jenkins [Thu, 16 Jul 2015 08:03:22 +0000 (10:03 +0200)]
Revert project versions to -SNAPSHOT
jenkins [Thu, 16 Jul 2015 08:02:22 +0000 (10:02 +0200)]
Updated version in pom / project files to taxeditor version : 3.8.0-SNAPSHOT and cdmlib version : 3.8.0-SNAPSHOT
Cherian Mathew [Thu, 16 Jul 2015 08:01:10 +0000 (10:01 +0200)]
Updated version in pom / project files to taxeditor version : 3.7.0-SNAPSHOT and cdmlib version : 3.7.0-SNAPSHOT
jenkins [Thu, 16 Jul 2015 07:55:49 +0000 (09:55 +0200)]
updating poms for 3.8.0-SNAPSHOT development
jenkins [Thu, 16 Jul 2015 07:54:50 +0000 (09:54 +0200)]
Revert project versions to -SNAPSHOT
jenkins [Thu, 16 Jul 2015 07:53:46 +0000 (09:53 +0200)]
Updated version in pom / project files to taxeditor version : 3.8.0-SNAPSHOT and cdmlib version : 3.8.0-SNAPSHOT
Cherian Mathew [Thu, 16 Jul 2015 07:48:55 +0000 (09:48 +0200)]
Updated version in pom / project files to taxeditor version : 3.7.0-SNAPSHOT and cdmlib version : 3.7.0-SNAPSHOT
jenkins [Wed, 15 Jul 2015 16:40:07 +0000 (18:40 +0200)]
Updated version in pom / project files to taxeditor version : 3.8.0-SNAPSHOT and cdmlib version : 3.8.0-SNAPSHOT
jenkins [Wed, 15 Jul 2015 16:38:59 +0000 (18:38 +0200)]
updating poms for 3.8.0-SNAPSHOT development
Cherian Mathew [Wed, 15 Jul 2015 16:36:43 +0000 (18:36 +0200)]
Updated version in pom / project files to taxeditor version : 3.7.0-SNAPSHOT and cdmlib version : 3.7.0-SNAPSHOT
jenkins [Wed, 15 Jul 2015 16:35:53 +0000 (18:35 +0200)]
Merge branch 'release/3.7.0'
Conflicts:
eu.etaxonomy.taxeditor.feature/feature.xml
jenkins [Wed, 15 Jul 2015 16:31:03 +0000 (18:31 +0200)]
updating poms for branch'release/3.7.0' with non-snapshot versions
jenkins [Wed, 15 Jul 2015 16:30:05 +0000 (18:30 +0200)]
Revert project versions to 3.7.0-SNAPSHOT
jenkins [Wed, 15 Jul 2015 16:29:03 +0000 (18:29 +0200)]
Updated version in pom / project files to taxeditor version : 3.7.0 and cdmlib version : 3.7.0
jenkins [Wed, 15 Jul 2015 16:27:59 +0000 (18:27 +0200)]
Updated version in pom / project files to taxeditor version : 3.8.0-SNAPSHOT and cdmlib version : 3.8.0-SNAPSHOT
jenkins [Wed, 15 Jul 2015 16:26:52 +0000 (18:26 +0200)]
updating poms for 3.8.0-SNAPSHOT development
jenkins [Wed, 15 Jul 2015 16:26:51 +0000 (18:26 +0200)]
updating poms for 3.7.0 branch with snapshot versions
Cherian Mathew [Wed, 15 Jul 2015 15:57:22 +0000 (17:57 +0200)]
Updated version in pom / project files to taxeditor version : 3.7.0-SNAPSHOT and cdmlib version : 3.7.0-SNAPSHOT
jenkins [Wed, 15 Jul 2015 15:56:02 +0000 (17:56 +0200)]
Merge branch 'release/3.7.0'
Conflicts:
eu.etaxonomy.taxeditor.application/META-INF/MANIFEST.MF
eu.etaxonomy.taxeditor.bulkeditor/META-INF/MANIFEST.MF
eu.etaxonomy.taxeditor.cdmlib/.classpath
