Cherian Mathew [Fri, 4 Apr 2014 09:28:07 +0000 (09:28 +0000)]
Adding CDM Remote Source set of classes to allow editor to connect to a remote cdmserver
Cherian Mathew [Fri, 4 Apr 2014 09:27:04 +0000 (09:27 +0000)]
CdmApplicationRemoteConfiguration : removed spring bean name hack, since we now have a new controller
CdmApplicationRemoteController : new Controller class to handle remoting
AbstractLazyInitializer / AbstractPersistentCollection : added missing methods to check if proxy object is initialized
CdmRemoteSourceTest : Added new test class to test the CDM Remote Source
httpInvokerServiceClients.xml : added primer service
Patric Plitzner [Wed, 2 Apr 2014 14:08:30 +0000 (14:08 +0000)]
- refactored context menu for DerivateView to be programmatic instead of declarative (using plugin.xml)
- fixed icon bug for DerivateSearchView
Patric Plitzner [Wed, 2 Apr 2014 11:01:53 +0000 (11:01 +0000)]
- only show Copy/Paste context menu for SingleRead/Sequence
Patric Plitzner [Wed, 2 Apr 2014 09:37:31 +0000 (09:37 +0000)]
- added update() method to DerivateView
- display different icon for SingleReads linked to multiple Sequences
Patric Plitzner [Wed, 2 Apr 2014 07:55:16 +0000 (07:55 +0000)]
- added util method to get the TreeNode out of a selection
Patric Plitzner [Tue, 1 Apr 2014 15:14:26 +0000 (15:14 +0000)]
- added Copy/Paste for SingleRead->Sequence to DerivateView
- copying actually just creates a link
Patric Plitzner [Tue, 1 Apr 2014 08:03:12 +0000 (08:03 +0000)]
- fixed user message
Patric Plitzner [Tue, 1 Apr 2014 07:44:46 +0000 (07:44 +0000)]
- added gel photo detail element to Amplification wizard
Patric Plitzner [Tue, 1 Apr 2014 06:51:22 +0000 (06:51 +0000)]
- removed Amplification as a TreeNode from the DerivateView
- added Amplification to DetailsView of SingleRead as an EntitySelectionElement
Patric Plitzner [Tue, 1 Apr 2014 06:49:18 +0000 (06:49 +0000)]
- fixed javadoc
Patric Plitzner [Mon, 31 Mar 2014 12:19:33 +0000 (12:19 +0000)]
- organize imports for new molecular services
Patric Plitzner [Mon, 31 Mar 2014 12:19:17 +0000 (12:19 +0000)]
- fix cdmlib version number in .classpath (why does maven not generate this anymore?)
- added "molecular" package to exported packages
- organize imports for new molecular services
Patric Plitzner [Mon, 31 Mar 2014 08:10:36 +0000 (08:10 +0000)]
- used "move derivate" methods of service layer
- added java doc
edit-jenkins [Fri, 28 Mar 2014 17:01:09 +0000 (17:01 +0000)]
Updated version in config files to 3.3.2-SNAPSHOT
edit-jenkins [Fri, 28 Mar 2014 16:28:13 +0000 (16:28 +0000)]
Updated version in config files to 3.3.1
Patric Plitzner [Wed, 26 Mar 2014 14:37:30 +0000 (14:37 +0000)]
- moved move-logic to occurrence service layer
Patric Plitzner [Wed, 26 Mar 2014 12:35:41 +0000 (12:35 +0000)]
- reset input fields of DerivateSearchView when context stops
Patric Plitzner [Wed, 26 Mar 2014 07:39:46 +0000 (07:39 +0000)]
- added drag'n'drop support for Sequences
- added context listener to DerivateSearchView
- refactored MVC pattern of DerivateSearchView
Patric Plitzner [Tue, 25 Mar 2014 16:08:44 +0000 (16:08 +0000)]
- added support for SingleRead drag'n'drop
Patric Plitzner [Tue, 25 Mar 2014 13:30:25 +0000 (13:30 +0000)]
- implemented drag'n'drop support for SpecimenOrObservationBase in Derivate View
Patric Plitzner [Tue, 25 Mar 2014 08:35:04 +0000 (08:35 +0000)]
- minor
Patric Plitzner [Mon, 24 Mar 2014 15:10:51 +0000 (15:10 +0000)]
- minor enhancement
Patric Plitzner [Mon, 24 Mar 2014 13:24:08 +0000 (13:24 +0000)]
- added timeout to internet availability check
Patric Plitzner [Mon, 24 Mar 2014 13:23:36 +0000 (13:23 +0000)]
- fixed ClassCastException for FeatureNodeContainers
Patric Plitzner [Mon, 24 Mar 2014 10:39:36 +0000 (10:39 +0000)]
- added basic drag'n'drop support to DerivateView
Cherian Mathew [Thu, 20 Mar 2014 15:20:24 +0000 (15:20 +0000)]
added more tests for both lazy loading entities and collections
Andreas Kohlbecker [Thu, 20 Mar 2014 15:06:18 +0000 (15:06 +0000)]
adding missing methods
Katja Luther [Thu, 20 Mar 2014 12:51:00 +0000 (12:51 +0000)]
#4114 sort order in taxon navigator
Patric Plitzner [Wed, 19 Mar 2014 14:53:56 +0000 (14:53 +0000)]
- fixed class cast exception resulting from TreeNodes of DerivateView
Patric Plitzner [Wed, 19 Mar 2014 14:45:36 +0000 (14:45 +0000)]
- added context menu for TissueSample in DerivateView
Katja Luther [Tue, 18 Mar 2014 13:15:06 +0000 (13:15 +0000)]
while fixing a bug, revert the setting of the comparator.
