Merging latest changes from dev branch
authorn.hoffmann <n.hoffmann@localhost>
Wed, 14 Mar 2012 10:21:09 +0000 (10:21 +0000)
committern.hoffmann <n.hoffmann@localhost>
Wed, 14 Mar 2012 10:21:09 +0000 (10:21 +0000)
247 files changed:
.gitattributes
eu.etaxonomy.taxeditor.bulkeditor/src/main/java/eu/etaxonomy/taxeditor/annotatedlineeditor/handler/DeleteObjectHandler.java
eu.etaxonomy.taxeditor.bulkeditor/src/main/java/eu/etaxonomy/taxeditor/bulkeditor/handler/SetMergeTargetHandler.java
eu.etaxonomy.taxeditor.cdmlib/.classpath
eu.etaxonomy.taxeditor.cdmlib/build.properties
eu.etaxonomy.taxeditor.editor/plugin.xml
eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/key/polytomous/handler/CreateNodeHandler.java
eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/key/polytomous/handler/DeleteNodeHandler.java
eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/name/handler/ChangeSynonymToAcceptedTaxonHandler.java
eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/name/handler/CreateSynonymInHomotypicalGroupHandler.java
eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/name/handler/RemoveBasionymHandler.java
eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/name/handler/SetBasionymHandler.java
eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/concept/ConceptViewPart.java
eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/concept/graph/ConceptGraphContentProvider.java [new file with mode: 0644]
eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/concept/graph/ConceptGraphLabelProvider.java [new file with mode: 0644]
eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/concept/graph/ConceptGraphView.java [new file with mode: 0644]
eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/concept/handler/CreateConceptRelationHandler.java
eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/concept/handler/OpenRelatedConceptHandler.java
eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/concept/operation/CreateConceptRelationOperation.java
eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/descriptive/handler/CreateDescriptionElementHandler.java
eu.etaxonomy.taxeditor.feature.platform/feature.xml
eu.etaxonomy.taxeditor.help/html/concepts/maintopic.html [deleted file]
eu.etaxonomy.taxeditor.help/html/concepts/subtopic.html [deleted file]
eu.etaxonomy.taxeditor.help/html/concepts/subtopic2.html [deleted file]
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eu.etaxonomy.taxeditor.help/html/nameparser/authorship_part.html [new file with mode: 0644]
eu.etaxonomy.taxeditor.help/html/nameparser/name_part.html [new file with mode: 0644]
eu.etaxonomy.taxeditor.help/html/nameparser/nomenclatural_status_part.html [new file with mode: 0644]
eu.etaxonomy.taxeditor.help/html/nameparser/overview.html [new file with mode: 0644]
eu.etaxonomy.taxeditor.help/html/nameparser/reference_part.html [new file with mode: 0644]
eu.etaxonomy.taxeditor.help/html/reference/maintopic.html [deleted file]
eu.etaxonomy.taxeditor.help/html/reference/subtopic.html [deleted file]
eu.etaxonomy.taxeditor.help/html/reference/subtopic2.html [deleted file]
eu.etaxonomy.taxeditor.help/html/samples/maintopic.html [deleted file]
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eu.etaxonomy.taxeditor.help/html/samples/subtopic2.html [deleted file]
eu.etaxonomy.taxeditor.help/html/tasks/maintopic.html [deleted file]
eu.etaxonomy.taxeditor.help/html/tasks/subtopic.html [deleted file]
eu.etaxonomy.taxeditor.help/html/tasks/subtopic2.html [deleted file]
eu.etaxonomy.taxeditor.help/html/toc.html [deleted file]
eu.etaxonomy.taxeditor.help/plugin.xml
eu.etaxonomy.taxeditor.help/toc.xml
eu.etaxonomy.taxeditor.help/tocnameparser.xml [new file with mode: 0644]
eu.etaxonomy.taxeditor.navigation/plugin.xml
eu.etaxonomy.taxeditor.store/plugin.xml
eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/model/TextHelper.java
eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/newWizard/AbstractNewEntityWizard.java
eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/newWizard/NewClassificationWizard.java
eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/newWizard/NewCollectionWizard.java
eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/newWizard/NewDerivedUnitBaseWizard.java
eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/newWizard/NewFieldObservationWizard.java
eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/newWizard/NewGroupWizard.java
eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/newWizard/NewInstitutionWizard.java
eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/newWizard/NewNonViralNameWizard.java
eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/newWizard/NewPersonWizard.java
eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/newWizard/NewPolytomousKeyWizard.java
eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/newWizard/NewReferenceWizard.java
eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/newWizard/NewTaxonNodeWizard.java
eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/newWizard/NewTeamWizard.java
eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/newWizard/NewUserWizard.java
eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/combo/TermComboElement.java
eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/description/detail/CommonNameDetailElement.java
eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/description/detail/TaxonInteractionDetailElement.java
eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/selection/EditFromSelectionWizard.java
eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/view/datasource/handler/AbstractDataSourceHandler.java
eu.etaxonomy.taxeditor/pom.xml
pom.xml
src/site/apt/getting-started.apt

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@@ -432,6 +432,9 @@ eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/c
 eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/concept/ConceptLabelProvider.java -text
 eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/concept/ConceptViewPart.java -text
 eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/concept/ConceptViewerSorter.java -text
+eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/concept/graph/ConceptGraphContentProvider.java -text
+eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/concept/graph/ConceptGraphLabelProvider.java -text
+eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/concept/graph/ConceptGraphView.java -text
 eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/concept/handler/AbstractDynamicConceptRelationMenu.java -text
 eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/concept/handler/ChangeConceptRelationshipTypeHandler.java -text
 eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/concept/handler/ChangeConceptRelationshipTypeMenu.java -text
@@ -510,9 +513,6 @@ eu.etaxonomy.taxeditor.help/.classpath -text
 eu.etaxonomy.taxeditor.help/.project -text
 eu.etaxonomy.taxeditor.help/META-INF/MANIFEST.MF -text
 eu.etaxonomy.taxeditor.help/build.properties -text
-eu.etaxonomy.taxeditor.help/html/concepts/maintopic.html -text
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-eu.etaxonomy.taxeditor.help/html/concepts/subtopic2.html -text
 eu.etaxonomy.taxeditor.help/html/gettingstarted/a_succesful_parsed_taxon_record.html -text
 eu.etaxonomy.taxeditor.help/html/gettingstarted/about_bulk_editing.html -text
 eu.etaxonomy.taxeditor.help/html/gettingstarted/about_the_manual.html -text
@@ -590,207 +590,203 @@ eu.etaxonomy.taxeditor.help/html/gettingstarted/types_of_supplemental_data.html
 eu.etaxonomy.taxeditor.help/html/gettingstarted/uninomial_and_specific_epithet.html -text
 eu.etaxonomy.taxeditor.help/html/gettingstarted/windows_vista.html -text
 eu.etaxonomy.taxeditor.help/html/gettingstarted/windows_xp_and_older_systems.html -text
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+eu.etaxonomy.taxeditor.help/tocnameparser.xml -text
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index 127ffc81cabb34700e61f509b414452fe4c3ef91..f8014e3a3b29bfe0ab41f255d7f8285d29791498 100644 (file)
@@ -38,7 +38,7 @@ public class DeleteObjectHandler extends AbstractHandler {
                
                if (editor instanceof AnnotatedLineEditor) {
                                                
-                       ISelection selection = HandlerUtil.getActiveMenuSelection(event);
+                       ISelection selection = HandlerUtil.getCurrentSelection(event);
                        if (selection instanceof TextSelection) {
                                
                                // Get current line
index bc11b149bc1ac9d4d2df51f66e414fce1893fd00..98491db149451b2a5e54fa5fefdd4b0a52140d77 100644 (file)
@@ -51,7 +51,7 @@ public class SetMergeTargetHandler extends AbstractHandler {
                                        (LineAnnotationModel) provider.getAnnotationModel(input);
                        IDocument document = provider.getDocument(input);
                        
