taxeditor.git
7 years agomerge-update from trunk
Patric Plitzner [Tue, 5 Aug 2014 12:12:40 +0000 (12:12 +0000)]
merge-update from trunk

7 years ago - fixed bug that showed double or no '&' (#4302)
Patric Plitzner [Tue, 5 Aug 2014 11:46:59 +0000 (11:46 +0000)]
 - fixed bug that showed double or no '&' (#4302)

7 years agoTest version of an AlignmentArea added to AlignmentEditor.
b.stoever [Tue, 5 Aug 2014 09:25:31 +0000 (09:25 +0000)]
Test version of an AlignmentArea added to AlignmentEditor.
Dependencies of LibrAlign added in provisional form.
  During initial development stage you need to check out the following two additional project into your workspace:
  - bioinfweb.commons as "_Lib" from https://secure.bioinfweb.info/Code/svn/commons.java/trunk/main/
  - LibrAlign as "LibrAlign" from https://secure.nefertem.bioinfweb.info/private/svn/LibrAlign/trunk/main/
  (These dependencies will be replaced by JARs after the initial development phase of this branch.)

7 years agomerge-update from trunk
Patric Plitzner [Mon, 4 Aug 2014 12:51:01 +0000 (12:51 +0000)]
merge-update from trunk

7 years agoLockMode issues in transient services
Andreas Müller [Mon, 4 Aug 2014 11:46:15 +0000 (11:46 +0000)]
LockMode issues in transient services

7 years agomerge-update from trunk
Patric Plitzner [Mon, 4 Aug 2014 10:05:09 +0000 (10:05 +0000)]
merge-update from trunk

7 years ago - added empty AlignmentEditor
Patric Plitzner [Mon, 4 Aug 2014 09:42:01 +0000 (09:42 +0000)]
 - added empty AlignmentEditor

7 years agocreating taxeditor branch for LibrAlign integration
Patric Plitzner [Thu, 31 Jul 2014 18:11:02 +0000 (18:11 +0000)]
creating taxeditor branch for LibrAlign integration

7 years agoadaption for error handling of delete methods
Katja Luther [Wed, 30 Jul 2014 12:09:55 +0000 (12:09 +0000)]
adaption for error handling of delete methods

7 years agoremoved style parameter for combobox. Quick fix for ticket #4289. Needs to be reviewed.
Alexander Oppermann [Wed, 16 Jul 2014 09:29:46 +0000 (09:29 +0000)]
removed style parameter for combobox. Quick fix for ticket #4289. Needs to be reviewed.

7 years agocreating new instance of key statement with existing text in the case of copy/paste
Cherian Mathew [Fri, 11 Jul 2014 13:48:29 +0000 (13:48 +0000)]
creating new instance of key statement with existing text in the case of copy/paste

7 years agorename getByIdInVocabulary
Andreas Müller [Wed, 9 Jul 2014 15:44:16 +0000 (15:44 +0000)]
rename getByIdInVocabulary

7 years agoUpdated version in config files to 3.3.7-SNAPSHOT
edit-jenkins [Tue, 8 Jul 2014 13:34:52 +0000 (13:34 +0000)]
Updated version in config files to 3.3.7-SNAPSHOT

7 years agoUpdated version in config files to 3.3.6
edit-jenkins [Tue, 8 Jul 2014 13:20:37 +0000 (13:20 +0000)]
Updated version in config files to 3.3.6

7 years agoadapting TransientTermService to code cleaning in TermService
Andreas Kohlbecker [Tue, 8 Jul 2014 07:52:36 +0000 (07:52 +0000)]
adapting TransientTermService to code cleaning in TermService

7 years agoignoring bin folder in eu.etaxonomy.taxeditor.cdmlib
Andreas Kohlbecker [Tue, 8 Jul 2014 07:52:33 +0000 (07:52 +0000)]
ignoring bin folder in eu.etaxonomy.taxeditor.cdmlib

7 years ago - generalized adding MediaSpecimen in DerivateView
Patric Plitzner [Thu, 3 Jul 2014 13:36:19 +0000 (13:36 +0000)]
 - generalized adding MediaSpecimen in DerivateView

7 years ago - added support for term retrieval by TermVocabulary
Patric Plitzner [Thu, 3 Jul 2014 12:32:59 +0000 (12:32 +0000)]
 - added support for term retrieval by TermVocabulary
 - adapted MediaSpecimen DetailsView

7 years ago - reload last entered access point in wizard space
Patric Plitzner [Thu, 3 Jul 2014 08:36:58 +0000 (08:36 +0000)]
 - reload last entered access point in wizard space
 - added validation to access point text field

