Cherian Mathew [Mon, 9 Mar 2015 10:00:44 +0000 (10:00 +0000)]
httpInvokerServiceClients.xml : set 'CdmServiceRequestExecutor' class as default for all services
ICdmEntitySession, CdmEntitySession, MockCdmEntitySession : added method to update session
ICdmEntitySessionManager, CdmEntitySessionManager, MockCdmEntitySessionManager : added methods to set active session, dispose and update sessions
ProxyUtils : added utility method
EntityCacherDebugResult : corrected method to determine cache corresponding to entity
CdmTransientEntityCacher : corrected put method
CacheLoader : optimised recursive call
CdmServiceCacher : corrected methods to get from cache and load
CdmServiceRequestExecutor : added update result return calls to load
Cherian Mathew [Mon, 2 Mar 2015 09:21:23 +0000 (09:21 +0000)]
AbstractPersistentCollection : fixed loading of collection
MockCdmEntitySessionManager, MockCdmEntitySession, ICdmEntitySessionManager, ICdmEntitySession, CdmEntitySessionManager,
CdmEntitySession : added new load method with choice to update client object graph
TermServiceRequestExecutor : using cacher instead of cache
ICachedCommonService, CachedCommonServiceImpl, ProxyUtils : moved utility methods to utility class
CdmServiceRequestExecutor : updating client object graph when calling merge
EntityCacherDebugResult : corrections for output string
CdmTransientEntityCacher : corrected cache configuration, added load methods with update choice, added service cacher check before put
CacheLoader : checking in recursive call if collection and maps are already visited
CdmRemotingException : added constructor with exception as argument
CdmServiceCacher : corrected cache configuration and loading of entities from default cache
Cherian Mathew [Mon, 2 Mar 2015 09:06:34 +0000 (09:06 +0000)]
merge from trunk
Cherian Mathew [Mon, 2 Mar 2015 08:38:16 +0000 (08:38 +0000)]
made up-to-date with service layer changes
Cherian Mathew [Wed, 25 Feb 2015 09:21:13 +0000 (09:21 +0000)]
added custom executor for common service
Cherian Mathew [Mon, 23 Feb 2015 08:51:59 +0000 (08:51 +0000)]
ICachedCommonService, CachedCommonServiceImpl : moved class to service package
CdmApplicationRemoteConfiguration, AbstractPersistentCollection, AbstractLazyInitializer : refactored package of CachedCommonService
CdmServiceRequestExecutor : added code for intercepting all services and loading returned objects into current session
httpInvokerServiceClients : testing the CdmServiceRequestExecutor with taxon node service
CdmTransientEntityCacher, CdmServiceCacher : dividing cached objects correctly between session cache and default cache
remotingApplicationContext.xml : added service package to component scan
Cherian Mathew [Thu, 19 Feb 2015 16:42:15 +0000 (16:42 +0000)]
OpenInspectSessionsHandler : handler for opening the inspect session dialog
CacheLoader : moved recursive logic from cdm transient cacher to new class
CdmServiceCacher : now uses CacheLoader to recursively load entities
CdmTransientEntityCacher : moved recursive logic from cdm transient cacher to new class and corrected caching issues
EntityCacherDebugResult : corrected recursion and added getter method for debug output
CdmEntitySessionManager : now sets active session to null when it is disposed
remotingApplicationContext.xml : corrected exclude
AbstractUtility : new utility method to execute handler
InspectSessionsDialog : added debug text info and cosmetic changes
SessionsViewPart : now opens inspect sessions dialog on button push
Cherian Mathew [Tue, 17 Feb 2015 15:46:12 +0000 (15:46 +0000)]
implemented new method in interface
Cherian Mathew [Tue, 17 Feb 2015 15:45:47 +0000 (15:45 +0000)]
CdmTransientEntityCacher, EntityCacherDebugResult : moved debug methods to debug result class
