taxeditor.git
8 years agolast fix for revision number of classpath
Alexander Oppermann [Tue, 9 Dec 2014 17:18:52 +0000 (17:18 +0000)]
last fix for revision number of classpath

8 years agotoo many fixes on classpath for today
Alexander Oppermann [Tue, 9 Dec 2014 17:04:21 +0000 (17:04 +0000)]
too many fixes on classpath for today

8 years agofixed classpath
Alexander Oppermann [Tue, 9 Dec 2014 16:58:24 +0000 (16:58 +0000)]
fixed classpath

8 years agoAdded changes from redlist taxonomic editor branch
Alexander Oppermann [Tue, 9 Dec 2014 16:33:32 +0000 (16:33 +0000)]
Added changes from redlist taxonomic editor branch

* fixes Language bug for menue
* added Perspective for checklist
* fixes reload issues on checklist editor

8 years agochanges to be compliant with trunk for reintegration
Alexander Oppermann [Tue, 9 Dec 2014 16:28:12 +0000 (16:28 +0000)]
changes to be compliant with trunk for reintegration

8 years agomerged trunk into branch
Alexander Oppermann [Tue, 9 Dec 2014 16:21:42 +0000 (16:21 +0000)]
merged trunk into branch

8 years ago - added special case handling for DerivateEditor so that the DetailsView only show...
Patric Plitzner [Tue, 9 Dec 2014 15:52:02 +0000 (15:52 +0000)]
 - added special case handling for DerivateEditor so that the DetailsView only show data of the DerivedUnit and the FieldUnit #4474

8 years ago - fixed possible ClassCastException (#4533)
Patric Plitzner [Tue, 9 Dec 2014 15:46:17 +0000 (15:46 +0000)]
 - fixed possible ClassCastException (#4533)

8 years ago - added reference to ticket in comments
Patric Plitzner [Tue, 9 Dec 2014 15:34:21 +0000 (15:34 +0000)]
 - added reference to ticket in comments
 - keep on displaying view contents when selecting the view itself

8 years agoMessagingUtils : added new method for a warning dialog when not connected to a datas...
Cherian Mathew [Tue, 9 Dec 2014 15:33:02 +0000 (15:33 +0000)]
MessagingUtils : added new method for a warning dialog when not connected to a  datasource
CdmStore : changed warning dialog to new method mentioned above
LanguagePreferencePage, PreferencesUtil, AbstractMenuPreferences : checks to fail nicely if not connected to a datasoruce

8 years agoremoved throwing of runtime exception since we already have a warning (#4365)
Cherian Mathew [Tue, 9 Dec 2014 14:29:27 +0000 (14:29 +0000)]
removed throwing of runtime exception since we already have a warning (#4365)

8 years agofixed ticket #3763
Alexander Oppermann [Tue, 9 Dec 2014 13:37:43 +0000 (13:37 +0000)]
fixed ticket #3763

8 years agofixed ticket #1639
Alexander Oppermann [Tue, 9 Dec 2014 12:04:14 +0000 (12:04 +0000)]
fixed ticket #1639

8 years ago(no commit message)
Katja Luther [Mon, 8 Dec 2014 12:49:14 +0000 (12:49 +0000)]

8 years ago(no commit message)
Katja Luther [Mon, 8 Dec 2014 12:29:54 +0000 (12:29 +0000)]

8 years agoFixed Bug #4531
Alexander Oppermann [Mon, 8 Dec 2014 12:24:54 +0000 (12:24 +0000)]
Fixed Bug  #4531

8 years ago(no commit message)
Katja Luther [Mon, 8 Dec 2014 12:11:56 +0000 (12:11 +0000)]

8 years ago(no commit message)
Katja Luther [Mon, 8 Dec 2014 09:09:22 +0000 (09:09 +0000)]

8 years agoAdded a reload function so that the checklist editor doesn't need to be relaunched...
Alexander Oppermann [Fri, 5 Dec 2014 16:13:48 +0000 (16:13 +0000)]
Added a reload function so that the checklist editor doesn't need to be relaunched after adding terms.

