taxeditor.git
7 years agomerge-update from trunk
Patric Plitzner [Tue, 4 Nov 2014 09:41:17 +0000 (09:41 +0000)]
merge-update from trunk

7 years ago(no commit message)
Katja Luther [Thu, 30 Oct 2014 10:44:49 +0000 (10:44 +0000)]

7 years agofixing #2547
Katja Luther [Thu, 30 Oct 2014 10:43:43 +0000 (10:43 +0000)]
fixing #2547

7 years ago - fixed class cast exception
Patric Plitzner [Wed, 29 Oct 2014 14:50:10 +0000 (14:50 +0000)]
 - fixed class cast exception

7 years ago(no commit message)
Katja Luther [Wed, 29 Oct 2014 12:18:01 +0000 (12:18 +0000)]

7 years ago - added exception throwing to URI assembly in Sequence class
Patric Plitzner [Wed, 29 Oct 2014 10:39:34 +0000 (10:39 +0000)]
 - added exception throwing to URI assembly in Sequence class
 - handled exception in editor details view

7 years ago - added elevation to section title
Patric Plitzner [Wed, 29 Oct 2014 10:38:50 +0000 (10:38 +0000)]
 - added elevation to section title

7 years ago - applied coding conventions
Patric Plitzner [Wed, 29 Oct 2014 10:38:11 +0000 (10:38 +0000)]
 - applied coding conventions

7 years ago - fixed possible SessionException
Patric Plitzner [Wed, 29 Oct 2014 08:37:56 +0000 (08:37 +0000)]
 - fixed possible SessionException

7 years ago - adapted derivate hierarchy assembly to cdmlib3.4 changes (TissueSample, DnaSample...
Patric Plitzner [Tue, 28 Oct 2014 18:25:17 +0000 (18:25 +0000)]
 - adapted derivate hierarchy assembly to cdmlib3.4 changes (TissueSample, DnaSample as one class)

7 years agoeu.etaxonomy.taxeditor/pom.xml : reverted addition of nebula widget jars
Cherian Mathew [Tue, 28 Oct 2014 16:52:24 +0000 (16:52 +0000)]
eu.etaxonomy.taxeditor/pom.xml : reverted addition of nebula widget jars
pom.xml : changed nebula repository to archived one
eu.etaxonomy.taxeditor/rcp.target : changed composite table jar widget to the one in the repository

7 years agoremoved version dependency for org.eclipse.nebula.widgets.compositetable
Cherian Mathew [Tue, 28 Oct 2014 14:45:30 +0000 (14:45 +0000)]
removed version dependency for org.eclipse.nebula.widgets.compositetable
and added the composite table jar to the p2 update

7 years agofix #4450
Katja Luther [Tue, 28 Oct 2014 13:10:03 +0000 (13:10 +0000)]
fix #4450

7 years agoadded space between beta prefix and version
Cherian Mathew [Tue, 28 Oct 2014 08:53:06 +0000 (08:53 +0000)]
added space between beta prefix and version

7 years agoBasic implementation for LoadPherogramHandler added. (Imported data is currently...
b.stoever [Mon, 27 Oct 2014 15:33:59 +0000 (15:33 +0000)]
Basic implementation for LoadPherogramHandler added. (Imported data is currently not displayed due to currently unimplemented support for adding sequences and data areas during runtime in LibrAlign.)

7 years agoExample in AlignmentEditor now relies on an editable SequenceDataProvider (and contai...
b.stoever [Mon, 27 Oct 2014 14:53:21 +0000 (14:53 +0000)]
Example in AlignmentEditor now relies on an editable SequenceDataProvider (and contains not more predefined base call alignment edits).
Minor changes.

7 years agoComments added to LoadPherogramHandler.
b.stoever [Mon, 27 Oct 2014 14:35:52 +0000 (14:35 +0000)]
Comments added to LoadPherogramHandler.
Pherogram example file paths adjusted again. (This time the other ones are still present as comments.)