ProxyUtils : new class for util methods to do with hibernate proxy objects
ICdmEntitySessionEnabled, CdmEntitySessionInput, PolytomousKeyEditorInput, TaxonNameEditor, PolytomousKeyViewPart, TaxonNavigator, AbstractCdmViewPart, MultiPageTaxonEditor : Added getRootEntities method
CdmEntitySession, ICdmEntitySession : added new debug methods
InspectSessionsDialog : new dialog to inspect session entities
Cherian Mathew [Tue, 17 Feb 2015 11:43:25 +0000 (11:43 +0000)]
CdmRemoteCacheManager : added cache getter methods
CdmTransientEntityCacher, CdmEntitySession, CdmEntitySessionManager, ICdmEntitySession, ICdmEntitySessionManager, ICdmEntitySessionManagerObserver, MockCdmEntitySession, MockCdmEntitySessionManager , eu.etaxonomy.taxeditor.cdmlib/src/main/resources/cdmlib-ehcache.xml : added statistics config , getter method for live stats and observer to update when sessions are bound and disposed
eu.etaxonomy.taxeditor.store/plugin.xml, SessionsViewPart : added new sessions debug view
MatchStrategyConfigurator : moved to cdmlib
ParseHandler, AbstractMatchingPreferences, NonViralNameMatchingPreference, ReferenceMatchingPreference, TeamOrPersonMatchingPreference : refactored after removal of MatchStrategyConfigurator replaced by enum MatchStrategy
Cherian Mathew [Thu, 12 Feb 2015 08:47:26 +0000 (08:47 +0000)]
CdmTransientEntityCacher : overriding cache field only in the case of initialised cdm entity
CdmEntitySession, ICdmEntitySession, MockCdmEntitySession : added update + delete methods
DeleteSynonymOperation, MoveFactualDataHandler : changed service call to uuid one
ChangeAcceptedTaxonToSynonymOperation, DeleteOperation, MoveTaxonOperation : calling newly added session update , insert delete methods
Cherian Mathew [Wed, 11 Feb 2015 13:08:39 +0000 (13:08 +0000)]
MultiPageTaxonEditor : added cdm entity session capabilities to update and register data changes
TaxonNavigator, TaxonNavigatorDataChangeBehavior : added refreshing of specific objects
MoveFactualDataHandler : moved business logic to service call using uuids
AbstractPersistentPostOperation : refactoring
Cherian Mathew [Wed, 11 Feb 2015 13:03:51 +0000 (13:03 +0000)]
CdmModelCacher : added recursive search in super classes
CdmTransientEntityCacher : corrected caching
EntityCacherDebugResult : new debug result object
CdmEntitySession, ICdmEntitySession, MockCdmEntitySession : added debug method
CdmEntitySessionInput : new super class for editor input objects
TaxonEditorInput : refactored and made sub class of CdmEntitySessionInput
DeleteNodeOperation : using new uuid service methods
TaxonNameEditor : removed unnecessary service call to retrieve taxon
TaxonLinkHelper : removed unnecessary second call to initialise input
AbstractCdmViewPart : now implements ISessionEnabled
Cherian Mathew [Thu, 5 Feb 2015 09:42:18 +0000 (09:42 +0000)]
refactoring and added tests
Cherian Mathew [Thu, 5 Feb 2015 09:41:05 +0000 (09:41 +0000)]
NewTaxonNodeWizard : replaced saveOrUpdate with merge for remoting
AbstractPersistentPostOperation : added ICdmEntitySessionEnabled to constructor
RemotingLoginDialog : added functionality to directly connect to local dev eclipse cdmserver if vm arg is present
Cherian Mathew [Thu, 5 Feb 2015 09:38:33 +0000 (09:38 +0000)]
DeleteOperation, EditClassificationOperation, CreateClassification, CreatePolytomousKey, CreateTaxonNode : added ICdmEntitySessionEnabled to constructor
ChangeAcceptedTaxonToSynonymOperation / ChangeAcceptedTaxonToSynonymHandler, MoveTaxonOperation / MoveTaxonHandler, DeleteHandler , TaxonNavigator, Root : made cdm entity session aware
Cherian Mathew [Thu, 5 Feb 2015 09:28:09 +0000 (09:28 +0000)]