-                       ISelection selection = HandlerUtil.getActiveMenuSelection(event);
+                       ISelection selection = HandlerUtil.getCurrentSelection(event);
                        if (selection instanceof TextSelection) {
                                Annotation annotation = null;
                                
index d33912548c13d9deacc2251f2a8a34789f10e051..bab4e61759db18d74a61cdbfd2192feaaaa6c4a6 100644 (file)
@@ -1,14 +1,5 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <classpath>
-       <classpathentry exported="true" kind="lib" path="lib/cdmlib-commons-3.0.10-SNAPSHOT.jar"/>
-       <classpathentry exported="true" kind="lib" path="lib/cdmlib-ext-3.0.10-SNAPSHOT.jar"/>
-       <classpathentry exported="true" kind="lib" path="lib/cdmlib-io-3.0.10-SNAPSHOT.jar"/>
-       <classpathentry exported="true" kind="lib" path="lib/cdmlib-model-3.0.10-SNAPSHOT.jar"/>
-       <classpathentry exported="true" kind="lib" path="lib/cdmlib-persistence-3.0.10-SNAPSHOT.jar"/>
-       <classpathentry exported="true" kind="lib" path="lib/cdmlib-print-3.0.10-SNAPSHOT.jar"/>
-       <classpathentry exported="true" kind="lib" path="lib/cdmlib-remote-3.0.10-SNAPSHOT.jar"/>
-       <classpathentry exported="true" kind="lib" path="lib/cdmlib-services-3.0.10-SNAPSHOT.jar"/>
-       <classpathentry exported="true" kind="lib" path="lib/hibernate-envers-3.4.0-SNAPSHOT.jar"/>
        <classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.6"/>
        <classpathentry kind="con" path="org.eclipse.pde.core.requiredPlugins"/>
        <classpathentry exported="true" kind="lib" path="lib/activation-1.1.jar" sourcepath="lib/activation-1.1src.zip"/>
        <classpathentry exported="true" kind="lib" path="lib/xom-1.0.jar"/>
        <classpathentry exported="true" kind="lib" path="lib/xsltc.jar"/>
        <classpathentry exported="true" kind="lib" path="lib/xstream-1.3.1.jar" sourcepath="lib/xstream-1.3.1src.zip"/>
+       <classpathentry exported="true" kind="lib" path="lib/hibernate-envers-3.4.0-SNAPSHOT.jar" sourcepath="lib/hibernate-envers-3.4.0-SNAPSHOTsrc.zip"/>
+       <classpathentry exported="true" kind="lib" path="lib/cdmlib-commons-3.0.10-SNAPSHOT.jar"/>
+       <classpathentry exported="true" kind="lib" path="lib/cdmlib-ext-3.0.10-SNAPSHOT.jar"/>
+       <classpathentry exported="true" kind="lib" path="lib/cdmlib-io-3.0.10-SNAPSHOT.jar"/>
+       <classpathentry exported="true" kind="lib" path="lib/cdmlib-model-3.0.10-SNAPSHOT.jar"/>
+       <classpathentry exported="true" kind="lib" path="lib/cdmlib-persistence-3.0.10-SNAPSHOT.jar"/>
+       <classpathentry exported="true" kind="lib" path="lib/cdmlib-print-3.0.10-SNAPSHOT.jar"/>
+       <classpathentry exported="true" kind="lib" path="lib/cdmlib-remote-3.0.10-SNAPSHOT.jar"/>
+       <classpathentry exported="true" kind="lib" path="lib/cdmlib-services-3.0.10-SNAPSHOT.jar"/>
        <classpathentry kind="output" path="target/classes"/>
 </classpath>
index 7029e7238058fe1f191b3dfeb02c700076ab2376..81b7b552e33c6443e057b4e4ed696bdb29da21ba 100644 (file)
@@ -65,7 +65,6 @@ bin.includes = META-INF/,\
                lib/jsr250-api-1.0.jar,\\r
                lib/jta.jar,\\r
                lib/jtds-1.2.2.jar,\\r
-               lib/junit-4.4.jar,\\r
                lib/junit-4.8.1.jar,\\r
                lib/log4j-1.2.14.jar,\\r
                lib/lsid-client-1.1.2.jar,\\r
@@ -132,17 +131,8 @@ bin.includes = META-INF/,\
                lib/cdmlib-services-3.0.10-SNAPSHOT.jar\r
 jars.compile.order = cdmLibrary.jar\r
 src.includes = lib/\r
-jre.compilation.profile = J2SE-1.6\r
 bin.excludes = lib/activation-1.1src.zip,\\r
                lib/c3p0-0.9.1src.zip,\\r
-               lib/cdmlib-commons-3.0-sources.jar,\\r
-               lib/cdmlib-ext-3.0-sources.jar,\\r
-               lib/cdmlib-io-3.0-sources.jar,\\r
-               lib/cdmlib-model-3.0-sources.jar,\\r
-               lib/cdmlib-persistence-3.0-sources.jar,\\r
-               lib/cdmlib-print-3.0-sources.jar,\\r
-               lib/cdmlib-remote-3.0-sources.jar,\\r
-               lib/cdmlib-services-3.0-sources.jar,\\r
                lib/commons-beanutils-1.7.0src.zip,\\r
                lib/commons-collections-3.2src.zip,\\r
                lib/commons-dbcp-1.2.2src.zip,\\r
@@ -188,19 +178,8 @@ bin.excludes = lib/activation-1.1src.zip,\
                lib/slf4j-log4j12-1.5.2src.zip,\\r
                lib/spring-modules-cache-0.7src.zip,\\r
                lib/spring-modules-lucene-0.8asrc.zip,\\r
-               lib/spring-security-core-3.0.0.RELEASEsrc.zip,\\r
                lib/wsdl4j-1.6.1src.zip,\\r
                lib/xml-resolver-1.2src.zip,\\r
                lib/xstream-1.3.1src.zip,\\r
-               lib/junit-4.8.1src.zip,\\r
-               lib/cdmlib-services-3.0.6-SNAPSHOT-sources.jar,\\r
-               lib/cdmlib-remote-3.0.6-SNAPSHOT-sources.jar,\\r
-               lib/cdmlib-print-3.0.6-SNAPSHOT-sources.jar,\\r
-               lib/cdmlib-persistence-3.0.6-SNAPSHOT-sources.jar,\\r
-               lib/cdmlib-model-3.0.6-SNAPSHOT-sources.jar,\\r
-               lib/cdmlib-io-3.0.6-SNAPSHOT-sources.jar,\\r
-               lib/cdmlib-ext-3.0.6-SNAPSHOT-sources.jar,\\r
-               lib/cdmlib-commons-3.0.6-SNAPSHOT-sources.jar,\\r
-               lib/cdmlib-commons-3.0.6-SNAPSHOT.jar,\\r
-               lib/cdmlib-ext-3.0.6-SNAPSHOT.jar\r
+               lib/junit-4.8.1src.zip\r
 \r
index 99bef4cf7d14692d4be97fafc7c4ec8273780c2b..310d67404b027ea4c662b371a2ad1585f304dfd4 100644 (file)
                name="Concept Relations"
                restorable="true">
          </view>
+         <view
+               class="eu.etaxonomy.taxeditor.editor.view.concept.graph.ConceptGraphView"
+               icon="icons/address-book-new.png"
+               id="eu.etaxonomy.taxeditor.editor.view.concept.graph"
+               name="Concept Graph"
+               restorable="true">
+         </view>
       </extension>
    <extension
          point="org.eclipse.ui.elementFactories">
                   value="eu.etaxonomy.taxeditor.editor.view.concept">
             </parameter>
          </command>
+         <command
+               commandId="org.eclipse.ui.views.showView"
+               label="Concept Graph"
+               style="push">
+            <parameter
+                  name="org.eclipse.ui.views.showView.viewId"
+                  value="eu.etaxonomy.taxeditor.editor.view.concept.graph">
+            </parameter>
+            <visibleWhen
+                  checkEnabled="false">
+               <reference
+                     definitionId="isShowExperimentalFeatures">
+               </reference>
+            </visibleWhen>
+         </command>
       </menuContribution>
       <menuContribution
             locationURI="menu:org.eclipse.ui.main.menu.navigate">
index d1d4a917dd97f4567f57ef6f8ce1e291842b76b1..c0a5a57efd0709fec40244b32c721083e498e9df 100644 (file)
@@ -42,7 +42,7 @@ public class CreateNodeHandler extends AbstractHandler {
                                        .getActiveEditor();
 
                        IStructuredSelection selection = (IStructuredSelection) HandlerUtil
-                                       .getActiveMenuSelection(event);
+                                       .getCurrentSelection(event);
 
                        if (selection.getFirstElement() instanceof PolytomousKeyNode) {
                                try {
index d9e42c575d974b0c05581c43f87ab89b75ab35f9..988564378556ac3167280f5702a803e238e2f71c 100644 (file)
@@ -49,7 +49,7 @@ public class DeleteNodeHandler extends AbstractHandler {
                                        .getActiveEditor();
 
                        IStructuredSelection selection = (IStructuredSelection) HandlerUtil
-                                       .getActiveMenuSelection(event);
+                                       .getCurrentSelection(event);
 
                        if (selection.getFirstElement() instanceof PolytomousKeyNode) {
                                try {
index bd7c846a80341fcce2d856590a44b89a5c56c741..b710737bcbfb40eff19c51dcf02f5d14e7ff0c80 100644 (file)
@@ -63,7 +63,7 @@ public class ChangeSynonymToAcceptedTaxonHandler extends AbstractHandler impleme
                }
 
                // Get synonym from selection
-               StructuredSelection selection = (StructuredSelection) HandlerUtil.getActiveMenuSelection(event);
+               StructuredSelection selection = (StructuredSelection) HandlerUtil.getCurrentSelection(event);
                if (!(selection.getFirstElement() instanceof Synonym)) {
                        logger.error("Selection does not contain a Synonym");
                        return null;
index 49048fe820a45f97fbb1e215fb803c150b2b5594..4d19f059ce7e6e6544a901a9900e971a44e99a89 100644 (file)
@@ -49,7 +49,7 @@ public class CreateSynonymInHomotypicalGroupHandler extends AbstractHandler
        public Object execute(ExecutionEvent event) throws ExecutionException {
                TaxonNameEditor editor = (TaxonNameEditor) EditorUtil.getActiveEditorPage(
                                Page.NAME);
-               ISelection menuSelection = HandlerUtil.getActiveMenuSelection(event);
+               ISelection menuSelection = HandlerUtil.getCurrentSelection(event);
                