Andreas Kohlbecker [Mon, 17 Mar 2014 22:03:05 +0000 (22:03 +0000)]
taxeditor part of fix for #4121 (Changing password does not work)
Andreas Kohlbecker [Mon, 17 Mar 2014 22:03:02 +0000 (22:03 +0000)]
avoiding problems which where due to a fix for ticket #3822
Katja Luther [Mon, 17 Mar 2014 12:50:59 +0000 (12:50 +0000)]
with the fixed compareTo method the TaxonNodeComparator should work (#4114)
Patric Plitzner [Mon, 17 Mar 2014 09:02:41 +0000 (09:02 +0000)]
- added isEnabled() method to IEnableableFormElement
Patric Plitzner [Mon, 17 Mar 2014 08:58:10 +0000 (08:58 +0000)]
- added missing interface method
Patric Plitzner [Mon, 17 Mar 2014 08:43:08 +0000 (08:43 +0000)]
- removed StoreUtil.getCdmEntity() invocation (#4091)
Patric Plitzner [Mon, 17 Mar 2014 07:54:29 +0000 (07:54 +0000)]
- fixed context menu options
Patric Plitzner [Mon, 17 Mar 2014 07:51:57 +0000 (07:51 +0000)]
- implemented EntitySelectionElement for Primer
- adapted details views with primer selection element
Patric Plitzner [Mon, 17 Mar 2014 07:50:39 +0000 (07:50 +0000)]
- added missing interface method
Andreas Kohlbecker [Fri, 14 Mar 2014 13:52:45 +0000 (13:52 +0000)]
implementing #4120: User always needs to have the right to change password and hiding all user related menu contributions if no user is logged in
Andreas Kohlbecker [Fri, 14 Mar 2014 13:52:41 +0000 (13:52 +0000)]
Revert "#4114 sort order in taxon navigator " to avoid blocking bug
This reverts commit
1ef7ab55c5d437aba039bc10ee8d81e12f402309.
Cherian Mathew [Thu, 13 Mar 2014 21:24:09 +0000 (21:24 +0000)]
adding missing manifest file
Cherian Mathew [Thu, 13 Mar 2014 20:23:45 +0000 (20:23 +0000)]
setting application configuration and boolean remoting flag (bean) in hibernate proxy classes to differentiate local and remoting
Andreas Kohlbecker [Thu, 13 Mar 2014 15:51:44 +0000 (15:51 +0000)]
after review final modification for #4115 ('editor' users cannot create new references via the reference select list)
Andreas Kohlbecker [Thu, 13 Mar 2014 15:09:15 +0000 (15:09 +0000)]
implementing #4123 (add idInVocabulary to term labels in editor)
Andreas Kohlbecker [Thu, 13 Mar 2014 15:09:11 +0000 (15:09 +0000)]
removing unavailable extension eu.etaxonomy.cdm.remote.controller.csv
Cherian Mathew [Thu, 13 Mar 2014 15:00:56 +0000 (15:00 +0000)]
added remote collection method checks in addition to local for lists and sets
Katja Luther [Thu, 13 Mar 2014 13:24:08 +0000 (13:24 +0000)]
#4114 sort order in taxon navigator
Andreas Kohlbecker [Thu, 13 Mar 2014 12:39:49 +0000 (12:39 +0000)]
catching PermissionDeniedExceptions when only doing a check, so these exceptions no longer pollute the log
Andreas Kohlbecker [Thu, 13 Mar 2014 12:39:45 +0000 (12:39 +0000)]
avoiding NPE
Cherian Mathew [Thu, 13 Mar 2014 09:00:53 +0000 (09:00 +0000)]
added test class for persistent collections and also a base class for configuringsetting up remote configuration.
