From: jenkins Date: Wed, 25 Jan 2017 09:23:34 +0000 (+0100) Subject: Merge branch 'hotfix/4.5.1' X-Git-Tag: 4.5.1^0 X-Git-Url: https://dev.e-taxonomy.eu/gitweb/taxeditor.git/commitdiff_plain/8bbae35693ea75f2783d38abe2e694398390937f?hp=d06f9823c23c60f90df33c1f2a313a4062aa4a76 Merge branch 'hotfix/4.5.1' --- diff --git a/eu.etaxonomy.taxeditor.application/META-INF/MANIFEST.MF b/eu.etaxonomy.taxeditor.application/META-INF/MANIFEST.MF index af5fc5c49..d06acdf25 100644 --- a/eu.etaxonomy.taxeditor.application/META-INF/MANIFEST.MF +++ b/eu.etaxonomy.taxeditor.application/META-INF/MANIFEST.MF @@ -2,7 +2,7 @@ Manifest-Version: 1.0 Bundle-ManifestVersion: 2 Bundle-Name: Application Bundle-SymbolicName: eu.etaxonomy.taxeditor.application;singleton:=true -Bundle-Version: 4.5.0 +Bundle-Version: 4.5.1 Bundle-Activator: eu.etaxonomy.taxeditor.TaxonomicEditorPlugin Bundle-Vendor: EDIT Bundle-Localization: OSGI-INF/l10n/plugin diff --git a/eu.etaxonomy.taxeditor.application/pom.xml b/eu.etaxonomy.taxeditor.application/pom.xml index 3add2cf9c..cc9c8a036 100644 --- a/eu.etaxonomy.taxeditor.application/pom.xml +++ b/eu.etaxonomy.taxeditor.application/pom.xml @@ -3,7 +3,7 @@ eu.etaxonomy taxeditor-parent - 4.5.0 + 4.5.1 4.0.0 diff --git a/eu.etaxonomy.taxeditor.bulkeditor/META-INF/MANIFEST.MF b/eu.etaxonomy.taxeditor.bulkeditor/META-INF/MANIFEST.MF index 03fe7708d..0c072823f 100644 --- a/eu.etaxonomy.taxeditor.bulkeditor/META-INF/MANIFEST.MF +++ b/eu.etaxonomy.taxeditor.bulkeditor/META-INF/MANIFEST.MF @@ -2,7 +2,7 @@ Manifest-Version: 1.0 Bundle-ManifestVersion: 2 Bundle-Name: Bulkeditor Bundle Bundle-SymbolicName: eu.etaxonomy.taxeditor.bulkeditor;singleton:=true -Bundle-Version: 4.5.0 +Bundle-Version: 4.5.1 Bundle-Activator: eu.etaxonomy.taxeditor.bulkeditor.internal.TaxeditorBulkeditorPlugin Bundle-Vendor: EDIT Export-Package: eu.etaxonomy.taxeditor.annotatedlineeditor, diff --git a/eu.etaxonomy.taxeditor.bulkeditor/pom.xml b/eu.etaxonomy.taxeditor.bulkeditor/pom.xml index f1677fd87..0e68d4050 100644 --- a/eu.etaxonomy.taxeditor.bulkeditor/pom.xml +++ b/eu.etaxonomy.taxeditor.bulkeditor/pom.xml @@ -3,7 +3,7 @@ eu.etaxonomy taxeditor-parent - 4.5.0 + 4.5.1 4.0.0 diff --git a/eu.etaxonomy.taxeditor.bulkeditor/src/main/java/eu/etaxonomy/taxeditor/annotatedlineeditor/LineAnnotationModel.java b/eu.etaxonomy.taxeditor.bulkeditor/src/main/java/eu/etaxonomy/taxeditor/annotatedlineeditor/LineAnnotationModel.java index 298e1828a..33fb923d8 100644 --- a/eu.etaxonomy.taxeditor.bulkeditor/src/main/java/eu/etaxonomy/taxeditor/annotatedlineeditor/LineAnnotationModel.java +++ b/eu.etaxonomy.taxeditor.bulkeditor/src/main/java/eu/etaxonomy/taxeditor/annotatedlineeditor/LineAnnotationModel.java @@ -1,8 +1,8 @@ /** * Copyright (C) 2007 EDIT -* European Distributed Institute of Taxonomy +* European Distributed Institute of Taxonomy * http://www.e-taxonomy.eu -* +* * The contents of this file are subject to the Mozilla Public License Version 1.1 * See LICENSE.TXT at the top of this package for the full license terms. */ @@ -40,13 +40,13 @@ import eu.etaxonomy.taxeditor.model.MessagingUtils; * @version 1.0 */ public class LineAnnotationModel extends AnnotationModel { - + private Comparator comparator; private IEntityCreator entityCreator; private Set deletedAnnotations = new HashSet(); private ILineDisplayStrategy lineDisplayStrategy; - + /** *

Constructor for LineAnnotationModel.