8 years ago - reverted to previous version due to compilation error
Patric Plitzner [Thu, 4 Dec 2014 16:53:36 +0000 (16:53 +0000)]
 - reverted to previous version due to compilation error

8 years ago - added service method to get descriptions which have a specimen set as describedSpe...
Patric Plitzner [Thu, 4 Dec 2014 15:00:20 +0000 (15:00 +0000)]
 - added service method to get descriptions which have a specimen set as describedSpecimen
 - added test which fails because the XML is loaded incorrectly

8 years ago - added delete result as warn message
Patric Plitzner [Thu, 4 Dec 2014 14:30:13 +0000 (14:30 +0000)]
 - added delete result as warn message

8 years agofix drag&drop for synonyms to another accepted taxon
Katja Luther [Thu, 4 Dec 2014 13:15:08 +0000 (13:15 +0000)]
fix drag&drop for synonyms to another accepted taxon

8 years ago - fixed ClassCastException
Patric Plitzner [Thu, 4 Dec 2014 09:27:37 +0000 (09:27 +0000)]
 - fixed ClassCastException

8 years ago - adapted to method signature change in cdmlib
Patric Plitzner [Thu, 4 Dec 2014 09:02:48 +0000 (09:02 +0000)]
 - adapted to method signature change in cdmlib

8 years ago - deleted usage of commented method in cdmlib
Patric Plitzner [Wed, 3 Dec 2014 15:39:31 +0000 (15:39 +0000)]
 - deleted usage of commented method in cdmlib

8 years ago - added command, handler, double click listener to open taxa from associated taxa...
Patric Plitzner [Wed, 3 Dec 2014 15:24:36 +0000 (15:24 +0000)]
 - added command, handler, double click listener to open taxa from associated taxa section in details view
 - caught runtime exception for orphaned taxa

8 years agoadapt transientServices to returntype of isdeletable methods
Katja Luther [Wed, 3 Dec 2014 13:00:18 +0000 (13:00 +0000)]
adapt transientServices to returntype of isdeletable methods

8 years ago - renamed interface IDerivedUnitFacadeEditor to IDerivedUnitFacadePart
Patric Plitzner [Wed, 3 Dec 2014 12:27:57 +0000 (12:27 +0000)]
 - renamed interface IDerivedUnitFacadeEditor to IDerivedUnitFacadePart
 - show field unit data in NewDerivedUnitBaseWizard

8 years ago - added interface IDerivedUnitFacadeEditor to tag editors that are working with...
Patric Plitzner [Wed, 3 Dec 2014 08:47:56 +0000 (08:47 +0000)]
 - added interface IDerivedUnitFacadeEditor to tag editors that are working with DerivedUnitFacades (e.g. BulkEditor)
 - show field unit data for DerivedUnit when selected in BulkEditor

8 years ago - removed unused imports
Patric Plitzner [Tue, 2 Dec 2014 09:32:17 +0000 (09:32 +0000)]
 - removed unused imports

8 years ago - added preference for displaying associated taxa in specimen details view
Patric Plitzner [Tue, 2 Dec 2014 09:24:50 +0000 (09:24 +0000)]
 - added preference for displaying associated taxa in specimen details view

8 years ago - added section for associated taxa (IndividualsAssocation, TypeDesignation) to...
Patric Plitzner [Tue, 2 Dec 2014 09:01:38 +0000 (09:01 +0000)]
 - added section for associated taxa (IndividualsAssocation, TypeDesignation) to DetailsView for specimen

8 years ago - added amplification description to single read label in hierarchy
Patric Plitzner [Tue, 2 Dec 2014 08:58:45 +0000 (08:58 +0000)]
 - added amplification description to single read label in hierarchy
 - added marker to update method of amplification description

8 years ago - refactored/cleaned up commands extension point
Patric Plitzner [Tue, 2 Dec 2014 08:56:31 +0000 (08:56 +0000)]
 - refactored/cleaned up commands extension point