eu.etaxonomy.taxeditor.cdmlib/META-INF/MANIFEST.MF
eu.etaxonomy.taxeditor.editor/META-INF/MANIFEST.MF
eu.etaxonomy.taxeditor.feature.platform/feature.xml
eu.etaxonomy.taxeditor.feature/feature.xml
eu.etaxonomy.taxeditor.help/META-INF/MANIFEST.MF
eu.etaxonomy.taxeditor.navigation/META-INF/MANIFEST.MF
eu.etaxonomy.taxeditor.printpublisher/META-INF/MANIFEST.MF
eu.etaxonomy.taxeditor.store/META-INF/MANIFEST.MF
eu.etaxonomy.taxeditor.test/META-INF/MANIFEST.MF
jenkins [Wed, 15 Jul 2015 15:32:14 +0000 (17:32 +0200)]
updating poms for branch'release/3.7.0' with non-snapshot versions
jenkins [Wed, 15 Jul 2015 15:31:21 +0000 (17:31 +0200)]
Revert project versions to 3.7.0-SNAPSHOT
jenkins [Wed, 15 Jul 2015 15:30:25 +0000 (17:30 +0200)]
Updated version in pom / project files to taxeditor version : 3.7.0 and cdmlib version : 3.7.0
jenkins [Wed, 15 Jul 2015 15:26:06 +0000 (17:26 +0200)]
Updated version in pom / project files to taxeditor version : 3.8.0-SNAPSHOT and cdmlib version : 3.8.0-SNAPSHOT
jenkins [Wed, 15 Jul 2015 15:25:03 +0000 (17:25 +0200)]
updating poms for 3.8.0-SNAPSHOT development
jenkins [Wed, 15 Jul 2015 15:25:02 +0000 (17:25 +0200)]
updating poms for 3.7.0 branch with snapshot versions
Cherian Mathew [Wed, 15 Jul 2015 15:21:15 +0000 (17:21 +0200)]
Updated version in pom / project files to taxeditor version : 3.7.0-SNAPSHOT and cdmlib version : 3.7.0-SNAPSHOT
jenkins [Wed, 15 Jul 2015 15:03:48 +0000 (17:03 +0200)]
Updated version in pom / project files to taxeditor version : 3.8.0-SNAPSHOT and cdmlib version : 3.8.0-SNAPSHOT
jenkins [Wed, 15 Jul 2015 15:02:46 +0000 (17:02 +0200)]
updating poms for 3.8.0-SNAPSHOT development
Cherian Mathew [Wed, 15 Jul 2015 15:00:50 +0000 (17:00 +0200)]
Updated version in pom / project files to taxeditor version : 3.7.0-SNAPSHOT and cdmlib version : 3.7.0-SNAPSHOT
jenkins [Wed, 15 Jul 2015 14:52:54 +0000 (16:52 +0200)]
Updated version in pom / project files to taxeditor version : 3.8.0-SNAPSHOT and cdmlib version : 3.8.0-SNAPSHOT
jenkins [Wed, 15 Jul 2015 14:51:49 +0000 (16:51 +0200)]
updating poms for 3.8.0-SNAPSHOT development
Cherian Mathew [Wed, 15 Jul 2015 14:50:00 +0000 (16:50 +0200)]
Updated version in pom / project files to taxeditor version : 3.7.0-SNAPSHOT and cdmlib version : 3.7.0-SNAPSHOT
Jenkins [Wed, 15 Jul 2015 14:03:35 +0000 (16:03 +0200)]
Updated version in pom / project files to taxeditor version : 3.8.0-SNAPSHOT and cdmlib version : 3.8.0-SNAPSHOT
jenkins [Wed, 15 Jul 2015 14:01:47 +0000 (16:01 +0200)]
updating poms for 3.8.0-SNAPSHOT development
Cherian Mathew [Wed, 15 Jul 2015 13:56:09 +0000 (15:56 +0200)]
Updated version in pom / project files to taxeditor version : 3.7.0-SNAPSHOT and cdmlib version : 3.7.0-SNAPSHOT
