect and related aop.xml config file
- added aspect and spring remoting jars
- updated manifest , pom and classpath for the new dependencies

8 years agomove ChangeConceptToSynonym business logic from editor operation to service layer
Katja Luther [Wed, 12 Feb 2014 12:27:53 +0000 (12:27 +0000)]
move ChangeConceptToSynonym business logic from editor operation to service layer

8 years ago - added "Search"-Button to DerivateSearchView
Patric Plitzner [Wed, 12 Feb 2014 12:13:23 +0000 (12:13 +0000)]
 - added "Search"-Button to DerivateSearchView

8 years ago - enabled DerivateType filter in DerivateSearchView
Patric Plitzner [Wed, 12 Feb 2014 11:40:57 +0000 (11:40 +0000)]
 - enabled DerivateType filter in DerivateSearchView

8 years agoremotingApplicationContext : removed load time weaving config remoting-1.0 root/branches/taxeditor/remoting-1.0
Cherian Mathew [Wed, 12 Feb 2014 11:04:35 +0000 (11:04 +0000)]
remotingApplicationContext : removed load time weaving config
AbstractPersistentCollection : reverting to original code
CdmApplicationRemoteController : adding missing method call

8 years agodelete User in bulkeditor
Katja Luther [Wed, 12 Feb 2014 10:39:54 +0000 (10:39 +0000)]
delete User in bulkeditor

8 years agodelete of group in bulkeditor #4054
Katja Luther [Wed, 12 Feb 2014 10:15:56 +0000 (10:15 +0000)]
delete of group in bulkeditor #4054

8 years agomerge from trunk
Cherian Mathew [Wed, 12 Feb 2014 09:10:08 +0000 (09:10 +0000)]
merge from trunk

8 years agoRemoteLazyLoadingTest : cosmetic changes
Cherian Mathew [Wed, 12 Feb 2014 09:09:16 +0000 (09:09 +0000)]
RemoteLazyLoadingTest : cosmetic changes
CdmApplicationRemoteController, CdmApplicationRemoteConfiguration : refactoring

8 years ago - added combo controller to combo field in DerivateSearchView
Patric Plitzner [Wed, 12 Feb 2014 08:36:42 +0000 (08:36 +0000)]
 - added combo controller to combo field in DerivateSearchView

8 years agosolving #4056 (taxeditor responds with nicer dialogue in case a user executes a prohi...
Andreas Kohlbecker [Tue, 11 Feb 2014 16:20:34 +0000 (16:20 +0000)]
solving #4056 (taxeditor responds with nicer dialogue in case a user executes a prohibited operation)

8 years agomerge from trunk
Cherian Mathew [Tue, 11 Feb 2014 15:30:51 +0000 (15:30 +0000)]
merge from trunk

8 years agoadded possibility to switch to remoting
Cherian Mathew [Tue, 11 Feb 2014 15:30:10 +0000 (15:30 +0000)]
added possibility to switch to remoting

8 years agoremotingApplicationContext : removing configuration bean declaration
Cherian Mathew [Tue, 11 Feb 2014 15:28:41 +0000 (15:28 +0000)]
remotingApplicationContext : removing configuration bean declaration
CdmApplicationRemoteController : removed call to init configuration bean via application context
CdmApplicationRemoteDefaultConfiguration : refactoring code to cplit configuration into default / remote