8 years agofix the problem of referencingObjectsView and deletion in bulk editor
Katja Luther [Mon, 1 Dec 2014 11:35:40 +0000 (11:35 +0000)]
fix the problem of referencingObjectsView and deletion in bulk editor

8 years ago - added missing service method to transient service
Patric Plitzner [Mon, 1 Dec 2014 10:30:58 +0000 (10:30 +0000)]
 - added missing service method to transient service

8 years ago - refactored LanguageStringWithLabelElement (isMultiLine flag)
Patric Plitzner [Mon, 1 Dec 2014 09:43:23 +0000 (09:43 +0000)]
 - refactored LanguageStringWithLabelElement (isMultiLine flag)

8 years ago - added notes (annotations) to SingleRead details view
Patric Plitzner [Mon, 1 Dec 2014 09:26:46 +0000 (09:26 +0000)]
 - added notes (annotations) to SingleRead details view

8 years ago - layout enhancement
Patric Plitzner [Mon, 1 Dec 2014 09:26:11 +0000 (09:26 +0000)]
 - layout enhancement

8 years ago - added barcode to MediaSpecimen label
Patric Plitzner [Mon, 1 Dec 2014 09:25:43 +0000 (09:25 +0000)]
 - added barcode to MediaSpecimen label

8 years ago - fixed possible NPE when opening DerivateView for a taxon when no derivates exist
Patric Plitzner [Wed, 26 Nov 2014 15:07:51 +0000 (15:07 +0000)]
 - fixed possible NPE when opening DerivateView for a taxon when no derivates exist

8 years agoChecklist Editor retreives now all PresenceAbsenceTerms by filtering via TermType...
Alexander Oppermann [Wed, 26 Nov 2014 14:24:07 +0000 (14:24 +0000)]
Checklist Editor retreives now all PresenceAbsenceTerms by filtering via TermType.PresenceAbsence instead of PresenceAbsenceTerm.class

8 years ago - activated filter in factual data view for displaying only IndividualsAssociations
Patric Plitzner [Wed, 26 Nov 2014 14:20:29 +0000 (14:20 +0000)]
 - activated filter in factual data view for displaying only IndividualsAssociations

8 years ago - removed obsolete Primer page for AmplificationWizard
Patric Plitzner [Wed, 26 Nov 2014 13:52:45 +0000 (13:52 +0000)]
 - removed obsolete Primer page for AmplificationWizard
 - added dnaMarker to amplification designation

8 years ago - re-enabled MediaViewPart for DerivateView (#4475)
Patric Plitzner [Wed, 26 Nov 2014 12:50:33 +0000 (12:50 +0000)]
 - re-enabled MediaViewPart for DerivateView (#4475)

8 years ago - added missing service method to transient service
Patric Plitzner [Wed, 26 Nov 2014 12:21:37 +0000 (12:21 +0000)]
 - added missing service method to transient service

8 years ago - moved extension point for taxon navigator context menu
Patric Plitzner [Wed, 26 Nov 2014 12:19:10 +0000 (12:19 +0000)]
 - moved extension point for taxon navigator context menu
 - fixed DerivateSearchView layout
 - added "disabled" extension point for toggling individual assciations in factual data view

8 years ago - set multiline flag for LanguageStringWithLabelElement #2248
Patric Plitzner [Wed, 26 Nov 2014 11:45:12 +0000 (11:45 +0000)]
 - set multiline flag for LanguageStringWithLabelElement #2248

8 years ago - added clear button to DerivateSearchView
Patric Plitzner [Wed, 26 Nov 2014 08:54:43 +0000 (08:54 +0000)]
 - added clear button to DerivateSearchView
 - made use of cdmlib service to get associated specimen for one taxon (#4506)

8 years agomade bug fixes for:
Alexander Oppermann [Tue, 25 Nov 2014 14:23:48 +0000 (14:23 +0000)]
made bug fixes for:

