Cherian Mathew [Tue, 9 Dec 2014 17:05:00 +0000 (17:05 +0000)]
deleting remoting project and merge from trunk
Cherian Mathew [Tue, 9 Dec 2014 17:01:35 +0000 (17:01 +0000)]
added session binding committing to polytomous key editor
Cherian Mathew [Tue, 9 Dec 2014 16:56:03 +0000 (16:56 +0000)]
forgot the test files in the last commit
Cherian Mathew [Tue, 9 Dec 2014 16:55:17 +0000 (16:55 +0000)]
moving all source files from the remoting project to the cdmlib project
Cherian Mathew [Tue, 9 Dec 2014 16:33:31 +0000 (16:33 +0000)]
updated packages for remoting source
Cherian Mathew [Mon, 8 Dec 2014 17:28:55 +0000 (17:28 +0000)]
clean up
Cherian Mathew [Mon, 8 Dec 2014 15:43:46 +0000 (15:43 +0000)]
moving code to remoting project
Cherian Mathew [Mon, 8 Dec 2014 09:21:10 +0000 (09:21 +0000)]
cleaning up
Cherian Mathew [Mon, 8 Dec 2014 09:20:17 +0000 (09:20 +0000)]
cleaning up
Katja Luther [Mon, 8 Dec 2014 09:09:22 +0000 (09:09 +0000)]
Patric Plitzner [Thu, 4 Dec 2014 16:53:36 +0000 (16:53 +0000)]
- reverted to previous version due to compilation error
Patric Plitzner [Thu, 4 Dec 2014 15:00:20 +0000 (15:00 +0000)]
- added service method to get descriptions which have a specimen set as describedSpecimen
- added test which fails because the XML is loaded incorrectly
Patric Plitzner [Thu, 4 Dec 2014 14:30:13 +0000 (14:30 +0000)]
- added delete result as warn message
Katja Luther [Thu, 4 Dec 2014 13:15:08 +0000 (13:15 +0000)]
fix drag&drop for synonyms to another accepted taxon
Patric Plitzner [Thu, 4 Dec 2014 09:27:37 +0000 (09:27 +0000)]
- fixed ClassCastException
Patric Plitzner [Thu, 4 Dec 2014 09:02:48 +0000 (09:02 +0000)]
- adapted to method signature change in cdmlib
Cherian Mathew [Wed, 3 Dec 2014 16:06:09 +0000 (16:06 +0000)]
merge from trunk
Cherian Mathew [Wed, 3 Dec 2014 16:05:24 +0000 (16:05 +0000)]
updated tests and added checks to cacher
Patric Plitzner [Wed, 3 Dec 2014 15:39:31 +0000 (15:39 +0000)]
- deleted usage of commented method in cdmlib
Patric Plitzner [Wed, 3 Dec 2014 15:24:36 +0000 (15:24 +0000)]
- added command, handler, double click listener to open taxa from associated taxa section in details view
- caught runtime exception for orphaned taxa
Katja Luther [Wed, 3 Dec 2014 13:00:18 +0000 (13:00 +0000)]
adapt transientServices to returntype of isdeletable methods
Patric Plitzner [Wed, 3 Dec 2014 12:27:57 +0000 (12:27 +0000)]
- renamed interface IDerivedUnitFacadeEditor to IDerivedUnitFacadePart
- show field unit data in NewDerivedUnitBaseWizard
Patric Plitzner [Wed, 3 Dec 2014 08:47:56 +0000 (08:47 +0000)]
- added interface IDerivedUnitFacadeEditor to tag editors that are working with DerivedUnitFacades (e.g. BulkEditor)
- show field unit data for DerivedUnit when selected in BulkEditor
Patric Plitzner [Tue, 2 Dec 2014 09:32:17 +0000 (09:32 +0000)]
- removed unused imports
Patric Plitzner [Tue, 2 Dec 2014 09:24:50 +0000 (09:24 +0000)]
- added preference for displaying associated taxa in specimen details view
Patric Plitzner [Tue, 2 Dec 2014 09:01:38 +0000 (09:01 +0000)]
- added section for associated taxa (IndividualsAssocation, TypeDesignation) to DetailsView for specimen
Patric Plitzner [Tue, 2 Dec 2014 08:58:45 +0000 (08:58 +0000)]
- added amplification description to single read label in hierarchy
- added marker to update method of amplification description