Cherian Mathew [Wed, 12 Mar 2014 14:24:37 +0000 (14:24 +0000)]
added call to remoting with correct check
Andreas Kohlbecker [Tue, 11 Mar 2014 17:47:18 +0000 (17:47 +0000)]
fixing #4115 ('editor' users cannot create new references via the reference select list)
Andreas Kohlbecker [Tue, 11 Mar 2014 17:10:09 +0000 (17:10 +0000)]
fixing #4116 (ClassCastException when selecting Euro+Med top level area in DistributionElement details view)
Andreas Kohlbecker [Tue, 11 Mar 2014 16:38:15 +0000 (16:38 +0000)]
fixing problem of publish checkbox disabled state being overwritten
Patric Plitzner [Tue, 11 Mar 2014 07:38:55 +0000 (07:38 +0000)]
- refactored selection of DerivateView to be TreeNode
- adapted selection handling
- restructured derivate hierarchy
- Amplifications are now a direct child of Sequences
- the can only be created when having a SingleRead
- this representation does not affect the cdm structure
Patric Plitzner [Tue, 11 Mar 2014 07:34:50 +0000 (07:34 +0000)]
- fixed refresh problem
Patric Plitzner [Mon, 10 Mar 2014 15:01:56 +0000 (15:01 +0000)]
- clean code
Andreas Kohlbecker [Mon, 10 Mar 2014 11:43:47 +0000 (11:43 +0000)]
fixing: #4110 (imlement nicer warning dialogue in Taxon Editor for permission denied exception)
Andreas Kohlbecker [Thu, 6 Mar 2014 17:09:03 +0000 (17:09 +0000)]
more details in exception message of StoreUtil.getCdmEntity()
Andreas Kohlbecker [Thu, 6 Mar 2014 16:59:40 +0000 (16:59 +0000)]
dnd support in taxon navigator for Taxonnodes protected regarding user permissions - #4055 (action enablement adapts to the users granted authorities)
Andreas Kohlbecker [Wed, 5 Mar 2014 17:18:31 +0000 (17:18 +0000)]
avoiding NPE and other exceptions
Andreas Kohlbecker [Wed, 5 Mar 2014 17:18:26 +0000 (17:18 +0000)]
updating project url in pom.xml
Andreas Kohlbecker [Wed, 5 Mar 2014 17:18:25 +0000 (17:18 +0000)]
no longer using a conversation for the login dialog and thus fixing problems after putting wrong credentials
Andreas Kohlbecker [Wed, 5 Mar 2014 17:15:22 +0000 (17:15 +0000)]
fixing setEnabled method
Patric Plitzner [Wed, 5 Mar 2014 14:33:12 +0000 (14:33 +0000)]
- removed dummy data from SpecimenImport
Patric Plitzner [Wed, 5 Mar 2014 14:28:32 +0000 (14:28 +0000)]
- fixed event handling by creating and linking the missing elements
Patric Plitzner [Wed, 5 Mar 2014 12:24:41 +0000 (12:24 +0000)]
- added missing DNA Quality section
Patric Plitzner [Wed, 5 Mar 2014 12:18:55 +0000 (12:18 +0000)]
- adpated DNA DetailsViews according to current development
Patric Plitzner [Wed, 5 Mar 2014 12:16:51 +0000 (12:16 +0000)]
- renamed getBaseUnit() to baseUnit()
Patric Plitzner [Wed, 5 Mar 2014 12:16:11 +0000 (12:16 +0000)]
- added transparency to icons
Patric Plitzner [Wed, 5 Mar 2014 07:43:08 +0000 (07:43 +0000)]
- added util method to get for getting a CDM entity (used in authenication/permission framework)
- made use of this method where the type of the parameter was too general (like object)
- made getBaseUnit() of DerivedUnitFacade public
Patric Plitzner [Tue, 4 Mar 2014 16:18:28 +0000 (16:18 +0000)]
- added icons for Amplification, Sequence and SingleRead
Patric Plitzner [Tue, 4 Mar 2014 08:25:39 +0000 (08:25 +0000)]
- added code to show icon for Amplification, Sequence and SingleRead (image files still missing)
- removed text fields for media file in dna DetailsViews
- added contig file in Sequence DetailsView
Patric Plitzner [Mon, 3 Mar 2014 08:48:20 +0000 (08:48 +0000)]
- added cascading save to pherogram (Media) of SingleRead
