taxeditor.git
7 years agomerge-update from trunk
Patric Plitzner [Tue, 19 Aug 2014 09:15:06 +0000 (09:15 +0000)]
merge-update from trunk

7 years ago(no commit message)
Katja Luther [Tue, 19 Aug 2014 07:45:55 +0000 (07:45 +0000)]

7 years ago - implemented asynchronous selection changed event for subclasses of AbstractCdmEdit...
Patric Plitzner [Tue, 19 Aug 2014 07:22:46 +0000 (07:22 +0000)]
 - implemented asynchronous selection changed event for subclasses of AbstractCdmEditorViewPart
   - all sub classes must implement internal_selectionChanged() method where the usual selection handling is done
   - the super class invokes internal_selectionChanged() asynchronously
   - this should fix the arbitrary warning of recursive part activation
   - it also prevents double activation which occurred in the DetailsView from time to time

fix for #2754

7 years ago - fixed possible NPE
Patric Plitzner [Tue, 19 Aug 2014 07:07:50 +0000 (07:07 +0000)]
 - fixed possible NPE

7 years ago - added missing @Override
Patric Plitzner [Tue, 19 Aug 2014 07:06:57 +0000 (07:06 +0000)]
 - added missing @Override
 - fixed use of static method

7 years ago(no commit message)
Katja Luther [Mon, 18 Aug 2014 20:34:15 +0000 (20:34 +0000)]

7 years ago - fixed possible IllegalStateException (#4351)
Patric Plitzner [Mon, 18 Aug 2014 14:53:59 +0000 (14:53 +0000)]
 - fixed possible IllegalStateException (#4351)

7 years ago - added null check (fixes #4351)
Patric Plitzner [Mon, 18 Aug 2014 14:38:49 +0000 (14:38 +0000)]
 - added null check (fixes #4351)

7 years ago - fixed persistent saving of media of a MediaSpecimen (#3339)
Patric Plitzner [Mon, 18 Aug 2014 12:57:37 +0000 (12:57 +0000)]
 - fixed persistent saving of media of a MediaSpecimen (#3339)

7 years ago - implemented setFocus() of all EditorParts
Patric Plitzner [Mon, 18 Aug 2014 11:28:24 +0000 (11:28 +0000)]
 - implemented setFocus() of all EditorParts
   - this is to avoid "java.lang.Exception: java.lang.RuntimeException: WARNING: Prevented recursive attempt to activate part"
   - either set the focus to shell or set it to the viewer used

fix for #2754

7 years ago - adapted to interface changes in cdmlib
Patric Plitzner [Mon, 18 Aug 2014 08:28:44 +0000 (08:28 +0000)]
 - adapted to interface changes in cdmlib

7 years ago - added simple user interface to add media (#3339)
Patric Plitzner [Mon, 18 Aug 2014 08:14:39 +0000 (08:14 +0000)]
 - added simple user interface to add media (#3339)

7 years ago - fixed adding of child to parent ICdmFormElement in else clause
Patric Plitzner [Mon, 18 Aug 2014 08:07:39 +0000 (08:07 +0000)]
 - fixed adding of child to parent ICdmFormElement in else clause

7 years agoMessagingUtils : added option for displaying contact message in the error dialog
Cherian Mathew [Fri, 15 Aug 2014 16:14:57 +0000 (16:14 +0000)]
MessagingUtils : added option for displaying contact message in the error dialog
ApplicationWorkbenchAdvisor : using new method with contact message
AbstractBulkEditorInput : added errorDialog for MergeException

7 years agoApplicationWorkbenchAdvisor : added comments
Cherian Mathew [Fri, 15 Aug 2014 15:31:41 +0000 (15:31 +0000)]
ApplicationWorkbenchAdvisor : added comments
EditPasswordElement : Added to make sure user exists in db before changing password
UserDetailElement : Disabled user text field since User is immutable
NewObjectHandler : added non-empty validator for the case of User and Group