Jenkins [Wed, 15 Jul 2015 13:49:26 +0000 (15:49 +0200)]
Updated version in pom / project files to taxeditor version : 3.8.0-SNAPSHOT and cdmlib version : 3.8.0-SNAPSHOT
jenkins [Wed, 15 Jul 2015 13:49:19 +0000 (15:49 +0200)]
updating poms for 3.8.0-SNAPSHOT development
Cherian Mathew [Wed, 15 Jul 2015 13:47:24 +0000 (15:47 +0200)]
Updated version in pom / project files to taxeditor version : 3.7.0-SNAPSHOT and cdmlib version : 3.7.0-SNAPSHOT
Jenkins [Wed, 15 Jul 2015 13:31:53 +0000 (15:31 +0200)]
Updated version in pom / project files to taxeditor version : 3.8.0-SNAPSHOT and cdmlib version : 3.8.0-SNAPSHOT
jenkins [Wed, 15 Jul 2015 13:31:46 +0000 (15:31 +0200)]
updating poms for 3.8.0-SNAPSHOT development
Cherian Mathew [Wed, 15 Jul 2015 13:29:26 +0000 (15:29 +0200)]
Updated version in pom / project files to taxeditor version : 3.7.0-SNAPSHOT and cdmlib version : 3.7.0-SNAPSHOT
Cherian Mathew [Wed, 15 Jul 2015 13:26:56 +0000 (15:26 +0200)]
Correct jgitflow plugin dependency
Jenkins [Wed, 15 Jul 2015 13:17:51 +0000 (15:17 +0200)]
Updated version in pom / project files to taxeditor version : 3.8.0-SNAPSHOT and cdmlib version : 3.8.0-SNAPSHOT
jenkins [Wed, 15 Jul 2015 13:17:41 +0000 (15:17 +0200)]
updating poms for 3.8.0-SNAPSHOT development
Cherian Mathew [Wed, 15 Jul 2015 12:25:04 +0000 (14:25 +0200)]
Update jgitlfow version
Cherian Mathew [Wed, 15 Jul 2015 12:14:30 +0000 (14:14 +0200)]
Updated version in pom / project files to taxeditor version : 3.7.0-SNAPSHOT and cdmlib version : 3.7.0-SNAPSHOT
Patric Plitzner [Wed, 15 Jul 2015 12:09:21 +0000 (12:09 +0000)]
Fix menu contributions
Patric Plitzner [Wed, 15 Jul 2015 11:30:09 +0000 (11:30 +0000)]
Reverted all LibrAlign changes (are now in molecular project)
Patric Plitzner [Wed, 15 Jul 2015 11:26:42 +0000 (11:26 +0000)]
Reverted all LibrAlign changes (are now in molecular project)
Patric Plitzner [Wed, 15 Jul 2015 11:00:51 +0000 (11:00 +0000)]
Dependency refactoring
Arranged classes and classpath in accordance to other taxeditor projects.
Patric Plitzner [Wed, 15 Jul 2015 10:43:01 +0000 (10:43 +0000)]
- removed dependencies to LibrAlign
Patric Plitzner [Wed, 15 Jul 2015 09:18:13 +0000 (09:18 +0000)]
- added handler to exported packages
Patric Plitzner [Wed, 15 Jul 2015 08:48:35 +0000 (08:48 +0000)]
- added molecular plugin to the feature
Patric Plitzner [Wed, 15 Jul 2015 08:48:17 +0000 (08:48 +0000)]
- moved "Add..." menu item to the bottom to avoid other items not to be drawn
Patric Plitzner [Wed, 15 Jul 2015 08:47:19 +0000 (08:47 +0000)]
- fixed dependencies
Patric Plitzner [Wed, 15 Jul 2015 08:44:57 +0000 (08:44 +0000)]
Initial import of aggregator project files.
The pom.xml configures which modules are aggragated.