* @@ -56,7 +56,7 @@ public class LineAnnotationModel extends AnnotationModel { super(); this.lineDisplayStrategy = lineDisplayStrategy; } - + /** * Changes the annotation's type and fires model changed * notification. Resulting redraw will cause any change @@ -69,21 +69,20 @@ public class LineAnnotationModel extends AnnotationModel { annotation.setType(type); fireModelChanged(new AnnotationModelEvent(this)); } - + /* (non-Javadoc) * @see org.eclipse.jface.text.source.AnnotationModel#removeAnnotation(org.eclipse.jface.text.source.Annotation, boolean) */ /** {@inheritDoc} */ - protected void removeAnnotation(Annotation annotation, + @Override + protected void removeAnnotation(Annotation annotation, boolean fireModelChanged) { - // Set data model element for deletion - annotation.markDeleted(true); if (annotation instanceof LineAnnotation) { deletedAnnotations.add((LineAnnotation) annotation); } super.removeAnnotation(annotation, fireModelChanged); } - + /** *

removeTypeFromAllAnnotations

* @@ -98,7 +97,7 @@ public class LineAnnotationModel extends AnnotationModel { } } } - + /** *

getAllAnnotationsOfType

* @@ -113,10 +112,10 @@ public class LineAnnotationModel extends AnnotationModel { if (annotation.getType().equals(type)) { candidates.add(annotation); } - } - return candidates; - } - + } + return candidates; + } + /** *

getFirstAnnotationOfType

* @@ -130,10 +129,10 @@ public class LineAnnotationModel extends AnnotationModel { if (annotation.getType().equals(type)) { return annotation; } - } + } return null; } - + /** * Gets first LineAnnotation in line * @@ -146,7 +145,7 @@ public class LineAnnotationModel extends AnnotationModel { try { int offset = document.getLineOffset(line); int length = document.getLineLength(line); - + Iterator iterator = getAnnotationIterator(offset, length, true, true); while (iterator.hasNext()) { Object next = iterator.next(); @@ -160,7 +159,7 @@ public class LineAnnotationModel extends AnnotationModel { } return null; } - + /** *

getOrderedAnnotations

* @@ -175,7 +174,7 @@ public class LineAnnotationModel extends AnnotationModel { Collections.sort(list, getAnnotationComparator()); return list; } - + /** *

printAnnotations

*/ @@ -185,7 +184,7 @@ public class LineAnnotationModel extends AnnotationModel { logger.debug("Active annotations"); logger.debug("------------------------"); List list = getOrderedAnnotations(); - + for (Annotation annotation : list) { logger.debug( (annotation.isMarkedDeleted() ? "DELETED " : "") + @@ -193,7 +192,7 @@ public class LineAnnotationModel extends AnnotationModel { (((LineAnnotation) annotation).isDirty() ? "DIRTY " : "") + (((LineAnnotation) annotation).isMarkedAsNew() ? "NEW " : "") + annotation.getText() + ": o " + - getPosition(annotation).getOffset() + ", l " + + getPosition(annotation).getOffset() + ", l " + getPosition(annotation).getLength()); } logger.debug("------------------------"); @@ -202,13 +201,13 @@ public class LineAnnotationModel extends AnnotationModel { for (LineAnnotation annotation : deletedAnnotations) { logger.debug( (annotation.isMarkedDeleted() ? "DELETED " : "") + - (((LineAnnotation) annotation).isMarkedAsMerged() ? "MERGED " : "") + - (((LineAnnotation) annotation).isDirty() ? "DIRTY " : "") + - (((LineAnnotation) annotation).isMarkedAsNew() ? "NEW " : "") + - annotation.getText() + ": o "); + (annotation.isMarkedAsMerged() ? "MERGED " : "") + + (annotation.isDirty() ? "DIRTY " : "") + + (annotation.isMarkedAsNew() ? "NEW " : "") + + annotation.getText() + ": o "); } } - + /** *

getUndeletedAnnotations

* @@ -217,20 +216,20 @@ public class LineAnnotationModel extends AnnotationModel { * @return a {@link java.util.List} object. */ public List getUndeletedAnnotations(int offset, int length) { - + List list = new ArrayList(); - + Iterator iterator = getAnnotationIterator(offset, length, true, true); while (iterator.hasNext()) { Object next = iterator.next(); if (next instanceof LineAnnotation && !((Annotation) next).isMarkedDeleted()) { - list.add((LineAnnotation) next); + list.add((LineAnnotation) next); } } Collections.sort(list, getAnnotationComparator()); return list; } - + /** *

Getter for the field deletedAnnotations.