* disabled rank editing support
* empty values are no longer displayed with a "-"
* Checklist Editor is now activated by default

8 years agochanged classpath to 3.5.0
Alexander Oppermann [Tue, 25 Nov 2014 12:56:30 +0000 (12:56 +0000)]
changed classpath to 3.5.0

8 years agoadded checks to makes sure no other exception is thrown within the dialog creation...
Cherian Mathew [Tue, 25 Nov 2014 12:33:21 +0000 (12:33 +0000)]
added checks to makes sure no other exception is thrown within the dialog creation code #4502.

8 years agochanged cdmlib version
Alexander Oppermann [Tue, 25 Nov 2014 12:13:40 +0000 (12:13 +0000)]
changed cdmlib version

8 years agolanguage display bug should be fixed
Alexander Oppermann [Tue, 25 Nov 2014 10:57:07 +0000 (10:57 +0000)]
language display bug should be fixed

8 years ago - added context menu entry to taxon navigator to open associated derivates in Deriva...
Patric Plitzner [Tue, 25 Nov 2014 09:02:07 +0000 (09:02 +0000)]
 - added context menu entry to taxon navigator to open associated derivates in DerivateEditor
 - added taxon filter to DerivateSearchView (non-functional) (#4506)

8 years agolatest changes from trunk
Alexander Oppermann [Mon, 24 Nov 2014 14:23:52 +0000 (14:23 +0000)]
latest changes from trunk

8 years ago - added some more molecular parameters to the DetailsView
Patric Plitzner [Mon, 24 Nov 2014 10:47:33 +0000 (10:47 +0000)]
 - added some more molecular parameters to the DetailsView

8 years ago - removed unused code
Patric Plitzner [Mon, 24 Nov 2014 10:16:04 +0000 (10:16 +0000)]
 - removed unused code

8 years ago - converted dnaQuality from DefinedTerm to OrderedTerm (#4434)
Patric Plitzner [Mon, 24 Nov 2014 09:12:50 +0000 (09:12 +0000)]
 - converted dnaQuality from DefinedTerm to OrderedTerm (#4434)

8 years ago - adapted to cdmlib changes (#4434)
Patric Plitzner [Mon, 24 Nov 2014 08:37:19 +0000 (08:37 +0000)]
 - adapted to cdmlib changes (#4434)

8 years ago - added preference for showing Collecting Areas below Country in DetailsView (#4473)
Patric Plitzner [Thu, 20 Nov 2014 13:53:04 +0000 (13:53 +0000)]
 - added preference for showing Collecting Areas below Country in DetailsView (#4473)

8 years ago - made use of TermType DnaQuality
Patric Plitzner [Thu, 20 Nov 2014 10:15:47 +0000 (10:15 +0000)]
 - made use of TermType DnaQuality

8 years ago - added static method to DerivateLabelProvider to get the derivate text
Patric Plitzner [Thu, 20 Nov 2014 09:42:51 +0000 (09:42 +0000)]
 - added static method to DerivateLabelProvider to get the derivate text
 - refactored moving of derivates to use the operation framework.
  - immplemented undo/redo

8 years ago - DerivateView and BulkEditor trigger selection change event for MediaViewPart ...
Patric Plitzner [Thu, 20 Nov 2014 09:41:33 +0000 (09:41 +0000)]
 - DerivateView and BulkEditor trigger selection change event for MediaViewPart (fixes #4475)

8 years ago - DerivedUnits DetailsView only shows FieldUnit data in titleCache (fixes #4474)
Patric Plitzner [Thu, 20 Nov 2014 09:36:31 +0000 (09:36 +0000)]
 - DerivedUnits DetailsView only shows FieldUnit data in titleCache (fixes #4474)
 - Areas section is now shown below country for FieldUnits (fixes 4473)