7 years ago - reload last entered access point in wizard space
Patric Plitzner [Thu, 3 Jul 2014 08:36:10 +0000 (08:36 +0000)]
 - reload last entered access point in wizard space
 - added validation to access point text field

8 years agoCdmServiceCacher : Added class to load / cache CDM entities using services
Cherian Mathew [Fri, 27 Jun 2014 09:57:30 +0000 (09:57 +0000)]
CdmServiceCacher : Added class to load / cache CDM entities using services
remotingApplicationContext : updated cacher bean config
httpInvokerServiceClients : removed unnecessary loading of remote config
CdmServiceCacherTest : added cacher test

8 years agoimplementing findWithoutFlush method in transient services
Cherian Mathew [Thu, 26 Jun 2014 15:22:06 +0000 (15:22 +0000)]
implementing findWithoutFlush method in transient services

8 years agofix delete polytomous key node
Katja Luther [Thu, 26 Jun 2014 08:51:46 +0000 (08:51 +0000)]
fix delete polytomous key node

8 years agofix a warning "Prevented recursive attempt to activate part..."
Katja Luther [Thu, 26 Jun 2014 08:37:25 +0000 (08:37 +0000)]
fix a warning "Prevented recursive attempt to activate part..."

8 years agoupdating ehcache to 2.6.9
Cherian Mathew [Wed, 25 Jun 2014 17:24:00 +0000 (17:24 +0000)]
updating ehcache to 2.6.9

8 years agoadded PostFix to memento to distinguish between remote and data source
Cherian Mathew [Wed, 25 Jun 2014 15:34:13 +0000 (15:34 +0000)]
added PostFix to memento to distinguish between remote and data source

8 years agoreplaced static term initialisation methods with newly added cdmCacher driven methods
Cherian Mathew [Wed, 25 Jun 2014 15:33:15 +0000 (15:33 +0000)]
replaced static term initialisation methods with newly added cdmCacher driven methods

8 years agoremotingApplicationContext : added CdmCacher as bean to be initialised
Cherian Mathew [Wed, 25 Jun 2014 15:15:10 +0000 (15:15 +0000)]
remotingApplicationContext : added CdmCacher as bean to be initialised
META-INF/MANIFEST.MF, .classpath, lib/ehcache-core-2.4.3.jar, lib/ehcache-core-2.6.9.jar: replaced ehcache-core-2.4.3 with ehcache-core-2.6.9 for the CdmCacher.
It seems that even though hibernate-ehcache-4.1.10.Final is embedded with ehcache-core-2.4.3, it is compatible with ehcache-core-2.6.9 according to http://architects.dzone.com/articles/hibernate-4-and-ehcache-higher.

8 years agoimproved handling for missing representation for certain language #4249
Andreas Müller [Tue, 24 Jun 2014 14:52:32 +0000 (14:52 +0000)]
improved handling for missing representation for certain language #4249

8 years ago#4244 fixed
Katja Luther [Tue, 24 Jun 2014 12:26:43 +0000 (12:26 +0000)]
#4244 fixed

8 years agoopen Taxonpage with single click in taxonnavigator
Katja Luther [Tue, 24 Jun 2014 09:44:50 +0000 (09:44 +0000)]
open Taxonpage with single click in taxonnavigator

8 years ago(no commit message)
Katja Luther [Tue, 24 Jun 2014 08:55:24 +0000 (08:55 +0000)]

8 years agofix #4249
Katja Luther [Tue, 24 Jun 2014 08:52:59 +0000 (08:52 +0000)]
fix #4249

8 years agoskip the dialog for setting the default nomenclatural code. The default is the botani...
Katja Luther [Tue, 24 Jun 2014 07:49:27 +0000 (07:49 +0000)]
skip the dialog for setting the default nomenclatural code. The default is the botanical code.

8 years agominor
Katja Luther [Thu, 19 Jun 2014 13:25:51 +0000 (13:25 +0000)]
minor

8 years ago- not running imports and exports deleted from menu
Katja Luther [Thu, 19 Jun 2014 13:07:54 +0000 (13:07 +0000)]
- not running imports and exports deleted from menu
- preferences for concept relations fixed
- open taxon editor with one click in taxon navigator

8 years ago - removed debug output
Patric Plitzner [Thu, 19 Jun 2014 12:39:11 +0000 (12:39 +0000)]
 - removed debug output
 - made DerivateLabelProvider use occurrence service

8 years ago - fixed class cast exception
Patric Plitzner [Thu, 19 Jun 2014 12:38:25 +0000 (12:38 +0000)]
 - fixed class cast exception