MoveDescriptionToOtherTaxonOperation, MultiPageTaxonEditor, ChangeSynonymToAcceptedTaxonHandler, DeleteTaxonBaseHandler, ChangeSynonymToAcceptedTaxonOperation, DeleteTaxonBaseOperation, DeleteTaxonOperation, MoveDescriptionToOtherTaxonHandler : indentation
PolytomousKeyEditorInput, TaxonNameEditor : implements ICdmEntitySessionEnabled
Cherian Mathew [Thu, 5 Feb 2015 09:18:43 +0000 (09:18 +0000)]
CdmTransientEntityCacher : comments and cleanup
MockCdmEntitySessionManager, MockCdmEntitySession : implementing new interface methods
renamed ISessionEventListener to ICdmEntitySessionEnabled
ICdmEntitySession, CdmEntitySession : added methods to register session observer and add change events
ICdmEntitySessionManager, CdmEntitySessionManager : added getActiveSession method
CdmServerInfo :: added possiblity to connect directly to dev eclipse cdm server
Cherian Mathew [Tue, 3 Feb 2015 09:49:59 +0000 (09:49 +0000)]
ApplicationUtil : Added 'Remoting' to title
CdmTransientEntityCacher : corrected recursive call for delete functionality
RemotingLoginDialog : Added refresh functionality
PolytomousKeyTest : updated test data and added tests for delete functionality
Cherian Mathew [Mon, 2 Feb 2015 15:43:44 +0000 (15:43 +0000)]
reverting incorrect commit
Cherian Mathew [Mon, 2 Feb 2015 15:42:21 +0000 (15:42 +0000)]
added h2 db to resources and delete test to test class
Cherian Mathew [Mon, 2 Feb 2015 15:40:56 +0000 (15:40 +0000)]
cleaned up lib dir and updated unitils version
CdmAuthenticatedHttpInvokerRequestExecutor : custom authentication executor (not used for now)
MockCdmEntitySession : mock session for stand-alone editor
Cherian Mathew [Mon, 2 Feb 2015 15:18:39 +0000 (15:18 +0000)]
merge from trunk
Katja Luther [Thu, 29 Jan 2015 12:22:13 +0000 (12:22 +0000)]
#4625
Katja Luther [Thu, 29 Jan 2015 11:58:55 +0000 (11:58 +0000)]
Katja Luther [Thu, 29 Jan 2015 10:59:50 +0000 (10:59 +0000)]
Katja Luther [Thu, 29 Jan 2015 10:58:33 +0000 (10:58 +0000)]
factual data for bulkeditor, improving referencing objects view, make delete in bulkeditor visible for synonyms
Cherian Mathew [Thu, 29 Jan 2015 10:17:48 +0000 (10:17 +0000)]
merge from trunk
Alexander Oppermann [Thu, 29 Jan 2015 08:58:47 +0000 (08:58 +0000)]
Extend TransientClassificationService to be compliant with CdmLib
Alexander Oppermann [Thu, 29 Jan 2015 08:57:19 +0000 (08:57 +0000)]
Fix menues, added check if connected to DB
Patric Plitzner [Wed, 28 Jan 2015 14:29:03 +0000 (14:29 +0000)]
- added TaxonDeletionConfigurator to delete operations
Patric Plitzner [Wed, 28 Jan 2015 14:27:45 +0000 (14:27 +0000)]
- moved refresh out of for-loop
Cherian Mathew [Wed, 28 Jan 2015 13:26:36 +0000 (13:26 +0000)]
merge from trunk
Patric Plitzner [Tue, 27 Jan 2015 14:31:35 +0000 (14:31 +0000)]
- updated deep delete icon
Patric Plitzner [Tue, 27 Jan 2015 12:56:59 +0000 (12:56 +0000)]
- adder swagger annotations to build path
Patric Plitzner [Tue, 27 Jan 2015 12:09:38 +0000 (12:09 +0000)]
- delete description CDM entity when invoking Delete*DescriptionOperation (fixes #4605)
Patric Plitzner [Tue, 27 Jan 2015 10:56:52 +0000 (10:56 +0000)]
- error handling for report file
Patric Plitzner [Tue, 27 Jan 2015 10:56:06 +0000 (10:56 +0000)]
- fixed unnecessary double checking
Patric Plitzner [Tue, 27 Jan 2015 10:53:12 +0000 (10:53 +0000)]
- added double-click functionality for IndividualsAsscociations which opens the clicked specimen in the DerivateEditor
Cherian Mathew [Tue, 27 Jan 2015 09:37:13 +0000 (09:37 +0000)]
editorApplicationContext : reverted stand-alone app context conf
RemotingLoginDialog : updated dialog with server fetch
Cherian Mathew [Tue, 27 Jan 2015 09:35:57 +0000 (09:35 +0000)]
updated current tests and added new ones