7 years agoNew class for logging and dialog functionality
Cherian Mathew [Thu, 14 Aug 2014 10:38:05 +0000 (10:38 +0000)]
New class for logging and dialog functionality

7 years agoMoved all logging and dialog functionality to the new class MessagingUtils.
Cherian Mathew [Thu, 14 Aug 2014 10:32:48 +0000 (10:32 +0000)]
Moved all logging and dialog functionality to the new class MessagingUtils.
Refactoring code to adapt to above change.
Added new custom error dialog - CdmErrorDialog
Added runtime exception handling to the ApplicationWorkbenchAdvisor by adding a custom status handler

7 years agoreintegrated redlist branch into trunk
Alexander Oppermann [Wed, 13 Aug 2014 12:07:41 +0000 (12:07 +0000)]
reintegrated redlist branch into trunk

7 years agoExample object demonstrating pherogram and alignment data to be stored in CDM added.
b.stoever [Tue, 12 Aug 2014 10:35:19 +0000 (10:35 +0000)]
Example object demonstrating pherogram and alignment data to be stored in CDM added.

7 years agoBulkEditorQuery udpate
Andreas Müller [Mon, 11 Aug 2014 13:41:48 +0000 (13:41 +0000)]
BulkEditorQuery udpate

7 years agoupdate ReferenceDetailElement
Andreas Müller [Mon, 11 Aug 2014 13:38:08 +0000 (13:38 +0000)]
update ReferenceDetailElement

7 years agomerge-update from trunk
Patric Plitzner [Mon, 11 Aug 2014 12:28:34 +0000 (12:28 +0000)]
merge-update from trunk

7 years agoadapt to new return type for name authors
Andreas Müller [Fri, 8 Aug 2014 21:30:09 +0000 (21:30 +0000)]
adapt to new return type for name authors

7 years agoadded possibility to show / hide uuid column
Cherian Mathew [Fri, 8 Aug 2014 16:37:26 +0000 (16:37 +0000)]
added possibility to show / hide uuid column
added scrolling to the viewer

7 years agoadapt TransientNameService
Andreas Müller [Thu, 7 Aug 2014 16:52:36 +0000 (16:52 +0000)]
adapt TransientNameService

7 years agoCommenting out single click opening of name editor (ticket 4300)
Cherian Mathew [Thu, 7 Aug 2014 14:44:12 +0000 (14:44 +0000)]
Commenting out single click opening of name editor (ticket 4300)

7 years agoMemberDetailElement : removed member label string
Cherian Mathew [Thu, 7 Aug 2014 09:30:07 +0000 (09:30 +0000)]
MemberDetailElement : removed member label string
EntitySelectionElement : removed " : " suffix to label string when label string is empty

7 years agocorrected behaviour when adding / saving new authorites
Cherian Mathew [Thu, 7 Aug 2014 09:27:08 +0000 (09:27 +0000)]
corrected behaviour when adding / saving new authorites

7 years agoText encoding changed to UTF-8.
b.stoever [Tue, 5 Aug 2014 14:20:42 +0000 (14:20 +0000)]
Text encoding changed to UTF-8.

7 years agomerge-update from trunk
Patric Plitzner [Tue, 5 Aug 2014 12:12:40 +0000 (12:12 +0000)]
merge-update from trunk

7 years ago - fixed bug that showed double or no '&' (#4302)
Patric Plitzner [Tue, 5 Aug 2014 11:46:59 +0000 (11:46 +0000)]
 - fixed bug that showed double or no '&' (#4302)

7 years agoTest version of an AlignmentArea added to AlignmentEditor.
b.stoever [Tue, 5 Aug 2014 09:25:31 +0000 (09:25 +0000)]
Test version of an AlignmentArea added to AlignmentEditor.
Dependencies of LibrAlign added in provisional form.
  During initial development stage you need to check out the following two additional project into your workspace:
  - bioinfweb.commons as "_Lib" from https://secure.bioinfweb.info/Code/svn/commons.java/trunk/main/
  - LibrAlign as "LibrAlign" from https://secure.nefertem.bioinfweb.info/private/svn/LibrAlign/trunk/main/
  (These dependencies will be replaced by JARs after the initial development phase of this branch.)