8 years ago - Rights section is now part of MediaSpecimen DetailsView (fixes #4472)
Patric Plitzner [Thu, 20 Nov 2014 09:34:28 +0000 (09:34 +0000)]
 - Rights section is now part of MediaSpecimen DetailsView (fixes #4472)
 - DerivedUnits DetailsView only shows FieldUnit data in titleCache (fixes #4474)

8 years agochanged icons for checklist editor
Alexander Oppermann [Wed, 19 Nov 2014 13:46:46 +0000 (13:46 +0000)]
changed icons for checklist editor

8 years agoremoved MediaView from perspective
Alexander Oppermann [Wed, 19 Nov 2014 12:06:56 +0000 (12:06 +0000)]
removed MediaView from perspective

8 years agoUpdate on ChecklistPerspective, added ConcepView
Alexander Oppermann [Tue, 18 Nov 2014 14:59:50 +0000 (14:59 +0000)]
Update on ChecklistPerspective, added ConcepView

8 years agoadded checklist perspective to taxonomic editor
Alexander Oppermann [Tue, 18 Nov 2014 14:22:36 +0000 (14:22 +0000)]
added checklist perspective to taxonomic editor

8 years ago - extended DerivateSearchView to allow multiple selection
Patric Plitzner [Tue, 18 Nov 2014 13:47:29 +0000 (13:47 +0000)]
 - extended DerivateSearchView to allow multiple selection
  - added context menu to open multiple elements in DerivateView
 - extended DerivateView to show multiple derivate hierarchies in one view

8 years agobranding the branch
Alexander Oppermann [Tue, 18 Nov 2014 13:04:09 +0000 (13:04 +0000)]
branding the branch

8 years agocreating branch for rl project
Alexander Oppermann [Tue, 18 Nov 2014 12:34:50 +0000 (12:34 +0000)]
creating branch for rl project

8 years agoremotingApplicationContext : now using the cachers from cdmlib
Cherian Mathew [Tue, 18 Nov 2014 09:28:01 +0000 (09:28 +0000)]
remotingApplicationContext : now using the cachers from cdmlib
CdmServiceCacher : added unimplemented method

8 years ago#4463 fixed
Katja Luther [Mon, 17 Nov 2014 12:39:46 +0000 (12:39 +0000)]
#4463 fixed
if a titlecache is updated and the position of the parsing problem is behind the actual text no position is created.

8 years ago - exported eu.etaxonomy.cdm.io.csv.redlist.demo package to fix compile errors
Patric Plitzner [Mon, 17 Nov 2014 09:54:35 +0000 (09:54 +0000)]
 - exported eu.etaxonomy.cdm.io.csv.redlist.demo package to fix compile errors

8 years agoAdded simple CSV Export to Taxonomic Editor
Alexander Oppermann [Fri, 14 Nov 2014 16:29:20 +0000 (16:29 +0000)]
Added simple CSV Export to Taxonomic Editor

8 years ago - updated molecular DetailsViews according to requirements
Patric Plitzner [Wed, 12 Nov 2014 14:35:23 +0000 (14:35 +0000)]
 - updated molecular DetailsViews according to requirements

8 years ago - used ImageFile instead of more generic MediaRepresentationPart when creating the...
Patric Plitzner [Wed, 12 Nov 2014 08:51:52 +0000 (08:51 +0000)]
 - used ImageFile instead of more generic MediaRepresentationPart when creating the Media (fixes #4402)
 - fixed a typo

8 years ago - moved OriginalLabelData section to 2nd position
Patric Plitzner [Tue, 11 Nov 2014 13:11:11 +0000 (13:11 +0000)]
 - moved OriginalLabelData section to 2nd position
   - made text field fill horizontally

8 years ago - refactored DerivateViewEditorInput to use UUIDs instead of CDM entities
Patric Plitzner [Tue, 11 Nov 2014 08:34:23 +0000 (08:34 +0000)]
 - refactored DerivateViewEditorInput to use UUIDs instead of CDM entities
 - added delete operation to DerivateView (currently only deleting leafs of the derivate tree is allowed)