Cherian Mathew [Tue, 27 Jan 2015 09:34:43 +0000 (09:34 +0000)]
MANIFEST.MF : New apache http client packages added
CdmServerInfo : changed name and added inner class for cdm instance
httpInvokerServiceClients : added new services
remotingApplicationContext : refactor for cache package
Cherian Mathew [Tue, 27 Jan 2015 09:32:42 +0000 (09:32 +0000)]
refactoring due to change in cache package name
Cherian Mathew [Tue, 27 Jan 2015 09:29:44 +0000 (09:29 +0000)]
migrated cache related classes to another package
Patric Plitzner [Mon, 26 Jan 2015 14:23:45 +0000 (14:23 +0000)]
- added "Move Factual Data" option to navigator context menu
Patric Plitzner [Mon, 26 Jan 2015 14:21:46 +0000 (14:21 +0000)]
- code cleanup
Patric Plitzner [Fri, 23 Jan 2015 13:34:02 +0000 (13:34 +0000)]
- updated classpath
Patric Plitzner [Fri, 23 Jan 2015 13:32:01 +0000 (13:32 +0000)]
- added swagger annotations jar to taxeditor.cdmlib
Patric Plitzner [Fri, 23 Jan 2015 11:59:12 +0000 (11:59 +0000)]
- added *.* to file chooser
- fitted layout
Patric Plitzner [Fri, 23 Jan 2015 09:51:29 +0000 (09:51 +0000)]
- added file chooser for report file
Patric Plitzner [Thu, 22 Jan 2015 15:07:56 +0000 (15:07 +0000)]
- added transient service
Patric Plitzner [Thu, 22 Jan 2015 14:37:50 +0000 (14:37 +0000)]
- added TaxonName to Determinations in DetailsView
Cherian Mathew [Thu, 22 Jan 2015 09:36:01 +0000 (09:36 +0000)]
CdmServerInstanceInfo, RemotingLoginDialog, ShowRemotingLoginWindowHandler : functionality for remoting login
moved classes to appropriate locations.
merged from trunk.
Andreas Müller [Wed, 21 Jan 2015 16:49:53 +0000 (16:49 +0000)]
adapt services to new findByIdentifer in Editor
Cherian Mathew [Wed, 21 Jan 2015 11:13:31 +0000 (11:13 +0000)]
corrected product version string to allow for building binaries with timestamps
Patric Plitzner [Wed, 21 Jan 2015 10:34:39 +0000 (10:34 +0000)]
- added "Delete (with children)" icon
- cleaned up plugin.xml
Patric Plitzner [Wed, 21 Jan 2015 08:16:10 +0000 (08:16 +0000)]
- added sorting to generic configuration wizard page for imports
Cherian Mathew [Tue, 20 Jan 2015 11:20:50 +0000 (11:20 +0000)]
merge from trunk
Cherian Mathew [Tue, 20 Jan 2015 10:33:11 +0000 (10:33 +0000)]
ICdmEntitySessionManager, CdmEntitySessionManager, MockCdmEntitySessionManager : removed cdm entity session access methods
CdmServiceInterceptorException, CdmServiceRequestExecutor, TermServiceRequestExecutor : New executor classes to be used to execute intercept remote service requests starting with the term service
httpInvokerServiceClients : replaced term service executor with custom executor
hibernate.cfg.xml : new model 3.4 updates
CdmApplicationRemoteConfiguration : added method to access the session manager
Patric Plitzner [Fri, 16 Jan 2015 14:50:17 +0000 (14:50 +0000)]
- changed label of advanced media view (fixes #4590)
Patric Plitzner [Fri, 16 Jan 2015 10:49:30 +0000 (10:49 +0000)]
- set page to be complete
- changed text
Patric Plitzner [Fri, 16 Jan 2015 10:04:13 +0000 (10:04 +0000)]
- added classification chooser to ABCD import wizard
Patric Plitzner [Fri, 16 Jan 2015 10:02:18 +0000 (10:02 +0000)]
- extended DeleteHandler to also handle deletion of SpecimenDescriptions in FactualDataView
Patric Plitzner [Fri, 16 Jan 2015 10:01:15 +0000 (10:01 +0000)]
- close Derivate Editor if all elements are deleted
Patric Plitzner [Wed, 14 Jan 2015 13:06:47 +0000 (13:06 +0000)]
- show context menu only when at least one element is selected (fixes #4591)
Patric Plitzner [Wed, 14 Jan 2015 12:49:00 +0000 (12:49 +0000)]
- changed label of advanced media specimen view (fixes #4590)
Andreas Müller [Fri, 9 Jan 2015 12:24:14 +0000 (12:24 +0000)]
adapted menu and view labels for validation framework, removed menu for problems view