* @@ -239,27 +238,28 @@ public class LineAnnotationModel extends AnnotationModel { public Set getDeletedAnnotations() { return deletedAnnotations; } - + /** *

clearDeletedAnnotations

*/ public void clearDeletedAnnotations() { deletedAnnotations.clear(); } - + private Comparator getAnnotationComparator() { if (comparator == null) { this.comparator = new AnnotationComparator(); } return comparator; } - + class AnnotationComparator implements Comparator { /* (non-Javadoc) * @see java.util.Comparator#compare(java.lang.Object, java.lang.Object) */ - public int compare(Annotation annotation1, Annotation annotation2) { + @Override + public int compare(Annotation annotation1, Annotation annotation2) { if (annotation1.isMarkedDeleted() && !annotation2.isMarkedDeleted()) { return 1; } @@ -277,9 +277,9 @@ public class LineAnnotationModel extends AnnotationModel { } else { return 0; } - } + } } - + /** * The annotation model is assigned responsibility for creating new containers * from blocks of text. @@ -289,7 +289,7 @@ public class LineAnnotationModel extends AnnotationModel { public void setEntityCreator(IEntityCreator entityCreator) { this.entityCreator = entityCreator; } - + /** * Creates an annotation without adding it to the model. * @@ -318,7 +318,7 @@ public class LineAnnotationModel extends AnnotationModel { annotation.markAsNew(true); return annotation; } - + /* (non-Javadoc) * @see org.eclipse.jface.text.source.AnnotationModel#addAnnotation(org.eclipse.jface.text.source.Annotation, org.eclipse.jface.text.Position) */ @@ -327,7 +327,7 @@ public class LineAnnotationModel extends AnnotationModel { public void addAnnotation(Annotation annotation, Position position) { super.addAnnotation(annotation, position); } - + /** *