                Object selecteObject = ((StructuredSelection) menuSelection).getFirstElement();
                
index c5d5cf8e147508ff5bd347a2384f09f39e503a26..c3b6b015a59e82c15ec4e12b0e65b1aab839b8aa 100644 (file)
@@ -45,7 +45,7 @@ public class RemoveBasionymHandler extends AbstractHandler implements IHandler {
                TaxonNameEditor editor = (TaxonNameEditor) EditorUtil.getActiveEditorPage(
                                Page.NAME);
                
-               IStructuredSelection selection = (IStructuredSelection) HandlerUtil.getActiveMenuSelection(event);
+               IStructuredSelection selection = (IStructuredSelection) HandlerUtil.getCurrentSelection(event);
                
                TaxonBase selectedTaxonBase = (TaxonBase) selection.getFirstElement();
 
index 20442c61bcc0918549a1492f6966e9dff3b4342e..5a5ece4cf6e50f9103dc60ffce465adc56d23e8d 100644 (file)
@@ -45,7 +45,7 @@ public class SetBasionymHandler extends AbstractHandler implements IHandler {
                TaxonNameEditor editor = (TaxonNameEditor) EditorUtil.getActiveEditorPage(
                                Page.NAME);
                
-               IStructuredSelection selection = (IStructuredSelection) HandlerUtil.getActiveMenuSelection(event);
+               IStructuredSelection selection = (IStructuredSelection) HandlerUtil.getCurrentSelection(event);
                                
                TaxonBase selectedTaxonBase = (TaxonBase) selection.getFirstElement();
 
index f44d0b1516d56081ee353471449bca8fe3db3df1..4aa081d5c94a35a9dae38bad8ba35ba95d9dabec 100644 (file)
@@ -58,7 +58,8 @@ public class ConceptViewPart extends AbstractCdmEditorViewPart {
                }
                
                if(part instanceof AbstractGraphKeyEditor){
-                       
+                       showEmptyPage();
+                       return;
                }
                
                if(part instanceof MultiPageTaxonEditor){
diff --git a/eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/concept/graph/ConceptGraphContentProvider.java b/eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/concept/graph/ConceptGraphContentProvider.java
new file mode 100644 (file)
index 0000000..d444bc6
--- /dev/null
@@ -0,0 +1,107 @@
+/**
+ * 
+ */
+package eu.etaxonomy.taxeditor.editor.view.concept.graph;
+
+import java.util.Set;
+import java.util.HashMap;
+import java.util.Map;
+
+import org.eclipse.jface.viewers.Viewer;
+import org.eclipse.zest.core.viewers.IGraphContentProvider;
+
+
+
+import eu.etaxonomy.cdm.model.taxon.Taxon;
+import eu.etaxonomy.cdm.model.taxon.TaxonRelationship;
+import eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType;
+import eu.etaxonomy.taxeditor.editor.TaxonEditorInput;
+
+/**
+ * @author andreas 
+ *
+ */
+public class ConceptGraphContentProvider implements IGraphContentProvider {
+
+       /* (non-Javadoc)
+        * @see org.eclipse.jface.viewers.IContentProvider#dispose()
+        */
+       @Override
+       public void dispose() {
+               // TODO Auto-generated method stub
+
+       }
+
+       /* (non-Javadoc)
+        * @see org.eclipse.jface.viewers.IContentProvider#inputChanged(org.eclipse.jface.viewers.Viewer, java.lang.Object, java.lang.Object)
+        */
+       @Override
+       public void inputChanged(Viewer viewer, Object oldInput, Object newInput) {
+               // TODO Auto-generated method stub
+
+       }
+
+       /* (non-Javadoc)
+        * @see org.eclipse.zest.core.viewers.IGraphContentProvider#getSource(java.lang.Object)
+        */
+       @Override
+       public Object getSource(Object taxonRelationship) {
+               return ((TaxonRelationship)taxonRelationship).getFromTaxon();
+       }
+
+       /* (non-Javadoc)
+        * @see org.eclipse.zest.core.viewers.IGraphContentProvider#getDestination(java.lang.Object)
+        */
+       @Override
+       public Object getDestination(Object taxonRelationship) {
+               return ((TaxonRelationship)taxonRelationship).getToTaxon();
+       }
+
+       /* (non-Javadoc)
+        * @see org.eclipse.zest.core.viewers.IGraphContentProvider#getElements(java.lang.Object)
+        */
+       @Override
+       public Object[] getElements(Object inputElement) {
+               if(inputElement instanceof TaxonEditorInput){
+                       Taxon taxon = ((TaxonEditorInput) inputElement).getTaxon();
+
+                       Map<String, TaxonRelationship> filteredTaxonRelations = new HashMap<String, TaxonRelationship>();
+                       getTaxonRelationshipsRecursive(filteredTaxonRelations, taxon);
+                       
+                       return filteredTaxonRelations.values().toArray();
+               }
+               return new Object[0];
+       }
+
+       private void getTaxonRelationshipsRecursive(Map<String, TaxonRelationship> filteredTaxonRelations, Taxon taxon) {
+               // TODO extract method into new class TaxonHelper in
+               // eu.etaxonomy.taxeditor.model;
+               // see also ConceptContentProvider
+               for (TaxonRelationship relationship : taxon.getTaxonRelations()) {
+                       
+                       if (!relationship.getType().equals(TaxonRelationshipType.MISAPPLIED_NAME_FOR())
+                                       && !relationship.getType().equals(TaxonRelationshipType.INVALID_DESIGNATION_FOR())
+                                       && !relationship.getType().equals(TaxonRelationshipType.TAXONOMICALLY_INCLUDED_IN())) {
+                               
+                               if(!relationship.getToTaxon().equals(taxon)){
+                                       continue;
+                               }
+                               
+                               String key = relationship.getFromTaxon().getUuid().toString() + relationship.getType().getUuid();
+                               if(!filteredTaxonRelations.containsKey(key)) {
+                                       filteredTaxonRelations.put(key, relationship);                                  
+                                       Taxon toTaxon = relationship.getToTaxon();
+                                       if(toTaxon != null){
+                                               getTaxonRelationshipsRecursive(filteredTaxonRelations, toTaxon);
+       
+                                       }
+                               }
+                       }
+                       
+                       
+               }
+               
+               
+       }
+
+}
diff --git a/eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/concept/graph/ConceptGraphLabelProvider.java b/eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/concept/graph/ConceptGraphLabelProvider.java
new file mode 100644 (file)
index 0000000..fe431c8
--- /dev/null
@@ -0,0 +1,86 @@
+/**
+ * 
+ */
+package eu.etaxonomy.taxeditor.editor.view.concept.graph;
+
+import org.eclipse.draw2d.IFigure;
+import org.eclipse.draw2d.Label;
+import org.eclipse.jface.viewers.LabelProvider;
+import org.eclipse.swt.graphics.Color;
+import org.eclipse.zest.core.viewers.IEntityStyleProvider;
+
+import eu.etaxonomy.cdm.model.common.Language;
+import eu.etaxonomy.cdm.model.taxon.Taxon;
+import eu.etaxonomy.cdm.model.taxon.TaxonRelationship;
+import eu.etaxonomy.taxeditor.store.CdmStore;
+
+/**
+ * @author andreas
+ * 
+ */
+public class ConceptGraphLabelProvider extends LabelProvider implements
+               IEntityStyleProvider {
+       
+       
+
+       @Override
+       public String getText(Object element) {
+               if(element instanceof Taxon){
+                       return ((Taxon)element).getTitleCache();
+               } else if( element instanceof TaxonRelationship) {
+                       return ((TaxonRelationship)element).getType().getRepresentation(Language.ENGLISH()).getAbbreviatedLabel();
+               }
+               return "TODO";
+       }
+
+       @Override
+       public Color getNodeHighlightColor(Object entity) {
+               // TODO Auto-generated method stub
+               return null;
+       }
+
+       @Override
+       public Color getBorderColor(Object entity) {
+               // TODO Auto-generated method stub
+               return null;
+       }
+
+       @Override
+       public Color getBorderHighlightColor(Object entity) {
+               // TODO Auto-generated method stub
+               return null;
+       }
+
+       @Override
+       public int getBorderWidth(Object entity) {
+               // TODO Auto-generated method stub
+               return 0;
+       }
+
+       @Override
+       public Color getBackgroundColour(Object entity) {
+               // TODO Auto-generated method stub
+               return null;
+       }
+
+       @Override
+       public Color getForegroundColour(Object entity) {
+               // TODO Auto-generated method stub
+               return null;
+       }
+
+       @Override
+       public IFigure getTooltip(Object element) {
+               if( element instanceof TaxonRelationship) {
+                       return new Label(((TaxonRelationship)element).getType().getRepresentation(CdmStore.getDefaultLanguage()).getLabel());
+               }
+               return null;
+       }
+
+       @Override
+       public boolean fisheyeNode(Object entity) {
+               // TODO Auto-generated method stub
+               return false;
+       }
+
+}
diff --git a/eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/concept/graph/ConceptGraphView.java b/eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/concept/graph/ConceptGraphView.java
new file mode 100644 (file)
index 0000000..c7a2f9c
--- /dev/null
@@ -0,0 +1,128 @@
+/**
+ * 
+ */
+package eu.etaxonomy.taxeditor.editor.view.concept.graph;
+
+import org.eclipse.jface.viewers.ISelection;
+import org.eclipse.jface.viewers.LabelProvider;
+import org.eclipse.jface.viewers.StructuredSelection;
+import org.eclipse.jface.viewers.Viewer;
+import org.eclipse.swt.SWT;
+import org.eclipse.swt.widgets.Composite;
+import org.eclipse.ui.IEditorInput;
+import org.eclipse.ui.IEditorPart;
+import org.eclipse.ui.IWorkbenchPart;
+import org.eclipse.zest.core.viewers.GraphViewer;
+import org.eclipse.zest.core.widgets.ZestStyles;
+import org.eclipse.zest.layouts.LayoutAlgorithm;
+import org.eclipse.zest.layouts.LayoutStyles;
+import org.eclipse.zest.layouts.algorithms.TreeLayoutAlgorithm;
+
+import eu.etaxonomy.taxeditor.bulkeditor.BulkEditor;
+import eu.etaxonomy.taxeditor.editor.EditorUtil;
+import eu.etaxonomy.taxeditor.editor.MultiPageTaxonEditor;
+import eu.etaxonomy.taxeditor.editor.key.AbstractGraphKeyEditor;
+import eu.etaxonomy.taxeditor.view.AbstractCdmEditorViewPart;
+
+/**
+ * @author andreas
+ *
+ */
+public class ConceptGraphView extends AbstractCdmEditorViewPart {
+       
+       public static final String ID = "eu.etaxonomy.taxeditor.editor.view.concept.graph";
+
+       private GraphViewer viewer;
+       private LayoutAlgorithm layoutAlgoritm;
+
+       /* (non-Javadoc)
+        * @see org.eclipse.ui.ISelectionListener#selectionChanged(org.eclipse.ui.IWorkbenchPart, org.eclipse.jface.viewers.ISelection)
+        */
+       @Override
+       public void selectionChanged(IWorkbenchPart part, ISelection selection) {
+
+//             if(part instanceof ConceptGraphView){
+//                     // ConceptGraphView is maximized
+//                     return;
+//             }
+               
+               if(EditorUtil.getActiveEditor() == null){
+                       showEmptyPage();
+                       return;
+               }
+               
+               if(part instanceof BulkEditor){
+                       showEmptyPage();
+                       return;
+               }
+               
+               
+               if(part instanceof MultiPageTaxonEditor){
+                       if(! part.equals(this.part)){
+                               IEditorInput input = ((IEditorPart) part).getEditorInput();
+                               showViewer(part, new StructuredSelection(input));
+                       }
+                       showViewer();
+               }
+
+       }
+
+       /* (non-Javadoc)
+        * @see eu.etaxonomy.taxeditor.operation.IPostOperationEnabled#onComplete()
+        */
+       @Override
+       public boolean onComplete() {
+               // TODO IGNORED
+               return false;
+       }
+
+       /* (non-Javadoc)
+        * @see eu.etaxonomy.taxeditor.view.AbstractCdmViewPart#getViewer()
+        */
+       @Override
+       public Viewer getViewer() {
+               return viewer;
+       }
+
+       /* (non-Javadoc)
+        * @see eu.etaxonomy.taxeditor.view.AbstractCdmViewPart#createViewer(org.eclipse.swt.widgets.Composite)
+        */
+       @Override
+       public void createViewer(Composite parent) {
+               
+               viewer = new GraphViewer(parent, SWT.NONE);
+               getSite().setSelectionProvider(viewer);
+
+               viewer.setContentProvider(new ConceptGraphContentProvider());
+               viewer.setLabelProvider(new ConceptGraphLabelProvider());
+
+               viewer.setConnectionStyle(ZestStyles.CONNECTIONS_DIRECTED);
+
+               viewer.setLayoutAlgorithm(getLayoutAlgoritm(), false);
+
+//             createMenu();
+//
+//             createToolbar();
+
+
+       }
+
+       private LayoutAlgorithm getLayoutAlgoritm() {
+
+               if (layoutAlgoritm == null) {
+                       // layoutAlgoritm = new CompositeLayoutAlgorithm(
+                       // LayoutStyles.NO_LAYOUT_NODE_RESIZING,
+                       // new LayoutAlgorithm[] {
+                       // new TreeLayoutAlgorithm(
+                       // LayoutStyles.NO_LAYOUT_NODE_RESIZING),
+                       // new HorizontalShift(
+                       // LayoutStyles.NO_LAYOUT_NODE_RESIZING) });
+
+                       layoutAlgoritm = new TreeLayoutAlgorithm(
+                                       LayoutStyles.NO_LAYOUT_NODE_RESIZING);
+                       layoutAlgoritm.setEntityAspectRatio(0.5);
+               }
+               return layoutAlgoritm;
+       }
+
+}
index 4ba5ee029d6087a31a849a90c466519bf42f4056..533d3b8865953644927411a3bbb2dc6b6c52571b 100644 (file)
 