Patric Plitzner [Wed, 15 Jul 2015 08:38:06 +0000 (08:38 +0000)]
Initial import of aggregator project.
This is used for handling the dependencies of the LibrAlign integration.
Patric Plitzner [Wed, 15 Jul 2015 07:24:38 +0000 (07:24 +0000)]
Cleaning up
Delete target folder
b.stoever [Tue, 14 Jul 2015 14:23:54 +0000 (14:23 +0000)]
Missing LibrAlign BioJava1 dependency added to molecular plugin project.
Patric Plitzner [Tue, 14 Jul 2015 13:25:23 +0000 (13:25 +0000)]
- added jars to svn:ignore
Patric Plitzner [Tue, 14 Jul 2015 13:07:15 +0000 (13:07 +0000)]
Add lib folder for external dependencies
Patric Plitzner [Tue, 14 Jul 2015 12:20:50 +0000 (12:20 +0000)]
Initial import of plugin files
Patric Plitzner [Tue, 14 Jul 2015 12:19:27 +0000 (12:19 +0000)]
Initial import of separated plugin which holds all changes related to LibrAlign integration
Patric Plitzner [Mon, 13 Jul 2015 08:20:22 +0000 (08:20 +0000)]
merge-update from trunk
Patrick Plitzner [Wed, 8 Jul 2015 18:31:02 +0000 (20:31 +0200)]
Make cell text in ReferencingObjectsView selectable
Patrick Plitzner [Wed, 8 Jul 2015 18:27:26 +0000 (20:27 +0200)]
Remove comments
Patric Plitzner [Wed, 8 Jul 2015 12:50:55 +0000 (12:50 +0000)]
merge-update from trunk
Patrick Plitzner [Wed, 8 Jul 2015 05:41:33 +0000 (07:41 +0200)]
Externalize cdmViewer extension point parsing
Patrick Plitzner [Tue, 7 Jul 2015 14:37:10 +0000 (16:37 +0200)]
Add generic context menu for ICdmViewer framework
Patrick Plitzner [Tue, 7 Jul 2015 14:36:18 +0000 (16:36 +0200)]
Refactor ICdmViewer framework
Removed unnecessary ExecutionEvent
Andreas Müller [Tue, 7 Jul 2015 13:04:55 +0000 (15:04 +0200)]
Revert incorrect fix (r24331) for taxon titleCache #5018
Patric Plitzner [Tue, 7 Jul 2015 12:57:20 +0000 (12:57 +0000)]
Fix conversion of ShiftChanges to Shifts
Cherian Mathew [Tue, 7 Jul 2015 12:13:26 +0000 (14:13 +0200)]
Make editor transient term service compatible with cdmlib term service
Patric Plitzner [Tue, 7 Jul 2015 12:11:27 +0000 (12:11 +0000)]
Use UUIDs instead of CDM objects in AlignmentEditorInput
This avoids session conflicts because the object will be loaded into the correct session when processing the editor input during initialization of the editor.
Patric Plitzner [Tue, 7 Jul 2015 11:53:57 +0000 (11:53 +0000)]
Re-load sequence to avoid session conflicts.
Patrick Plitzner [Mon, 6 Jul 2015 13:11:20 +0000 (15:11 +0200)]
Display URI parsing errors
Patrick Plitzner [Mon, 6 Jul 2015 13:10:59 +0000 (15:10 +0200)]
Remove comments
b.stoever [Sun, 5 Jul 2015 20:55:48 +0000 (20:55 +0000)]
Adjustments to recent module changes in bioinfweb.commons.
b.stoever [Fri, 3 Jul 2015 14:26:11 +0000 (14:26 +0000)]
AlignmentEditor.createTestContents() marked as deprecated.
b.stoever [Fri, 3 Jul 2015 10:28:54 +0000 (10:28 +0000)]
InternalError thrown, if a single read alignment shall be saved that contains new single reads, which have been added in the AlignmentEditor. (Implementation does not make sense before the decision whether #4740, #4745 or #4746 shall be implemented.)
b.stoever [Fri, 3 Jul 2015 10:20:00 +0000 (10:20 +0000)]
Error message added, if a pherogram URL loaded from CDM cannot be processed correctly.
b.stoever [Fri, 3 Jul 2015 10:09:31 +0000 (10:09 +0000)]
Fixed NPE, if a single read has a pherogram object without URI.