getAnnotation

* diff --git a/eu.etaxonomy.taxeditor.cdmlib/.classpath b/eu.etaxonomy.taxeditor.cdmlib/.classpath index 890bf1164..8ad395aea 100644 --- a/eu.etaxonomy.taxeditor.cdmlib/.classpath +++ b/eu.etaxonomy.taxeditor.cdmlib/.classpath @@ -29,15 +29,15 @@ - - - - - - - - - + + + + + + + + + diff --git a/eu.etaxonomy.taxeditor.cdmlib/META-INF/MANIFEST.MF b/eu.etaxonomy.taxeditor.cdmlib/META-INF/MANIFEST.MF index fb1cc57ef..2daba2448 100644 --- a/eu.etaxonomy.taxeditor.cdmlib/META-INF/MANIFEST.MF +++ b/eu.etaxonomy.taxeditor.cdmlib/META-INF/MANIFEST.MF @@ -2,7 +2,7 @@ Manifest-Version: 1.0 Bundle-ManifestVersion: 2 Bundle-Name: CDM Library Dependencies Plugin Bundle-SymbolicName: eu.etaxonomy.taxeditor.cdmlib;singleton:=true -Bundle-Version: 4.5.0 +Bundle-Version: 4.5.1 Eclipse-BundleShape: dir Export-Package: com.google.api, com.google.api.detect, @@ -539,15 +539,15 @@ Bundle-ClassPath: ., lib/batik-util-1.7.jar, lib/batik-xml-1.7.jar, lib/c3p0-0.9.5.2.jar, - lib/cdmlib-commons-4.5.0.jar, - lib/cdmlib-ext-4.5.0.jar, - lib/cdmlib-io-4.5.0.jar, - lib/cdmlib-model-4.5.0.jar, - lib/cdmlib-persistence-4.5.0.jar, - lib/cdmlib-print-4.5.0.jar, - lib/cdmlib-remote-4.5.0.jar, - lib/cdmlib-services-4.5.0.jar, - lib/cdmlib-test-4.5.0.jar, + lib/cdmlib-commons-4.5.1.jar, + lib/cdmlib-ext-4.5.1.jar, + lib/cdmlib-io-4.5.1.jar, + lib/cdmlib-model-4.5.1.jar, + lib/cdmlib-persistence-4.5.1.jar, + lib/cdmlib-print-4.5.1.jar, + lib/cdmlib-remote-4.5.1.jar, + lib/cdmlib-services-4.5.1.jar, + lib/cdmlib-test-4.5.1.jar, lib/cglib-3.2.0.jar, lib/cglib-nodep-3.2.0.jar, lib/classmate-1.3.1.jar, diff --git a/eu.etaxonomy.taxeditor.cdmlib/build.properties b/eu.etaxonomy.taxeditor.cdmlib/build.properties index b43dea134..5467e372f 100644 --- a/eu.etaxonomy.taxeditor.cdmlib/build.properties +++ b/eu.etaxonomy.taxeditor.cdmlib/build.properties @@ -25,15 +25,15 @@ bin.includes = META-INF/,\ lib/batik-util-1.7.jar,\ lib/batik-xml-1.7.jar,\ lib/c3p0-0.9.5.2.jar,\ - lib/cdmlib-commons-4.5.0.jar,\ - lib/cdmlib-ext-4.5.0.jar,\ - lib/cdmlib-io-4.5.0.jar,\ - lib/cdmlib-model-4.5.0.jar,\ - lib/cdmlib-persistence-4.5.0.jar,\ - lib/cdmlib-print-4.5.0.jar,\ - lib/cdmlib-remote-4.5.0.jar,\ - lib/cdmlib-services-4.5.0.jar,\ - lib/cdmlib-test-4.5.0.jar,\ + lib/cdmlib-commons-4.5.1.jar,\ + lib/cdmlib-ext-4.5.1.jar,\ + lib/cdmlib-io-4.5.1.jar,\ + lib/cdmlib-model-4.5.1.jar,\ + lib/cdmlib-persistence-4.5.1.jar,\ + lib/cdmlib-print-4.5.1.jar,\ + lib/cdmlib-remote-4.5.1.jar,\ + lib/cdmlib-services-4.5.1.jar,\ + lib/cdmlib-test-4.5.1.jar,\ lib/cglib-3.2.0.jar,\ lib/cglib-nodep-3.2.0.jar,\ lib/classmate-1.3.1.jar,\ diff --git a/eu.etaxonomy.taxeditor.cdmlib/pom.xml b/eu.etaxonomy.taxeditor.cdmlib/pom.xml index 347ce27f0..01f3d536c 100644 --- a/eu.etaxonomy.taxeditor.cdmlib/pom.xml +++ b/eu.etaxonomy.taxeditor.cdmlib/pom.xml @@ -4,7 +4,7 @@ eu.etaxonomy taxeditor-parent - 4.5.0 + 4.5.1 4.0.0 eu.etaxonomy.taxeditor.cdmlib @@ -489,4 +489,4 @@ - + diff --git a/eu.etaxonomy.taxeditor.editor/META-INF/MANIFEST.MF b/eu.etaxonomy.taxeditor.editor/META-INF/MANIFEST.MF index 2380fa87e..fe6879c11 100644 --- a/eu.etaxonomy.taxeditor.editor/META-INF/MANIFEST.MF +++ b/eu.etaxonomy.taxeditor.editor/META-INF/MANIFEST.MF @@ -2,7 +2,7 @@ Manifest-Version: 1.0 Bundle-ManifestVersion: 2 Bundle-Name: Editor Bundle Bundle-SymbolicName: eu.etaxonomy.taxeditor.editor;singleton:=true -Bundle-Version: 4.5.0 +Bundle-Version: 4.5.1 Bundle-Activator: eu.etaxonomy.taxeditor.editor.internal.TaxeditorEditorPlugin Bundle-Vendor: %Bundle-Vendor.0 Bundle-Localization: OSGI-INF/l10n/plugin diff --git a/eu.etaxonomy.taxeditor.editor/pom.xml b/eu.etaxonomy.taxeditor.editor/pom.xml index 620802717..9665708d4 100644 --- a/eu.etaxonomy.taxeditor.editor/pom.xml +++ b/eu.etaxonomy.taxeditor.editor/pom.xml @@ -4,7 +4,7 @@ eu.etaxonomy taxeditor-parent - 4.5.0 + 4.5.1 4.0.0 diff --git a/eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/descriptive/handler/DeleteHandler.java