 package eu.etaxonomy.taxeditor.editor.view.concept.handler;
 
+import org.apache.log4j.Level;
+import org.apache.log4j.Logger;
 import org.eclipse.core.commands.AbstractHandler;
 import org.eclipse.core.commands.ExecutionEvent;
 import org.eclipse.core.commands.ExecutionException;
 import org.eclipse.core.commands.common.NotDefinedException;
+import org.eclipse.core.expressions.IEvaluationContext;
 import org.eclipse.core.runtime.Status;
 import org.eclipse.swt.widgets.Event;
 import org.eclipse.ui.IWorkbenchPart;
@@ -37,7 +40,7 @@ import eu.etaxonomy.taxeditor.ui.dialog.selection.TaxonBaseSelectionDialog;
  * @version 1.0
  */
 public class CreateConceptRelationHandler extends AbstractHandler {
-
+       
        /* (non-Javadoc)
         * @see org.eclipse.core.commands.IHandler#execute(org.eclipse.core.commands.ExecutionEvent)
         */
@@ -48,15 +51,22 @@ public class CreateConceptRelationHandler extends AbstractHandler {
                
                Taxon taxonToBeFiltered = editor.getTaxon();
                
+               /* we need to get the activePart before calling TaxonBaseSelectionDialog.selectTaxon(), otherwise the 
+                * the variable of the parent applicationContext in event are overwritten during this method call
+                * this is Linux specific bugfix see: #2685 ([LINUX] Editing concept relationships does not work under linux)
+                */
+               IWorkbenchPart activePart = HandlerUtil.getActivePart(event);
+
                Taxon relatedConcept = TaxonBaseSelectionDialog.selectTaxon(HandlerUtil.getActiveShell(event), editor.getConversationHolder(), taxonToBeFiltered);
-                               
+                                       
+               
                if(relatedConcept == null){
                        return Status.CANCEL_STATUS;
                }
                
                TaxonRelationshipTypeInverseContainer typeInverseContainer = (TaxonRelationshipTypeInverseContainer) ((Event)event.getTrigger()).data;
                
-               IWorkbenchPart activePart = HandlerUtil.getActivePart(event);
+
                IPostOperationEnabled postOperationEnabled = (activePart instanceof IPostOperationEnabled) ? (IPostOperationEnabled) activePart : null;
                
                try {
index 317ae6a6dd2f066c1753116a1222b839a392ec7d..502d9b94b0573e58905e5895fc4f77ad2f5eae29 100644 (file)
@@ -39,7 +39,7 @@ public class OpenRelatedConceptHandler extends AbstractHandler {
        public Object execute(ExecutionEvent event) throws ExecutionException {
                MultiPageTaxonEditor editor = EditorUtil.getActiveMultiPageTaxonEditor();
                
-               ISelection selection = HandlerUtil.getActiveMenuSelection(event);
+               ISelection selection = HandlerUtil.getCurrentSelection(event);
                
                if(selection instanceof IStructuredSelection){
                        IStructuredSelection structuredSelection = (IStructuredSelection) selection;
index 9b690254ba7ba7bb8769fbad1e82b35eebc4f421..29079f925e0276991adfbcecf36f166e6f77ced5 100644 (file)
@@ -71,7 +71,7 @@ public class CreateConceptRelationOperation extends AbstractPostOperation {
                if(taxonRelationshipTypeInverseContainer.isInverse()){
                        concept.addTaxonRelation(taxon, taxonRelationshipTypeInverseContainer.getType(), null, null);   
                } else {
-                       taxon.addTaxonRelation(concept, taxonRelationshipTypeInverseContainer.getType(), null, null);   
+                       taxon.addTaxonRelation(concept, taxonRelationshipTypeInverseContainer.getType(), null, null);
                }
                monitor.worked(40);
                
index f388f018e6c7fd1a395ee1592af78092e7c75b9e..65d4d3d5d20d0360f46577c702414204388ba342 100644 (file)
@@ -66,7 +66,7 @@ public class CreateDescriptionElementHandler extends AbstractHandler {
 
                        TaxonDescription description = null;
 