7 years agomerge-update from trunk
Patric Plitzner [Mon, 4 Aug 2014 12:51:01 +0000 (12:51 +0000)]
merge-update from trunk

7 years agoLockMode issues in transient services
Andreas Müller [Mon, 4 Aug 2014 11:46:15 +0000 (11:46 +0000)]
LockMode issues in transient services

7 years agomerge-update from trunk
Patric Plitzner [Mon, 4 Aug 2014 10:05:09 +0000 (10:05 +0000)]
merge-update from trunk

7 years ago - added empty AlignmentEditor
Patric Plitzner [Mon, 4 Aug 2014 09:42:01 +0000 (09:42 +0000)]
 - added empty AlignmentEditor

7 years agocreating taxeditor branch for LibrAlign integration
Patric Plitzner [Thu, 31 Jul 2014 18:11:02 +0000 (18:11 +0000)]
creating taxeditor branch for LibrAlign integration

7 years agoadaption for error handling of delete methods
Katja Luther [Wed, 30 Jul 2014 12:09:55 +0000 (12:09 +0000)]
adaption for error handling of delete methods

7 years agoremoved style parameter for combobox. Quick fix for ticket #4289. Needs to be reviewed.
Alexander Oppermann [Wed, 16 Jul 2014 09:29:46 +0000 (09:29 +0000)]
removed style parameter for combobox. Quick fix for ticket #4289. Needs to be reviewed.

7 years agocreating new instance of key statement with existing text in the case of copy/paste
Cherian Mathew [Fri, 11 Jul 2014 13:48:29 +0000 (13:48 +0000)]
creating new instance of key statement with existing text in the case of copy/paste

7 years agorename getByIdInVocabulary
Andreas Müller [Wed, 9 Jul 2014 15:44:16 +0000 (15:44 +0000)]
rename getByIdInVocabulary

7 years agoUpdated version in config files to 3.3.7-SNAPSHOT
edit-jenkins [Tue, 8 Jul 2014 13:34:52 +0000 (13:34 +0000)]
Updated version in config files to 3.3.7-SNAPSHOT

7 years agoUpdated version in config files to 3.3.6
edit-jenkins [Tue, 8 Jul 2014 13:20:37 +0000 (13:20 +0000)]
Updated version in config files to 3.3.6

7 years agoadapting TransientTermService to code cleaning in TermService
Andreas Kohlbecker [Tue, 8 Jul 2014 07:52:36 +0000 (07:52 +0000)]
adapting TransientTermService to code cleaning in TermService

7 years agoignoring bin folder in eu.etaxonomy.taxeditor.cdmlib
Andreas Kohlbecker [Tue, 8 Jul 2014 07:52:33 +0000 (07:52 +0000)]
ignoring bin folder in eu.etaxonomy.taxeditor.cdmlib

7 years ago - generalized adding MediaSpecimen in DerivateView
Patric Plitzner [Thu, 3 Jul 2014 13:36:19 +0000 (13:36 +0000)]
 - generalized adding MediaSpecimen in DerivateView

7 years ago - added support for term retrieval by TermVocabulary
Patric Plitzner [Thu, 3 Jul 2014 12:32:59 +0000 (12:32 +0000)]
 - added support for term retrieval by TermVocabulary
 - adapted MediaSpecimen DetailsView

7 years ago - reload last entered access point in wizard space
Patric Plitzner [Thu, 3 Jul 2014 08:36:58 +0000 (08:36 +0000)]
 - reload last entered access point in wizard space
 - added validation to access point text field

7 years ago - reload last entered access point in wizard space
Patric Plitzner [Thu, 3 Jul 2014 08:36:10 +0000 (08:36 +0000)]
 - reload last entered access point in wizard space
 - added validation to access point text field