Cherian Mathew [Fri, 3 Jul 2015 10:04:00 +0000 (12:04 +0200)]
#5056 Adapt editor to service layer 'save' method refactoring in cdmlib
b.stoever [Thu, 2 Jul 2015 11:11:16 +0000 (11:11 +0000)]
Adjustments to recent changes in LibrAlign.
(The additional project https://secure.bioinfweb.info/Code/svn/LibrAlign / trunk / main / info.bioinfweb.libralign.biojava1 needs to be in the workspace from now on.)
Cherian Mathew [Thu, 2 Jul 2015 09:15:14 +0000 (11:15 +0200)]
Make editor compatible with latest cdmlib service layer updates
b.stoever [Wed, 1 Jul 2015 16:06:55 +0000 (16:06 +0000)]
Minor changes in implementation of AlignmentEditor.
b.stoever [Wed, 1 Jul 2015 16:03:18 +0000 (16:03 +0000)]
ShowPherogramHandler now also handles single reads without attached pherograms.
Andreas Müller [Wed, 1 Jul 2015 15:44:43 +0000 (17:44 +0200)]
Fix compile error in FeatureDistributionDetailElement
b.stoever [Wed, 1 Jul 2015 15:34:19 +0000 (15:34 +0000)]
Support for empty alignments and single reads without pherograms added to AlignmentEditor.
DerivateLabelProvider now used to label single read sequences.
b.stoever [Wed, 1 Jul 2015 09:34:55 +0000 (09:34 +0000)]
Class path edited to include new modules from LibrAlign and TIC.
b.stoever [Wed, 1 Jul 2015 09:31:11 +0000 (09:31 +0000)]
Adjustments to recent architecture changes in TIC and LibrAlign. (TIC top level project referenced from now on.)
The following projects need to be checked out into the workspace from now on:
- https://secure.bioinfweb.info/Code/svn/commons.java/trunk/main
- https://secure.bioinfweb.info/Code/svn/TIC/trunk/main/info.bioinfweb.tic.core
- https://secure.bioinfweb.info/Code/svn/TIC/trunk/main/info.bioinfweb.tic.swt
- https://secure.bioinfweb.info/Code/svn/LibrAlign/trunk/main/info.bioinfweb.libralign.core
- https://secure.bioinfweb.info/Code/svn/LibrAlign/trunk/main/info.bioinfweb.libralign.swt
Patric Plitzner [Wed, 1 Jul 2015 09:09:33 +0000 (09:09 +0000)]
merge-update from trunk
Patrick Plitzner [Wed, 1 Jul 2015 07:16:17 +0000 (09:16 +0200)]
Fix deletion of single reads in Derivative Editor
Patrick Plitzner [Wed, 1 Jul 2015 07:15:39 +0000 (09:15 +0200)]
Add missing transient method
Patrick Plitzner [Wed, 1 Jul 2015 07:23:39 +0000 (09:23 +0200)]
Map preparation materials to derivation event description
Patric Plitzner [Tue, 30 Jun 2015 13:04:15 +0000 (13:04 +0000)]
merge-update from trunk
Patrick Plitzner [Tue, 30 Jun 2015 11:47:51 +0000 (13:47 +0200)]
Make background of icon transparent
Patrick Plitzner [Mon, 29 Jun 2015 14:01:34 +0000 (16:01 +0200)]
Add icon for switching to advanced media view
Patric Plitzner [Mon, 29 Jun 2015 13:25:18 +0000 (13:25 +0000)]
merge-update from trunk
Cherian Mathew [Mon, 29 Jun 2015 12:52:58 +0000 (14:52 +0200)]
Update transient services with new delete method
BGBM BDI Projects / taxeditor.git / log