- added media section to DetailsViews for Amplification (gel photo) and SingelRead (pherogram)
Andreas Kohlbecker [Fri, 28 Feb 2014 11:17:31 +0000 (11:17 +0000)]
fixing missing text of Group members (User) in details section
Katja Luther [Thu, 27 Feb 2014 08:42:33 +0000 (08:42 +0000)]
fix problem with changeSynonymToAcceptedTaxon of a synonym being part of an homotypical group
Andreas Kohlbecker [Wed, 26 Feb 2014 16:25:40 +0000 (16:25 +0000)]
protecting editing capabilities of names references and authors - #4055 (action enablement adapts to the users granted authorities)
Patric Plitzner [Wed, 26 Feb 2014 14:42:42 +0000 (14:42 +0000)]
- added multi-select(multi-save) to SpecimenImportEditor
Andreas Kohlbecker [Wed, 26 Feb 2014 14:36:46 +0000 (14:36 +0000)]
fix: adding missing case statements
Andreas Kohlbecker [Wed, 26 Feb 2014 11:02:39 +0000 (11:02 +0000)]
disabling edit button if user is allowed to UPDATE & making text elements selectable
Andreas Kohlbecker [Wed, 26 Feb 2014 11:02:33 +0000 (11:02 +0000)]
implementing the CommandHandlerButton and using it as button to open the OpenFeatureTreeEditorWizard - #4055 (action enablement adapts to the users granted authorities)
Patric Plitzner [Wed, 26 Feb 2014 08:39:05 +0000 (08:39 +0000)]
- moved transient interfaces to taxeditor.editor
- changed GUI control of DataImportEditor to be a TableViewer
- made DataImportEditor generic
Andreas Müller [Tue, 25 Feb 2014 21:36:43 +0000 (21:36 +0000)]
minor
Cherian Mathew [Tue, 25 Feb 2014 08:03:44 +0000 (08:03 +0000)]
disabling remoting calls untill further investigation
Andreas Müller [Mon, 24 Feb 2014 14:48:22 +0000 (14:48 +0000)]
minor
Patric Plitzner [Mon, 24 Feb 2014 07:51:18 +0000 (07:51 +0000)]
- added missing imports
Patric Plitzner [Mon, 24 Feb 2014 07:47:38 +0000 (07:47 +0000)]
- start conversation before ABCD conversion
- pass conversation to editor
Andreas Kohlbecker [Fri, 21 Feb 2014 18:16:25 +0000 (18:16 +0000)]
adding warning dialog on unavailabel DefinedTermEditor
Andreas Kohlbecker [Fri, 21 Feb 2014 18:15:48 +0000 (18:15 +0000)]
removing unused parameter definition
Andreas Kohlbecker [Fri, 21 Feb 2014 18:15:44 +0000 (18:15 +0000)]
fixing broken parameter for eu.etaxonomy.taxeditor.store.openDefinedTermEditor command
Cherian Mathew [Thu, 20 Feb 2014 16:37:36 +0000 (16:37 +0000)]
RemoteLazyLoadingTest : Creating application configuration programmatically
AbstractPersistentCollection, AbstractLazyInitializer : Copied aspect code here
CdmApplicationRemoteConfiguration : overriding datasource since it is not required in remoting
remotingApplicationContext : added autowiring config
Katja Luther [Thu, 20 Feb 2014 09:11:21 +0000 (09:11 +0000)]
additional delete functionality to bulkeditor
Andreas Kohlbecker [Wed, 19 Feb 2014 15:23:33 +0000 (15:23 +0000)]
minor fixing
Patric Plitzner [Wed, 19 Feb 2014 14:56:58 +0000 (14:56 +0000)]
- implemented "Save Specimen" command
- added @Override annotations
Andreas Kohlbecker [Wed, 19 Feb 2014 14:52:32 +0000 (14:52 +0000)]
RolesSourceProvider to enable activities by cdm roles and protecting bulkeditors and term editors - #4055 (action enablement adapts to the users granted authorities)
Andreas Kohlbecker [Wed, 19 Feb 2014 14:52:23 +0000 (14:52 +0000)]
base implementation and configuration for securing the editor - #4055 (action enablement adapts to the users granted authorities)
Andreas Kohlbecker [Wed, 19 Feb 2014 14:52:09 +0000 (14:52 +0000)]
.gitignore