8 years ago - removed branch code from trunk
Patric Plitzner [Thu, 19 Jun 2014 07:45:46 +0000 (07:45 +0000)]
 - removed branch code from trunk

8 years ago - saved last parameters entered for specimen search
Patric Plitzner [Thu, 19 Jun 2014 07:08:47 +0000 (07:08 +0000)]
 - saved last parameters entered for specimen search

8 years ago - fixed potential NPE
Patric Plitzner [Thu, 19 Jun 2014 07:06:57 +0000 (07:06 +0000)]
 - fixed potential NPE

8 years ago - commented workbenchShutdown() content
Patric Plitzner [Wed, 18 Jun 2014 13:37:25 +0000 (13:37 +0000)]
 - commented workbenchShutdown() content

8 years ago - removed TextReadOnly (#4254)
Patric Plitzner [Wed, 18 Jun 2014 13:34:58 +0000 (13:34 +0000)]
 - removed TextReadOnly (#4254)
  - just used a Text field with "editable" flag set to false
 - added dummy title cache text as section header
  - just showing the first 10 characters

8 years agoeditor changes for red list project (datasource view and create new datasource from...
Katja Luther [Wed, 18 Jun 2014 12:16:35 +0000 (12:16 +0000)]
editor changes for red list project (datasource view and create new datasource from file menu)

8 years ago - added section for "Original Label Data" to DetailsView (#4254)
Patric Plitzner [Wed, 18 Jun 2014 07:14:53 +0000 (07:14 +0000)]
 - added section for "Original Label Data" to DetailsView (#4254)

8 years ago - added java doc
Patric Plitzner [Wed, 18 Jun 2014 07:09:48 +0000 (07:09 +0000)]
 - added java doc

8 years ago - fixed potential session exceptions during closing/saving
Patric Plitzner [Wed, 18 Jun 2014 07:08:36 +0000 (07:08 +0000)]
 - fixed potential session exceptions during closing/saving

8 years ago - changed error dialog text
Patric Plitzner [Wed, 18 Jun 2014 07:07:42 +0000 (07:07 +0000)]
 - changed error dialog text

8 years ago - added "Detail Image" icon to ImageResources
Patric Plitzner [Wed, 18 Jun 2014 07:06:06 +0000 (07:06 +0000)]
 - added "Detail Image" icon to ImageResources

8 years agofix idInVocabulary #4243
Andreas Müller [Tue, 17 Jun 2014 14:20:36 +0000 (14:20 +0000)]
fix idInVocabulary #4243

8 years ago - added icon for "Detail Image"
Patric Plitzner [Tue, 17 Jun 2014 14:09:22 +0000 (14:09 +0000)]
 - added icon for "Detail Image"

8 years ago - added feedback if drag&drop in DerivateVie does not work
Patric Plitzner [Tue, 17 Jun 2014 14:09:04 +0000 (14:09 +0000)]
 - added feedback if drag&drop in DerivateVie does not work

8 years ago - added specimen scan icon
Patric Plitzner [Tue, 17 Jun 2014 13:22:10 +0000 (13:22 +0000)]
 - added specimen scan icon
 - save kindOfUnit

8 years ago - added "Published in" parameter to MediaSpecimen DetailsView (#4239)
Patric Plitzner [Tue, 17 Jun 2014 12:22:28 +0000 (12:22 +0000)]
 - added "Published in" parameter to MediaSpecimen DetailsView (#4239)

8 years ago - added missing parameters to MediaSpecimen DetailsView (#4239)
Patric Plitzner [Tue, 17 Jun 2014 07:27:02 +0000 (07:27 +0000)]
 - added missing parameters to MediaSpecimen DetailsView (#4239)

8 years agoupdate New menu in TaxEditor
Andreas Müller [Mon, 16 Jun 2014 15:30:30 +0000 (15:30 +0000)]
update New menu in TaxEditor

8 years agoupdate New menu in TaxEditor
Andreas Müller [Mon, 16 Jun 2014 15:23:15 +0000 (15:23 +0000)]
update New menu in TaxEditor

8 years agoRemoved deleted command classes from plugin.xml
Patric Plitzner [Mon, 16 Jun 2014 09:44:16 +0000 (09:44 +0000)]
Removed deleted command classes from plugin.xml

8 years ago - refactored DataImportEditor context menu
Patric Plitzner [Mon, 16 Jun 2014 09:41:09 +0000 (09:41 +0000)]
 - refactored DataImportEditor context menu
   - removed extension point in plugin.xml
   - added dynamic context menu