7 years agomerge-update from trunk
Patric Plitzner [Mon, 27 Oct 2014 13:45:51 +0000 (13:45 +0000)]
merge-update from trunk

7 years agomerge-update from trunk
Patric Plitzner [Mon, 27 Oct 2014 13:45:36 +0000 (13:45 +0000)]
merge-update from trunk

7 years ago - fixed double exception dialog popup when not connected to data source
Patric Plitzner [Mon, 27 Oct 2014 12:48:42 +0000 (12:48 +0000)]
 - fixed double exception dialog popup when not connected to data source
 - fixed NPE when starting ABCD import with dirty editors

7 years ago - fixed possible NPE when entering DnaQuality data
Patric Plitzner [Mon, 27 Oct 2014 10:50:11 +0000 (10:50 +0000)]
 - fixed possible NPE when entering DnaQuality data

7 years ago - implemented missing interface method
Patric Plitzner [Mon, 27 Oct 2014 09:22:29 +0000 (09:22 +0000)]
 - implemented missing interface method

7 years agochanged beta prefix back to beta
Cherian Mathew [Fri, 24 Oct 2014 08:22:25 +0000 (08:22 +0000)]
changed beta prefix back to beta

7 years agoAdjustments to recent changes in LibrAlign.
b.stoever [Wed, 22 Oct 2014 21:48:55 +0000 (21:48 +0000)]
Adjustments to recent changes in LibrAlign.

7 years ago - added kind of tissue to TissueSampleDetailsView
Patric Plitzner [Wed, 22 Oct 2014 13:42:08 +0000 (13:42 +0000)]
 - added kind of tissue to TissueSampleDetailsView

7 years ago - added TODO
Patric Plitzner [Wed, 22 Oct 2014 13:36:31 +0000 (13:36 +0000)]
 - added TODO

7 years agoreintegrated taxeditor-3.4 branch into trunk
Patric Plitzner [Wed, 22 Oct 2014 12:59:25 +0000 (12:59 +0000)]
reintegrated taxeditor-3.4 branch into trunk

7 years agomerge-update from trunk taxeditor-3.4 root/branches/taxeditor/taxeditor-3.4
Patric Plitzner [Wed, 22 Oct 2014 12:42:13 +0000 (12:42 +0000)]
merge-update from trunk

7 years ago - generalized sample designation GUI elements
Patric Plitzner [Wed, 22 Oct 2014 11:57:52 +0000 (11:57 +0000)]
 - generalized sample designation GUI elements
 - added sample designation to TissueSample details view
 - added some more parameters to TissueSample details view

7 years agomerge-update from trunk
Patric Plitzner [Tue, 21 Oct 2014 12:45:04 +0000 (12:45 +0000)]
merge-update from trunk

7 years ago - added empty "Delete Derivate" functionality to DerivateView
Patric Plitzner [Tue, 21 Oct 2014 12:44:52 +0000 (12:44 +0000)]
 - added empty "Delete Derivate" functionality to DerivateView

7 years ago - removed unused package
Patric Plitzner [Tue, 21 Oct 2014 11:44:23 +0000 (11:44 +0000)]
 - removed unused package

7 years agomerge-update from trunk
Patric Plitzner [Tue, 21 Oct 2014 10:42:04 +0000 (10:42 +0000)]
merge-update from trunk

7 years ago - extended DnaQuality details view
Patric Plitzner [Tue, 21 Oct 2014 10:41:34 +0000 (10:41 +0000)]
 - extended DnaQuality details view
 - refactored DateElement creation

7 years ago - added more paramaters to DnaQuality details view
Patric Plitzner [Tue, 21 Oct 2014 07:43:21 +0000 (07:43 +0000)]
 - added more paramaters to DnaQuality details view
 - fixed ordering of sample designations for DnaSamples (first is current)

7 years ago - added some detail elements
Patric Plitzner [Mon, 20 Oct 2014 15:12:41 +0000 (15:12 +0000)]
 - added some detail elements

7 years ago - refresh after updating datasource (fixes #2117)
Patric Plitzner [Mon, 20 Oct 2014 15:12:29 +0000 (15:12 +0000)]
 - refresh after updating datasource (fixes #2117)