Andreas Müller [Fri, 9 Jan 2015 00:04:06 +0000 (00:04 +0000)]
merge validation editor branch to trunk
Andreas Müller [Thu, 8 Jan 2015 23:48:58 +0000 (23:48 +0000)]
merge validation editor branch to trunk
Andreas Müller [Thu, 8 Jan 2015 23:47:10 +0000 (23:47 +0000)]
merge validation editor branch to trunk
Andreas Müller [Thu, 8 Jan 2015 23:40:21 +0000 (23:40 +0000)]
merge validation editor branch to trunk
Andreas Müller [Thu, 8 Jan 2015 23:37:55 +0000 (23:37 +0000)]
merge validation editor branch to trunk
Andreas Müller [Thu, 8 Jan 2015 21:02:40 +0000 (21:02 +0000)]
fix transient repository issue
Andreas Müller [Thu, 8 Jan 2015 10:42:05 +0000 (10:42 +0000)]
update Transient services
Katja Luther [Tue, 6 Jan 2015 12:37:58 +0000 (12:37 +0000)]
#4574
Patric Plitzner [Tue, 16 Dec 2014 09:34:24 +0000 (09:34 +0000)]
- added option for deep delete (with children) to DerivateEditor
Patric Plitzner [Tue, 16 Dec 2014 09:33:43 +0000 (09:33 +0000)]
- added context menu option to create a new FieldUnit in DerivateEditor
edit-jenkins [Mon, 15 Dec 2014 17:15:39 +0000 (17:15 +0000)]
Updated version in config files to 3.4.1-SNAPSHOT
edit-jenkins [Mon, 15 Dec 2014 16:37:42 +0000 (16:37 +0000)]
Updated version in config files to 3.4.0
Patric Plitzner [Mon, 15 Dec 2014 16:07:31 +0000 (16:07 +0000)]
- changed order of file extension for excel import (fixes #3971)
Patric Plitzner [Mon, 15 Dec 2014 15:56:55 +0000 (15:56 +0000)]
- commented error logging for ImageInfo loading (#4385)
Patric Plitzner [Mon, 15 Dec 2014 13:44:31 +0000 (13:44 +0000)]
- set sample designation to null when text is empty
Patric Plitzner [Mon, 15 Dec 2014 13:41:23 +0000 (13:41 +0000)]
- allow creation of derivates only when editor is not dirty
Alexander Oppermann [Mon, 15 Dec 2014 13:17:55 +0000 (13:17 +0000)]
added a new propertytester to check if the editor is connected to database
hide popupmenu in taxon navigator view if not connected to database
Patric Plitzner [Mon, 15 Dec 2014 12:46:20 +0000 (12:46 +0000)]
- set background color of uneditable text field
Patric Plitzner [Mon, 15 Dec 2014 12:33:36 +0000 (12:33 +0000)]
- adpated to cdmlib changes
Alexander Oppermann [Mon, 15 Dec 2014 12:12:45 +0000 (12:12 +0000)]
disable checklist editor initially
Patric Plitzner [Mon, 15 Dec 2014 12:06:08 +0000 (12:06 +0000)]
- removed unused text field
Andreas Müller [Mon, 15 Dec 2014 10:25:05 +0000 (10:25 +0000)]
upgrade poi to 3.10-FINAL and add ooxml functionality
Alexander Oppermann [Fri, 12 Dec 2014 14:13:40 +0000 (14:13 +0000)]
chnaged description for LanguagePrefrence menu
Alexander Oppermann [Fri, 12 Dec 2014 14:09:00 +0000 (14:09 +0000)]
fixed ticket #4367
Alexander Oppermann [Fri, 12 Dec 2014 14:03:28 +0000 (14:03 +0000)]
Renamed classes to match the new order in PreferenceMenu
Alexander Oppermann [Fri, 12 Dec 2014 13:43:55 +0000 (13:43 +0000)]
Changed default language to language and changed former Language pane to Representation pane.
Patric Plitzner [Thu, 11 Dec 2014 20:35:04 +0000 (20:35 +0000)]
- use labelCache instead of description for amplification labeling
Patric Plitzner [Thu, 11 Dec 2014 20:33:21 +0000 (20:33 +0000)]
- fixed possible null label
Cherian Mathew [Thu, 11 Dec 2014 16:01:06 +0000 (16:01 +0000)]
merge from trunk
Patric Plitzner [Thu, 11 Dec 2014 15:19:11 +0000 (15:19 +0000)]
- update label cache
Patric Plitzner [Thu, 11 Dec 2014 14:57:36 +0000 (14:57 +0000)]
- adapted details views and wizards to cdm changes (amplifaction + amplification result)
- added missing parameters to details views
Katja Luther [Thu, 11 Dec 2014 12:55:53 +0000 (12:55 +0000)]
##3890
Patric Plitzner [Thu, 11 Dec 2014 12:06:19 +0000 (12:06 +0000)]
- temporarily commented compile errors