8 years ago - fixed potential hibernate exception when trying to close the editor (check if...
Patric Plitzner [Mon, 16 Jun 2014 09:39:02 +0000 (09:39 +0000)]
 - fixed potential hibernate exception when trying to close the editor (check if conversation is bound before closing it)

8 years ago - removed unnecessary code
Patric Plitzner [Mon, 16 Jun 2014 09:29:24 +0000 (09:29 +0000)]
 - removed unnecessary code

8 years ago - added functionality to determination section to add determinations to FieldUnits...
Patric Plitzner [Mon, 16 Jun 2014 09:28:23 +0000 (09:28 +0000)]
 - added functionality to determination section to add determinations to FieldUnits also (#4252)

8 years ago - added functionality to filter assigned specimens in the DerivateSearchView (fixes...
Patric Plitzner [Mon, 16 Jun 2014 08:57:24 +0000 (08:57 +0000)]
 - added functionality to filter assigned specimens in the DerivateSearchView (fixes #4252)

8 years ago - add placeholder for Media label
Patric Plitzner [Mon, 16 Jun 2014 08:55:02 +0000 (08:55 +0000)]
 - add placeholder for Media label

8 years ago - list "Specimen Details" second in DetailsView (only for campanula, fixes #4235)
Patric Plitzner [Mon, 16 Jun 2014 08:53:12 +0000 (08:53 +0000)]
 - list "Specimen Details" second in DetailsView (only for campanula, fixes #4235)

8 years ago - added new dynamic context menu for DerivateSearchView
Patric Plitzner [Wed, 11 Jun 2014 15:16:30 +0000 (15:16 +0000)]
 - added new dynamic context menu for DerivateSearchView
 - cleaned up code

8 years ago - fixed comment
Patric Plitzner [Wed, 11 Jun 2014 07:46:20 +0000 (07:46 +0000)]
 - fixed comment

8 years ago - fixed TransientObjectException when adding and saving a scope for a TaxonDescripti...
Patric Plitzner [Wed, 11 Jun 2014 07:28:56 +0000 (07:28 +0000)]
 - fixed TransientObjectException when adding and saving a scope for a TaxonDescription (fixes #2607)
   - made use of AbstractUnboundEntityCollectionsection
   - a DefinedTerm will not be created but selected from a list of existing ones

8 years ago - added conversation/session support to DerivateLabelProvider
Patric Plitzner [Wed, 11 Jun 2014 07:23:48 +0000 (07:23 +0000)]
 - added conversation/session support to DerivateLabelProvider
  - GUI widgets using the provider need to provide a conversation/session to avoid LazyInitializationException

8 years ago(no commit message)
Katja Luther [Wed, 11 Jun 2014 07:23:10 +0000 (07:23 +0000)]

8 years ago - set CdmFormFactory.createTermComboElement() to deprecated
Patric Plitzner [Tue, 10 Jun 2014 11:56:25 +0000 (11:56 +0000)]
 - set CdmFormFactory.createTermComboElement() to deprecated
 - replaced (almost) all uses of the method with CdmFormFactory.createDefinedTermComboElement which works with TermType instead of classes

8 years ago(no commit message)
Katja Luther [Tue, 10 Jun 2014 11:47:04 +0000 (11:47 +0000)]

8 years ago - added dispose check because in some undefined circumstances the setBackground...
Patric Plitzner [Tue, 10 Jun 2014 11:20:12 +0000 (11:20 +0000)]
 - added dispose check because in some undefined circumstances the setBackground() method was invoked but the label was already disposed

8 years agofixed Ticket #4243
Katja Luther [Tue, 10 Jun 2014 11:06:59 +0000 (11:06 +0000)]
fixed Ticket #4243

8 years agoremove deprecated method
Andreas Müller [Fri, 6 Jun 2014 21:06:39 +0000 (21:06 +0000)]
remove deprecated method

8 years ago #4242 delete MA
Katja Luther [Wed, 4 Jun 2014 12:09:23 +0000 (12:09 +0000)]
 #4242 delete MA

8 years ago - implemented differentiation of the three image types (Artwork, Living Plant Photo...
Patric Plitzner [Wed, 4 Jun 2014 09:35:29 +0000 (09:35 +0000)]
 - implemented differentiation of the three image types (Artwork, Living Plant Photo, Specimen Scan) in the DerivateView and DetailsView

8 years ago - fixed copy&paste mistake (but the image file still needs to be made)
Patric Plitzner [Wed, 4 Jun 2014 09:30:11 +0000 (09:30 +0000)]
 - fixed copy&paste mistake (but the image file still needs to be made)