7 years ago - adapted to cdmlib changes
Patric Plitzner [Mon, 20 Oct 2014 15:11:46 +0000 (15:11 +0000)]
 - adapted to cdmlib changes

7 years agodeleted project from trunk to work on branch
Cherian Mathew [Mon, 20 Oct 2014 11:50:14 +0000 (11:50 +0000)]
deleted project from trunk to work on branch

7 years agomerge-update from trunk
Patric Plitzner [Mon, 20 Oct 2014 11:19:09 +0000 (11:19 +0000)]
merge-update from trunk

7 years agoadding license text to feature projects since these were removed from feature.xml
Cherian Mathew [Mon, 20 Oct 2014 11:08:32 +0000 (11:08 +0000)]
adding license text to feature projects since these were removed from feature.xml

7 years agoadded polytomous key tests and initial developments on caching
Cherian Mathew [Mon, 20 Oct 2014 11:05:56 +0000 (11:05 +0000)]
added polytomous key tests and initial developments on caching

7 years agoupdated CDMServer and corresponding test files to use dbunit datasets with the possib...
Cherian Mathew [Mon, 20 Oct 2014 10:59:37 +0000 (10:59 +0000)]
updated CDMServer and corresponding test files to use dbunit datasets with the possibility
of targetting a managed as well as external instance of the CDMServer

7 years agoadded required jars and setup svn:ignore property using .svnignore
Cherian Mathew [Mon, 20 Oct 2014 10:57:19 +0000 (10:57 +0000)]
added required jars and setup svn:ignore property using .svnignore

7 years ago - added sampleDesignation section to DnaSample details view (#4237)
Patric Plitzner [Mon, 20 Oct 2014 08:47:23 +0000 (08:47 +0000)]
 - added sampleDesignation section to DnaSample details view (#4237)
 - added sampleDesignation to DerivateLabelProvider

7 years ago - re-enabled specimen type chooser
Patric Plitzner [Mon, 20 Oct 2014 08:45:19 +0000 (08:45 +0000)]
 - re-enabled specimen type chooser

7 years ago - adapted method calls to cdmlib changes
Patric Plitzner [Mon, 20 Oct 2014 08:21:56 +0000 (08:21 +0000)]
 - adapted method calls to cdmlib changes

7 years ago - removed unused extension
Patric Plitzner [Thu, 16 Oct 2014 11:08:47 +0000 (11:08 +0000)]
 - removed unused extension

7 years ago - added temporary shortcut "o" for opening a file chooser to load a pherogram
Patric Plitzner [Thu, 16 Oct 2014 09:23:21 +0000 (09:23 +0000)]
 - added temporary shortcut "o" for opening a file chooser to load a pherogram

7 years agomerge-update from trunk
Patric Plitzner [Thu, 16 Oct 2014 07:50:47 +0000 (07:50 +0000)]
merge-update from trunk

7 years agomerge-update from trunk
Patric Plitzner [Thu, 16 Oct 2014 07:20:07 +0000 (07:20 +0000)]
merge-update from trunk

7 years ago - removed visibleWhen parameter for command
Patric Plitzner [Thu, 16 Oct 2014 07:16:53 +0000 (07:16 +0000)]
 - removed visibleWhen parameter for command

7 years ago - removed personal home folder
Patric Plitzner [Tue, 14 Oct 2014 14:40:51 +0000 (14:40 +0000)]
 - removed personal home folder

7 years ago - added experimental key binding for 'a' for the AlignmentEditor
Patric Plitzner [Tue, 14 Oct 2014 14:14:59 +0000 (14:14 +0000)]
 - added experimental key binding for 'a' for the AlignmentEditor

7 years agomerge-update from trunk
Patric Plitzner [Tue, 14 Oct 2014 11:53:44 +0000 (11:53 +0000)]
merge-update from trunk

7 years agomerge-update from trunk
Patric Plitzner [Tue, 14 Oct 2014 11:53:31 +0000 (11:53 +0000)]
merge-update from trunk

7 years ago(no commit message)
Katja Luther [Tue, 14 Oct 2014 11:52:22 +0000 (11:52 +0000)]