Patric Plitzner [Tue, 2 Dec 2014 08:56:31 +0000 (08:56 +0000)]
- refactored/cleaned up commands extension point
Katja Luther [Mon, 1 Dec 2014 11:35:40 +0000 (11:35 +0000)]
fix the problem of referencingObjectsView and deletion in bulk editor
Patric Plitzner [Mon, 1 Dec 2014 10:30:58 +0000 (10:30 +0000)]
- added missing service method to transient service
Patric Plitzner [Mon, 1 Dec 2014 09:43:23 +0000 (09:43 +0000)]
- refactored LanguageStringWithLabelElement (isMultiLine flag)
Patric Plitzner [Mon, 1 Dec 2014 09:26:46 +0000 (09:26 +0000)]
- added notes (annotations) to SingleRead details view
Patric Plitzner [Mon, 1 Dec 2014 09:26:11 +0000 (09:26 +0000)]
- layout enhancement
Patric Plitzner [Mon, 1 Dec 2014 09:25:43 +0000 (09:25 +0000)]
- added barcode to MediaSpecimen label
Patric Plitzner [Wed, 26 Nov 2014 15:07:51 +0000 (15:07 +0000)]
- fixed possible NPE when opening DerivateView for a taxon when no derivates exist
Patric Plitzner [Wed, 26 Nov 2014 14:20:29 +0000 (14:20 +0000)]
- activated filter in factual data view for displaying only IndividualsAssociations
Patric Plitzner [Wed, 26 Nov 2014 13:52:45 +0000 (13:52 +0000)]
- removed obsolete Primer page for AmplificationWizard
- added dnaMarker to amplification designation
Patric Plitzner [Wed, 26 Nov 2014 12:50:33 +0000 (12:50 +0000)]
- re-enabled MediaViewPart for DerivateView (#4475)
Patric Plitzner [Wed, 26 Nov 2014 12:21:37 +0000 (12:21 +0000)]
- added missing service method to transient service
Patric Plitzner [Wed, 26 Nov 2014 12:19:10 +0000 (12:19 +0000)]
- moved extension point for taxon navigator context menu
- fixed DerivateSearchView layout
- added "disabled" extension point for toggling individual assciations in factual data view
Patric Plitzner [Wed, 26 Nov 2014 11:45:12 +0000 (11:45 +0000)]
- set multiline flag for LanguageStringWithLabelElement #2248
Patric Plitzner [Wed, 26 Nov 2014 08:54:43 +0000 (08:54 +0000)]
- added clear button to DerivateSearchView
- made use of cdmlib service to get associated specimen for one taxon (#4506)
Cherian Mathew [Tue, 25 Nov 2014 12:33:21 +0000 (12:33 +0000)]
added checks to makes sure no other exception is thrown within the dialog creation code #4502.
Patric Plitzner [Tue, 25 Nov 2014 09:02:07 +0000 (09:02 +0000)]
- added context menu entry to taxon navigator to open associated derivates in DerivateEditor
- added taxon filter to DerivateSearchView (non-functional) (#4506)
Patric Plitzner [Mon, 24 Nov 2014 10:47:33 +0000 (10:47 +0000)]
- added some more molecular parameters to the DetailsView
Patric Plitzner [Mon, 24 Nov 2014 10:16:04 +0000 (10:16 +0000)]
- removed unused code
Patric Plitzner [Mon, 24 Nov 2014 09:12:50 +0000 (09:12 +0000)]
- converted dnaQuality from DefinedTerm to OrderedTerm (#4434)
Patric Plitzner [Mon, 24 Nov 2014 08:37:19 +0000 (08:37 +0000)]
- adapted to cdmlib changes (#4434)
Patric Plitzner [Thu, 20 Nov 2014 13:53:04 +0000 (13:53 +0000)]
- added preference for showing Collecting Areas below Country in DetailsView (#4473)
Patric Plitzner [Thu, 20 Nov 2014 10:15:47 +0000 (10:15 +0000)]
- made use of TermType DnaQuality
Patric Plitzner [Thu, 20 Nov 2014 09:42:51 +0000 (09:42 +0000)]
- added static method to DerivateLabelProvider to get the derivate text
- refactored moving of derivates to use the operation framework.