b/eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/descriptive/handler/DeleteHandler.java index 087cbd01b..49ce24e91 100644 --- a/eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/descriptive/handler/DeleteHandler.java +++ b/eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/descriptive/handler/DeleteHandler.java @@ -113,7 +113,7 @@ public class DeleteHandler extends AbstractHandler { - if (config.isOnlyRemoveFromGallery()){ + if (config.isOnlyRemoveFromGallery() || ((Media)object).getId() == 0){ operations.add(new RemoveImageFromDescriptionElementOperation(label, undoContext, (Media) object, imageGallery, postOperationEnabled)); }else{ operations.add(new DeleteMediaOperation(label, undoContext, imageGallery, (Media) object, config, postOperationEnabled)); diff --git a/eu.etaxonomy.taxeditor.feature.jre.linux64/feature.xml b/eu.etaxonomy.taxeditor.feature.jre.linux64/feature.xml index ee9de66e6..b48681dec 100644 --- a/eu.etaxonomy.taxeditor.feature.jre.linux64/feature.xml +++ b/eu.etaxonomy.taxeditor.feature.jre.linux64/feature.xml @@ -2,7 +2,7 @@ eu.etaxonomy taxeditor-parent - 4.5.0 + 4.5.1 4.0.0 eu.etaxonomy.taxeditor.feature.jre.linux64 diff --git a/eu.etaxonomy.taxeditor.feature.platform/feature.xml b/eu.etaxonomy.taxeditor.feature.platform/feature.xml index e0d3a3e87..1b9421d4e 100644 --- a/eu.etaxonomy.taxeditor.feature.platform/feature.xml +++ b/eu.etaxonomy.taxeditor.feature.platform/feature.xml @@ -2,7 +2,7 @@ diff --git a/eu.etaxonomy.taxeditor.feature.platform/pom.xml b/eu.etaxonomy.taxeditor.feature.platform/pom.xml index f400afae2..3fffe0c28 100644 --- a/eu.etaxonomy.taxeditor.feature.platform/pom.xml +++ b/eu.etaxonomy.taxeditor.feature.platform/pom.xml @@ -3,7 +3,7 @@ eu.etaxonomy taxeditor-parent - 4.5.0 + 4.5.1 4.0.0 eu.etaxonomy.taxeditor.feature.platform diff --git a/eu.etaxonomy.taxeditor.feature/feature.xml b/eu.etaxonomy.taxeditor.feature/feature.xml index f8d789082..df074a58d 100644 --- a/eu.etaxonomy.taxeditor.feature/feature.xml +++ b/eu.etaxonomy.taxeditor.feature/feature.xml @@ -2,7 +2,7 @@ eu.etaxonomy taxeditor-parent - 4.5.0 + 4.5.1 4.0.0 eu.etaxonomy.taxeditor.feature diff --git a/eu.etaxonomy.taxeditor.help/META-INF/MANIFEST.MF b/eu.etaxonomy.taxeditor.help/META-INF/MANIFEST.MF index 66ebb6599..a6c3addba 100644 --- a/eu.etaxonomy.taxeditor.help/META-INF/MANIFEST.MF +++ b/eu.etaxonomy.taxeditor.help/META-INF/MANIFEST.MF @@ -2,7 +2,7 @@ Manifest-Version: 1.0 Bundle-ManifestVersion: 2 Bundle-Name: Help Bundle-SymbolicName: eu.etaxonomy.taxeditor.help; singleton:=true -Bundle-Version: 4.5.0 +Bundle-Version: 4.5.1 Bundle-Activator: eu.etaxonomy.taxeditor.help.Activator Bundle-Vendor: EDIT Require-Bundle: org.eclipse.ui, diff --git a/eu.etaxonomy.taxeditor.help/pom.xml b/eu.etaxonomy.taxeditor.help/pom.xml index 911ca54d1..ead08fddf 100644 --- a/eu.etaxonomy.taxeditor.help/pom.xml +++ b/eu.etaxonomy.taxeditor.help/pom.xml @@ -3,7 +3,7 @@ eu.etaxonomy taxeditor-parent - 4.5.0 + 4.5.1 4.0.0 diff --git a/eu.etaxonomy.taxeditor.molecular.lib/.classpath b/eu.etaxonomy.taxeditor.molecular.lib/.classpath index 6329dd124..3e296041c 100644 --- a/eu.etaxonomy.taxeditor.molecular.lib/.classpath +++ b/eu.etaxonomy.taxeditor.molecular.lib/.classpath @@ -1,23 +1,23 @@ - - - - - - - - - - - - - + + + + + + + + + + + + + diff --git a/eu.etaxonomy.taxeditor.molecular.lib/META-INF/MANIFEST.MF b/eu.etaxonomy.taxeditor.molecular.lib/META-INF/MANIFEST.MF index c30457f65..57bab9195 100644 --- a/eu.etaxonomy.taxeditor.molecular.lib/META-INF/MANIFEST.MF +++ b/eu.etaxonomy.taxeditor.molecular.lib/META-INF/MANIFEST.MF @@ -2,7 +2,7 @@ Manifest-Version: 1.0 Bundle-ManifestVersion: 2 Bundle-Name: eu.etaxonomy.taxeditor.molecular.lib Bundle-SymbolicName: eu.etaxonomy.taxeditor.molecular.lib;singleton:=true -Bundle-Version: 4.5.0 +Bundle-Version: 4.5.1 Bundle-ClassPath: ., lib/owlapi-xmlutils-4.1.4.jar, lib/commons-collections4-4.1.jar, @@ -15,12 +15,12 @@ Bundle-ClassPath: ., lib/bioinfweb-commons-java-swing-2.2.0.jar, lib/bioinfweb-commons-java-swt-2.0.0.jar, lib/jphyloio-core-0.3.0.jar, - lib/libralign-biojava1-0.4.0-preview-2.jar, - lib/libralign-core-0.4.0-preview-2.jar, - lib/libralign-io-0.4.0-preview-2.jar, - lib/libralign-swt-0.4.0-preview-2.jar, - lib/tic-core-2.0.0-preview-2.jar, - lib/tic-swt-2.0.0-preview-2.jar + lib/tic-core-2.0.0.jar, + lib/tic-swt-2.0.0.jar, + lib/libralign-biojava1-0.4.0.jar, + lib/libralign-core-0.4.0.jar, + lib/libralign-io-0.4.0.jar, + lib/libralign-swt-0.4.0.jar Export-Package: info.bioinfweb.commons, info.bioinfweb.commons.appversion, info.bioinfweb.commons.beans, @@ -70,7 +70,6 @@ Export-Package: info.bioinfweb.commons, info.bioinfweb.jphyloio.objecttranslation, info.bioinfweb.jphyloio.objecttranslation.implementations, info.bioinfweb.jphyloio.utils, - info.bioinfweb.libralign, info.bioinfweb.libralign.actions, info.bioinfweb.libralign.alignmentarea, info.bioinfweb.libralign.alignmentarea.content, diff --git a/eu.etaxonomy.taxeditor.molecular.lib/build.properties b/eu.etaxonomy.taxeditor.molecular.lib/build.properties index a4bf0904f..c6255243b 100644 --- a/eu.etaxonomy.taxeditor.molecular.lib/build.properties +++ b/eu.etaxonomy.taxeditor.molecular.lib/build.properties @@ -9,11 +9,11 @@ bin.includes = META-INF/,\ lib/bioinfweb-commons-java-swing-2.2.0.jar,\ lib/bioinfweb-commons-java-swt-2.0.0.jar,\ lib/jphyloio-core-0.3.0.jar,\ - lib/libralign-biojava1-0.4.0-preview-2.jar,\ - lib/libralign-core-0.4.0-preview-2.jar,\ - lib/libralign-io-0.4.0-preview-2.jar,\ - lib/libralign-swt-0.4.0-preview-2.jar,\ - lib/tic-core-2.0.0-preview-2.jar,\ - lib/tic-swt-2.0.0-preview-2.jar + lib/tic-core-2.0.0.jar,\ + lib/tic-swt-2.0.0.jar,\ + lib/libralign-biojava1-0.4.0.jar,\ + lib/libralign-core-0.4.0.jar,\ + lib/libralign-io-0.4.0.jar,\ + lib/libralign-swt-0.4.0.jar lib/jphyloio-core-0-SNAPSHOT.jar,\ lib/owlapi-xmlutils-4.1.4.jar diff --git a/eu.etaxonomy.taxeditor.molecular.lib/configAlternatives/dependenciesFromJARs/build.properties b/eu.etaxonomy.taxeditor.molecular.lib/configAlternatives/dependenciesFromJARs/build.properties deleted file mode 100644 index 22e3c265b..000000000 --- a/eu.etaxonomy.taxeditor.molecular.lib/configAlternatives/dependenciesFromJARs/build.properties +++ /dev/null @@ -1,20 +0,0 @@ -bin.includes = META-INF/,\ - lib/tic-swt-2.0.0-preview-1.jar,\ - lib/commons-collections4-4.1.jar,\ - lib/core-1.9.2.jar,\ - lib/sequencing-1.9.2.jar,\ - lib/commons-lang3-3.5.jar,\ - lib/commons-beanutils-1.9.2.jar,\ - lib/bioinfweb-commons-java-bio-2.0.0.jar,\ - lib/bioinfweb-commons-java-core-2.2.0.jar,\ - lib/bioinfweb-commons-java-swing-2.2.0.jar,\ - lib/bioinfweb-commons-java-swt-2.0.0.jar,\ - lib/jphyloio-core-0.3.0.jar,\ - lib/libralign-biojava1-0.4.0-preview-2.jar,\ - lib/libralign-core-0.4.0-preview-2.jar,\ - lib/libralign-io-0.4.0-preview-2.jar,\ - lib/libralign-swt-0.4.0-preview-2.jar,\ - lib/tic-core-2.0.0-preview-2.jar,\ - lib/tic-swt-2.0.0-preview-2.jar - lib/jphyloio-core-0-SNAPSHOT.jar,\ - lib/owlapi-xmlutils-4.1.4.jar diff --git a/eu.etaxonomy.taxeditor.molecular.lib/pom.xml b/eu.etaxonomy.taxeditor.molecular.lib/pom.xml index 992a9205f..55d10338a 100644 --- a/eu.etaxonomy.taxeditor.molecular.lib/pom.xml +++ b/eu.etaxonomy.taxeditor.molecular.lib/pom.xml @@ -7,7 +7,7 @@ eu.etaxonomy taxeditor-parent - 4.5.0 + 4.5.1 @@ -154,12 +154,12 @@ info.bioinfweb.tic tic-core - 2.0.0-preview-2 + 2.0.0 info.bioinfweb.tic tic-swt - 2.0.0-preview-2 + 2.0.0 @@ -178,22 +178,22 @@ info.bioinfweb.libralign libralign-core - 0.4.0-preview-2 + 0.4.0 info.bioinfweb.libralign libralign-swt - 0.4.0-preview-2 + 0.4.0 info.bioinfweb.libralign libralign-biojava1 - 0.4.0-preview-2 + 0.4.0 info.bioinfweb.libralign libralign-io - 0.4.0-preview-2 + 0.4.0 diff --git a/eu.etaxonomy.taxeditor.molecular/META-INF/MANIFEST.MF