7 years ago(no commit message)
Katja Luther [Tue, 14 Oct 2014 11:51:54 +0000 (11:51 +0000)]

7 years ago(no commit message)
Katja Luther [Tue, 14 Oct 2014 11:49:25 +0000 (11:49 +0000)]

7 years agomerge-update from trunk
Patric Plitzner [Tue, 14 Oct 2014 11:42:23 +0000 (11:42 +0000)]
merge-update from trunk

7 years ago - committed changed classpath
Patric Plitzner [Tue, 14 Oct 2014 11:18:25 +0000 (11:18 +0000)]
 - committed changed classpath

7 years ago - fixed focus problem of MediaViewPart
Patric Plitzner [Tue, 14 Oct 2014 11:16:21 +0000 (11:16 +0000)]
 - fixed focus problem of MediaViewPart

7 years agomerge-update from trunk
Patric Plitzner [Tue, 14 Oct 2014 10:58:51 +0000 (10:58 +0000)]
merge-update from trunk

7 years ago(no commit message)
Katja Luther [Tue, 14 Oct 2014 10:58:02 +0000 (10:58 +0000)]

7 years agomerge-update from trunk
Patric Plitzner [Tue, 14 Oct 2014 10:51:10 +0000 (10:51 +0000)]
merge-update from trunk

7 years ago(no commit message)
Katja Luther [Tue, 14 Oct 2014 10:50:53 +0000 (10:50 +0000)]

7 years ago(no commit message)
Katja Luther [Tue, 14 Oct 2014 10:50:31 +0000 (10:50 +0000)]

7 years ago(no commit message)
Katja Luther [Tue, 14 Oct 2014 10:48:35 +0000 (10:48 +0000)]

7 years ago(no commit message)
Katja Luther [Tue, 14 Oct 2014 10:47:47 +0000 (10:47 +0000)]

7 years agomerge-update from trunk
Patric Plitzner [Tue, 14 Oct 2014 10:45:33 +0000 (10:45 +0000)]
merge-update from trunk

7 years agoAlignmentEditor adjusted to recent changes in LibrAlign.
b.stoever [Tue, 14 Oct 2014 10:10:19 +0000 (10:10 +0000)]
AlignmentEditor adjusted to recent changes in LibrAlign.

7 years agoadded sanity checks for delimiters
Cherian Mathew [Tue, 14 Oct 2014 08:48:46 +0000 (08:48 +0000)]
added sanity checks for delimiters

7 years agopom.xml : comment for the file permissions problem
Cherian Mathew [Tue, 14 Oct 2014 08:19:29 +0000 (08:19 +0000)]
pom.xml : comment for the file permissions problem
eu.etaxonomy.taxeditor.application/META-INF/MANIFEST.MF : removed version numbers and added plugin for repository metadata
ApplicationWorkbenchWindowAdvisor : added saving of repositories to post window close
P2Util, PreferencesUtil, PreferencesUtil  : added loading / saving of repositories from / to preference store
eu.etaxonomy.taxeditor.store/META-INF/MANIFEST.MF : added plugin for repository metadata

7 years ago - added delete command to DerivateView
Patric Plitzner [Tue, 14 Oct 2014 07:41:39 +0000 (07:41 +0000)]
 - added delete command to DerivateView

7 years ago - when editing a CDM entity in an EditFromSelectionWizard the entity will be cloned...
Patric Plitzner [Tue, 14 Oct 2014 07:26:29 +0000 (07:26 +0000)]
 - when editing a CDM entity in an EditFromSelectionWizard the entity will be cloned before editing.
 - when hitting "Finish" the entity will be merged with the original.
 - when hitting "Cancel" the merging will not be made and the changes will be ignored -> this fixes #2645

7 years ago - added java doc
Patric Plitzner [Tue, 14 Oct 2014 07:24:16 +0000 (07:24 +0000)]
 - added java doc
 - specified method parameter

7 years ago - rename IDirtyMarkableSelectionProvider to IDirtyMarkable
Patric Plitzner [Tue, 14 Oct 2014 07:23:35 +0000 (07:23 +0000)]
 - rename IDirtyMarkableSelectionProvider to IDirtyMarkable
 - extended interface IDirtyMarkable #2645
  - added method forceDirty()