- immplemented undo/redo
Patric Plitzner [Thu, 20 Nov 2014 09:41:33 +0000 (09:41 +0000)]
- DerivateView and BulkEditor trigger selection change event for MediaViewPart (fixes #4475)
Patric Plitzner [Thu, 20 Nov 2014 09:36:31 +0000 (09:36 +0000)]
- DerivedUnits DetailsView only shows FieldUnit data in titleCache (fixes #4474)
- Areas section is now shown below country for FieldUnits (fixes 4473)
Patric Plitzner [Thu, 20 Nov 2014 09:34:28 +0000 (09:34 +0000)]
- Rights section is now part of MediaSpecimen DetailsView (fixes #4472)
- DerivedUnits DetailsView only shows FieldUnit data in titleCache (fixes #4474)
Patric Plitzner [Tue, 18 Nov 2014 13:47:29 +0000 (13:47 +0000)]
- extended DerivateSearchView to allow multiple selection
- added context menu to open multiple elements in DerivateView
- extended DerivateView to show multiple derivate hierarchies in one view
Cherian Mathew [Tue, 18 Nov 2014 09:28:01 +0000 (09:28 +0000)]
remotingApplicationContext : now using the cachers from cdmlib
CdmServiceCacher : added unimplemented method
Katja Luther [Mon, 17 Nov 2014 12:39:46 +0000 (12:39 +0000)]
#4463 fixed
if a titlecache is updated and the position of the parsing problem is behind the actual text no position is created.
Patric Plitzner [Mon, 17 Nov 2014 09:54:35 +0000 (09:54 +0000)]
- exported eu.etaxonomy.cdm.io.csv.redlist.demo package to fix compile errors
Alexander Oppermann [Fri, 14 Nov 2014 16:29:20 +0000 (16:29 +0000)]
Added simple CSV Export to Taxonomic Editor
Cherian Mathew [Wed, 12 Nov 2014 16:30:12 +0000 (16:30 +0000)]
added recursive loading for collection and maps and also correspoding tests.
cleanup of code.
Patric Plitzner [Wed, 12 Nov 2014 14:35:23 +0000 (14:35 +0000)]
- updated molecular DetailsViews according to requirements
Patric Plitzner [Wed, 12 Nov 2014 08:51:52 +0000 (08:51 +0000)]
- used ImageFile instead of more generic MediaRepresentationPart when creating the Media (fixes #4402)
- fixed a typo
Cherian Mathew [Wed, 12 Nov 2014 08:27:20 +0000 (08:27 +0000)]
merge from trunk
Cherian Mathew [Tue, 11 Nov 2014 17:59:01 +0000 (17:59 +0000)]
merge from trunk
Cherian Mathew [Tue, 11 Nov 2014 17:58:25 +0000 (17:58 +0000)]
added tests for recursive cdm entity loading and updated corresponding code
Patric Plitzner [Tue, 11 Nov 2014 13:11:11 +0000 (13:11 +0000)]
- moved OriginalLabelData section to 2nd position
- made text field fill horizontally
Patric Plitzner [Tue, 11 Nov 2014 08:34:23 +0000 (08:34 +0000)]
- refactored DerivateViewEditorInput to use UUIDs instead of CDM entities
- added delete operation to DerivateView (currently only deleting leafs of the derivate tree is allowed)
Katja Luther [Mon, 10 Nov 2014 08:55:43 +0000 (08:55 +0000)]
fixing problems in bulkeditor and minor
Patric Plitzner [Tue, 4 Nov 2014 14:54:51 +0000 (14:54 +0000)]
- fixed possible NPE
Patric Plitzner [Tue, 4 Nov 2014 13:56:39 +0000 (13:56 +0000)]
- used more pepresentative DerivationEventTypes when creating derivates via DerivatView
Katja Luther [Thu, 30 Oct 2014 10:44:49 +0000 (10:44 +0000)]
Katja Luther [Thu, 30 Oct 2014 10:43:43 +0000 (10:43 +0000)]
fixing #2547
Cherian Mathew [Wed, 29 Oct 2014 18:01:29 +0000 (18:01 +0000)]
session object for remoting
Cherian Mathew [Wed, 29 Oct 2014 18:00:33 +0000 (18:00 +0000)]
added code + config for caching mechanism
Cherian Mathew [Wed, 29 Oct 2014 17:56:16 +0000 (17:56 +0000)]