-                       ISelection selection = HandlerUtil.getActiveMenuSelection(event);
+                       ISelection selection = HandlerUtil.getCurrentSelection(event);
                        if (selection instanceof ITreeSelection) {
                                TreePath[] paths = ((ITreeSelection) selection).getPaths();
                                Object firstSegment = paths[0].getFirstSegment();
index 7c99c9f608dadd50931d6f90eb6e61f42a42fb0c..6f8502ac282666060ee24139de635a3e094fe899 100644 (file)
@@ -916,4 +916,11 @@ Software distributed under the License is distributed on an &quot;AS IS&quot; ba
          version="0.0.0"
          unpack="false"/>
 
+   <plugin
+         id="org.hamcrest.text"
+         download-size="0"
+         install-size="0"
+         version="0.0.0"
+         unpack="false"/>
+
 </feature>
diff --git a/eu.etaxonomy.taxeditor.help/html/concepts/maintopic.html b/eu.etaxonomy.taxeditor.help/html/concepts/maintopic.html
deleted file mode 100644 (file)
index a476078..0000000
+++ /dev/null
@@ -1,13 +0,0 @@
-<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN">
-
-<html>
-<head>
-       <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1">
-       <title>Main Topic</title>
-</head>
-
-<body>
-<h1>Main Topic</h1>
-Please enter your text here.
-</body>
-</html>
\ No newline at end of file
diff --git a/eu.etaxonomy.taxeditor.help/html/concepts/subtopic.html b/eu.etaxonomy.taxeditor.help/html/concepts/subtopic.html
deleted file mode 100644 (file)
index 8a61c50..0000000
+++ /dev/null
@@ -1,13 +0,0 @@
-<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN">
-
-<html>
-<head>
-       <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1">
-       <title>Sub Topic</title>
-</head>
-
-<body>
-<h1>Sub Topic</h1>
-Please enter your text here.
-</body>
-</html>
\ No newline at end of file
diff --git a/eu.etaxonomy.taxeditor.help/html/concepts/subtopic2.html b/eu.etaxonomy.taxeditor.help/html/concepts/subtopic2.html
deleted file mode 100644 (file)
index 86bcbf9..0000000
+++ /dev/null
@@ -1,13 +0,0 @@
-<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN">
-
-<html>
-<head>
-       <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1">
-       <title>Sub Topic 2</title>
-</head>
-
-<body>
-<h1>Sub Topic 2</h1>
-Please enter your text here.
-</body>
-</html>
\ No newline at end of file
diff --git a/eu.etaxonomy.taxeditor.help/html/nameparser/authorship_part.html b/eu.etaxonomy.taxeditor.help/html/nameparser/authorship_part.html
new file mode 100644 (file)
index 0000000..f8a29d8
--- /dev/null
@@ -0,0 +1,26 @@
+<h3>Authorship Part</h3>
+
+<p>The authorship part is divided into the original combination authorship and the combination authorship. 
+The earlier is put in brackets.</p>
+
+<pre>
+Example (bot.): (L.) Mill. 
+Example (zoo.): (XXX, 1830) XXX, 1845
+</pre> 
+
+<p>You can use either no authorship (only if not followed by any other part), the original combination 
+authorship, the combination authorship or both.</p>
+
+<p>The parser differentiates botanical and zoological authorship. The later has a year following the 
+author, separated by a comma. Botanical names only have authors. 
+Authorship may include single persons and teams. Team members are separated by <code>&amp;</code> . A placeholder <code>al.</code> 
+may be used for further team members. Both authorships may include ex-authors separated by <code>ex</code> or <code>ex.</code> 
+Some valid author strings are:</p> 
+<pre>
+Example (bot.): (Greuther & L'Hiver & al. ex Müller & Schmidt) Clark ex Ciardelli 
+Example (zoo.):
+</pre>
+
+<p>The number of allowed special characters like <code>'</code> or <code>-</code> at the moment is beyond the scope of this 
+documentation and will change in the future.</p>
+
diff --git a/eu.etaxonomy.taxeditor.help/html/nameparser/name_part.html b/eu.etaxonomy.taxeditor.help/html/nameparser/name_part.html
new file mode 100644 (file)
index 0000000..4fc3b1d
--- /dev/null
@@ -0,0 +1,69 @@
+<h3>Name Part</h3>
+
+<p>The name part recognizes uninomials, binomials and trinomials. The first epithet must start 
+with a capital letter; all other words (except for infrageneric epitheta) can only contain 
+lower-case letters. Only latin letters are allowed in names (except for <strong>ï</strong>).
+The name part parser differentiates 6 different syntaxes.</p>
+
+<h4>Uninomials</h4>
+<p>One word starting with a capital letter. As the rank is usually ambiguous for uninomials, 
+the rank represents the parser's best guess and a warning is returned to check the rank.</p>
+<pre>Example: Cichorieae</pre>
+
+
+<h4>Infrageneric Names</h4>
+<p>Capital word followed by the infrageneric marker followed by the infrageneric epitheton. 
+Valid markers are: 
+       <ul>
+               <li><code>subgen.</code></li>
+               <li><code>subg.</code></li>
+               <li><code>sect.</code></li>
+               <li><code>subsect.</code></li>
+               <li><code>ser.</code></li>
+               <li><code>subser.</code></li>
+               <li><code>t.infgen.</code></li>
+       </ul>
+</p>
+<pre>Example: Desmometopa subg. LitoXXX</pre>
+
+
+<h4>Species Aggregates</h4>
+<p>Species aggregates are recognized similarly to species except they are followed by a group 
+marker. Valid markers are: 
+       <ul>
+               <li><code>aggr.</code></li>
+               <li><code>agg.</code></li>
+               <li><code>group</code></li>
+       </ul>
+</p>
+<pre>Example: XXX</pre>
+
+
+<h4>Species</h4>
+<p>Species names have a genus part (capital letter) and a species part (lower case letter).</p>
+<pre>Examples are: Abies alba</pre>
+
+<h4>Infraspecific names</h4>
+<p>Infraspecific names have four parts: the genus part, the species part, the infraspecific 
+marker and the infraspecific part. All but the first may not start with a capital letter. 
+Recognized markers are: 
+       <ul>
+               <li><code>subsp.</code></li> 
+               <li><code>convar.</code></li>
+               <li><code>var.</code></li>
+               <li><code>subvar.</code></li>
+               <li><code>f.</code></li>
+               <li><code>subf.</code></li>
+               <li><code>f.spec.</code></li>
+               <li><code>tax.infrasp.</code></li> 
+               <li><code>tax. infrasp.</code></li>
+       </ul>
+
+</p>
+<pre>Example:</pre>
+
+<h4>Infraspecific names (old markers)</h4>
+<p>Some older names (not valid according to the nomenclatural code) use other infraspecific 
+markers. The recognition of these older names is not yet implemented.</p>
+
+
diff --git a/eu.etaxonomy.taxeditor.help/html/nameparser/nomenclatural_status_part.html b/eu.etaxonomy.taxeditor.help/html/nameparser/nomenclatural_status_part.html
new file mode 100644 (file)
index 0000000..e3c5fb1
--- /dev/null
@@ -0,0 +1,20 @@
+<h3>Nomenclatural Status</h3>
+
+<p>The nomeclatural status is separated from the preceding text by a comma. Current valid values for a status:</p> 
+
+<ul>
+       <li><code>nom. superfl.</code></li>
+       <li><code>nom. nud.</code></li> 
+       <li><code>nom. illeg.</code></li> 
+       <li><code>nom. inval.</code></li> 
+       <li><code>nom. cons.</code></li> 
+       <li><code>nom. alternativ.</code></li> 
+       <li><code>nom. subnud.</code></li> 
+       <li><code>nom. rej.</code></li>
+       <li><code>nom. rej.</code></li> 
+       <li><code>nom. prop.</code></li> 
+       <li><code>nom. provis.</code></li> 
+       <li><code>orth. var.</code></li>
+</ul>  
+
+<p>Multiple values separated by comma are possible.</p>
\ No newline at end of file
diff --git a/eu.etaxonomy.taxeditor.help/html/nameparser/overview.html b/eu.etaxonomy.taxeditor.help/html/nameparser/overview.html
new file mode 100644 (file)
index 0000000..ba52dd4
--- /dev/null
@@ -0,0 +1,51 @@
+<h2>Name Parser Documentation</h2>
+
+
+<p>The taxonomic name parser analyzes a free text taxonomic reference for the following four components:</p>
+
+<ul>
+       <li><a href="name_part.html">Name Part</a></li>
+       <li><a href="authorship_part.html">Authorship Part</a></li>
+       <li><a href="reference_part.html">Reference Part</a></li>
+       <li><a href="nomenclatural_status_part.html">Nomenclatural Status</a></li>
+</ul>
+
+<p>Not all of them are required.</p>
+
+<p>The four parts are separated by the following separators:</p>
+
+<table border="1">
+       <thead>
+               <tr>
+                       <td>part</td>
+                       <td>separator</td>
+                       <td>example</td>
+               </tr>
+       </thead>
+       <tbody>
+               <tr>
+                       <td>authorship</td>
+                       <td>any whitespace</td>
+                       <td><code>Abies alba_L.</code></td>
+               </tr>
+               <tr>
+                       <td>reference</td>
+                       <td>commata with following whitespace OR whitespace+'in'+whitespace</td>
+                       <td><code>Abies alba L.,_Sp. Pl... or Pinus alba_in_Bull. Soc....</code></td>
+               </tr>
+               <tr>
+                       <td>nom. status</td>
+                       <td>commata with following whitespace</td>
+                       <td><code>in Bull. Bot. 3: 99. 1987., nom illeg.</code></td>