7 years ago - removed merge conflict text
Patric Plitzner [Tue, 14 Oct 2014 07:09:41 +0000 (07:09 +0000)]
 - removed merge conflict text

7 years agomerge-update from trunk
Patric Plitzner [Mon, 13 Oct 2014 12:56:08 +0000 (12:56 +0000)]
merge-update from trunk

7 years ago(no commit message)
Katja Luther [Mon, 13 Oct 2014 12:50:21 +0000 (12:50 +0000)]

7 years agofix #2187
Katja Luther [Mon, 13 Oct 2014 12:02:58 +0000 (12:02 +0000)]
fix #2187

7 years agomerge-update from trunk
Patric Plitzner [Mon, 13 Oct 2014 11:51:58 +0000 (11:51 +0000)]
merge-update from trunk

7 years agodisabled constraints
Cherian Mathew [Thu, 9 Oct 2014 14:32:52 +0000 (14:32 +0000)]
disabled constraints

7 years agoreset db
Cherian Mathew [Thu, 9 Oct 2014 14:30:49 +0000 (14:30 +0000)]
reset db

7 years agoincreased version number
Patric Plitzner [Thu, 9 Oct 2014 13:42:35 +0000 (13:42 +0000)]
increased version number

7 years agoadapted cdmlib dependencies
Patric Plitzner [Thu, 9 Oct 2014 13:34:28 +0000 (13:34 +0000)]
adapted cdmlib dependencies

7 years agomerge-update from trunk
Patric Plitzner [Thu, 9 Oct 2014 13:31:25 +0000 (13:31 +0000)]
merge-update from trunk

7 years agoincreased version number
Patric Plitzner [Thu, 9 Oct 2014 13:17:42 +0000 (13:17 +0000)]
increased version number

7 years agoregenerated empty h2 cdm db
Cherian Mathew [Thu, 9 Oct 2014 12:56:43 +0000 (12:56 +0000)]
regenerated empty h2 cdm db

7 years agoincreased version number
Patric Plitzner [Thu, 9 Oct 2014 12:51:20 +0000 (12:51 +0000)]
increased version number

7 years agomoving h2 dir
Cherian Mathew [Thu, 9 Oct 2014 12:26:50 +0000 (12:26 +0000)]
moving h2 dir

7 years agomerge-update from trunk
Patric Plitzner [Thu, 9 Oct 2014 11:21:55 +0000 (11:21 +0000)]
merge-update from trunk

7 years ago(no commit message)
Katja Luther [Thu, 9 Oct 2014 09:46:14 +0000 (09:46 +0000)]

7 years ago(no commit message)
Katja Luther [Thu, 9 Oct 2014 09:45:46 +0000 (09:45 +0000)]

7 years ago - removed workbenchShutdown actions because the editor cannot be closed if they...
Patric Plitzner [Wed, 8 Oct 2014 11:40:41 +0000 (11:40 +0000)]
 - removed workbenchShutdown actions because the editor cannot be closed if they fail

7 years agoadded spring repositories
Cherian Mathew [Wed, 8 Oct 2014 11:12:29 +0000 (11:12 +0000)]
added spring repositories

7 years agoremoving tests since they have moved to eu.etaxonomy.taxeditor.remoting
Cherian Mathew [Mon, 6 Oct 2014 15:03:27 +0000 (15:03 +0000)]
removing tests since they have moved to eu.etaxonomy.taxeditor.remoting

7 years agoset svn:ignore on lib dir and removed auto dounloaded webapp war file
Cherian Mathew [Mon, 6 Oct 2014 15:00:31 +0000 (15:00 +0000)]
set svn:ignore on lib dir and removed auto dounloaded webapp war file

7 years agoremoving target dir from svn control
Cherian Mathew [Mon, 6 Oct 2014 14:54:57 +0000 (14:54 +0000)]
removing target dir from svn control

7 years agoadded settings dir
Cherian Mathew [Mon, 6 Oct 2014 14:51:08 +0000 (14:51 +0000)]
added settings dir