added,
CdmModelGetMethodCacherTest : for testing the hibernate class mappings get methods caching process
CdmClientCachingTest : for testing the entire caching mechanism
MockSessionOwner : a mock session owner object
cdmlib-ehcache.xml : test ehcache configuration
updated,
existing tests and config
Cherian Mathew [Wed, 29 Oct 2014 17:51:40 +0000 (17:51 +0000)]
removed unnecessary imports
Cherian Mathew [Wed, 29 Oct 2014 15:17:15 +0000 (15:17 +0000)]
new empty db confirming to model 3.4.0
Patric Plitzner [Wed, 29 Oct 2014 14:50:10 +0000 (14:50 +0000)]
- fixed class cast exception
Katja Luther [Wed, 29 Oct 2014 12:18:01 +0000 (12:18 +0000)]
Patric Plitzner [Wed, 29 Oct 2014 10:39:34 +0000 (10:39 +0000)]
- added exception throwing to URI assembly in Sequence class
- handled exception in editor details view
Patric Plitzner [Wed, 29 Oct 2014 10:38:50 +0000 (10:38 +0000)]
- added elevation to section title
Patric Plitzner [Wed, 29 Oct 2014 10:38:11 +0000 (10:38 +0000)]
- applied coding conventions
Patric Plitzner [Wed, 29 Oct 2014 08:37:56 +0000 (08:37 +0000)]
- fixed possible SessionException
Patric Plitzner [Tue, 28 Oct 2014 18:25:17 +0000 (18:25 +0000)]
- adapted derivate hierarchy assembly to cdmlib3.4 changes (TissueSample, DnaSample as one class)
Cherian Mathew [Tue, 28 Oct 2014 16:52:24 +0000 (16:52 +0000)]
eu.etaxonomy.taxeditor/pom.xml : reverted addition of nebula widget jars
pom.xml : changed nebula repository to archived one
eu.etaxonomy.taxeditor/rcp.target : changed composite table jar widget to the one in the repository
Cherian Mathew [Tue, 28 Oct 2014 14:45:30 +0000 (14:45 +0000)]
removed version dependency for org.eclipse.nebula.widgets.compositetable
and added the composite table jar to the p2 update
Katja Luther [Tue, 28 Oct 2014 13:10:03 +0000 (13:10 +0000)]
fix #4450
Cherian Mathew [Tue, 28 Oct 2014 08:53:06 +0000 (08:53 +0000)]
added space between beta prefix and version
Patric Plitzner [Mon, 27 Oct 2014 12:48:42 +0000 (12:48 +0000)]
- fixed double exception dialog popup when not connected to data source
- fixed NPE when starting ABCD import with dirty editors
Patric Plitzner [Mon, 27 Oct 2014 10:50:11 +0000 (10:50 +0000)]
- fixed possible NPE when entering DnaQuality data
Patric Plitzner [Mon, 27 Oct 2014 09:22:29 +0000 (09:22 +0000)]
- implemented missing interface method
Cherian Mathew [Fri, 24 Oct 2014 08:22:25 +0000 (08:22 +0000)]
changed beta prefix back to beta
Patric Plitzner [Wed, 22 Oct 2014 13:42:08 +0000 (13:42 +0000)]
- added kind of tissue to TissueSampleDetailsView
Patric Plitzner [Wed, 22 Oct 2014 13:36:31 +0000 (13:36 +0000)]
- added TODO
Patric Plitzner [Wed, 22 Oct 2014 12:59:25 +0000 (12:59 +0000)]
reintegrated taxeditor-3.4 branch into trunk
Patric Plitzner [Wed, 22 Oct 2014 12:42:13 +0000 (12:42 +0000)]
merge-update from trunk
Patric Plitzner [Wed, 22 Oct 2014 11:57:52 +0000 (11:57 +0000)]
- generalized sample designation GUI elements
- added sample designation to TissueSample details view
- added some more parameters to TissueSample details view
Patric Plitzner [Tue, 21 Oct 2014 12:45:04 +0000 (12:45 +0000)]
merge-update from trunk
Patric Plitzner [Tue, 21 Oct 2014 12:44:52 +0000 (12:44 +0000)]
- added empty "Delete Derivate" functionality to DerivateView
Patric Plitzner [Tue, 21 Oct 2014 11:44:23 +0000 (11:44 +0000)]
- removed unused package