8 years agoCdmServiceCacher : Added class to load / cache CDM entities using services
Cherian Mathew [Fri, 27 Jun 2014 09:57:30 +0000 (09:57 +0000)]
CdmServiceCacher : Added class to load / cache CDM entities using services
remotingApplicationContext : updated cacher bean config
httpInvokerServiceClients : removed unnecessary loading of remote config
CdmServiceCacherTest : added cacher test

8 years agoimplementing findWithoutFlush method in transient services
Cherian Mathew [Thu, 26 Jun 2014 15:22:06 +0000 (15:22 +0000)]
implementing findWithoutFlush method in transient services

8 years agofix delete polytomous key node
Katja Luther [Thu, 26 Jun 2014 08:51:46 +0000 (08:51 +0000)]
fix delete polytomous key node

8 years agofix a warning "Prevented recursive attempt to activate part..."
Katja Luther [Thu, 26 Jun 2014 08:37:25 +0000 (08:37 +0000)]
fix a warning "Prevented recursive attempt to activate part..."

8 years agoupdating ehcache to 2.6.9
Cherian Mathew [Wed, 25 Jun 2014 17:24:00 +0000 (17:24 +0000)]
updating ehcache to 2.6.9

8 years agoadded PostFix to memento to distinguish between remote and data source
Cherian Mathew [Wed, 25 Jun 2014 15:34:13 +0000 (15:34 +0000)]
added PostFix to memento to distinguish between remote and data source

8 years agoreplaced static term initialisation methods with newly added cdmCacher driven methods
Cherian Mathew [Wed, 25 Jun 2014 15:33:15 +0000 (15:33 +0000)]
replaced static term initialisation methods with newly added cdmCacher driven methods

8 years agoremotingApplicationContext : added CdmCacher as bean to be initialised
Cherian Mathew [Wed, 25 Jun 2014 15:15:10 +0000 (15:15 +0000)]
remotingApplicationContext : added CdmCacher as bean to be initialised
META-INF/MANIFEST.MF, .classpath, lib/ehcache-core-2.4.3.jar, lib/ehcache-core-2.6.9.jar: replaced ehcache-core-2.4.3 with ehcache-core-2.6.9 for the CdmCacher.
It seems that even though hibernate-ehcache-4.1.10.Final is embedded with ehcache-core-2.4.3, it is compatible with ehcache-core-2.6.9 according to http://architects.dzone.com/articles/hibernate-4-and-ehcache-higher.

8 years agoimproved handling for missing representation for certain language #4249
Andreas Müller [Tue, 24 Jun 2014 14:52:32 +0000 (14:52 +0000)]
improved handling for missing representation for certain language #4249

8 years ago#4244 fixed
Katja Luther [Tue, 24 Jun 2014 12:26:43 +0000 (12:26 +0000)]
#4244 fixed

8 years agoopen Taxonpage with single click in taxonnavigator
Katja Luther [Tue, 24 Jun 2014 09:44:50 +0000 (09:44 +0000)]
open Taxonpage with single click in taxonnavigator

8 years ago(no commit message)
Katja Luther [Tue, 24 Jun 2014 08:55:24 +0000 (08:55 +0000)]

8 years agofix #4249
Katja Luther [Tue, 24 Jun 2014 08:52:59 +0000 (08:52 +0000)]
fix #4249

8 years agoskip the dialog for setting the default nomenclatural code. The default is the botani...
Katja Luther [Tue, 24 Jun 2014 07:49:27 +0000 (07:49 +0000)]
skip the dialog for setting the default nomenclatural code. The default is the botanical code.