+               </tr>
+       </tbody>
+</table>
+
+<p>Some valid name texts fully recognized by the parser are:</p>
+
+<pre>
+Abies alba (L.) Mill., Sp. Pl.: 105. 1846., nom illeg. 
+Abies alba (L.) Mill. in Bull. Bot. 3: 99. 1987., nom illeg.
+</pre> 
+
+<p>The name part is required. The authorship part is required only if followed by the reference part. The reference part as well as the status part are not required. In the following sections, the four parts are described in detail:</p>
\ No newline at end of file
diff --git a/eu.etaxonomy.taxeditor.help/html/nameparser/reference_part.html b/eu.etaxonomy.taxeditor.help/html/nameparser/reference_part.html
new file mode 100644 (file)
index 0000000..bc9ac8c
--- /dev/null
@@ -0,0 +1,50 @@
+<h3>Reference Part</h3>
+
+<p>The reference part follows the syntax: <code>{separator}{authorship{,}}{titleEditionVolume}{:}{detail}{.}{year}</code></p>
+
+<p>Zoological new combinations should not have a reference part, since in zoology, it is not common 
+to mention the new combination reference.</p>
+
+<h4>Separator</h4>
+
+<p>The separator between the reference part and the preceding authorship may be a comma , or 
+an <pre> in </pre> (surrounded by whitespaces). The comma indicates a book whereas the <code>in</code> stands either 
+for a journal article or a book section. If the <code>in</code> is not followed by a comma, the parser 
+interprets the reference as an article; otherwise, as a book section. Reference type parsing 
+should be improved in future.</p>
+
+<h4>Reference Authorship</h4>
+
+<p>An author is only available for book sections. Articles and book sections are differentiated 
+from each other by comparing the first four words that follow the separator. If these words 
+include a comma and the words before the comma are likely to represent an author, the reference 
+is recognized as a book section. Otherwise, it will be treated as an article. In both cases, 
+a warning is thrown that differentiation is not possible.</p>
+
+<h4>TitleEditionVolume</h4>
+
+<p>The TitleEditionVolume part includes the title itself as well as optional edition part 
+and volume parts. The title itself allows most character combinations but care must be taken 
+if a <code>:</code> is included as this is the separator for the subsequent detail part. Special characters 
+like <code>&amp;</code> and <code>-</code> are only allowed if preceded and followed immediately by ordinary characters. 
+Ordinary brackets are allowed. Edition and volume are separated by whitespace if only one 
+of them exists. If both exist the later is separated by a comma. Both are optional, so all 
+four of the following formats are valid:</p>
+
+<pre>
+Sp. Pl.
+Sp. Pl. ed. 3
+Sp. Pl. ed. 3, 4
+Sp. Pl. 4
+</pre>
+
+<p>As can be seen, the edition is recognized by a preceding <code>ed.</code>, whereas the volume is just 
+a number (or a number followed by another number in brackets - e.g. <code>4(5)</code> ).</p>
+
+<p>The detail part is separated by a column <code>:</code> from the preceding titleEditonVolume part and 
+is separated from the year by <code>.</code> (botanical names only). A number of typical detail information 
+is recognized as either pure page numbers (<code>345</code>) or ranges (<code>345-348</code>). Page numbers may be 
+preceded by <code>p.</code>(e.g. <code>p. 345</code>) or <code>pp.</code>(e.g. <code>pp. 345-348</code>). Abbreviations indicating special parts of a 
+reference such as <code>fig.</code> or <code>tab.</code> are recognized as well. Roman numbers are not detected 
+at the moment.</p>
+
diff --git a/eu.etaxonomy.taxeditor.help/html/reference/maintopic.html b/eu.etaxonomy.taxeditor.help/html/reference/maintopic.html
deleted file mode 100644 (file)
index a476078..0000000
+++ /dev/null
@@ -1,13 +0,0 @@
-<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN">
-
-<html>
-<head>
-       <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1">
-       <title>Main Topic</title>
-</head>
-
-<body>
-<h1>Main Topic</h1>
-Please enter your text here.
-</body>
-</html>
\ No newline at end of file
diff --git a/eu.etaxonomy.taxeditor.help/html/reference/subtopic.html b/eu.etaxonomy.taxeditor.help/html/reference/subtopic.html
deleted file mode 100644 (file)
index 8a61c50..0000000
+++ /dev/null
@@ -1,13 +0,0 @@
-<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN">
-
-<html>
-<head>
-       <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1">
-       <title>Sub Topic</title>
-</head>
-
-<body>
-<h1>Sub Topic</h1>
-Please enter your text here.
-</body>
-</html>
\ No newline at end of file
diff --git a/eu.etaxonomy.taxeditor.help/html/reference/subtopic2.html b/eu.etaxonomy.taxeditor.help/html/reference/subtopic2.html
deleted file mode 100644 (file)
index 86bcbf9..0000000
+++ /dev/null
@@ -1,13 +0,0 @@
-<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN">
-
-<html>
-<head>
-       <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1">
-       <title>Sub Topic 2</title>
-</head>
-
-<body>
-<h1>Sub Topic 2</h1>
-Please enter your text here.
-</body>
-</html>
\ No newline at end of file
diff --git a/eu.etaxonomy.taxeditor.help/html/samples/maintopic.html b/eu.etaxonomy.taxeditor.help/html/samples/maintopic.html
deleted file mode 100644 (file)
index a476078..0000000
+++ /dev/null
@@ -1,13 +0,0 @@
-<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN">
-
-<html>
-<head>
-       <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1">
-       <title>Main Topic</title>
-</head>
-
-<body>
-<h1>Main Topic</h1>
-Please enter your text here.
-</body>
-</html>
\ No newline at end of file
diff --git a/eu.etaxonomy.taxeditor.help/html/samples/subtopic.html b/eu.etaxonomy.taxeditor.help/html/samples/subtopic.html
deleted file mode 100644 (file)
index 8a61c50..0000000
+++ /dev/null
@@ -1,13 +0,0 @@
-<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN">
-
-<html>
-<head>
-       <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1">
-       <title>Sub Topic</title>
-</head>
-
-<body>
-<h1>Sub Topic</h1>
-Please enter your text here.
-</body>
-</html>
\ No newline at end of file
diff --git a/eu.etaxonomy.taxeditor.help/html/samples/subtopic2.html b/eu.etaxonomy.taxeditor.help/html/samples/subtopic2.html
deleted file mode 100644 (file)
index 86bcbf9..0000000
+++ /dev/null
@@ -1,13 +0,0 @@
-<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN">
-
-<html>
-<head>
-       <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1">
-       <title>Sub Topic 2</title>
-</head>
-
-<body>
-<h1>Sub Topic 2</h1>
-Please enter your text here.
-</body>
-</html>
\ No newline at end of file
diff --git a/eu.etaxonomy.taxeditor.help/html/tasks/maintopic.html b/eu.etaxonomy.taxeditor.help/html/tasks/maintopic.html
deleted file mode 100644 (file)
index a476078..0000000
+++ /dev/null
@@ -1,13 +0,0 @@
-<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN">
-
-<html>
-<head>
-       <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1">
-       <title>Main Topic</title>
-</head>
-
-<body>
-<h1>Main Topic</h1>
-Please enter your text here.
-</body>
-</html>
\ No newline at end of file
diff --git a/eu.etaxonomy.taxeditor.help/html/tasks/subtopic.html b/eu.etaxonomy.taxeditor.help/html/tasks/subtopic.html
deleted file mode 100644 (file)
index 8a61c50..0000000
+++ /dev/null
@@ -1,13 +0,0 @@
-<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN">
-
-<html>
-<head>
-       <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1">
-       <title>Sub Topic</title>
-</head>
-
-<body>
-<h1>Sub Topic</h1>
-Please enter your text here.
-</body>
-</html>
\ No newline at end of file
diff --git a/eu.etaxonomy.taxeditor.help/html/tasks/subtopic2.html b/eu.etaxonomy.taxeditor.help/html/tasks/subtopic2.html
deleted file mode 100644 (file)
index 86bcbf9..0000000
+++ /dev/null
@@ -1,13 +0,0 @@
-<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN">
-
-<html>
-<head>
-       <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1">
-       <title>Sub Topic 2</title>
-</head>
-
-<body>
-<h1>Sub Topic 2</h1>
-Please enter your text here.
-</body>
-</html>
\ No newline at end of file
diff --git a/eu.etaxonomy.taxeditor.help/html/toc.html b/eu.etaxonomy.taxeditor.help/html/toc.html
deleted file mode 100644 (file)
index 326f0a9..0000000
+++ /dev/null
@@ -1,13 +0,0 @@
-<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN">
-
-<html>
-<head>
-       <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1">
-       <title>Table of Contents</title>
-</head>
-
-<body>
-<h1>Table of Contents</h1>
-Please enter your text here.
-</body>
-</html>
\ No newline at end of file
index 027ed0feeea328256ca7f9b66a7eac31e85d73e6..db9b794efc51bb1c780051963702c4640dc6474d 100644 (file)
@@ -9,7 +9,12 @@
             primary="true">
       </toc>
       <toc
-            file="tocgettingstarted.xml">
+            file="tocgettingstarted.xml"
+            primary="false">
+      </toc>
+      <toc
+            file="tocnameparser.xml"
+            primary="false">
       </toc>
    </extension>
 
index 011941785d1e2936964456bda71f0a954c0ba5c6..92e4369ca1d4875bfe60f550bc7c568a623093bc 100644 (file)
@@ -1,8 +1,11 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <?NLS TYPE="org.eclipse.help.toc"?>
 