8 years ago - added missing @Override annotation
Patric Plitzner [Wed, 4 Jun 2014 09:29:24 +0000 (09:29 +0000)]
 - added missing @Override annotation

8 years ago - implemented derivate specific textual representation in DerivateView
Patric Plitzner [Tue, 3 Jun 2014 14:35:46 +0000 (14:35 +0000)]
 - implemented derivate specific textual representation in DerivateView

8 years agomisappliedName can be created directly from the accepted Taxon in TaxonNameEditor
Katja Luther [Tue, 3 Jun 2014 10:01:45 +0000 (10:01 +0000)]
misappliedName can be created directly from the accepted Taxon in TaxonNameEditor

8 years ago - added functionality to query a BioCASE provider for the original record which...
Patric Plitzner [Mon, 2 Jun 2014 13:52:13 +0000 (13:52 +0000)]
 - added functionality to query a BioCASE provider for the original record which is then opened in another editor

8 years ago - moved query class variable to super class DataImportEditorInput
Patric Plitzner [Mon, 2 Jun 2014 09:43:18 +0000 (09:43 +0000)]
 - moved query class variable to super class DataImportEditorInput

8 years agoadded sourcepath to all cdm libs
Cherian Mathew [Fri, 30 May 2014 09:51:21 +0000 (09:51 +0000)]
added sourcepath to all cdm libs

8 years agoUpdated version in config files to 3.3.6-SNAPSHOT
edit-jenkins [Fri, 30 May 2014 09:12:53 +0000 (09:12 +0000)]
Updated version in config files to 3.3.6-SNAPSHOT

8 years agoUpdated version in config files to 3.3.5
edit-jenkins [Fri, 30 May 2014 09:02:28 +0000 (09:02 +0000)]
Updated version in config files to 3.3.5

8 years agodelete in taxon bulk editor
Katja Luther [Thu, 29 May 2014 20:47:52 +0000 (20:47 +0000)]
delete in taxon bulk editor

8 years ago - adapted to cdmlib-ext changes
Patric Plitzner [Wed, 28 May 2014 14:10:39 +0000 (14:10 +0000)]
 - adapted to cdmlib-ext changes

8 years ago - changed date format to mm-yyyy
Patric Plitzner [Wed, 28 May 2014 14:10:19 +0000 (14:10 +0000)]
 - changed date format to mm-yyyy

8 years ago - checked in previously deleted eclipse jar files (see #4227)
Patric Plitzner [Wed, 28 May 2014 13:45:48 +0000 (13:45 +0000)]
 - checked in previously deleted eclipse jar files (see #4227)

8 years agomove the taxon bulk editor entry to names group in menu
Katja Luther [Wed, 28 May 2014 12:31:41 +0000 (12:31 +0000)]
move the taxon bulk editor entry to names group in menu

8 years agocatch NPE #4228
Katja Luther [Wed, 28 May 2014 12:14:18 +0000 (12:14 +0000)]
catch NPE #4228

8 years ago - removed test code
Patric Plitzner [Wed, 28 May 2014 10:57:23 +0000 (10:57 +0000)]
 - removed test code

8 years ago - removed eclipse jars from svn:ignore because of too much trouble (see #4227)
Patric Plitzner [Wed, 28 May 2014 09:44:30 +0000 (09:44 +0000)]
 - removed eclipse jars from svn:ignore because of too much trouble (see #4227)

8 years ago - adapted to interface changes in cdmlib
Patric Plitzner [Wed, 28 May 2014 09:40:24 +0000 (09:40 +0000)]
 - adapted to interface changes in cdmlib

8 years ago - checked in previously deleted .classpath file (see #4227)
Patric Plitzner [Wed, 28 May 2014 09:29:41 +0000 (09:29 +0000)]
 - checked in previously deleted .classpath file (see #4227)

8 years ago - removed .classpath from svn:ignore because of too much trouble (see #4227)
Patric Plitzner [Wed, 28 May 2014 09:28:22 +0000 (09:28 +0000)]
 - removed .classpath from svn:ignore because of too much trouble (see #4227)

8 years ago(no commit message)
Katja Luther [Wed, 28 May 2014 09:27:35 +0000 (09:27 +0000)]

8 years ago - added new DataImportEditor for GbifResponses
Patric Plitzner [Wed, 28 May 2014 08:57:39 +0000 (08:57 +0000)]
 - added new DataImportEditor for GbifResponses
  - allows querying for original record via context menu

8 years ago - fixed refresh problem for SpecimenImportEditor
Patric Plitzner [Tue, 27 May 2014 08:24:41 +0000 (08:24 +0000)]
 - fixed refresh problem for SpecimenImportEditor