8 years agominor
Katja Luther [Thu, 19 Jun 2014 13:25:51 +0000 (13:25 +0000)]
minor

8 years ago- not running imports and exports deleted from menu
Katja Luther [Thu, 19 Jun 2014 13:07:54 +0000 (13:07 +0000)]
- not running imports and exports deleted from menu
- preferences for concept relations fixed
- open taxon editor with one click in taxon navigator

8 years ago - removed debug output
Patric Plitzner [Thu, 19 Jun 2014 12:39:11 +0000 (12:39 +0000)]
 - removed debug output
 - made DerivateLabelProvider use occurrence service

8 years ago - fixed class cast exception
Patric Plitzner [Thu, 19 Jun 2014 12:38:25 +0000 (12:38 +0000)]
 - fixed class cast exception

8 years ago - removed branch code from trunk
Patric Plitzner [Thu, 19 Jun 2014 07:45:46 +0000 (07:45 +0000)]
 - removed branch code from trunk

8 years ago - saved last parameters entered for specimen search
Patric Plitzner [Thu, 19 Jun 2014 07:08:47 +0000 (07:08 +0000)]
 - saved last parameters entered for specimen search

8 years ago - fixed potential NPE
Patric Plitzner [Thu, 19 Jun 2014 07:06:57 +0000 (07:06 +0000)]
 - fixed potential NPE

8 years ago - commented workbenchShutdown() content
Patric Plitzner [Wed, 18 Jun 2014 13:37:25 +0000 (13:37 +0000)]
 - commented workbenchShutdown() content

8 years ago - removed TextReadOnly (#4254)
Patric Plitzner [Wed, 18 Jun 2014 13:34:58 +0000 (13:34 +0000)]
 - removed TextReadOnly (#4254)
  - just used a Text field with "editable" flag set to false
 - added dummy title cache text as section header
  - just showing the first 10 characters

8 years agoeditor changes for red list project (datasource view and create new datasource from...
Katja Luther [Wed, 18 Jun 2014 12:16:35 +0000 (12:16 +0000)]
editor changes for red list project (datasource view and create new datasource from file menu)

8 years ago - added section for "Original Label Data" to DetailsView (#4254)
Patric Plitzner [Wed, 18 Jun 2014 07:14:53 +0000 (07:14 +0000)]
 - added section for "Original Label Data" to DetailsView (#4254)

8 years ago - added java doc
Patric Plitzner [Wed, 18 Jun 2014 07:09:48 +0000 (07:09 +0000)]
 - added java doc

8 years ago - fixed potential session exceptions during closing/saving
Patric Plitzner [Wed, 18 Jun 2014 07:08:36 +0000 (07:08 +0000)]
 - fixed potential session exceptions during closing/saving

8 years ago - changed error dialog text
Patric Plitzner [Wed, 18 Jun 2014 07:07:42 +0000 (07:07 +0000)]
 - changed error dialog text

8 years ago - added "Detail Image" icon to ImageResources
Patric Plitzner [Wed, 18 Jun 2014 07:06:06 +0000 (07:06 +0000)]
 - added "Detail Image" icon to ImageResources

8 years agofix idInVocabulary #4243
Andreas Müller [Tue, 17 Jun 2014 14:20:36 +0000 (14:20 +0000)]
fix idInVocabulary #4243

8 years ago - added icon for "Detail Image"
Patric Plitzner [Tue, 17 Jun 2014 14:09:22 +0000 (14:09 +0000)]
 - added icon for "Detail Image"

8 years ago - added feedback if drag&drop in DerivateVie does not work
Patric Plitzner [Tue, 17 Jun 2014 14:09:04 +0000 (14:09 +0000)]
 - added feedback if drag&drop in DerivateVie does not work

8 years ago - added specimen scan icon
Patric Plitzner [Tue, 17 Jun 2014 13:22:10 +0000 (13:22 +0000)]
 - added specimen scan icon
 - save kindOfUnit

8 years ago - added "Published in" parameter to MediaSpecimen DetailsView (#4239)
Patric Plitzner [Tue, 17 Jun 2014 12:22:28 +0000 (12:22 +0000)]
 - added "Published in" parameter to MediaSpecimen DetailsView (#4239)

8 years ago - added missing parameters to MediaSpecimen DetailsView (#4239)
Patric Plitzner [Tue, 17 Jun 2014 07:27:02 +0000 (07:27 +0000)]
 - added missing parameters to MediaSpecimen DetailsView (#4239)