-<toc label="EDIT Taxonomic Editor" topic="html/toc.html">
+<toc label="EDIT Taxonomic Editor">
    <topic label="Getting Started">
       <anchor id="gettingstarted"/>
    </topic>
+   <topic label="Name Parser">
+      <anchor id="nameparser"/>
+   </topic>
 </toc>
diff --git a/eu.etaxonomy.taxeditor.help/tocnameparser.xml b/eu.etaxonomy.taxeditor.help/tocnameparser.xml
new file mode 100644 (file)
index 0000000..b249a5a
--- /dev/null
@@ -0,0 +1,12 @@
+<toc label="Name Parser" link_to="toc.xml#nameparser">
+   <topic href="html/nameparser/overview.html" label="Overview">
+   </topic>
+   <topic href="html/nameparser/name_part.html" label="Name Part">
+   </topic>
+   <topic href="html/nameparser/authorship_part.html" label="Authorship Part">
+   </topic>
+   <topic href="html/nameparser/reference_part.html" label="Reference Part">
+   </topic>
+   <topic href="html/nameparser/nomenclatural_status_part.html" label="Nomenclatural Status Part">
+   </topic> 
+</toc>
index af4e756df1aa7373797850c54dd068025409028b..c5859503cbc8ff2c6c7f737a8fe3fedda71e5d23 100644 (file)
       <definition
             id="isTaxonNode">
          <with
-               variable="activeMenuSelection">
+               variable="selection">
             <iterate>
                <instanceof
                      value="eu.etaxonomy.cdm.model.taxon.TaxonNode">
       <definition
             id="isTaxonomicTree">
          <with
-               variable="activeMenuSelection">
+               variable="selection">
             <iterate>
                <instanceof
                      value="eu.etaxonomy.cdm.model.taxon.TaxonomicTree">
       <definition
             id="isSynonymNode">
          <with
-               variable="activeMenuSelection">
+               variable="selection">
             <iterate>
                <instanceof
                      value="eu.etaxonomy.cdm.model.taxon.Synonym">
index 8376ad3e252597efd7360bf2b4213be85e2c403d..0092091d60316b4464bcab390bb6fb468d601300 100644 (file)
    <definition
          id="isCompatible">
       <with
-            variable="activeMenuSelection">
+            variable="selection">
          <test
                property="eu.etaxonomy.taxeditor.datasource.propertyTester.isCompatible">
          </test>
    <definition
          id="isShowExperimentalFeatures">
       <with
-            variable="activeMenuSelection">
+            variable="selection">
          <test
                property="eu.etaxonomy.taxeditor.preferences.propertyTester.isShowExperimentalFeatures">
          </test>
    <definition
          id="isModifiable">
       <with
-            variable="activeMenuSelection">
+            variable="selection">
          <test
                property="eu.etaxonomy.taxeditor.store.termEditor.propertyTester.isModifiable">
          </test>
index 51681507807b4d4fe95159b3dd2a678b6ac92f7e..5c2d7a379c93c9bead6f68b2ffeb944c63db3e3f 100644 (file)
@@ -62,4 +62,9 @@ public class TextHelper {
                return textValue;
                
        }
+       
+       public static String deproxyClassName(Class clazz){
+               String name = clazz.getSimpleName();
+               return name.substring(0, name.indexOf("_$$"));
+       }
 }
index fee26b5c69658e984556ce720920011128d52691..f2657aae1f13b8d4400d0e925b477cc3d0f1a9f9 100644 (file)
@@ -50,9 +50,16 @@ public abstract class AbstractNewEntityWizard<T> extends Wizard implements
         * @param <T> a T object.
         */
        public AbstractNewEntityWizard(){
-               setWindowTitle("New Entity");
+               setWindowTitle(String.format("New %s", getEntityName()));
        }
        
+       /**
+        * FIXME there might be a smarter way to do this,
+        * 
+        * @return
+        */
+       protected abstract String getEntityName();
+
        /* (non-Javadoc)
         * @see org.eclipse.jface.wizard.Wizard#performFinish()
         */
index b105ac6a6ce4d00920184b9c0d2702bd9528495c..6b23b4bc04b8974d7f04b79dae779a71fa605be5 100644 (file)
@@ -32,7 +32,7 @@ public class NewClassificationWizard extends AbstractNewEntityWizard<Classificat
         */
        @Override
        public void setEntity(Classification entity) {
-               setWindowTitle("Edit Classification");
+               setWindowTitle(String.format("Edit %s", getEntityName()));
                entity = CdmStore.getService(IClassificationService.class).load(entity.getUuid());
                super.setEntity(entity);
        }
@@ -52,4 +52,9 @@ public class NewClassificationWizard extends AbstractNewEntityWizard<Classificat
        protected Classification createNewEntity() {
                return Classification.NewInstance(null);
        }
+
+       @Override
+       protected String getEntityName() {
+               return "Classification";
+       }
 }
index 7ec742e5c444f73e1a0258578419b4577ecf27b2..d28f0ec5d6ddf22aebde5d18e77193ed517b6ba5 100644 (file)
@@ -47,5 +47,10 @@ public class NewCollectionWizard extends AbstractNewEntityWizard<Collection> {
        protected Collection createNewEntity() {
                return Collection.NewInstance();
        }
+
+       @Override
+       protected String getEntityName() {
+               return "Collection";
+       }
        
 }
index d64adb137642bac0e8c8e4c062179a0e3fc2f660..d132f0544eb0b3beb48ff8a99753768ec1dd666d 100644 (file)
@@ -72,4 +72,11 @@ public class NewDerivedUnitBaseWizard extends AbstractNewEntityWizard<DerivedUni
        protected void saveEntity() {
                CdmStore.getService(IOccurrenceService.class).saveOrUpdate(getEntity());
        }
+
+       @Override
+       protected String getEntityName() {
+               return "Specimen";
+       }
+       
+       
 }
index d25a83869fbeee4670b394b73dff0186e6915025..925aead2a171bf33a16efd6bd1a18ad22050cf27 100644 (file)
@@ -40,4 +40,9 @@ public class NewFieldObservationWizard extends AbstractNewEntityWizard<FieldObse
        protected void saveEntity() {
                CdmStore.getService(IOccurrenceService.class).saveOrUpdate(getEntity());
        }
+
+       @Override
+       protected String getEntityName() {
+               return "Field Observation";
+       }
 }
index 5cf320748e9ba554c05670a177cedd683dfd6690..ad6c3ac255de9a5d835726ce5b3b8ef04734a295 100644 (file)
@@ -49,4 +49,9 @@ public class NewGroupWizard extends AbstractNewEntityWizard<Group> {
                return Group.NewInstance();
        }
 
+       @Override
+       protected String getEntityName() {
+               return "Group";
+       }
+
 }
index 50e1117d35239199953000d78c69e8799ef592df..1eba0be640dbf9de4c056c80c32d23bdedc40e47 100644 (file)
@@ -46,4 +46,9 @@ public class NewInstitutionWizard extends AbstractNewEntityWizard<Institution> {
                return Institution.NewInstance();
        }
 
+       @Override
+       protected String getEntityName() {
+               return "Institution";
+       }
+
 }
index c82a842be4398b4f31dde650e770daeb2a07e4e7..9ab033f49d32d61679c873dd9ec5d0cc357084e5 100644 (file)
@@ -51,4 +51,9 @@ public class NewNonViralNameWizard extends AbstractNewEntityWizard<NonViralName>
        protected void saveEntity() {
                CdmStore.getService(INameService.class).saveOrUpdate(getEntity());
        }
+
+       @Override
+       protected String getEntityName() {
+               return "Scientific Name";
+       }
 }
index 2268713342c95ad21c1e9d7dfa0cb52514c1ee9d..da18787665f6b06ea4ce61095da79e6055b150b8 100644 (file)
@@ -41,4 +41,9 @@ public class NewPersonWizard extends AbstractNewEntityWizard<Person> {
        protected void saveEntity() {
                CdmStore.getService(IAgentService.class).saveOrUpdate(getEntity());
        }
+
+       @Override
+       protected String getEntityName() {
+               return "Person";
+       }
 }
index ec67349a0f5c1f6b4af7b466674e6a7630908a9b..7b7624a7361c96aecc332e82442da9812f959df3 100644 (file)
@@ -35,4 +35,9 @@ public class NewPolytomousKeyWizard extends AbstractNewEntityWizard<PolytomousKe
                return PolytomousKey.NewInstance();
        }
 