8 years agofixing problems in bulkeditor and minor
Katja Luther [Mon, 10 Nov 2014 08:55:43 +0000 (08:55 +0000)]
fixing problems in bulkeditor and minor

8 years ago - fixed possible NPE
Patric Plitzner [Tue, 4 Nov 2014 14:54:51 +0000 (14:54 +0000)]
 - fixed possible NPE

8 years ago - used more pepresentative DerivationEventTypes when creating derivates via DerivatView
Patric Plitzner [Tue, 4 Nov 2014 13:56:39 +0000 (13:56 +0000)]
 - used more pepresentative DerivationEventTypes when creating derivates via DerivatView

8 years ago(no commit message)
Katja Luther [Thu, 30 Oct 2014 10:44:49 +0000 (10:44 +0000)]

8 years agofixing #2547
Katja Luther [Thu, 30 Oct 2014 10:43:43 +0000 (10:43 +0000)]
fixing #2547

8 years ago - fixed class cast exception
Patric Plitzner [Wed, 29 Oct 2014 14:50:10 +0000 (14:50 +0000)]
 - fixed class cast exception

8 years ago(no commit message)
Katja Luther [Wed, 29 Oct 2014 12:18:01 +0000 (12:18 +0000)]

8 years ago - added exception throwing to URI assembly in Sequence class
Patric Plitzner [Wed, 29 Oct 2014 10:39:34 +0000 (10:39 +0000)]
 - added exception throwing to URI assembly in Sequence class
 - handled exception in editor details view

8 years ago - added elevation to section title
Patric Plitzner [Wed, 29 Oct 2014 10:38:50 +0000 (10:38 +0000)]
 - added elevation to section title

8 years ago - applied coding conventions
Patric Plitzner [Wed, 29 Oct 2014 10:38:11 +0000 (10:38 +0000)]
 - applied coding conventions

8 years ago - fixed possible SessionException
Patric Plitzner [Wed, 29 Oct 2014 08:37:56 +0000 (08:37 +0000)]
 - fixed possible SessionException

8 years ago - adapted derivate hierarchy assembly to cdmlib3.4 changes (TissueSample, DnaSample...
Patric Plitzner [Tue, 28 Oct 2014 18:25:17 +0000 (18:25 +0000)]
 - adapted derivate hierarchy assembly to cdmlib3.4 changes (TissueSample, DnaSample as one class)

8 years agoeu.etaxonomy.taxeditor/pom.xml : reverted addition of nebula widget jars
Cherian Mathew [Tue, 28 Oct 2014 16:52:24 +0000 (16:52 +0000)]
eu.etaxonomy.taxeditor/pom.xml : reverted addition of nebula widget jars
pom.xml : changed nebula repository to archived one
eu.etaxonomy.taxeditor/rcp.target : changed composite table jar widget to the one in the repository

8 years agoremoved version dependency for org.eclipse.nebula.widgets.compositetable
Cherian Mathew [Tue, 28 Oct 2014 14:45:30 +0000 (14:45 +0000)]
removed version dependency for org.eclipse.nebula.widgets.compositetable
and added the composite table jar to the p2 update

8 years agofix #4450
Katja Luther [Tue, 28 Oct 2014 13:10:03 +0000 (13:10 +0000)]
fix #4450

8 years agoadded space between beta prefix and version
Cherian Mathew [Tue, 28 Oct 2014 08:53:06 +0000 (08:53 +0000)]
added space between beta prefix and version

8 years ago - fixed double exception dialog popup when not connected to data source
Patric Plitzner [Mon, 27 Oct 2014 12:48:42 +0000 (12:48 +0000)]
 - fixed double exception dialog popup when not connected to data source
 - fixed NPE when starting ABCD import with dirty editors

8 years ago - fixed possible NPE when entering DnaQuality data
Patric Plitzner [Mon, 27 Oct 2014 10:50:11 +0000 (10:50 +0000)]
 - fixed possible NPE when entering DnaQuality data