8 years agoupdate New menu in TaxEditor
Andreas Müller [Mon, 16 Jun 2014 15:30:30 +0000 (15:30 +0000)]
update New menu in TaxEditor

8 years agoupdate New menu in TaxEditor
Andreas Müller [Mon, 16 Jun 2014 15:23:15 +0000 (15:23 +0000)]
update New menu in TaxEditor

8 years agoRemoved deleted command classes from plugin.xml
Patric Plitzner [Mon, 16 Jun 2014 09:44:16 +0000 (09:44 +0000)]
Removed deleted command classes from plugin.xml

8 years ago - refactored DataImportEditor context menu
Patric Plitzner [Mon, 16 Jun 2014 09:41:09 +0000 (09:41 +0000)]
 - refactored DataImportEditor context menu
   - removed extension point in plugin.xml
   - added dynamic context menu

8 years ago - fixed potential hibernate exception when trying to close the editor (check if...
Patric Plitzner [Mon, 16 Jun 2014 09:39:02 +0000 (09:39 +0000)]
 - fixed potential hibernate exception when trying to close the editor (check if conversation is bound before closing it)

8 years ago - removed unnecessary code
Patric Plitzner [Mon, 16 Jun 2014 09:29:24 +0000 (09:29 +0000)]
 - removed unnecessary code

8 years ago - added functionality to determination section to add determinations to FieldUnits...
Patric Plitzner [Mon, 16 Jun 2014 09:28:23 +0000 (09:28 +0000)]
 - added functionality to determination section to add determinations to FieldUnits also (#4252)

8 years ago - added functionality to filter assigned specimens in the DerivateSearchView (fixes...
Patric Plitzner [Mon, 16 Jun 2014 08:57:24 +0000 (08:57 +0000)]
 - added functionality to filter assigned specimens in the DerivateSearchView (fixes #4252)

8 years ago - add placeholder for Media label
Patric Plitzner [Mon, 16 Jun 2014 08:55:02 +0000 (08:55 +0000)]
 - add placeholder for Media label

8 years ago - list "Specimen Details" second in DetailsView (only for campanula, fixes #4235)
Patric Plitzner [Mon, 16 Jun 2014 08:53:12 +0000 (08:53 +0000)]
 - list "Specimen Details" second in DetailsView (only for campanula, fixes #4235)

8 years ago - added new dynamic context menu for DerivateSearchView
Patric Plitzner [Wed, 11 Jun 2014 15:16:30 +0000 (15:16 +0000)]
 - added new dynamic context menu for DerivateSearchView
 - cleaned up code

8 years ago - fixed comment
Patric Plitzner [Wed, 11 Jun 2014 07:46:20 +0000 (07:46 +0000)]
 - fixed comment

8 years ago - fixed TransientObjectException when adding and saving a scope for a TaxonDescripti...
Patric Plitzner [Wed, 11 Jun 2014 07:28:56 +0000 (07:28 +0000)]
 - fixed TransientObjectException when adding and saving a scope for a TaxonDescription (fixes #2607)
   - made use of AbstractUnboundEntityCollectionsection
   - a DefinedTerm will not be created but selected from a list of existing ones

8 years ago - added conversation/session support to DerivateLabelProvider
Patric Plitzner [Wed, 11 Jun 2014 07:23:48 +0000 (07:23 +0000)]
 - added conversation/session support to DerivateLabelProvider
  - GUI widgets using the provider need to provide a conversation/session to avoid LazyInitializationException

8 years ago(no commit message)
Katja Luther [Wed, 11 Jun 2014 07:23:10 +0000 (07:23 +0000)]

8 years ago - set CdmFormFactory.createTermComboElement() to deprecated
Patric Plitzner [Tue, 10 Jun 2014 11:56:25 +0000 (11:56 +0000)]
 - set CdmFormFactory.createTermComboElement() to deprecated
 - replaced (almost) all uses of the method with CdmFormFactory.createDefinedTermComboElement which works with TermType instead of classes