+       @Override
+       protected String getEntityName() {
+               return "Polytomous Key";
+       }
+
 }
index 91131aa736c68df006757c12a102602751695de1..f1b19c94a5dac2417fac4d26252401f63d027f98 100644 (file)
@@ -54,4 +54,9 @@ public class NewReferenceWizard extends AbstractNewEntityWizard<Reference> {
                super.setEntity(entity);
                referencePage.getDetailElement().setEntity(entity);
        }
+
+       @Override
+       protected String getEntityName() {
+               return "Reference";
+       }
 }
index 983785da1fc30be6b6f58fe5a82db84dafc7a445..f0e65cbd5134ab5f0ac512e08deb4e2c2c07da35 100644 (file)
@@ -105,5 +105,10 @@ public class NewTaxonNodeWizard extends AbstractNewEntityWizard<ITreeNode>{
        public ITreeNode getParentTreeNode(){
                return taxonNodePage.getParentTreeNode();
        }
+
+       @Override
+       protected String getEntityName() {
+               return "Taxon";
+       }
        
 }
\ No newline at end of file
index 4e50f0c6b8fcc706b27bb319e13ed595dbea6866..050b5984334b77d838c98d2b54b95715fcd87b6c 100644 (file)
@@ -44,4 +44,9 @@ public class NewTeamWizard extends AbstractNewEntityWizard<Team> {
        protected void saveEntity() {
                CdmStore.getService(IAgentService.class).saveOrUpdate(getEntity());
        }
+
+       @Override
+       protected String getEntityName() {
+               return "Team";
+       }
 }
index 61243981c3c76b1fce788e3d0e03276952efb08f..aa3cd19dd733d2ae274bbc270091134c2b05eb6c 100644 (file)
@@ -32,4 +32,9 @@ public class NewUserWizard extends AbstractNewEntityWizard<User> {
                return User.NewInstance(null, null);
        }
 
+       @Override
+       protected String getEntityName() {
+               return "Institution";
+       }
+
 }
index 08f00c59fa08dfad5251dd228b9651c5fe96bae4..c43ac73e0ab1ec0b7118a81bb0bfff538c154c94 100644 (file)
@@ -191,14 +191,14 @@ public class TermComboElement<T extends DefinedTermBase>
                        if (label == null) {
                                if (term.getTitleCache() != null) {
                                        label = term.getTitleCache();
-                                       StoreUtil.error(getClass(),
+                                       StoreUtil.warn(getClass(),
                                                        "Term does not have a representation: " + term
-                                                                       + ", " + term.getUuid(), null);
+                                                                       + ", " + term.getUuid());
                                } else {
                                        label = "Unknown";
-                                       StoreUtil.error(getClass(),
+                                       StoreUtil.warn(getClass(),
                                                        "Representation Label and TitleCache empty for term: "
-                                                                       + term + ", " + term.getUuid(), null);
+                                                                       + term + ", " + term.getUuid());
                                }
 
                        }
index 64e95d95b2099262624cde63c0900c499774e9a0..2cf643d510af2f4d07e0bb3b4310d01d6a1bb954 100644 (file)
@@ -52,12 +52,13 @@ public class CommonNameDetailElement extends AbstractDetailedDescriptionDetailEl
        @Override
        protected void createControls(ICdmFormElement formElement,
                        CommonTaxonName entity, int style) {
+               commonName = formFactory.createTextWithLabelElement(this, "Common Name", entity.getName(), SWT.WRAP);
+
                combo_language = formFactory.createTermComboElement(Language.class, this, "Language", entity.getLanguage(), style);
 
                selection_namedArea = formFactory.createSelectionElement(NamedArea.class, getConversationHolder(),
                                formElement, "Area",
                                entity.getArea(), EntitySelectionElement.NOTHING, style);
-               commonName = formFactory.createTextWithLabelElement(this, "Common Name", entity.getName(), SWT.WRAP);
        }
 
        /** {@inheritDoc} */
index bc6a2240f1dc1bac1b0df7bcd85c089f0e0a423d..95221da5ed233016a069d58aac987d7b470c7c35 100644 (file)
@@ -63,7 +63,7 @@ public class TaxonInteractionDetailElement extends
                        TaxonInteraction entity, int style) {
                taxonSelection = formFactory
                                .createSelectionElement(Taxon.class,
-                                               getConversationHolder(), this, null,
+                                               getConversationHolder(), this, "Taxon",
                                                entity.getTaxon2(), EntitySelectionElement.NOTHING,
                                                SWT.WRAP);
 
index 5319bb240692070558de0648b9871b33853a2a4f..7c2da263c727d4019e6e7fb5441488db986f9ce2 100644 (file)
@@ -28,6 +28,7 @@ import eu.etaxonomy.cdm.model.name.NonViralName;
 import eu.etaxonomy.cdm.model.occurrence.Collection;
 import eu.etaxonomy.cdm.model.occurrence.DerivedUnitBase;
 import eu.etaxonomy.cdm.model.reference.Reference;
+import eu.etaxonomy.taxeditor.model.TextHelper;
 import eu.etaxonomy.taxeditor.preference.PreferencesUtil;
 import eu.etaxonomy.taxeditor.store.StoreUtil;
 import eu.etaxonomy.taxeditor.ui.element.CdmFormFactory;
@@ -69,7 +70,7 @@ public class EditFromSelectionWizard extends Wizard implements
         */
        public EditFromSelectionWizard(EntitySelectionElement selectionElement) {
                this.selectionElement = selectionElement;
-               this.setWindowTitle("Edit Entity");
+               this.setWindowTitle(String.format("Edit %s", TextHelper.deproxyClassName(selectionElement.getEntity().getClass())));
        }
 
        /** {@inheritDoc} */
index 4f10e1ee263c594c5ef7df435bb7b70090d777b4..bb240e89c9878e260d90a4ed75b747ab0f40ecae 100644 (file)
@@ -49,7 +49,7 @@ abstract class AbstractDataSourceHandler extends AbstractHandler {
         * @return a {@link eu.etaxonomy.taxeditor.view.datasource.CdmMetaDataAwareDataSourceContainer} object.
         */
        protected CdmMetaDataAwareDataSourceContainer getSelectedDataSourceContainer(ExecutionEvent event){
-               ISelection menuSelection = HandlerUtil.getActiveMenuSelection(event);
+               ISelection menuSelection = HandlerUtil.getCurrentSelection(event);
                CdmMetaDataAwareDataSourceContainer container = (CdmMetaDataAwareDataSourceContainer) ((StructuredSelection) menuSelection).getFirstElement();
                return container;
        }
index f351f7297ef4e848f69f2e770ddaa03fecffd1ce..7cb5220fe12accdb44a48105a0db991e84f2bffd 100644 (file)
                                        </products>
                                </configuration>
                        </plugin>
+                       <plugin>
+                       <artifactId>maven-antrun-plugin</artifactId>
+                       <executions>
+                         <execution>
+                           <phase>package</phase>
+                           <configuration>
+                             <target>
+
+                               <!--
+                                 Place any Ant task here. You can add anything
+                                 you can add between <target> and </target> in a
+                                 build.xml.
+                               -->
+
+                             </target>
+                           </configuration>
+                           <goals>
+                             <goal>package</goal>
+                           </goals>
+                         </execution>
+                       </executions>
+                     </plugin>
                </plugins>
        </build>
 
diff --git a/pom.xml b/pom.xml
index 672005895a5d212e036bd8140892e0abe6cc54d5..9faaaaf30cc0ec4708b6d66ad9557a500374c82a 100644 (file)
--- a/pom.xml
+++ b/pom.xml
@@ -14,8 +14,8 @@
   <packaging>pom</packaging>
   <properties>
     <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
-    <cdmlib.version>3.0.10-SNAPSHOT</cdmlib.version>
-    <tycho.version>0.13.0</tycho.version>
+    <cdmlib.version>3.0.10-SNAPSHOT</cdmlib.version><!-- TODO can we use project.version ????? -->
+    <tycho.version>0.14.0</tycho.version>
     <taxeditor.version>3.0.10-SNAPSHOT</taxeditor.version>
   </properties>
   <modules>
         <version>1.0-beta-2</version>
       </extension>
     </extensions>
+    <pluginManagement>
+      <plugins>
+       <plugin>
+         <groupId>org.apache.maven.plugins</groupId>
+         <artifactId>maven-antrun-plugin</artifactId>
+         <version>1.7</version>
+       </plugin>
+      </plugins>
+    </pluginManagement>
   </build>
   <reporting>
     <plugins>
index 6bd8b2fab95825c4d218810fc4d49b893283ae8c..fc8df516b7b436e73e2284f1f0c9e2eb820bd9f6 100644 (file)
@@ -49,14 +49,14 @@ $ svn co http://dev.e-taxonomy.eu/svn/trunk/taxeditor
        The Taxonomic Editor uses <maven 3> for convenient configuration and automation of common tasks, 
        such as resolving dependencies and automating builds.
        
-       The <<<trunk>>> branch of the Taxonomic Editor is programmed against the latest
+       The <<<latest snapshot branch>>> of the Taxonomic Editor is programmed against the latest
        SNAPSHOT version of the cdmlibrary. Because that dependency will change quickly, we
        do not imclude it with the other dependencies but rather install it with maven.
 
-       In order to do that you have to run <<<mvn validate>>> in your <<<taxeditor/>>> directory.
+       In order to do that you have to run <<<mvn validate>>> in your <<<taxeditor/eu.etaxonomy.taxeditor.cdmlib>>> directory.
 
 ---
-$ cd taxeditor/
+$ cd taxeditor/eu.etaxonomy.taxeditor.cdmlib/
 $ mvn validate
 ---