b/eu.etaxonomy.taxeditor.molecular/META-INF/MANIFEST.MF index 3e30c6ad0..d9123c23d 100644 --- a/eu.etaxonomy.taxeditor.molecular/META-INF/MANIFEST.MF +++ b/eu.etaxonomy.taxeditor.molecular/META-INF/MANIFEST.MF @@ -2,7 +2,7 @@ Manifest-Version: 1.0 Bundle-ManifestVersion: 2 Bundle-Name: Molecular Bundle Bundle-SymbolicName: eu.etaxonomy.taxeditor.molecular;singleton:=true -Bundle-Version: 4.5.0 +Bundle-Version: 4.5.1 Bundle-Activator: eu.etaxonomy.taxeditor.molecular.TaxeditorMolecularPlugin Require-Bundle: org.eclipse.ui, org.eclipse.core.runtime, diff --git a/eu.etaxonomy.taxeditor.molecular/pom.xml b/eu.etaxonomy.taxeditor.molecular/pom.xml index c6189b2c8..24c56950e 100644 --- a/eu.etaxonomy.taxeditor.molecular/pom.xml +++ b/eu.etaxonomy.taxeditor.molecular/pom.xml @@ -3,7 +3,7 @@ eu.etaxonomy taxeditor-parent - 4.5.0 + 4.5.1 4.0.0 diff --git a/eu.etaxonomy.taxeditor.navigation/META-INF/MANIFEST.MF b/eu.etaxonomy.taxeditor.navigation/META-INF/MANIFEST.MF index 8b2d5ba83..03b6c6c06 100644 --- a/eu.etaxonomy.taxeditor.navigation/META-INF/MANIFEST.MF +++ b/eu.etaxonomy.taxeditor.navigation/META-INF/MANIFEST.MF @@ -2,7 +2,7 @@ Manifest-Version: 1.0 Bundle-ManifestVersion: 2 Bundle-Name: Navigation Bundle Bundle-SymbolicName: eu.etaxonomy.taxeditor.navigation;singleton:=true -Bundle-Version: 4.5.0 +Bundle-Version: 4.5.1 Bundle-Vendor: EDIT Export-Package: eu.etaxonomy.cdm, eu.etaxonomy.taxeditor.navigation, diff --git a/eu.etaxonomy.taxeditor.navigation/pom.xml b/eu.etaxonomy.taxeditor.navigation/pom.xml index 112c59c6e..b84288be0 100644 --- a/eu.etaxonomy.taxeditor.navigation/pom.xml +++ b/eu.etaxonomy.taxeditor.navigation/pom.xml @@ -3,7 +3,7 @@ eu.etaxonomy taxeditor-parent - 4.5.0 + 4.5.1 4.0.0 diff --git a/eu.etaxonomy.taxeditor.printpublisher/META-INF/MANIFEST.MF b/eu.etaxonomy.taxeditor.printpublisher/META-INF/MANIFEST.MF index 292aec6c5..0a3001567 100644 --- a/eu.etaxonomy.taxeditor.printpublisher/META-INF/MANIFEST.MF +++ b/eu.etaxonomy.taxeditor.printpublisher/META-INF/MANIFEST.MF @@ -2,7 +2,7 @@ Manifest-Version: 1.0 Bundle-ManifestVersion: 2 Bundle-Name: Printpublisher Bundle Bundle-SymbolicName: eu.etaxonomy.taxeditor.printpublisher;singleton:=true -Bundle-Version: 4.5.0 +Bundle-Version: 4.5.1 Require-Bundle: org.eclipse.osgi, org.eclipse.ui, eu.etaxonomy.taxeditor.cdmlib, diff --git a/eu.etaxonomy.taxeditor.printpublisher/pom.xml b/eu.etaxonomy.taxeditor.printpublisher/pom.xml index 95a599097..e4b725bce 100644 --- a/eu.etaxonomy.taxeditor.printpublisher/pom.xml +++ b/eu.etaxonomy.taxeditor.printpublisher/pom.xml @@ -3,7 +3,7 @@ taxeditor-parent eu.etaxonomy - 4.5.0 + 4.5.1 4.0.0 diff --git a/eu.etaxonomy.taxeditor.store/META-INF/MANIFEST.MF b/eu.etaxonomy.taxeditor.store/META-INF/MANIFEST.MF index ec1f04758..3c018f391 100644 --- a/eu.etaxonomy.taxeditor.store/META-INF/MANIFEST.MF +++ b/eu.etaxonomy.taxeditor.store/META-INF/MANIFEST.MF @@ -2,7 +2,7 @@ Manifest-Version: 1.0 Bundle-ManifestVersion: 2 Bundle-Name: DataStore Bundle Bundle-SymbolicName: eu.etaxonomy.taxeditor.store;singleton:=true -Bundle-Version: 4.5.0 +Bundle-Version: 4.5.1 Bundle-Activator: eu.etaxonomy.taxeditor.store.internal.TaxeditorStorePlugin Bundle-Vendor: EDIT Export-Package: eu.etaxonomy.cdm, diff --git a/eu.etaxonomy.taxeditor.store/pom.xml b/eu.etaxonomy.taxeditor.store/pom.xml index 3782c06d1..e9237e4dc 100644 --- a/eu.etaxonomy.taxeditor.store/pom.xml +++ b/eu.etaxonomy.taxeditor.store/pom.xml @@ -3,7 +3,7 @@ eu.etaxonomy taxeditor-parent - 4.5.0 + 4.5.1 4.0.0 diff --git a/eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/element/CdmFormFactory.java b/eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/element/CdmFormFactory.java index 2dea789ec..137e36afd 100644 --- a/eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/element/CdmFormFactory.java +++ b/eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/element/CdmFormFactory.java @@ -902,8 +902,7 @@ public class CdmFormFactory extends FormToolkit { @Deprecated public TermComboElement createTermComboElement(Class termComboType, ICdmFormElement parentElement, String labelString, T selection, int style) { - TermComboElement element = new TermComboElement(this, parentElement, termComboType, labelString, - selection, true, style); + TermComboElement element = new TermComboElement(this, parentElement, termComboType, labelString, selection, true, style); adapt(element); parentElement.addElement(element); return element; @@ -915,7 +914,7 @@ public class CdmFormFactory extends FormToolkit { String labelString, T selection, int style) { - return this.createDefinedTermComboElement(termType, null, parentElement, labelString, selection, false, style, true); + return this.createDefinedTermComboElement(termType, null, parentElement, labelString, selection, true, style, false); } public TermComboElement createDefinedTermComboElement( @@ -925,7 +924,7 @@ public class CdmFormFactory extends FormToolkit { T selection, boolean addEmptyElement, int style) { - return this.createDefinedTermComboElement(termType, null, parentElement, labelString, selection, addEmptyElement, style, true); + return this.createDefinedTermComboElement(termType, null, parentElement, labelString, selection, addEmptyElement, style, false); } public TermComboElement createDefinedTermComboElement( TermType termType, @@ -945,7 +944,7 @@ public class CdmFormFactory extends FormToolkit { String labelString, T selection, int style) { - return this.createDefinedTermComboElement(null, termVocabulary, parentElement, labelString, selection, false, style, true); + return this.createDefinedTermComboElement(null, termVocabulary, parentElement, labelString, selection, true, style, false); } public TermComboElement createDefinedTermComboElement( diff --git a/eu.etaxonomy.taxeditor.webapp/META-INF/MANIFEST.MF b/eu.etaxonomy.taxeditor.webapp/META-INF/MANIFEST.MF index c9d36b837..17ef63265 100644 --- a/eu.etaxonomy.taxeditor.webapp/META-INF/MANIFEST.MF +++ b/eu.etaxonomy.taxeditor.webapp/META-INF/MANIFEST.MF @@ -2,7 +2,7 @@ Manifest-Version: 1.0 Bundle-ManifestVersion: 2 Bundle-Name: Webapp Bundle-SymbolicName: eu.etaxonomy.taxeditor.webapp;singleton:=true -Bundle-Version: 4.5.0 +Bundle-Version: 4.5.1 Require-Bundle: org.eclipse.core.runtime Bundle-RequiredExecutionEnvironment: JavaSE-1.7 Bundle-ActivationPolicy: lazy diff --git a/eu.etaxonomy.taxeditor.webapp/pom.xml b/eu.etaxonomy.taxeditor.webapp/pom.xml index 5a1c82e84..f886609a8 100644 --- a/eu.etaxonomy.taxeditor.webapp/pom.xml +++ b/eu.etaxonomy.taxeditor.webapp/pom.xml @@ -4,7 +4,7 @@ eu.etaxonomy taxeditor-parent - 4.5.0 + 4.5.1 4.0.0 eu.etaxonomy.taxeditor.webapp diff --git a/eu.etaxonomy.taxeditor/eu.etaxonomy.taxeditor.product b/eu.etaxonomy.taxeditor/eu.etaxonomy.taxeditor.product index 49e797d73..8c9af5b72 100644 --- a/eu.etaxonomy.taxeditor/eu.etaxonomy.taxeditor.product +++ b/eu.etaxonomy.taxeditor/eu.etaxonomy.taxeditor.product @@ -1,5 +1,5 @@ - + diff --git a/eu.etaxonomy.taxeditor/eu.etaxonomy.taxeditor.product.with.jre b/eu.etaxonomy.taxeditor/eu.etaxonomy.taxeditor.product.with.jre index abfc8e680..26ab1847e 100644 --- a/eu.etaxonomy.taxeditor/eu.etaxonomy.taxeditor.product.with.jre +++ b/eu.etaxonomy.taxeditor/eu.etaxonomy.taxeditor.product.with.jre @@ -1,7 +1,7 @@ - + diff --git a/eu.etaxonomy.taxeditor/pom.xml b/eu.etaxonomy.taxeditor/pom.xml index 97cd2fc6c..fc2f6738a 100644 --- a/eu.etaxonomy.taxeditor/pom.xml +++ b/eu.etaxonomy.taxeditor/pom.xml @@ -2,7 +2,7 @@ eu.etaxonomy taxeditor-parent - 4.5.0 + 4.5.1 4.0.0 diff --git a/pom.xml b/pom.xml index 8bd42c312..fdc870dcd 100644 --- a/pom.xml +++ b/pom.xml @@ -6,7 +6,7 @@ eu.etaxonomy taxeditor-parent - 4.5.0 + 4.5.1 EDIT Taxonomic Editor The Taxonomic Editor for EDIT's platform for cybertaxonomy @@ -18,10 +18,10 @@ 1.7 UTF-8 - 4.5.0 + 4.5.1 0.22.0 - 4.5.0 + 4.5.1 snapshot 3.4.2 1.2.17